Citrus Sinensis ID: 045799
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 231 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BVH9 | 282 | Methyltransferase-like pr | yes | no | 0.874 | 0.716 | 0.359 | 4e-36 | |
| Q6AXU8 | 287 | Methyltransferase-like pr | yes | no | 0.874 | 0.703 | 0.354 | 7e-36 | |
| Q8TCB7 | 284 | Methyltransferase-like pr | yes | no | 0.878 | 0.714 | 0.365 | 2e-35 | |
| Q5RDV8 | 282 | Methyltransferase-like pr | yes | no | 0.878 | 0.719 | 0.356 | 2e-33 | |
| Q5M8E6 | 337 | Methyltransferase-like pr | no | no | 0.961 | 0.658 | 0.314 | 8e-33 | |
| Q86BS6 | 325 | Methyltransferase-like pr | yes | no | 0.891 | 0.633 | 0.324 | 5e-32 | |
| O74386 | 248 | Uncharacterized methyltra | yes | no | 0.831 | 0.774 | 0.340 | 5e-32 | |
| Q08641 | 628 | Uncharacterized methyltra | yes | no | 0.870 | 0.320 | 0.321 | 4e-29 | |
| A8KBL7 | 353 | Methyltransferase-like pr | no | no | 0.922 | 0.603 | 0.308 | 5e-28 | |
| Q9P7L6 | 307 | Uncharacterized methyltra | no | no | 0.891 | 0.671 | 0.296 | 1e-27 |
| >sp|Q8BVH9|METL6_MOUSE Methyltransferase-like protein 6 OS=Mus musculus GN=Mettl6 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 29/231 (12%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPN--GNPKVVLEVGCG 82
++ + +A+K WD FYKR+ FFKDRH+ ++ F + C G +LE GCG
Sbjct: 34 QQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTRE----FEELRSCREYEGQKLTLLEAGCG 89
Query: 83 AGNTIFPLVS----------------------HSEFREERVNAFVCNVVNDDLSRNVNPS 120
GN +FPL+ H + ER F C++ DDL +V P
Sbjct: 90 VGNCLFPLLEEDLNLFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHVPPE 149
Query: 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGD 180
SVD VTLIF+LSAV P+KM L+L N+ VLKP +L DY + D A ++ +G+
Sbjct: 150 SVDAVTLIFVLSAVHPEKMRLVLLNVYKVLKPGRSVLFRDYGLNDHAMLR-FKAGSKLGE 208
Query: 181 SFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
+FYVR DGT S++F+++FL+ LF++AG+ V ++ N+ + + + R
Sbjct: 209 NFYVRQDGTRSYFFTDEFLAQLFVDAGYEEVVNEYVFRETVNKKEGLCVPR 259
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q6AXU8|METL6_RAT Methyltransferase-like protein 6 OS=Rattus norvegicus GN=Mettl6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 29/231 (12%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPN--GNPKVVLEVGCG 82
++ + +A+K WD FYKR+ FFKDRH+ ++ F + C G +LE GCG
Sbjct: 34 QQKLEKEAQKNWDLFYKRNSTNFFKDRHWTTRE----FEELRSCREYEGQKLTLLEAGCG 89
Query: 83 AGNTIFPLVS----------------------HSEFREERVNAFVCNVVNDDLSRNVNPS 120
GN +FPL+ H + ER F C++ DDL ++ P
Sbjct: 90 VGNCLFPLLEEDSNIFAYACDFSPRAVDYVKQHPLYNAERCKVFQCDLTRDDLLDHIPPE 149
Query: 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGD 180
SVD VTLIF+LSAV P+KM L+L N+ VLKP +L DY + D A ++ +G+
Sbjct: 150 SVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKPGRSVLFRDYGLNDHAMLR-FKAGSKLGE 208
Query: 181 SFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
+FYVR DGT S++F+++FL+ LF++AG+ V ++ N+ + + + R
Sbjct: 209 NFYVRQDGTRSYFFTDEFLAKLFVDAGYEEVVNEYVFRETVNKKEGLCVPR 259
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Probable methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8TCB7|METL6_HUMAN Methyltransferase-like protein 6 OS=Homo sapiens GN=METTL6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 27/230 (11%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKV-VLEVGCGA 83
++ + +A+K WD FYKR+ FFKDRH+ +++ SC + K+ +LE GCG
Sbjct: 34 QQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEEL---RSCREFEDQKLTMLEAGCGV 90
Query: 84 GNTIFPLVSHSE----------------------FREERVNAFVCNVVNDDLSRNVNPSS 121
GN +FPL+ + ER F C++ DDL +V P S
Sbjct: 91 GNCLFPLLEEDPNIFAYACDFSPRAIEYVKQNPLYDTERCKVFQCDLTKDDLLDHVPPES 150
Query: 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDS 181
VDVV LIF+LSAV P KM L+LQNI VLKP +L DY + D A ++ + +G++
Sbjct: 151 VDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRDYGLYDHAMLR-FKASSKLGEN 209
Query: 182 FYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
FYVR DGT S++F++DFL+ LF++ G+ V ++ N+ + + + R
Sbjct: 210 FYVRQDGTRSYFFTDDFLAQLFMDTGYEEVVNEYVFRETVNKKEGLCVPR 259
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RDV8|METL6_PONAB Methyltransferase-like protein 6 OS=Pongo abelii GN=METTL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 27/230 (11%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKV-VLEVGCGA 83
++ + +A+K WD FYKR+ FFKDRH+ +++ SC + K+ +LE G G
Sbjct: 34 QQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEEL---RSCREFEDQKLTMLEAGRGV 90
Query: 84 GNTIFPLVSHSE----------------------FREERVNAFVCNVVNDDLSRNVNPSS 121
GN +FPL+ + ER F C++ DDL +V P S
Sbjct: 91 GNCLFPLLEEDPNIFAYACDFSPRAVEYVKQNPLYDTERCKVFQCDLTKDDLLDHVPPES 150
Query: 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDS 181
VDVV LIF+LSAV P KM L+LQNI VLKP +L DY + D A ++ +G++
Sbjct: 151 VDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRDYGLYDHAMLR-FKAGSKLGEN 209
Query: 182 FYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
FYVR DGT S++F+++FL+ LF++ G+ V ++ N+ + + + R
Sbjct: 210 FYVRQDGTRSYFFTDEFLAQLFMDTGYEEVVNEYVFRETVNKKEGLCVPR 259
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Probable methyltransferase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5M8E6|METL2_XENTR Methyltransferase-like protein 2 OS=Xenopus tropicalis GN=mettl2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 136/277 (49%), Gaps = 55/277 (19%)
Query: 9 HRHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYL-------------- 54
H+ ++QP +E Y++KA +WD FY H+N+FFKDRH+L
Sbjct: 39 HKKVQENSVQPLPLEKQEEYENKASNFWDDFYTIHENRFFKDRHWLFTEFPELSSRSSTQ 98
Query: 55 ---EKDWGNYFSDDSC--------CPNGNPKV-----VLEVGCGAGNTIFPLV------- 91
E G + C N P ++EVGCG GNT+FP++
Sbjct: 99 TGTESQEGQVMQLNGCQEETERADVENPFPGASATYRIMEVGCGVGNTVFPILQNNTDPG 158
Query: 92 -----------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134
S+ + R AFV +V ++ S + S+DV+ LIF+LSA+
Sbjct: 159 LFVYCCDFSSTAVELVKSNELYSPSRCFAFVHDVSDEQSSFPMPEHSLDVIVLIFVLSAI 218
Query: 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYF 194
+P KM ++ + ++LKP G IL+ DY D AQ++ + + + ++FYVRGDGT ++F
Sbjct: 219 NPAKMQNVISRLSSLLKPGGCILLRDYGRYDMAQLR-FKKGRCLAENFYVRGDGTRVYFF 277
Query: 195 SEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
++D L TLF+ AG V + + NR + +TM R
Sbjct: 278 TQDDLDTLFISAGLQKVQNTVDRRLQVNRGKQLTMYR 314
|
Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q86BS6|METL_DROME Methyltransferase-like protein OS=Drosophila melanogaster GN=metl PE=1 SV=2 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 25/231 (10%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG 84
+E +Q+ A K+WD FY H N+FFKDRH+L ++ + P+ + E+GCG G
Sbjct: 85 KERFQTDAPKFWDSFYGIHDNRFFKDRHWLFTEFPELAPLAADSAVLQPRSIFELGCGVG 144
Query: 85 NTIFPLVSHS------------------------EFREERVNAFVCNVVNDDLSRNVNPS 120
NTI PL+ +S +F E+R FV + D +
Sbjct: 145 NTILPLLQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVPFEEN 204
Query: 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGD 180
S D++ +IF+LSA+ PKKM +L N L+P G +L DY D AQ++ + + D
Sbjct: 205 SQDIIVMIFVLSAIEPKKMQRVLDNCYRYLRPGGLLLFRDYGRYDLAQLR-FKSGKCMED 263
Query: 181 SFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
+FYVRGDGT ++F+E+ L + +AG + + + NR + + M R
Sbjct: 264 NFYVRGDGTMVYFFTEEELRGMMTQAGLQEEQLIVDRRLQVNRCRGLKMYR 314
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Probable methyltransferase. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O74386|YNVB_SCHPO Uncharacterized methyltransferase C3H7.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3H7.11 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 28/220 (12%)
Query: 36 WDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVS--- 92
WD FYKR++ +FFKDRH+L++++ YF P+ P +LEVGCG GN ++PL+
Sbjct: 23 WDKFYKRNETRFFKDRHWLDREFDCYFG----LPDKLPLTILEVGCGVGNLVYPLLEVQP 78
Query: 93 -------------------HSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSA 133
HS + E RV FV ++ D L + + +D +T IF+LSA
Sbjct: 79 NLKIYCCDFSPRAIDFVKKHSCYNENRVFPFVNDITEDSLLEVLGSACIDTLTAIFVLSA 138
Query: 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN--QMIGDSFYVRGDGTCS 191
+ +K ++N+ +V+KP G+++ DY GDFAQ K + MI + +VR DGT S
Sbjct: 139 IPREKQLRSIKNLASVIKPGGHLVFRDYCDGDFAQEKFMTSGDPSMIDEQTFVRQDGTLS 198
Query: 192 FYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
+F E+ ++ AGF V ++ + + NR +++ M R
Sbjct: 199 LFFREEDIAEWMKSAGFGLVTLDRVNRTVDNRKRNLNMKR 238
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Probable methyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q08641|AB140_YEAST Uncharacterized methyltransferase ABP140 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABP140 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 29/230 (12%)
Query: 28 YQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTI 87
Y +YWD FYK +K FFKDR +L+ ++ ++ S + P + E+GCGAGNT
Sbjct: 391 YNENPARYWDIFYKNNKENFFKDRKWLQIEFPILYA--STRKDAEPVTIFEIGCGAGNTF 448
Query: 88 FPLVSHSEFREERV------------------------NAFVCNVVNDD--LSRNVNPSS 121
FP++ +E R+ +A V ++ N D L V P S
Sbjct: 449 FPILKDNENENLRIIAADFAPRAVELVKNSEQFNPKYGHATVWDLANPDGNLPDGVEPHS 508
Query: 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDS 181
VD+ +IF+ SA++P + + N+ +LKP G I+ DY D QV+ +N+++ ++
Sbjct: 509 VDIAVMIFVFSALAPNQWDQAMDNLHKILKPGGKIIFRDYGAYDLTQVRFK-KNRILEEN 567
Query: 182 FYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
FYVRGDGT ++FSE+ L +F + F I + + NR + + M R
Sbjct: 568 FYVRGDGTRVYFFSEEKLREIFTKKYFLENKIGTDRRLLVNRKRQLKMYR 617
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Potential methyltransferase (By similarity). Binds F-actin and shows weak F-actin cross-linking activity. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A8KBL7|MEL2A_DANRE Methyltransferase-like protein 2-A OS=Danio rerio GN=mettl2a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 53/266 (19%)
Query: 18 QPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYL------------------EKDWG 59
QP +E + ++A +YW+ FY H+N+FFKDRH+L EK+
Sbjct: 75 QPLPAEKQEEFDNRANEYWNDFYTIHENRFFKDRHWLFTEFPELAPQQKHLRGAEEKESL 134
Query: 60 NYF---SDDSCCPNGN--PKV-----VLEVGCGAGNTIFPLV------------------ 91
+ D S P + P +LEVGCG GNT+FP++
Sbjct: 135 EHMLNGEDISLNPTHDEFPGASASYRILEVGCGVGNTVFPILKTNNDPGLFVYCCDFSST 194
Query: 92 ------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQN 145
S+ E+ R +AFV ++ ++ + S+DV+ LIF+LSA+ P+KM +
Sbjct: 195 AVDLVKSNPEYDPSRCHAFVHDMSDESGEYPMPDHSLDVIVLIFVLSALHPEKMQKSINR 254
Query: 146 IKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205
+ +LKP G +L+ DY D AQ++ + + + ++FYVRGDGT ++F++D L LF
Sbjct: 255 LGRLLKPGGVLLLRDYGRYDMAQLR-FKKGRCLSENFYVRGDGTRVYFFTQDELHDLFSS 313
Query: 206 AGFSTVDINIHLKQIKNRSQDITMNR 231
AG + + + NR + +TM R
Sbjct: 314 AGLEKLQNLVDRRLQVNRGKQLTMYR 339
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Probable methyltransferase. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9P7L6|METL_SCHPO Uncharacterized methyltransferase-like protein SPBC21C3.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21C3.07c PE=3 SV=2 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 126/236 (53%), Gaps = 30/236 (12%)
Query: 22 YPLEEH--YQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEV 79
YP+ E Y + ++YWD FY +++ KFF +R ++ +++ D + K +LE+
Sbjct: 67 YPVTEKDAYMTHPERYWDQFYGKNEGKFFMNRRWIAQEFPELL--DLLKEDAGEKSILEI 124
Query: 80 GCGAGNTIFPLVSHS----------EFREERVN--------------AFVCNVVNDDLSR 115
GCGAGNTI+P++ + ++ E+ ++ A V ++ DL R
Sbjct: 125 GCGAGNTIWPILKENKNSNLKIFAVDYSEKAIDVVKQNPLYDAKFCSASVWDLAGSDLLR 184
Query: 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN 175
++ +S+D +TLIF SA+SP + ++N+ +LKP G IL DY D Q++ +N
Sbjct: 185 SIEEASIDAITLIFCFSALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLR-AKKN 243
Query: 176 QMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
+++ ++FY+RGDGT +Y + + L +F F + + + I NR + + M R
Sbjct: 244 RILSENFYIRGDGTRVYYMTNEELVDVF-GKNFKIIQNGVDKRLIVNRKKRVKMYR 298
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Potential methyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 231 | ||||||
| 297743050 | 288 | unnamed protein product [Vitis vinifera] | 0.982 | 0.788 | 0.633 | 1e-82 | |
| 298204822 | 562 | unnamed protein product [Vitis vinifera] | 0.865 | 0.355 | 0.535 | 3e-66 | |
| 298204810 | 556 | unnamed protein product [Vitis vinifera] | 0.865 | 0.359 | 0.535 | 5e-66 | |
| 224088796 | 557 | predicted protein [Populus trichocarpa] | 0.870 | 0.360 | 0.532 | 6e-66 | |
| 225470654 | 562 | PREDICTED: uncharacterized protein LOC10 | 0.865 | 0.355 | 0.535 | 9e-66 | |
| 359490040 | 562 | PREDICTED: uncharacterized protein LOC10 | 0.865 | 0.355 | 0.535 | 1e-65 | |
| 255550085 | 499 | Actin-binding protein ABP140, putative [ | 0.865 | 0.400 | 0.535 | 2e-65 | |
| 343887267 | 564 | methyltransferase [Citrus unshiu] | 0.865 | 0.354 | 0.526 | 3e-65 | |
| 356554100 | 585 | PREDICTED: uncharacterized protein LOC10 | 0.865 | 0.341 | 0.521 | 8e-64 | |
| 357120783 | 554 | PREDICTED: uncharacterized protein LOC10 | 0.878 | 0.366 | 0.515 | 5e-63 |
| >gi|297743050|emb|CBI35917.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 161/254 (63%), Positives = 185/254 (72%), Gaps = 27/254 (10%)
Query: 1 SITTVQRRHRHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGN 60
S +R HR P N ++HYQ+ A KYWD FYKRH+NKFFKDRHYLEKDWG
Sbjct: 19 SFAAARRLHRRYPPQG----NLGSDDHYQNNATKYWDKFYKRHQNKFFKDRHYLEKDWGA 74
Query: 61 YFSDDSC-CPNGNPKVVLEVGCGAGNTIFPLV----------------------SHSEFR 97
YFSDD C + N KV+LEVGCGAGNTIFPLV S+ +FR
Sbjct: 75 YFSDDHCGTSSTNGKVLLEVGCGAGNTIFPLVAAYPKLYVHACDFSPLAIELVKSNVDFR 134
Query: 98 EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYIL 157
+RVNAFV +V +DDLS + PSSVDV+TLIFMLSAVSP KMPLILQN+K VLKP G +L
Sbjct: 135 GDRVNAFVYDVASDDLSDKIKPSSVDVITLIFMLSAVSPNKMPLILQNLKKVLKPHGVVL 194
Query: 158 VCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217
V DYAIGDFAQVKL DRNQ I ++FYVR DGTCSFYFSEDFLS LF AGF+TVD+NI+
Sbjct: 195 VRDYAIGDFAQVKLRDRNQKISENFYVRRDGTCSFYFSEDFLSNLFSRAGFTTVDVNIYC 254
Query: 218 KQIKNRSQDITMNR 231
KQI+NRSQ++TMNR
Sbjct: 255 KQIENRSQNVTMNR 268
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204822|emb|CBI25655.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/228 (53%), Positives = 165/228 (72%), Gaps = 28/228 (12%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
E Y+ +AKKYWD FYKRH+++FFKDRHYL+K+WG+YFS KV+LEVGCGAGN
Sbjct: 25 EKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHYFS------GAGRKVILEVGCGAGN 78
Query: 86 TIFPLV----------------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVD 123
TIFPLV +H +F E RV+AFVC++ DDLS +++PSSVD
Sbjct: 79 TIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFVCDLTVDDLSEHISPSSVD 138
Query: 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
++T+IF+LSAVSP+KMPL+LQNI+ V+KP+GY+L DYA GD AQ + ++Q I ++FY
Sbjct: 139 IITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGDLAQERFSCKDQKISENFY 198
Query: 184 VRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
VRGDGT +FYFS++FL++LF E GF ++ KQ++NRS++I MNR
Sbjct: 199 VRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSREIVMNR 246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204810|emb|CBI25643.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 122/228 (53%), Positives = 165/228 (72%), Gaps = 28/228 (12%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
E Y+ +AKKYWD FYKRH+++FFKDRHYL+K+WG+YFS KV+LEVGCGAGN
Sbjct: 25 EKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHYFS------GAGRKVILEVGCGAGN 78
Query: 86 TIFPLV----------------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVD 123
TIFPLV +H +F E RV+AFVC++ DDLS +++PSSVD
Sbjct: 79 TIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFVCDLTVDDLSEHISPSSVD 138
Query: 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
++T+IF+LSAVSP+KMPL+LQNI+ V+KP+GY+L DYA GD AQ + ++Q I ++FY
Sbjct: 139 IITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGDLAQERFSCKDQKISENFY 198
Query: 184 VRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
VRGDGT +FYFS++FL++LF E GF ++ KQ++NRS++I MNR
Sbjct: 199 VRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSREIVMNR 246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088796|ref|XP_002308544.1| predicted protein [Populus trichocarpa] gi|222854520|gb|EEE92067.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 122/229 (53%), Positives = 165/229 (72%), Gaps = 28/229 (12%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG 84
+E Y+ AKKYWD FYKRH++KFFKDRHYL+K+WG YF+ +VVLEVGCGAG
Sbjct: 29 KEKYERDAKKYWDVFYKRHQDKFFKDRHYLDKEWGQYFA------GKERRVVLEVGCGAG 82
Query: 85 NTIFPLV----------------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSV 122
NTIFPLV +H ++ E V AFVC++ DDLS+ ++PSSV
Sbjct: 83 NTIFPLVATYPNIFVHACDFSPRAVNLVKTHKDYLETCVGAFVCDLTVDDLSKEISPSSV 142
Query: 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSF 182
D+VT+IF+LSAVSP+KMPL+LQNIK V+KP+GY+L+ DYA+GD AQ +L ++Q I ++F
Sbjct: 143 DIVTMIFVLSAVSPEKMPLVLQNIKKVMKPNGYVLLRDYAVGDLAQERLTSKDQQISENF 202
Query: 183 YVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
YVRGDGT +FYFS +FL++LF + GF ++ + KQ++NRS++I MNR
Sbjct: 203 YVRGDGTRAFYFSNEFLTSLFKDNGFDVEELGLCCKQVENRSREIVMNR 251
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470654|ref|XP_002268214.1| PREDICTED: uncharacterized protein LOC100258883 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 122/228 (53%), Positives = 165/228 (72%), Gaps = 28/228 (12%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
E Y+ +AKKYWD FYKRH+++FFKDRHYL+K+WG+YFS KV+LEVGCGAGN
Sbjct: 25 EKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHYFS------VTGRKVILEVGCGAGN 78
Query: 86 TIFPLV----------------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVD 123
TIFPLV +H +F E RV+AFVC++ DDLS +++PSSVD
Sbjct: 79 TIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFVCDLTVDDLSEHISPSSVD 138
Query: 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
++T+IF+LSAVSP+KMPL+LQNI+ V+KP+GY+L DYA GD AQ + ++Q I ++FY
Sbjct: 139 IITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGDLAQERFSCKDQKISENFY 198
Query: 184 VRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
VRGDGT +FYFS++FL++LF E GF ++ KQ++NRS++I MNR
Sbjct: 199 VRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSREIVMNR 246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490040|ref|XP_002264245.2| PREDICTED: uncharacterized protein LOC100260809 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/228 (53%), Positives = 165/228 (72%), Gaps = 28/228 (12%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
E Y+ +AKKYWD FYKRH+++FFKDRHYL+K+WG+YFS KV+LEVGCGAGN
Sbjct: 25 EKYEREAKKYWDVFYKRHQDRFFKDRHYLDKEWGHYFS------VTGRKVILEVGCGAGN 78
Query: 86 TIFPLV----------------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVD 123
TIFPLV +H +F E RV+AFVC++ DDLS +++PSSVD
Sbjct: 79 TIFPLVATYPDIFVHACDFSPRAVDLVKTHKDFTENRVSAFVCDLTVDDLSEHISPSSVD 138
Query: 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
++T+IF+LSAVSP+KMPL+LQNI+ V+KP+GY+L DYA GD AQ + ++Q I ++FY
Sbjct: 139 IITMIFVLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGDLAQERFSCKDQKISENFY 198
Query: 184 VRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
VRGDGT +FYFS++FL++LF E GF ++ KQ++NRS++I MNR
Sbjct: 199 VRGDGTRAFYFSDEFLTSLFKENGFDVEELGFCCKQVENRSREIVMNR 246
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550085|ref|XP_002516093.1| Actin-binding protein ABP140, putative [Ricinus communis] gi|223544579|gb|EEF46095.1| Actin-binding protein ABP140, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/228 (53%), Positives = 162/228 (71%), Gaps = 28/228 (12%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
E Y+ AKKYWD FYK+H++KFFKDRHYL+K+WG YF+ KV+LEVGCGAGN
Sbjct: 28 EKYERDAKKYWDIFYKKHQDKFFKDRHYLDKEWGQYFT------GAGRKVILEVGCGAGN 81
Query: 86 TIFPLV----------------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVD 123
TIFPLV +H +F + +VNAF C++ DDLS+ V+PSSVD
Sbjct: 82 TIFPLVATYPDIFVHACDFSPRAVNLVKTHKDFNQSQVNAFACDLTIDDLSKEVSPSSVD 141
Query: 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
+VT+IF+LSAVSP+KMPL+LQNIK VLKP+G +L DYA+GD AQ + ++Q I ++FY
Sbjct: 142 IVTMIFVLSAVSPEKMPLVLQNIKKVLKPNGCVLFRDYAVGDLAQERFTCKDQKISENFY 201
Query: 184 VRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
VRGDGT +FYFS DFL++LF + GF +I + KQ++NRS+++ MNR
Sbjct: 202 VRGDGTRAFYFSNDFLTSLFKDNGFDVEEIGLCCKQVENRSRELVMNR 249
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|343887267|dbj|BAK61813.1| methyltransferase [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 162/228 (71%), Gaps = 28/228 (12%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
+ Y+ +AKKYWD FYKRH+++FFKDRHYL+K+WG YFS K VLEVGCGAGN
Sbjct: 35 DKYEREAKKYWDLFYKRHQDRFFKDRHYLDKEWGRYFS------GAGRKDVLEVGCGAGN 88
Query: 86 TIFPLV----------------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVD 123
TIFPL+ +H +F E V+ FVC++ +DDLSR ++PSS+D
Sbjct: 89 TIFPLIAAYPDVFVHACDFSPRAVNLVMTHKDFTETHVSTFVCDLTSDDLSRQISPSSID 148
Query: 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
+VT++F+LSAVSP+KM L+LQNIK VLKP GY+L DYAIGD AQ +L ++Q I ++FY
Sbjct: 149 IVTMVFVLSAVSPEKMSLVLQNIKKVLKPTGYVLFRDYAIGDLAQERLTGKDQKISENFY 208
Query: 184 VRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
VRGDGT +FYFS DFL++LF E GF ++ + KQ++NR++++ MNR
Sbjct: 209 VRGDGTRAFYFSNDFLTSLFKENGFDVEELGLCCKQVENRARELVMNR 256
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554100|ref|XP_003545387.1| PREDICTED: uncharacterized protein LOC100789229 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 160/228 (70%), Gaps = 28/228 (12%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
E Y+ +AK+YWD FYKRHK++FFKDRHYL+K+WG YFS G KV+LEVGCGAGN
Sbjct: 57 EKYEREAKRYWDVFYKRHKDRFFKDRHYLDKEWGEYFS------GGGRKVILEVGCGAGN 110
Query: 86 TIFPLV----------------------SHSEFREERVNAFVCNVVNDDLSRNVNPSSVD 123
TIFP++ +H +F+E V+AFV ++ DDL + PSSVD
Sbjct: 111 TIFPVIASNPDAFVYACDFSPRAIELVKTHEDFKESHVSAFVSDLTADDLCNEILPSSVD 170
Query: 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFY 183
+VT+IFMLSAVSP+KMPL+LQNI+ V+KP+GY+L DYA GD AQ + ++Q I D+FY
Sbjct: 171 IVTMIFMLSAVSPEKMPLVLQNIRKVIKPNGYVLFRDYATGDLAQERFSSKDQKISDNFY 230
Query: 184 VRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
VRGDGT ++YFS +FL+ LF E GF +++ KQ++NRS+++ MNR
Sbjct: 231 VRGDGTRAYYFSNEFLTNLFKENGFDVHKHHVYCKQVENRSRELIMNR 278
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357120783|ref|XP_003562104.1| PREDICTED: uncharacterized protein LOC100844747 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 158/229 (68%), Gaps = 26/229 (11%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG 84
+E Y+ A++YWD FYKRH++KFFKDRHYL+K+WG YF +G VVLEVGCGAG
Sbjct: 29 KEKYERDARRYWDIFYKRHEDKFFKDRHYLDKEWGKYFE----VQDGANMVVLEVGCGAG 84
Query: 85 NTIFPLVS----------------------HSEFREERVNAFVCNVVNDDLSRNVNPSSV 122
NTIFPL+S H +FR +RVNAF C++ ++ L+ + PSSV
Sbjct: 85 NTIFPLLSTYPDIFVHACDFSSRAVDLVKKHKDFRPDRVNAFACDITSEQLTEGMEPSSV 144
Query: 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSF 182
D+VT+IFMLSAV+P KMPL+LQN+K VLK G +L DYA GD AQ +L+ + Q I ++F
Sbjct: 145 DIVTMIFMLSAVAPDKMPLVLQNVKNVLKHGGRVLFRDYAFGDLAQERLMSKGQQISENF 204
Query: 183 YVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
YVRGDGT ++YFS ++L LF E GF+ +I +H K+++NRS D+ MNR
Sbjct: 205 YVRGDGTRAYYFSNEYLVDLFSECGFALEEICVHNKKVENRSLDLVMNR 253
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 231 | ||||||
| TAIR|locus:2057756 | 565 | AT2G26200 [Arabidopsis thalian | 0.891 | 0.364 | 0.477 | 3.1e-51 | |
| RGD|1359565 | 287 | Mettl6 "methyltransferase like | 0.593 | 0.477 | 0.4 | 9.3e-38 | |
| UNIPROTKB|Q6AXU8 | 287 | Mettl6 "Methyltransferase-like | 0.593 | 0.477 | 0.4 | 9.3e-38 | |
| MGI|MGI:1914261 | 282 | Mettl6 "methyltransferase like | 0.593 | 0.485 | 0.407 | 1.2e-37 | |
| UNIPROTKB|Q8TCB7 | 284 | METTL6 "Methyltransferase-like | 0.567 | 0.461 | 0.432 | 3.1e-37 | |
| POMBASE|SPBC3H7.11 | 248 | SPBC3H7.11 "actin binding meth | 0.601 | 0.560 | 0.340 | 4.4e-36 | |
| UNIPROTKB|B4DDX3 | 239 | METTL6 "Methyltransferase-like | 0.567 | 0.548 | 0.432 | 1.3e-32 | |
| UNIPROTKB|F1S1U3 | 411 | METTL8 "Uncharacterized protei | 0.649 | 0.364 | 0.302 | 1.3e-32 | |
| UNIPROTKB|F1N1F4 | 407 | METTL8 "Uncharacterized protei | 0.649 | 0.368 | 0.296 | 1.6e-32 | |
| UNIPROTKB|Q5ZHP8 | 370 | METTL2 "Methyltransferase-like | 0.692 | 0.432 | 0.355 | 6.7e-32 |
| TAIR|locus:2057756 AT2G26200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 106/222 (47%), Positives = 147/222 (66%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSC-------CPNGN---PKV 75
+ Y+ AKKYWD FYK H ++FFKDRHYL+K+W +YFS C GN P +
Sbjct: 34 DKYERDAKKYWDIFYKHHGDRFFKDRHYLDKEWNSYFSVSGKSVILEVGCGAGNTIFPLI 93
Query: 76 -----VLEVGCGAGNTIFPLV-SHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129
+ C LV +H E+ E RV AF C++ D L ++++PSSVD+VT+IF
Sbjct: 94 ATYPDIFVYACDFSPRAVELVKAHDEYTETRVCAFACDLTGDGLDKHISPSSVDIVTMIF 153
Query: 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGT 189
+LSAVSP+KM +LQNI+ VLKP+G IL DYA+GD AQ + ++Q I ++FYVRGDGT
Sbjct: 154 VLSAVSPEKMSSVLQNIRKVLKPNGCILFRDYAVGDLAQERFSGKDQRISENFYVRGDGT 213
Query: 190 CSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
+FYFS +FL TLF E GF ++++ KQ++NRS+++ MNR
Sbjct: 214 RAFYFSNEFLETLFSEQGFEVEELDVCCKQVENRSRELVMNR 255
|
|
| RGD|1359565 Mettl6 "methyltransferase like 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 56/140 (40%), Positives = 90/140 (64%)
Query: 93 HSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKP 152
H + ER F C++ DDL ++ P SVD VTLIF+LSAV P+KM L+L N+ VLKP
Sbjct: 122 HPLYNAERCKVFQCDLTRDDLLDHIPPESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKP 181
Query: 153 DGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212
+L DY + D A ++ +G++FYVR DGT S++F+++FL+ LF++AG+ V
Sbjct: 182 GRSVLFRDYGLNDHAMLRF-KAGSKLGENFYVRQDGTRSYFFTDEFLAKLFVDAGYEEV- 239
Query: 213 INIHL-KQIKNRSQDITMNR 231
+N ++ ++ N+ + + + R
Sbjct: 240 VNEYVFRETVNKKEGLCVPR 259
|
|
| UNIPROTKB|Q6AXU8 Mettl6 "Methyltransferase-like protein 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 56/140 (40%), Positives = 90/140 (64%)
Query: 93 HSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKP 152
H + ER F C++ DDL ++ P SVD VTLIF+LSAV P+KM L+L N+ VLKP
Sbjct: 122 HPLYNAERCKVFQCDLTRDDLLDHIPPESVDAVTLIFVLSAVHPEKMHLVLLNVYKVLKP 181
Query: 153 DGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212
+L DY + D A ++ +G++FYVR DGT S++F+++FL+ LF++AG+ V
Sbjct: 182 GRSVLFRDYGLNDHAMLRF-KAGSKLGENFYVRQDGTRSYFFTDEFLAKLFVDAGYEEV- 239
Query: 213 INIHL-KQIKNRSQDITMNR 231
+N ++ ++ N+ + + + R
Sbjct: 240 VNEYVFRETVNKKEGLCVPR 259
|
|
| MGI|MGI:1914261 Mettl6 "methyltransferase like 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 57/140 (40%), Positives = 90/140 (64%)
Query: 93 HSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKP 152
H + ER F C++ DDL +V P SVD VTLIF+LSAV P+KM L+L N+ VLKP
Sbjct: 122 HPLYNAERCKVFQCDLTRDDLLDHVPPESVDAVTLIFVLSAVHPEKMRLVLLNVYKVLKP 181
Query: 153 DGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212
+L DY + D A ++ +G++FYVR DGT S++F+++FL+ LF++AG+ V
Sbjct: 182 GRSVLFRDYGLNDHAMLRF-KAGSKLGENFYVRQDGTRSYFFTDEFLAQLFVDAGYEEV- 239
Query: 213 INIHL-KQIKNRSQDITMNR 231
+N ++ ++ N+ + + + R
Sbjct: 240 VNEYVFRETVNKKEGLCVPR 259
|
|
| UNIPROTKB|Q8TCB7 METTL6 "Methyltransferase-like protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 58/134 (43%), Positives = 88/134 (65%)
Query: 99 ERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158
ER F C++ DDL +V P SVDVV LIF+LSAV P KM L+LQNI VLKP +L
Sbjct: 128 ERCKVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLF 187
Query: 159 CDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL- 217
DY + D A ++ + +G++FYVR DGT S++F++DFL+ LF++ G+ V +N ++
Sbjct: 188 RDYGLYDHAMLRF-KASSKLGENFYVRQDGTRSYFFTDDFLAQLFMDTGYEEV-VNEYVF 245
Query: 218 KQIKNRSQDITMNR 231
++ N+ + + + R
Sbjct: 246 RETVNKKEGLCVPR 259
|
|
| POMBASE|SPBC3H7.11 SPBC3H7.11 "actin binding methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 48/141 (34%), Positives = 80/141 (56%)
Query: 93 HSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKP 152
HS + E RV FV ++ D L + + +D +T IF+LSA+ +K ++N+ +V+KP
Sbjct: 98 HSCYNENRVFPFVNDITEDSLLEVLGSACIDTLTAIFVLSAIPREKQLRSIKNLASVIKP 157
Query: 153 DGYILVCDYAIGDFAQVKLLDRNQ--MIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210
G+++ DY GDFAQ K + MI + +VR DGT S +F E+ ++ AGF
Sbjct: 158 GGHLVFRDYCDGDFAQEKFMTSGDPSMIDEQTFVRQDGTLSLFFREEDIAEWMKSAGFGL 217
Query: 211 VDINIHLKQIKNRSQDITMNR 231
V ++ + + NR +++ M R
Sbjct: 218 VTLDRVNRTVDNRKRNLNMKR 238
|
|
| UNIPROTKB|B4DDX3 METTL6 "Methyltransferase-like protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 58/134 (43%), Positives = 88/134 (65%)
Query: 99 ERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158
ER F C++ DDL +V P SVDVV LIF+LSAV P KM L+LQNI VLKP +L
Sbjct: 83 ERCKVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLF 142
Query: 159 CDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL- 217
DY + D A ++ + +G++FYVR DGT S++F++DFL+ LF++ G+ V +N ++
Sbjct: 143 RDYGLYDHAMLRF-KASSKLGENFYVRQDGTRSYFFTDDFLAQLFMDTGYEEV-VNEYVF 200
Query: 218 KQIKNRSQDITMNR 231
++ N+ + + + R
Sbjct: 201 RETVNKKEGLCVPR 214
|
|
| UNIPROTKB|F1S1U3 METTL8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 46/152 (30%), Positives = 83/152 (54%)
Query: 81 CGAGNTIFPLV-SHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKM 139
C + LV SH +R + AFV +V +D L+ +DV+ L+F+LS++ P +M
Sbjct: 233 CDFASGAVELVKSHPSYRAAQCCAFVHDVCDDGLAYPFPDGILDVILLVFVLSSIHPDRM 292
Query: 140 PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFL 199
+++ + +LKP G +L DY D Q++ R + ++FYVRGDGT +++F++ +
Sbjct: 293 QGVVKQLSKLLKPGGMLLFRDYGRYDKTQLRF-KRGHCLSENFYVRGDGTRAYFFTKGEV 351
Query: 200 STLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
+F +AG + + NR + + M+R
Sbjct: 352 HDMFCKAGLDEKQNLVDRRLQVNRKKKVKMHR 383
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| UNIPROTKB|F1N1F4 METTL8 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 45/152 (29%), Positives = 82/152 (53%)
Query: 81 CGAGNTIFPLV-SHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKM 139
C + LV SH+ +R + AFV +V + L ++DV+ L+F+LS++ P +M
Sbjct: 229 CDFASGAVELVKSHASYRAAQCCAFVHDVCDHGLPYPFPDGTLDVILLVFVLSSIHPDRM 288
Query: 140 PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFL 199
++ + +LKP G +L DY D Q++ R + ++FYVRGDGT +++F++ +
Sbjct: 289 QGVINRLSKLLKPGGMLLFRDYGRYDKTQLRF-KRGHCLSENFYVRGDGTRAYFFTKGEV 347
Query: 200 STLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
+F +AG + + NR + + M+R
Sbjct: 348 HNMFCKAGLDEKQNLVDRRLQVNRKKKVKMHR 379
|
|
| UNIPROTKB|Q5ZHP8 METTL2 "Methyltransferase-like protein 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 6.7e-32, Sum P(2) = 6.7e-32
Identities = 58/163 (35%), Positives = 90/163 (55%)
Query: 70 NGNPKVVLEVGCGAGNTIFPLV-SHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128
N +P + + C T LV S+ E+ R AFV ++ ND + S+D+V LI
Sbjct: 195 NNDPGLFVYC-CDFSTTAVDLVQSNVEYDSSRCFAFVHDLCNDQSPFPMPDESLDIVILI 253
Query: 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG 188
F+LSA+ P+KM ++ + +LKP G IL+ DY D AQ++ + Q + +FYVRGDG
Sbjct: 254 FVLSAILPEKMQCVINKLSRLLKPGGMILLRDYGRYDLAQLRF-KKGQCLSANFYVRGDG 312
Query: 189 TCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231
T ++F++D L LF AG + + + NR + +TM R
Sbjct: 313 TRVYFFTQDELDDLFTRAGLQKIQNLVDRRLQVNRGKQMTMYR 355
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00034140001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (286 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 231 | |||
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 3e-08 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 9e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 5e-06 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 0.001 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.002 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.003 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 0.003 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-08
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 27/146 (18%)
Query: 73 PKVVLEVGCGAGNTIFPLVSHSEFREE--RVNAF-------VCNVVNDDLSRNVNPSSVD 123
VL++GCG G + RE V + + D V D
Sbjct: 23 GGRVLDIGCGTGILL------RLLRERGFDVTGVDPSPAAVLIFSLFDAPDPAVLAGKYD 76
Query: 124 VVTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSF 182
++T +L + P + LQ ++ +LKP G +L+ D A++ +
Sbjct: 77 LITAFEVLEHLPDPPAL---LQQLRELLKPGGVLLISTPLADDDARL--------FANWH 125
Query: 183 YVRGDGTCSFYFSEDFLSTLFLEAGF 208
Y+R T ++SE+ L L +AGF
Sbjct: 126 YLRPRNTHISFYSEESLKRLLEKAGF 151
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-07
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 24/101 (23%)
Query: 77 LEVGCGAGNTIFPLVSHSEF---------------------REERVNAFVCNVVNDDLSR 115
L++GCG G + L+ ++A + D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI- 59
Query: 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYI 156
+++P S DVV +L + +L+N++ +LKP G +
Sbjct: 60 DLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-06
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 20/105 (19%)
Query: 76 VLEVGCGAGNTIFPLVS-----------------HSEFREERVNAFVCNVVNDDLSRNV- 117
VL++GCG G L S + + A V+ D
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 118 -NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161
S DV+ L + + + L+ + +LKP G +++
Sbjct: 62 EADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.001
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 25/113 (22%)
Query: 73 PKVVLEVGCGAGNTIFPL-------------------VSHSEFREERVNAFVCNVVNDDL 113
VL++GCG G F L + ++ +++ + D+
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDI 63
Query: 114 ----SRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162
+ +S DVV +L+ + +L+ I VLKP G ++V D
Sbjct: 64 EELPQLQLEDNSFDVVISNEVLNHL--PDPDKVLEEIIRVLKPGGVLIVSDPV 114
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 30/111 (27%)
Query: 73 PKVVLEVGCGAGNTIFPLVSHS--------EFREERV-----NA---------FVCNVVN 110
VL++GCG G+ L + E + NA FV
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAP 61
Query: 111 DDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161
D L D V + + +L + ++LKP G +++
Sbjct: 62 DALD---LLEGFDAVFIGGGGGD-----LLELLDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.003
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 76 VLEVGCGAGNTIFPLV----SH---SEFREERV---------NAFVCNVVNDDLSRN-VN 118
+L++GCG G + L S + +E + V D
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 119 PSSVDVVTLIFM-LSAVSPKKMPLILQNIKAVLKPDG 154
S D+V + L +SPK++ +L+ +L+P G
Sbjct: 61 EGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.7 bits (83), Expect = 0.003
Identities = 23/104 (22%), Positives = 31/104 (29%), Gaps = 34/104 (32%)
Query: 77 LEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRNV------------------- 117
L+VGCG G L V DLS +
Sbjct: 1 LDVGCGTGLLAEALARR----------GGARVTGVDLSPEMLALARKRAPRKFVVGDAED 50
Query: 118 ---NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158
S DVV +L + L+ I VLKP G +++
Sbjct: 51 LPFPDESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 231 | |||
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 100.0 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.82 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.8 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.8 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.8 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.75 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.74 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.74 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.72 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.7 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.68 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.68 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.67 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.67 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.66 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.65 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.64 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.62 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.61 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.61 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.61 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.61 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.59 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.59 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.58 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.58 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.58 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.58 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.57 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.57 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.57 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.57 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.56 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.56 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.55 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.54 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.52 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.51 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.51 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.51 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.5 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.5 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.49 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.49 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.48 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.48 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.47 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.47 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.46 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.43 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.42 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.42 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.4 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.4 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.4 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.38 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.37 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.36 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.34 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.33 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.32 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.31 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.28 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.27 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.26 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.26 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.24 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.21 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.18 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.17 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 99.16 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.15 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.15 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.14 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.12 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.09 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.09 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.09 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.09 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.07 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.07 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.06 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.03 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.03 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.03 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.02 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.01 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.0 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.99 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.98 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.97 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.97 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.97 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.97 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.97 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.96 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.94 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.92 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.91 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.91 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.89 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.89 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.89 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.88 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.88 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.87 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.87 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.84 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.84 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.81 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.8 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.8 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.78 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.75 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.73 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.72 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.7 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.7 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.7 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.69 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.68 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.68 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.68 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.65 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.63 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.62 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.59 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.59 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.56 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.55 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.52 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.5 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.5 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.49 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.47 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.47 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.46 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.46 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.45 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.45 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.43 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.42 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.41 | |
| PLN02366 | 308 | spermidine synthase | 98.4 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.4 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.38 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.32 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 98.32 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.32 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.29 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.25 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.24 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.21 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.21 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.21 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.17 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.16 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.13 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.11 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.11 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.1 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.05 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.03 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.02 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 98.0 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.94 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.91 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.9 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.9 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.88 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.87 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.87 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.86 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.85 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.85 | |
| PLN02476 | 278 | O-methyltransferase | 97.84 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.82 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.8 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.79 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.63 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.6 | |
| PLN02823 | 336 | spermine synthase | 97.51 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.46 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.46 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.4 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.35 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.35 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.34 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.33 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.33 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.32 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.32 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.31 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.3 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.25 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.22 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.2 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.19 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.15 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.06 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.06 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.04 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.04 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.01 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.01 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.98 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.95 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 96.85 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.78 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.73 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.67 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.58 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.54 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.48 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.45 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 96.41 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.36 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.36 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.35 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.24 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.12 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.08 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.05 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 95.99 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.92 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.91 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 95.68 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.55 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 95.42 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 95.4 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.28 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.21 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.1 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.08 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 95.04 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.0 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 94.99 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.89 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.65 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.61 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 94.43 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.03 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.86 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.73 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 93.64 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 93.16 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.03 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 92.98 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 92.97 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 92.95 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 92.91 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 92.67 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.66 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 92.52 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 92.41 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 92.19 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 91.8 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.3 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 91.06 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 90.8 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 90.62 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 90.54 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 90.52 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 90.51 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 90.34 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 90.26 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 90.19 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 89.91 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 89.79 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.66 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 89.14 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 88.61 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 87.68 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 86.36 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 85.39 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 84.01 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 83.99 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 83.77 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 83.66 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 81.63 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 80.26 |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=215.40 Aligned_cols=209 Identities=41% Similarity=0.776 Sum_probs=181.8
Q ss_pred CCCCcchhHHHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhc-----
Q 045799 18 QPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVS----- 92 (231)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~----- 92 (231)
.+-...+...|..++++|||.+|+.+.++|+++++|+.+++++++... ..+..+|||||||.|.+...++.
T Consensus 21 ~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~----~~~~~~ilEvGCGvGNtvfPll~~~~n~ 96 (264)
T KOG2361|consen 21 SRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD----EKSAETILEVGCGVGNTVFPLLKTSPNN 96 (264)
T ss_pred cccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc----ccChhhheeeccCCCcccchhhhcCCCC
Confidence 334445677999999999999999999999999999999999999754 34444899999999999999982
Q ss_pred -------------------CccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCC
Q 045799 93 -------------------HSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 93 -------------------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~g 153 (231)
+..++...+.....|++.+.+..+.+.+++|+|+++++|..++++....++.+++++||||
T Consensus 97 ~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 97 RLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred CeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 2233334444455555555544567789999999999999999999999999999999999
Q ss_pred eEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeeeecccccccccC
Q 045799 154 GYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITMNR 231 (231)
Q Consensus 154 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~ 231 (231)
|.+++.|++..++.+.++. ..+.+..++|.+++|+..++|+.+++.+++.++||..++..+..+.++||++.+.|.|
T Consensus 177 G~llfrDYg~~DlaqlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~R 253 (264)
T KOG2361|consen 177 GSLLFRDYGRYDLAQLRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYR 253 (264)
T ss_pred cEEEEeecccchHHHHhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccce
Confidence 9999999999999999888 6788999999999999999999999999999999999999999999999999999987
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=144.70 Aligned_cols=186 Identities=14% Similarity=0.177 Sum_probs=114.9
Q ss_pred CcchhHHHhhHHHhhHHHH------HHhccCCcccchhhhHHhhcccccCC-CCCCCCCCCeEEEEcCCCCcchHHHhcC
Q 045799 21 NYPLEEHYQSKAKKYWDGF------YKRHKNKFFKDRHYLEKDWGNYFSDD-SCCPNGNPKVVLEVGCGAGNTIFPLVSH 93 (231)
Q Consensus 21 ~~~~~~~~~~~~~~~w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iLdvGcG~G~~~~~l~~~ 93 (231)
+......|+..+..||+.. +..+..+ ..++...+...+... ......++.+|||||||+|.++..++..
T Consensus 77 ~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R----~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~ 152 (322)
T PLN02396 77 NEDELAKFSAIADTWWHSEGPFKPLHQMNPTR----LAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARM 152 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCchHHHHhChHH----HHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHc
Confidence 4455778888888999841 1111111 112222221111100 0011245679999999999999888742
Q ss_pred ccccccceeeeeecCCccccc------------------------CCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHh
Q 045799 94 SEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAV 149 (231)
Q Consensus 94 ~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~ 149 (231)
+.+++++|.+..++. .++.+++||+|++.++++|+ .++..++++++++
T Consensus 153 ------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv--~d~~~~L~~l~r~ 224 (322)
T PLN02396 153 ------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV--ANPAEFCKSLSAL 224 (322)
T ss_pred ------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc--CCHHHHHHHHHHH
Confidence 346677777755432 13356799999999999999 7899999999999
Q ss_pred cCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeee
Q 045799 150 LKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQ 219 (231)
Q Consensus 150 Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~ 219 (231)
|||||.+++.+.+............. .....+...+...+..+++++++..+|+++||+++++.-....
T Consensus 225 LkPGG~liist~nr~~~~~~~~i~~~-eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~~~ 293 (322)
T PLN02396 225 TIPNGATVLSTINRTMRAYASTIVGA-EYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFVYN 293 (322)
T ss_pred cCCCcEEEEEECCcCHHHHHHhhhhH-HHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeEEc
Confidence 99999999998765432211000000 0000010011111234789999999999999999988555443
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=136.48 Aligned_cols=138 Identities=22% Similarity=0.331 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||||||||.++..++.... ..+++++|++..|+. .||++++||+|.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g----~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG----TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC----CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence 4789999999999999999985543 446788888888764 2899999999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh------hhhc-cccccccceEEeC-------CCeEEEe
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV------KLLD-RNQMIGDSFYVRG-------DGTCSFY 193 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~-------~~~~~~~ 193 (231)
.+.|+++ .+...+|++++|+|||||.+++.+++.+..... .+.. ..+.+.. +.... ......+
T Consensus 126 ~fglrnv--~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~-~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 126 SFGLRNV--TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGK-LVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred eehhhcC--CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhce-eeecChHHHHHHHHHHHhC
Confidence 9999999 789999999999999999999999888754311 0010 0111111 11000 0111236
Q ss_pred eCHHHHHHHHHHcCceEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+.+++..+++++||+.+..+.
T Consensus 203 p~~~~l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVRYEN 224 (238)
T ss_pred CCHHHHHHHHHhcCceEEeeEe
Confidence 8899999999999999887443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-20 Score=137.05 Aligned_cols=185 Identities=17% Similarity=0.174 Sum_probs=125.7
Q ss_pred CCCcchhHHHhhHHHhhHHHHHHhccCCcccch--hhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccc
Q 045799 19 PQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDR--HYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEF 96 (231)
Q Consensus 19 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~ 96 (231)
.-+..+.+.|..-+..||+.-.+.....-...- .++.......+ ..++++|||||||-|.++..++..
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~-------~l~g~~vLDvGCGgG~Lse~mAr~--- 80 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRF-------DLPGLRVLDVGCGGGILSEPLARL--- 80 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhccc-------CCCCCeEEEecCCccHhhHHHHHC---
Confidence 344556789999999999864432222211111 13333322222 147899999999999999999865
Q ss_pred cccceeeeeecCCcccccC----------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe
Q 045799 97 REERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 97 ~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
+.+++++|+++.+++. ....++||+|+|..|++|+ +++..+++.+.+++||||
T Consensus 81 ---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv--~dp~~~~~~c~~lvkP~G 155 (243)
T COG2227 81 ---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV--PDPESFLRACAKLVKPGG 155 (243)
T ss_pred ---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc--CCHHHHHHHHHHHcCCCc
Confidence 4578899998877642 1123799999999999999 889999999999999999
Q ss_pred EEEEEeccCCchhhhhhhccccccccceEEeCCCeE--EEeeCHHHHHHHHHHcCceEEEEEEEeeeee
Q 045799 155 YILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC--SFYFSEDFLSTLFLEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 155 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ 221 (231)
.+++++.+..-..........+.+.. + ...+++ ..++.++++...+.++|+.+....-......
T Consensus 156 ~lf~STinrt~ka~~~~i~~ae~vl~-~--vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~ 221 (243)
T COG2227 156 ILFLSTINRTLKAYLLAIIGAEYVLR-I--VPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPL 221 (243)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHH-h--cCCcchhHHHhcCHHHHHHhcccCCceEEeecceEeccc
Confidence 99999887664433211111111111 1 122332 3478899999999999999998766554443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=132.04 Aligned_cols=127 Identities=24% Similarity=0.380 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-------------cCCCCCCCeeEEEEeeeeeccCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-------------SRNVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-------------~~~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
.++.+|||||||+|.++..++.. +.++.++|+++.++ ....++++||+|++..+|+|+ .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~--~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL--P 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGS--S
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhc--c
Confidence 67899999999999999888543 34788999986543 112466899999999999999 6
Q ss_pred CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 138 KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
++..+++++.++|||||++++.++.........+... ... ...+.+..+++.++|.++++++||++++
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW-RYD------RPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC-CGT------CHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc-CCc------CccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 8999999999999999999999877643211111110 000 0000223578999999999999999986
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-19 Score=135.74 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||||.++..++.... ....++++|+++.|+.. |+++++||+|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~---~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVG---PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTC 122 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCC---CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEH
Confidence 6788999999999999988874321 13367888888877642 678999999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh-----h----hc-cccccccc--eEEeCCCeEEEeeC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK-----L----LD-RNQMIGDS--FYVRGDGTCSFYFS 195 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~-----~----~~-~~~~~~~~--~~~~~~~~~~~~~~ 195 (231)
.+.++++ +++.+.+++++|+|||||.+++.+++.+...... + .+ .+..+... .|..-......+.+
T Consensus 123 ~fglrn~--~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 123 SFGLRNF--PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp ES-GGG---SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------------------------
T ss_pred HhhHHhh--CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccc
Confidence 9999999 7899999999999999999999998887643211 0 00 01111111 01111122235788
Q ss_pred HHHHHHHHHHcCceEEEEEEE
Q 045799 196 EDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
.+++.++|+++||+.++....
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 999999999999998876543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-18 Score=141.78 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=94.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... +.+++++|+++.++. .++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-----g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-----GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEE
Confidence 567899999999999998887432 234556665544321 256788999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh--hhcc----ccccccceEEeCCCeEEEeeCHHHHH
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK--LLDR----NQMIGDSFYVRGDGTCSFYFSEDFLS 200 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (231)
+..+++|+ .+...++++++++|||||.+++.++......... .... ...+...++ ...+.+.+++.
T Consensus 192 s~~~~~h~--~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~------~p~~~s~~~~~ 263 (340)
T PLN02244 192 SMESGEHM--PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY------LPAWCSTSDYV 263 (340)
T ss_pred ECCchhcc--CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc------CCCCCCHHHHH
Confidence 99999999 7789999999999999999999876543221100 0000 000111111 12246899999
Q ss_pred HHHHHcCceEEEEEEEeeee
Q 045799 201 TLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 201 ~~l~~~Gf~~~~~~~~~~~~ 220 (231)
++++++||+.+++..+...+
T Consensus 264 ~~l~~aGf~~v~~~d~s~~v 283 (340)
T PLN02244 264 KLAESLGLQDIKTEDWSEHV 283 (340)
T ss_pred HHHHHCCCCeeEeeeCcHHH
Confidence 99999999999988766543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-18 Score=131.80 Aligned_cols=177 Identities=18% Similarity=0.271 Sum_probs=111.3
Q ss_pred HHHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeee
Q 045799 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFV 105 (231)
Q Consensus 26 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~ 105 (231)
..|+..+..|=+.+|......... ..+...+..++..+ ..++.+|||+|||+|.++..++.. +.++++
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~--~~~~~~~~~~l~~l----~~~~~~vLDiGcG~G~~a~~la~~------g~~v~~ 71 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQ--AILWQDLDRLLAEL----PPRPLRVLDAGGGEGQTAIKLAEL------GHQVIL 71 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHH--HHHHHHHHHHHHhc----CCCCCEEEEeCCCchHHHHHHHHc------CCEEEE
Confidence 356666777777666544333221 12233334444433 245679999999999999988854 336677
Q ss_pred ecCCcccccC-------------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 106 CNVVNDDLSR-------------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 106 ~D~~~~~~~~-------------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|+++.++.. ++.+++||+|++..+++|+ +++..+++++.++|||||++++..
T Consensus 72 vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 72 CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 7777655321 2346799999999999999 788999999999999999999876
Q ss_pred ccCCchhhhhhh-ccccccccceEEe--CCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 161 YAIGDFAQVKLL-DRNQMIGDSFYVR--GDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++.......... ............. ........++++++.++|+++||+++...-+
T Consensus 150 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 150 YNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred ECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeE
Confidence 665432111000 0000000000000 0001123578999999999999999876543
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=130.94 Aligned_cols=141 Identities=20% Similarity=0.265 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.|+. .++++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~---~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVG---SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeE
Confidence 5678999999999998877763211 0124566666655431 2567789999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh-----c-cccccccceEEeC-----CCeEEEe
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL-----D-RNQMIGDSFYVRG-----DGTCSFY 193 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~-----~~~~~~~ 193 (231)
|++.+++||+ +++..++++++++|||||.+++.++..+........ . ....+...+.... ......+
T Consensus 149 V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 149 ITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EEEecccccC--CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999999 789999999999999999999999877643211100 0 0000000000000 0011246
Q ss_pred eCHHHHHHHHHHcCceEEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++.+++.++++++||+.++....
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~ 249 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEI 249 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEc
Confidence 89999999999999998876553
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-18 Score=128.95 Aligned_cols=180 Identities=18% Similarity=0.233 Sum_probs=116.9
Q ss_pred chhHHHhhHHHhhHHHHHHhccCCccc-c-hhhhHHhhcccccC-CCCCCCCCCCeEEEEcCCCCcchHHHhcCcccccc
Q 045799 23 PLEEHYQSKAKKYWDGFYKRHKNKFFK-D-RHYLEKDWGNYFSD-DSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREE 99 (231)
Q Consensus 23 ~~~~~~~~~~~~~w~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~ 99 (231)
....+|...+.++|+.--.+..-.-.+ . ..|+...+...... ....+..-+++|||+|||+|.++.+|+..
T Consensus 37 ~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArl------ 110 (282)
T KOG1270|consen 37 DEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARL------ 110 (282)
T ss_pred HHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhh------
Confidence 668899999999999743332211111 1 11333333222211 10001122578999999999999999855
Q ss_pred ceeeeeecCCcccccC-------------C------C-------CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCC
Q 045799 100 RVNAFVCNVVNDDLSR-------------N------V-------NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~-------------~------~-------~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~g 153 (231)
+.++.++|+++.+++. + + ..+.||+|+|..+++|+ +++..++..+.+.|||+
T Consensus 111 ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevleHV--~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 111 GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLEHV--KDPQEFLNCLSALLKPN 188 (282)
T ss_pred CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHHHH--hCHHHHHHHHHHHhCCC
Confidence 4578889988877642 0 0 12469999999999999 99999999999999999
Q ss_pred eEEEEEeccCCchhhhhhhccccccccceEEeCCCeE--EEeeCHHHHHHHHHHcCceEEEE
Q 045799 154 GYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC--SFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 154 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
|.+++.+.+..-.....-....+.+.. +-..|++ ..|.+++++..+++.+++.+..+
T Consensus 189 G~lfittinrt~lS~~~~i~~~E~vl~---ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 189 GRLFITTINRTILSFAGTIFLAEIVLR---IVPKGTHTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred CceEeeehhhhHHHhhccccHHHHHHH---hcCCCCcCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 999999877654332110000000000 1122332 34789999999999999887765
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-17 Score=129.31 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=93.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEe
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLI 128 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~ 128 (231)
..++.+|||||||+|..+..++... +.+++++|+++.++ ..++++++||+|++.
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY-----GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSR 124 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEh
Confidence 3678899999999999998886321 23455666554332 124567899999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|++.+++..++++++++|||||.+++.++........... ....+.. ....+.+..++.++|+++||
T Consensus 125 ~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~l~~aGF 195 (263)
T PTZ00098 125 DAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEE-FKAYIKK--------RKYTLIPIQEYGDLIKSCNF 195 (263)
T ss_pred hhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHH-HHHHHHh--------cCCCCCCHHHHHHHHHHCCC
Confidence 99999865689999999999999999999988755432110000 0000000 01234688999999999999
Q ss_pred eEEEEEEEe
Q 045799 209 STVDINIHL 217 (231)
Q Consensus 209 ~~~~~~~~~ 217 (231)
+++++....
T Consensus 196 ~~v~~~d~~ 204 (263)
T PTZ00098 196 QNVVAKDIS 204 (263)
T ss_pred CeeeEEeCc
Confidence 999876543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=123.06 Aligned_cols=148 Identities=17% Similarity=0.229 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++..........+++++|+++.++.. +.++++||+|+++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 456899999999999888776321111123467888887766521 235679999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCC--eEEEeeCHHHHHHHHHHcCc
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG--TCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~Gf 208 (231)
+||+++++...++++++++++ |.+++.+...+......+...........+...++ ....+++.+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 999965556789999999998 66777777766433322221111111122222222 22357999999999999 99
Q ss_pred eEEEEEEEeeeee
Q 045799 209 STVDINIHLKQIK 221 (231)
Q Consensus 209 ~~~~~~~~~~~~~ 221 (231)
++.....+....+
T Consensus 216 ~~~~~~~~~~~~~ 228 (232)
T PRK06202 216 RVERQWPFRYLLV 228 (232)
T ss_pred eEEeccceeeEEE
Confidence 9999887776654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=121.75 Aligned_cols=139 Identities=16% Similarity=0.065 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~~~~~fD~ii~~~~l~~~~ 135 (231)
.++.+|||||||+|.++..++... . +.+++++|+++.++.. ..++++||+|++..++||+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~--p--~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~- 102 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW--P--GAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAALQWV- 102 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC--C--CCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhhhhC-
Confidence 567899999999999998887432 1 3467888888766531 1245799999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc---cccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 136 PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD---RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
.++..+++++++.|||||.+++..+............ ....+..............+.+.+++.++|+++||++..
T Consensus 103 -~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 103 -PEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred -CCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 6789999999999999999998754321111100000 000010000000000112356899999999999998665
Q ss_pred EEE
Q 045799 213 INI 215 (231)
Q Consensus 213 ~~~ 215 (231)
...
T Consensus 182 ~~~ 184 (255)
T PRK14103 182 WET 184 (255)
T ss_pred Eee
Confidence 544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=125.51 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=91.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++.... ..++++|.+..++. .++ +++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~-----~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA-----KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-----CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 4578999999999999988874321 13566666553321 133 57899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++|+ .++..+++++++.|+|||.+++.++...........+ ...|... .......+..++.++|+++
T Consensus 195 s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p------~~~y~~~-~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 195 SMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP------GDRYAKM-RNVYFIPSVPALKNWLERA 265 (322)
T ss_pred ECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc------hhHHhcC-ccceeCCCHHHHHHHHHHc
Confidence 99999999 7899999999999999999998765433222111110 0000000 0011245889999999999
Q ss_pred CceEEEEEEEeee
Q 045799 207 GFSTVDINIHLKQ 219 (231)
Q Consensus 207 Gf~~~~~~~~~~~ 219 (231)
||+++++......
T Consensus 266 GF~~i~~~~~~~t 278 (322)
T PRK15068 266 GFKDVRIVDVSVT 278 (322)
T ss_pred CCceEEEEeCCCC
Confidence 9999998765543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=121.14 Aligned_cols=142 Identities=21% Similarity=0.269 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.++. .++++++||+|++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVG---PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEE
Confidence 5678999999999999988863311 1224566666544321 1356789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh---------cc-ccccccceEE--eCCCeEEEeeC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL---------DR-NQMIGDSFYV--RGDGTCSFYFS 195 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~---------~~-~~~~~~~~~~--~~~~~~~~~~~ 195 (231)
.++++++ ++...+++++.++|+|||.+++.+...++....... +. ...+...+.. ........+++
T Consensus 121 ~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
T TIGR02752 121 GFGLRNV--PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPG 198 (231)
T ss_pred ecccccC--CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCC
Confidence 9999999 788999999999999999999887665443211000 00 0000000000 00011124678
Q ss_pred HHHHHHHHHHcCceEEEEEEEe
Q 045799 196 EDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
.+++.++|+++||+++++....
T Consensus 199 ~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 199 MDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHHHHHcCCCeeEEEEcc
Confidence 9999999999999999876654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-16 Score=123.99 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CC-CCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NV-NPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~-~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++.... ..++++|.+..++.. .+ ...+||+|++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~-----~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s 194 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA-----KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFS 194 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-----CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEE
Confidence 5678999999999999887764311 146788877654310 01 2358999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+++|+ .++..++++++++|+|||.+++.+............+. .. +... ......++..++.++|+++|
T Consensus 195 ~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~r-----y~k~-~nv~flpS~~~L~~~L~~aG 265 (314)
T TIGR00452 195 MGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-DR-----YAKM-KNVYFIPSVSALKNWLEKVG 265 (314)
T ss_pred cchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-HH-----HHhc-cccccCCCHHHHHHHHHHCC
Confidence 9999999 78999999999999999999997654332111000000 00 0000 00123468999999999999
Q ss_pred ceEEEEEEEeeee
Q 045799 208 FSTVDINIHLKQI 220 (231)
Q Consensus 208 f~~~~~~~~~~~~ 220 (231)
|+.+++.......
T Consensus 266 F~~V~i~~~~~tt 278 (314)
T TIGR00452 266 FENFRILDVLKTT 278 (314)
T ss_pred CeEEEEEeccCCC
Confidence 9999877655543
|
Known examples to date are restricted to the proteobacteria. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=109.93 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVT 126 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii 126 (231)
....|||||||||.+-.++- ...++.++++|.++.|.+. .+++.+||+|+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-----~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-----WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCccccc-----CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 34578999999998774332 0235677788877665421 25789999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+.++|+.+ +++.+.|+++.++|+|||++++.++............ .......|....+|... +. +.-+.|+++
T Consensus 151 ~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~-q~v~ep~~~~~~dGC~l---tr-d~~e~Leda 223 (252)
T KOG4300|consen 151 CTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRIL-QQVAEPLWHLESDGCVL---TR-DTGELLEDA 223 (252)
T ss_pred EEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHH-HHHhchhhheeccceEE---eh-hHHHHhhhc
Confidence 99999999 9999999999999999999999998887665433321 22333334444555554 34 566777888
Q ss_pred CceEEEEEEE
Q 045799 207 GFSTVDINIH 216 (231)
Q Consensus 207 Gf~~~~~~~~ 216 (231)
.|++.+.+..
T Consensus 224 ~f~~~~~kr~ 233 (252)
T KOG4300|consen 224 EFSIDSCKRF 233 (252)
T ss_pred ccccchhhcc
Confidence 8988876543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-16 Score=122.77 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=110.7
Q ss_pred chhhhhhhcCCCCcccCCCCcchhHHHhhHHHhhHHHHHHhcc--CCcccchhhh----HHhhcccccCCCCCCCCCCCe
Q 045799 2 ITTVQRRHRHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHK--NKFFKDRHYL----EKDWGNYFSDDSCCPNGNPKV 75 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 75 (231)
+++.++|.+.+..+.....+...+..|+..+.+-|..+|..+. .....+..|- .+.+...+.. ....++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~---~~~~~~~~ 147 (315)
T PLN02585 71 LTDPERRRQLQAEEVGGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAE---DGSLAGVT 147 (315)
T ss_pred ccChHHHHhhhhhhhHHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHh---cCCCCCCE
Confidence 4455666655444443333334455666655555666665432 1111111111 1111112211 00135689
Q ss_pred EEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEEEeee
Q 045799 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 76 iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii~~~~ 130 (231)
|||||||+|.++..++.. +.+++++|+++.|+.. ...+++||+|++..+
T Consensus 148 VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 148 VCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred EEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 999999999999988843 3367788888765421 012478999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++|++++....+++.+.+ +.++|.+ +.. .+......... .+...+.........++++.+++.++|+++||++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~li-Is~-~p~~~~~~~l~----~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRLI-ISF-APKTLYYDILK----RIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEEE-EEe-CCcchHHHHHH----HHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 999976566677777775 4566554 432 22221111111 1111110001111234568999999999999999
Q ss_pred EEEEEEe
Q 045799 211 VDINIHL 217 (231)
Q Consensus 211 ~~~~~~~ 217 (231)
...+...
T Consensus 295 ~~~~~~~ 301 (315)
T PLN02585 295 ARREMTA 301 (315)
T ss_pred EEEEEee
Confidence 8766544
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=113.41 Aligned_cols=124 Identities=12% Similarity=0.176 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++. .++++++||+|++..+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 35678999999999998887632 235667777665432 145678999999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++ .++..++.++.++|+|||.+++..+........... ...+. .......+++.+++..++...|++.
T Consensus 115 ~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~--~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 115 WC--GNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA--WQAVD------ERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred hc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH--HHHhc------cCCccccCCCHHHHHHHHHhCCcee
Confidence 99 789999999999999999999998776655432111 01111 1112245789999999999888765
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=113.21 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..|+.. +.+++++|+++.+++. ++ +++||+|++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~ 101 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILS 101 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEE
Confidence 45689999999999999999843 3366777777654321 22 367999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..++||++++++..++++++++|+|||++++.+....+... . . ...++.++.+++.++++ |
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~--~-------~--------~~~~~~~~~~el~~~~~--~ 162 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--C-------T--------VGFPFAFKEGELRRYYE--G 162 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC--C-------C--------CCCCCccCHHHHHHHhC--C
Confidence 99999997778899999999999999997665432221110 0 0 00123478899999996 8
Q ss_pred ceEEEEEE
Q 045799 208 FSTVDINI 215 (231)
Q Consensus 208 f~~~~~~~ 215 (231)
|+++....
T Consensus 163 ~~~~~~~~ 170 (197)
T PRK11207 163 WEMVKYNE 170 (197)
T ss_pred CeEEEeeC
Confidence 99988754
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=118.68 Aligned_cols=138 Identities=18% Similarity=0.240 Sum_probs=84.6
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVT 126 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii 126 (231)
...++.+|||||||.|.++..++... +++++++.+|..+... .+ +.+||.|+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-~~~fD~Iv 132 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-PGKFDRIV 132 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S-SEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-CCCCCEEE
Confidence 46899999999999999999998331 3345555555443321 12 24999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccc-cccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN-QMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
+..+++|+.+++...+++++.++|+|||++++......+.......... .-+....+ ..+ ...+..++...+++
T Consensus 133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF--Pgg---~lps~~~~~~~~~~ 207 (273)
T PF02353_consen 133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF--PGG---YLPSLSEILRAAED 207 (273)
T ss_dssp EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS--TTS------BHHHHHHHHHH
T ss_pred EEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC--CCC---CCCCHHHHHHHHhc
Confidence 9999999988889999999999999999999876666544322111000 00111111 111 23578889999999
Q ss_pred cCceEEEEEEEe
Q 045799 206 AGFSTVDINIHL 217 (231)
Q Consensus 206 ~Gf~~~~~~~~~ 217 (231)
+||++..+...+
T Consensus 208 ~~l~v~~~~~~~ 219 (273)
T PF02353_consen 208 AGLEVEDVENLG 219 (273)
T ss_dssp TT-EEEEEEE-H
T ss_pred CCEEEEEEEEcC
Confidence 999999876543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-16 Score=120.12 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=98.8
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTL 127 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~ 127 (231)
...+|++|||||||.|.++..++... +++++++++|..+... +...+.||-|++
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvS 143 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVS 143 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc-----CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeee
Confidence 45899999999999999999998443 4577888888776532 123456999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-hhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..+++|+..+....+++.++++|+|||.+++.+...++.... ........+... + ...+..++.+...++
T Consensus 144 vgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPg------G---~lPs~~~i~~~~~~~ 214 (283)
T COG2230 144 VGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPG------G---ELPSISEILELASEA 214 (283)
T ss_pred hhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCC------C---cCCCHHHHHHHHHhc
Confidence 999999988889999999999999999999987766653321 000001111111 1 234678888989999
Q ss_pred CceEEEEEEE
Q 045799 207 GFSTVDINIH 216 (231)
Q Consensus 207 Gf~~~~~~~~ 216 (231)
||.+......
T Consensus 215 ~~~v~~~~~~ 224 (283)
T COG2230 215 GFVVLDVESL 224 (283)
T ss_pred CcEEehHhhh
Confidence 9999876543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-15 Score=118.46 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~~ 130 (231)
.++.+|||||||+|..+..++.... ..+++++|.++.++. .++++++||+|++..+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~----~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4578999999999998887764321 135566776655432 1456789999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++|+ .+...++++++++|+|||.+++.+...++...... ....+ ..+.+.+++.++|+++||+.
T Consensus 188 L~~~--~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~------~~~~~--------~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 188 IEYW--PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF------FADVW--------MLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred hhhC--CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH------hhhhh--------ccCCCHHHHHHHHHHCCCeE
Confidence 9999 67889999999999999999886543322111000 00001 12357899999999999999
Q ss_pred EEEEEEee
Q 045799 211 VDINIHLK 218 (231)
Q Consensus 211 ~~~~~~~~ 218 (231)
+++.....
T Consensus 252 V~i~~i~~ 259 (340)
T PLN02490 252 VKLKRIGP 259 (340)
T ss_pred EEEEEcCh
Confidence 98876443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=109.05 Aligned_cols=141 Identities=21% Similarity=0.312 Sum_probs=101.3
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc--ccccceeeeeecCCccccc--------------------------CCCCCCC
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE--FREERVNAFVCNVVNDDLS--------------------------RNVNPSS 121 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~--~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~ 121 (231)
..++.++||++||||..+..++.+.. +....-+++.+|+++.|+. .||++++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 46679999999999999988874322 1223346788888887763 2889999
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCch-hhhhhhc-----cccccccceE------EeCCCe
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDF-AQVKLLD-----RNQMIGDSFY------VRGDGT 189 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~-~~~~~~~-----~~~~~~~~~~------~~~~~~ 189 (231)
||...+.+.+..+ .++++.+++++|+|||||++.+.+++..+. ...++.. .-+.++.-.. ..-...
T Consensus 178 ~D~yTiafGIRN~--th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveS 255 (296)
T KOG1540|consen 178 FDAYTIAFGIRNV--THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVES 255 (296)
T ss_pred ceeEEEecceecC--CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhh
Confidence 9999999999999 889999999999999999999999888763 2111110 1111111100 000111
Q ss_pred EEEeeCHHHHHHHHHHcCceEEE
Q 045799 190 CSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 190 ~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
...+.+.+++..+.+++||....
T Consensus 256 I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 256 IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhcCCCHHHHHHHHHHcCCcccc
Confidence 23578889999999999999886
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-15 Score=126.71 Aligned_cols=129 Identities=21% Similarity=0.304 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|..+..++... +.+++++|+++.++. .++++++||+|++.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-----DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 567899999999999988887432 235677777644431 14566789999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|+ .++..++++++++|||||.+++.++........... ...+ ...+ ...++.+++.++++++||
T Consensus 340 ~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--~~~~------~~~g--~~~~~~~~~~~~l~~aGF 407 (475)
T PLN02336 340 DTILHI--QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF--AEYI------KQRG--YDLHDVQAYGQMLKDAGF 407 (475)
T ss_pred Cccccc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH--HHHH------HhcC--CCCCCHHHHHHHHHHCCC
Confidence 999999 789999999999999999999987654322110000 0000 0001 124688999999999999
Q ss_pred eEEEEEEE
Q 045799 209 STVDINIH 216 (231)
Q Consensus 209 ~~~~~~~~ 216 (231)
+++.++..
T Consensus 408 ~~i~~~d~ 415 (475)
T PLN02336 408 DDVIAEDR 415 (475)
T ss_pred eeeeeecc
Confidence 99977643
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-15 Score=113.82 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=108.7
Q ss_pred hhHHHhhHHHhhHHHHHHhcc--CCccc----chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcccc
Q 045799 24 LEEHYQSKAKKYWDGFYKRHK--NKFFK----DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFR 97 (231)
Q Consensus 24 ~~~~~~~~~~~~w~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~ 97 (231)
.+..|+.....-|+.++..+. ..+.. ....+...+.+.+.. ...++.+|||+|||+|.++..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~vLDiGcG~G~~~~~la~~---- 76 (219)
T TIGR02021 5 VRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPK----DPLKGKRVLDAGCGTGLLSIELAKR---- 76 (219)
T ss_pred HHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCEEEEEeCCCCHHHHHHHHC----
Confidence 355666666778999886533 11111 011122222222221 0246789999999999999988743
Q ss_pred ccceeeeeecCCcccccC-------------------C--CCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEE
Q 045799 98 EERVNAFVCNVVNDDLSR-------------------N--VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 98 ~~~~~~~~~D~~~~~~~~-------------------~--~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l 156 (231)
...++++|+++.++.. . ...++||+|++..+++|+++++...+++++.+.+++++++
T Consensus 77 --~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i 154 (219)
T TIGR02021 77 --GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIF 154 (219)
T ss_pred --CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 2356778877665421 0 0126899999999999997677889999999999877666
Q ss_pred EEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 157 LVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
.+....... ... . .+...+..........+++.+++.++++++||+++.......
T Consensus 155 ~~~~~~~~~-~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 155 TFAPKTAWL-AFL--K----MIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred EECCCchHH-HHH--H----HHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 543211111 000 0 011111111112224568999999999999999998865543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=112.31 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=106.0
Q ss_pred cchhHHHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccce
Q 045799 22 YPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERV 101 (231)
Q Consensus 22 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~ 101 (231)
+.+...|++-+..||+.+.......-.. . .....+.... ...++.+|||||||+|.++..++.. ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~------~~~~~~~vLdiG~G~G~~~~~l~~~------~~ 71 (233)
T PRK05134 6 PAEIAKFSALAARWWDPNGEFKPLHRIN-P-LRLNYIREHA------GGLFGKRVLDVGCGGGILSESMARL------GA 71 (233)
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHhh-H-HHHHHHHHhc------cCCCCCeEEEeCCCCCHHHHHHHHc------CC
Confidence 3556688888888997753111110000 0 0011111111 1256789999999999998877633 12
Q ss_pred eeeeecCCcccccC-----------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 102 NAFVCNVVNDDLSR-----------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 102 ~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
.++++|+++..+.. ...+++||+|++..+++|+ .++..+++.+.+.|+|||.+++
T Consensus 72 ~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 72 DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc--CCHHHHHHHHHHHcCCCcEEEE
Confidence 34555554333210 1134789999999999999 7889999999999999999998
Q ss_pred EeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 159 CDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
..+.............. .....+.......+..+++.++|.++++++||++++...
T Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 150 STLNRNLKSYLLAIVGA-EYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred EecCCChHHHHHHHhhH-HHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 76543221110000000 000000001112224578999999999999999998754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-15 Score=100.63 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=60.4
Q ss_pred EEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEeeeeeccCC
Q 045799 77 LEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIFMLSAVSP 136 (231)
Q Consensus 77 LdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~~l~~~~~ 136 (231)
||+|||+|..+..++.. ...+++++|++..++. .++++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--
Confidence 89999999999999855 2446677777766432 27789999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCeEEEE
Q 045799 137 KKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 137 ~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
+++..++++++|+|||||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999999976
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.3e-15 Score=109.76 Aligned_cols=120 Identities=19% Similarity=0.282 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++.. ++ +++||+|++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~ 101 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFST 101 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEe
Confidence 34579999999999999999843 3466777777654421 11 3579999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|+++++...++++++++|+|||++++.++...+... .. ......++++++.+++. +|
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~-----~~------------~~~~~~~~~~el~~~f~--~~ 162 (195)
T TIGR00477 102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP-----CH------------MPFSFTFKEDELRQYYA--DW 162 (195)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC-----CC------------CCcCccCCHHHHHHHhC--CC
Confidence 9999997677889999999999999997766443221100 00 00123578999999996 59
Q ss_pred eEEEEEEE
Q 045799 209 STVDINIH 216 (231)
Q Consensus 209 ~~~~~~~~ 216 (231)
+++.....
T Consensus 163 ~~~~~~e~ 170 (195)
T TIGR00477 163 ELLKYNEA 170 (195)
T ss_pred eEEEeecc
Confidence 99988743
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-15 Score=114.90 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|..+..++..... .+.+++++|+++.|+.. .++...+|+|++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence 56789999999999998887642211 24577888888776532 1123469999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh-hhh-hhcc------ccccccceEEe---CCCeEEEeeCHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA-QVK-LLDR------NQMIGDSFYVR---GDGTCSFYFSED 197 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~-~~~-~~~~------~~~~~~~~~~~---~~~~~~~~~~~~ 197 (231)
.++||+++++...+++++++.|+|||.+++.+....... ... +... .......-... .-.......+.+
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 999999766778999999999999999999874432211 000 0000 00000000000 000012236899
Q ss_pred HHHHHHHHcCceEEE
Q 045799 198 FLSTLFLEAGFSTVD 212 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~ 212 (231)
+..++|+++||+.++
T Consensus 213 ~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 213 THKARLHKAGFEHSE 227 (247)
T ss_pred HHHHHHHHcCchhHH
Confidence 999999999997643
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=113.46 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------CCCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------RNVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------~~~~~~~fD~ii~~~~l~~~~ 135 (231)
.++.+|||||||||.++..++... +.+++++|+++.|+. .++++++||+|++.++++|+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-----~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~- 123 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-----KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHAS- 123 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-----CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhcc-
Confidence 347899999999999998887432 236789999887754 26788999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCC
Q 045799 136 PKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~g 153 (231)
+++..++++++|+|||.
T Consensus 124 -~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred -CCHHHHHHHHHHHhcCc
Confidence 78999999999999994
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=112.06 Aligned_cols=125 Identities=19% Similarity=0.305 Sum_probs=88.0
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEEEee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii~~~ 129 (231)
++|||||||+|.++..++.... ..++.++|+++.++. .++ .++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHH
Confidence 3799999999999988874321 234455555543321 012 35899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+++|+ .+...++++++++|+|||.+++.++...... ... ......++.+..+|.++++++||+
T Consensus 76 ~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~------~~~~~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 76 VIHHI--KDKMDLFSNISRHLKDGGHLVLADFIANLLS---------AIE------HEETTSYLVTREEWAELLARNNLR 138 (224)
T ss_pred HHHhC--CCHHHHHHHHHHHcCCCCEEEEEEcccccCc---------ccc------ccccccccCCHHHHHHHHHHCCCe
Confidence 99999 7789999999999999999999876432110 000 000112357889999999999999
Q ss_pred EEEEEEEeeee
Q 045799 210 TVDINIHLKQI 220 (231)
Q Consensus 210 ~~~~~~~~~~~ 220 (231)
+++....+...
T Consensus 139 ~~~~~~~~~~~ 149 (224)
T smart00828 139 VVEGVDASLEI 149 (224)
T ss_pred EEEeEECcHhH
Confidence 99987765543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=107.16 Aligned_cols=124 Identities=19% Similarity=0.362 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.++||+|||.|+++.+|+.+ +..+..+|.+...++. .+ ++.||+|++.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~-~~~yD~I~st 101 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF-PEEYDFIVST 101 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEEEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc-cCCcCEEEEE
Confidence 45689999999999999999944 3444455544433211 22 3689999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|++++....+++.+...++|||++++..+...+... . . ....+.+.+.++...+. ||
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p-----~--~----------~~~~f~~~~~EL~~~y~--dW 162 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP-----C--P----------SPFPFLLKPGELREYYA--DW 162 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS---------S----------S--S--B-TTHHHHHTT--TS
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC-----C--C----------CCCCcccCHHHHHHHhC--CC
Confidence 9999999889999999999999999999886543322110 0 0 00123467788999985 79
Q ss_pred eEEEEEEEeeee
Q 045799 209 STVDINIHLKQI 220 (231)
Q Consensus 209 ~~~~~~~~~~~~ 220 (231)
++++.....-.+
T Consensus 163 ~il~y~E~~g~~ 174 (192)
T PF03848_consen 163 EILKYNEDVGEL 174 (192)
T ss_dssp EEEEEEEEEEEE
T ss_pred eEEEEEccccce
Confidence 999875544333
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-15 Score=115.56 Aligned_cols=140 Identities=17% Similarity=0.206 Sum_probs=91.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|..+..++.... ..+.+++++|+++.++.. .++...+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~--~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeee
Confidence 4678999999999999988874322 124567888887666521 1123468999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hh-hhcc------ccccccc-eEE--eCCCeEEEeeCHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VK-LLDR------NQMIGDS-FYV--RGDGTCSFYFSED 197 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~-~~~~------~~~~~~~-~~~--~~~~~~~~~~~~~ 197 (231)
+++||+++++...+++++++.|+|||.+++.+........ .. +... ....... ... ..-......++.+
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 9999997667889999999999999999999854432111 00 0000 0000000 000 0000012347999
Q ss_pred HHHHHHHHcCceEEE
Q 045799 198 FLSTLFLEAGFSTVD 212 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~ 212 (231)
++..+++++||..++
T Consensus 210 ~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 210 THKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHcCCchHH
Confidence 999999999998544
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-15 Score=100.08 Aligned_cols=74 Identities=27% Similarity=0.466 Sum_probs=52.2
Q ss_pred EEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEEEeeee
Q 045799 77 LEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 77 LdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii~~~~l 131 (231)
||||||+|.++..++... ...+++++|+++.++.. ....++||+|++.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~----~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL----PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 799999999999998543 35688899999998842 1112599999999999
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l 156 (231)
||+ +++..++++++++|+|||.+
T Consensus 77 ~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh--hhHHHHHHHHHHHcCCCCCC
Confidence 999 89999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=108.40 Aligned_cols=150 Identities=14% Similarity=0.151 Sum_probs=96.6
Q ss_pred hhHHHHHHhccCCcc-cchh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc
Q 045799 34 KYWDGFYKRHKNKFF-KDRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND 111 (231)
Q Consensus 34 ~~w~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~ 111 (231)
+||+..|......+. ..++ .+...+..+. ..++.+|||+|||.|+.+.+|+.+ +.+++++|+++.
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~-------~~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~ 67 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALG-------LPAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEI 67 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhC-------CCCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHH
Confidence 379988866543321 2222 2222222211 146689999999999999999843 334455554433
Q ss_pred cccC-----------------------------------CC-CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeE
Q 045799 112 DLSR-----------------------------------NV-NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGY 155 (231)
Q Consensus 112 ~~~~-----------------------------------~~-~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~ 155 (231)
.++. +. ..+.||.|+...+++|++++.....++.+.++|||||+
T Consensus 68 Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 68 AVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred HHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 2110 00 13579999999999999988889999999999999998
Q ss_pred EEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 156 ILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 156 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
+++..+....... +.....++.+++.++|. .+|++..+...
T Consensus 148 ~ll~~~~~~~~~~-------------------~gpp~~~~~~eL~~~f~-~~~~i~~~~~~ 188 (213)
T TIGR03840 148 QLLITLDYDQSEM-------------------AGPPFSVSPAEVEALYG-GHYEIELLESR 188 (213)
T ss_pred EEEEEEEcCCCCC-------------------CCcCCCCCHHHHHHHhc-CCceEEEEeec
Confidence 7776554422110 00123478999999996 35777766543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=111.70 Aligned_cols=177 Identities=14% Similarity=0.191 Sum_probs=103.0
Q ss_pred hHHHhhHHHhhHHHHHHhccCCccc-----chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcccccc
Q 045799 25 EEHYQSKAKKYWDGFYKRHKNKFFK-----DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREE 99 (231)
Q Consensus 25 ~~~~~~~~~~~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~ 99 (231)
...|+..+.+.|+.+|....-.... ........+...+.. ....++.+|||||||+|.++..++..
T Consensus 14 ~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~vLDvGcG~G~~~~~l~~~------ 84 (230)
T PRK07580 14 RTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPA---DGDLTGLRILDAGCGVGSLSIPLARR------ 84 (230)
T ss_pred hHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHh---cCCCCCCEEEEEeCCCCHHHHHHHHc------
Confidence 5677777778899887653211110 000111111111111 01256789999999999999888743
Q ss_pred ceeeeeecCCcccccC---------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 100 RVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
...+.++|+++.++.. +..+++||+|++..+++|++.++...+++.+.+.+++++++.+
T Consensus 85 ~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 85 GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 2246677766544311 1234789999999999999777788899999987754444332
Q ss_pred EeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 159 CDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
..... .... .. .+...+..........+++..++.++++++||++.++....
T Consensus 165 ~~~~~-~~~~--~~----~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 165 APYTP-LLAL--LH----WIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred CCccH-HHHH--HH----HhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 21111 0000 00 01111100111122345789999999999999999987654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=108.41 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=94.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------------------cCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------SRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------~~~~~~~~fD~i 125 (231)
...+++|||||||.|..+..++.... -.++++|.+..-. ..+. .+.||+|
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA-----~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGA-----KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCC-----CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEE
Confidence 35789999999999999988873311 1244555432211 0122 5799999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
++..||.|. .++...|.++++.|++||.+++.+..........+. ....|... ....+..+...+..+|+.
T Consensus 187 F~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~------P~~rYa~m-~nv~FiPs~~~L~~wl~r 257 (315)
T PF08003_consen 187 FSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV------PEDRYAKM-RNVWFIPSVAALKNWLER 257 (315)
T ss_pred EEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc------cCCcccCC-CceEEeCCHHHHHHHHHH
Confidence 999999999 899999999999999999999987666544332222 11112111 112334699999999999
Q ss_pred cCceEEEEEEEeeee
Q 045799 206 AGFSTVDINIHLKQI 220 (231)
Q Consensus 206 ~Gf~~~~~~~~~~~~ 220 (231)
+||+.+++-......
T Consensus 258 ~gF~~v~~v~~~~Tt 272 (315)
T PF08003_consen 258 AGFKDVRCVDVSPTT 272 (315)
T ss_pred cCCceEEEecCccCC
Confidence 999988876654433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-14 Score=110.89 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=89.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
..++.+|||+|||+|..+..++.... ...+++++|+++.++. .++++++||+|+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g---~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG---PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEE
Confidence 36789999999999987765542211 1124556666544332 145577999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++|. .+...+++++.++|||||.+++.++.............. .+ + .+.....++..++.++|+++
T Consensus 152 ~~~v~~~~--~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~-~~----~---~~~~~~~~~~~e~~~~l~~a 221 (272)
T PRK11873 152 SNCVINLS--PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDA-EL----Y---AGCVAGALQEEEYLAMLAEA 221 (272)
T ss_pred EcCcccCC--CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhH-HH----H---hccccCCCCHHHHHHHHHHC
Confidence 99999998 678899999999999999999987654321110000000 00 0 00112246788999999999
Q ss_pred CceEEEEEEEe
Q 045799 207 GFSTVDINIHL 217 (231)
Q Consensus 207 Gf~~~~~~~~~ 217 (231)
||..+++....
T Consensus 222 Gf~~v~i~~~~ 232 (272)
T PRK11873 222 GFVDITIQPKR 232 (272)
T ss_pred CCCceEEEecc
Confidence 99998875543
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=107.39 Aligned_cols=142 Identities=20% Similarity=0.286 Sum_probs=91.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.... ...+++++|++..++. .+++.++||+|+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG---KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 4568999999999999988874321 1234555555432210 123457899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc----------cccccccce--EEeCCCeEEEee
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD----------RNQMIGDSF--YVRGDGTCSFYF 194 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~ 194 (231)
+..+++++ .+...+++++.++|+|||.+++.+...+......... ......... +.........++
T Consensus 127 ~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (239)
T PRK00216 127 IAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFP 204 (239)
T ss_pred EecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCC
Confidence 99999999 7899999999999999999998876554332100000 000000000 000000012356
Q ss_pred CHHHHHHHHHHcCceEEEEEEEe
Q 045799 195 SEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 195 ~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
+..++.++|+++||+++++....
T Consensus 205 ~~~~~~~~l~~aGf~~~~~~~~~ 227 (239)
T PRK00216 205 DQEELAAMLEEAGFERVRYRNLT 227 (239)
T ss_pred CHHHHHHHHHhCCCceeeeeeee
Confidence 88999999999999999887754
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-14 Score=112.40 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEeeee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~~l 131 (231)
+.+|||+|||+|.++..++.. +.+++++|+++.++.. ...+++||+|++..++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl 194 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVL 194 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchh
Confidence 459999999999999998743 3466777776654321 1125789999999999
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 211 (231)
+|+++++...+++++.+.|+|||++++......+... . .......++..++.++++ +|+++
T Consensus 195 ~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~------~-----------~~p~~~~~~~~el~~~~~--~~~i~ 255 (287)
T PRK12335 195 MFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP------C-----------PMPFSFTFKEGELKDYYQ--DWEIV 255 (287)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC------C-----------CCCCCcccCHHHHHHHhC--CCEEE
Confidence 9997778899999999999999997765322211110 0 001124588999999996 49999
Q ss_pred EEEE
Q 045799 212 DINI 215 (231)
Q Consensus 212 ~~~~ 215 (231)
....
T Consensus 256 ~~~e 259 (287)
T PRK12335 256 KYNE 259 (287)
T ss_pred EEec
Confidence 8754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-14 Score=106.06 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=99.9
Q ss_pred HhhHHHHHHhccCCcc-cchh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc
Q 045799 33 KKYWDGFYKRHKNKFF-KDRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN 110 (231)
Q Consensus 33 ~~~w~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~ 110 (231)
.++|+..|......+. ...+ .+.+.+..+. ..++.+|||+|||.|..+.+|+.+ +.+++++|+++
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~-------~~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~ 69 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALA-------LPAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSE 69 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhC-------CCCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCH
Confidence 3689998876553331 2222 3333322211 245689999999999999999854 44666666664
Q ss_pred ccccC-----------------------------------CC-CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe
Q 045799 111 DDLSR-----------------------------------NV-NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 111 ~~~~~-----------------------------------~~-~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
..+.. .. ....||+|+...+++|++++.....++.+.++|+|||
T Consensus 70 ~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 70 LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 42210 00 1257999999999999998889999999999999999
Q ss_pred EEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 155 YILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 155 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
.+++..+...... . +..+..++.+++.+++. -+|++..+.....
T Consensus 150 ~~~l~~~~~~~~~----------~---------~gPp~~~~~~el~~~~~-~~~~i~~~~~~~~ 193 (218)
T PRK13255 150 RGLLVTLDYPQEE----------L---------AGPPFSVSDEEVEALYA-GCFEIELLERQDV 193 (218)
T ss_pred eEEEEEEEeCCcc----------C---------CCCCCCCCHHHHHHHhc-CCceEEEeeeccc
Confidence 7655433322111 0 00123479999999995 3488887765443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=107.26 Aligned_cols=126 Identities=22% Similarity=0.382 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-------------------cCCCCCCCeeEEEEeeeee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-------------------SRNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-------------------~~~~~~~~fD~ii~~~~l~ 132 (231)
.+.+|||+|||+|.++..++.... ..+++++|++..++ ..++++++||+|++..+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP----QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC----CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 347899999999999988874321 22344555443322 1144678999999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
|+ .++..++.++.++|+|||.+++.++........... ... ....+++..++.+++.++ |..+.
T Consensus 110 ~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 110 WC--DDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS-----FGQ--------HGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred hc--cCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH-----HHH--------hccCCCCHHHHHHHHHHh-cCCcE
Confidence 99 789999999999999999999987666554321111 000 012356778888888877 77666
Q ss_pred EEEEe
Q 045799 213 INIHL 217 (231)
Q Consensus 213 ~~~~~ 217 (231)
+....
T Consensus 174 ~~~~~ 178 (240)
T TIGR02072 174 LEEEL 178 (240)
T ss_pred EEEEE
Confidence 55443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=105.67 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCC-CCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNV-NPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~-~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++... ..++++|+++.++. .+. ..++||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG------ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEE
Confidence 347899999999999988776321 13455555432210 011 136899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+.++++|+ .++..+++.+.+.|+|||.+++.+............ ........+..........+++..++.++++++
T Consensus 118 ~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 118 CMEVLEHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAI-VGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred ehhHHHhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHH-HhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99999999 789999999999999999999876543211110000 000000000001111223467899999999999
Q ss_pred CceEEEEEEEe
Q 045799 207 GFSTVDINIHL 217 (231)
Q Consensus 207 Gf~~~~~~~~~ 217 (231)
||+++++....
T Consensus 195 G~~i~~~~~~~ 205 (224)
T TIGR01983 195 GLRVKDVKGLV 205 (224)
T ss_pred CCeeeeeeeEE
Confidence 99999887544
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=107.08 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=87.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~ 133 (231)
.++.+|||||||+|.++..++.... ..+++++|+++.++.. ..++++||+|++..+++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP----AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhh
Confidence 5678999999999999988874321 2356777777654421 123468999999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhh--ccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLL--DRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 134 ~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+ .+...+++++.++|+|||.+++.......... .... .....+...+.... .....+.+...+.+++.++|+.+
T Consensus 106 ~--~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 106 L--PDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRG-ARRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred C--CCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhcccc-ccCcCCCCHHHHHHHHHhCCCce
Confidence 9 67899999999999999999886322211110 0000 00000111110001 01123467788999999999876
Q ss_pred EEEEE
Q 045799 211 VDINI 215 (231)
Q Consensus 211 ~~~~~ 215 (231)
.....
T Consensus 183 ~~~~~ 187 (258)
T PRK01683 183 DIWHT 187 (258)
T ss_pred eeeee
Confidence 44333
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=105.64 Aligned_cols=144 Identities=24% Similarity=0.345 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|..+..++.... ...+++++|+++..+ ..+++.++||+|++..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~---~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAP---DRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcC---CCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 4678999999999999988874321 012455555543221 1124457899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh------hhccccccccceEEeCC-------CeEEEeeCH
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK------LLDRNQMIGDSFYVRGD-------GTCSFYFSE 196 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 196 (231)
+++++ .++..+++++.+.|+|||.+++.+...+...... .......... .+.... .....+++.
T Consensus 115 ~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 191 (223)
T TIGR01934 115 GLRNV--TDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGG-LISKNAEAYTYLPESIRAFPSQ 191 (223)
T ss_pred eeCCc--ccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhh-hhcCCchhhHHHHHHHHhCCCH
Confidence 99999 7899999999999999999999876544321000 0000000000 000000 001235788
Q ss_pred HHHHHHHHHcCceEEEEEEEeeee
Q 045799 197 DFLSTLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~~~~~~~~~ 220 (231)
.+|..+|+++||+++.+......+
T Consensus 192 ~~~~~~l~~aGf~~~~~~~~~~~~ 215 (223)
T TIGR01934 192 EELAAMLKEAGFEEVRYRSLTFGV 215 (223)
T ss_pred HHHHHHHHHcCCccceeeeeecce
Confidence 999999999999999888776654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.1e-14 Score=104.45 Aligned_cols=144 Identities=18% Similarity=0.202 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------C-CCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------R-NVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------~-~~~~~~fD~ii~~~~l~ 132 (231)
+++.+|||+|||+|.++..++... ...++++|+++.++. . ++++++||+|++..+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-----QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-----CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 456799999999999998876321 112344444432210 1 24567999999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-hhhccccc-cccce-EEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-KLLDRNQM-IGDSF-YVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
|+ .++..+++++.+.+++ .++..+........ .+...... ..... +...+..+..+++.+++.++++++||+
T Consensus 87 ~~--~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~ 161 (194)
T TIGR02081 87 AT--RNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLR 161 (194)
T ss_pred cC--cCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCE
Confidence 99 7899999998887654 33332221111100 00000000 00000 000111223578999999999999999
Q ss_pred EEEEEEEeeeeeccc
Q 045799 210 TVDINIHLKQIKNRS 224 (231)
Q Consensus 210 ~~~~~~~~~~~~~~~ 224 (231)
+++.......-.+++
T Consensus 162 v~~~~~~~~~~~~~~ 176 (194)
T TIGR02081 162 ILDRAAFDVDGRGGR 176 (194)
T ss_pred EEEEEEecccccccc
Confidence 999888766666554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-13 Score=95.06 Aligned_cols=118 Identities=20% Similarity=0.310 Sum_probs=85.5
Q ss_pred CeEEEEcCCCCcchHHHhcCc------------------------cccccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHS------------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~------------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
.+|||+|||+|.+...|+... ..-...+.+.+.|+..+ .+..++||+|....
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP----DFLSGQFDLVLDKG 144 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC----cccccceeEEeecC
Confidence 399999999999999998221 00012256667777654 34568999999988
Q ss_pred eeeccC--CC----CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHH
Q 045799 130 MLSAVS--PK----KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLF 203 (231)
Q Consensus 130 ~l~~~~--~~----~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 203 (231)
++..++ ++ .+...+..+.++|+|||+++|. +|.+|..++.+.+
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt-------------------------------SCN~T~dELv~~f 193 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT-------------------------------SCNFTKDELVEEF 193 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE-------------------------------ecCccHHHHHHHH
Confidence 887763 12 2345678899999999999986 3557899999999
Q ss_pred HHcCceEEEEEEEeeeeeccccc
Q 045799 204 LEAGFSTVDINIHLKQIKNRSQD 226 (231)
Q Consensus 204 ~~~Gf~~~~~~~~~~~~~~~~~~ 226 (231)
+..||++......+-..-+.+.+
T Consensus 194 ~~~~f~~~~tvp~ptF~FgG~~G 216 (227)
T KOG1271|consen 194 ENFNFEYLSTVPTPTFMFGGSVG 216 (227)
T ss_pred hcCCeEEEEeeccceEEeccccc
Confidence 99999888776666554444433
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=106.85 Aligned_cols=141 Identities=21% Similarity=0.173 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc----------------------cCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL----------------------SRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~----------------------~~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.++ ..++++++||+|++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~---~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVG---PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEe
Confidence 6678999999999999988874321 122455666554321 113456799999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-cccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
.+++|+ .++..+++++.++|+|||.+++.+............. ....+...+... ....+....+.++|+++|
T Consensus 95 ~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~aG 168 (241)
T PRK08317 95 RVLQHL--EDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDH----FADPWLGRRLPGLFREAG 168 (241)
T ss_pred chhhcc--CCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHcC
Confidence 999999 7899999999999999999998764321110000000 000000000000 011245578999999999
Q ss_pred ceEEEEEEEeeee
Q 045799 208 FSTVDINIHLKQI 220 (231)
Q Consensus 208 f~~~~~~~~~~~~ 220 (231)
|+.+.+.......
T Consensus 169 f~~~~~~~~~~~~ 181 (241)
T PRK08317 169 LTDIEVEPYTLIE 181 (241)
T ss_pred CCceeEEEEEEec
Confidence 9988877765443
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=99.27 Aligned_cols=126 Identities=18% Similarity=0.265 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-------------------cccc---cceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-------------------EFRE---ERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-------------------~~~~---~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
....+.||+|+|-|+.+..++... .... ...+++++-+. .+ ..+..+||+|++-
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ--~f--~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQ--DF--TPEEGKYDLIWIQ 129 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GG--G------TT-EEEEEEE
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHh--hc--cCCCCcEeEEEeh
Confidence 456889999999999999887221 0000 11122222221 11 1124699999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
+++.|++++++..+|++++..|+|+|++++-+...... ...+...++...+ +.+.++++|++||+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~-------------~~~~D~~DsSvTR--s~~~~~~lF~~AGl 194 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG-------------FDEFDEEDSSVTR--SDEHFRELFKQAGL 194 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS-------------EEEEETTTTEEEE--EHHHHHHHHHHCT-
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC-------------CcccCCccCeeec--CHHHHHHHHHHcCC
Confidence 99999999999999999999999999999976333211 1123345554444 78899999999999
Q ss_pred eEEEEEE
Q 045799 209 STVDINI 215 (231)
Q Consensus 209 ~~~~~~~ 215 (231)
+++..+.
T Consensus 195 ~~v~~~~ 201 (218)
T PF05891_consen 195 RLVKEEK 201 (218)
T ss_dssp EEEEEEE
T ss_pred EEEEecc
Confidence 9998654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=116.48 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++... .+++++|+++.++ ..++++++||+|++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~ 109 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA------GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFS 109 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEeh
Confidence 356799999999999999988331 1234444433322 12456789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+++|+++++...++++++++|||||++++.+......... ... .+ ...+.....|.+++.++|
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~-----~~~--------~~--~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS-----KRK--------NN--PTHYREPRFYTKVFKECH 174 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc-----ccc--------CC--CCeecChHHHHHHHHHhe
Confidence 999999976668899999999999999999987543221100 000 01 122356789999999999
Q ss_pred ceEEEEEEEeeee
Q 045799 208 FSTVDINIHLKQI 220 (231)
Q Consensus 208 f~~~~~~~~~~~~ 220 (231)
|............
T Consensus 175 ~~~~~~~~~~~~~ 187 (475)
T PLN02336 175 TRDEDGNSFELSL 187 (475)
T ss_pred eccCCCCEEEEEE
Confidence 8877655444333
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=110.92 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=91.1
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CC--CCCCeeEEEEeeeee
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NV--NPSSVDVVTLIFMLS 132 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~--~~~~fD~ii~~~~l~ 132 (231)
..++.+|||||||+|.++..++... +++++++|+++.++.. .. .+++||+|++..+++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-----g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~e 239 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-----GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchh
Confidence 4678899999999999998887432 3467788887666531 01 146899999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
|++..+...+++++.++|||||.+++.++........ ...+... +.... ..+.+..++...++ .||++.+
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~-----~~~~i~~-yifp~---g~lps~~~i~~~~~-~~~~v~d 309 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTN-----VDPWINK-YIFPN---GCLPSVRQIAQASE-GLFVMED 309 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCC-----CCCCcee-eecCC---CcCCCHHHHHHHHH-CCcEEEE
Confidence 9977778899999999999999999987655432110 0001001 11111 12357778777765 6899888
Q ss_pred EEEEe
Q 045799 213 INIHL 217 (231)
Q Consensus 213 ~~~~~ 217 (231)
+...+
T Consensus 310 ~~~~~ 314 (383)
T PRK11705 310 WHNFG 314 (383)
T ss_pred EecCh
Confidence 76543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.5e-13 Score=97.24 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc---------------cccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF---------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~---------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~ 135 (231)
.++.+|||+|||.|.+..+|...... -..++.++..|+..... .|++++||.||++.+|.++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~--~f~d~sFD~VIlsqtLQ~~- 88 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLA--DFPDQSFDYVILSQTLQAV- 88 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHh--hCCCCCccEEehHhHHHhH-
Confidence 78899999999999999888743211 12344455555544322 5789999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-hh-----hccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 136 PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-KL-----LDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
..+..+|+++.|+ |...+++-++....... .. .+....+...||...+ -++.|..+..+++.+.|++
T Consensus 89 -~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN---ih~~Ti~DFe~lc~~~~i~ 161 (193)
T PF07021_consen 89 -RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN---IHLCTIKDFEDLCRELGIR 161 (193)
T ss_pred -hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC---cccccHHHHHHHHHHCCCE
Confidence 8899998888765 55566653333221110 00 1112234444543221 2468999999999999999
Q ss_pred EEEEEEEee
Q 045799 210 TVDINIHLK 218 (231)
Q Consensus 210 ~~~~~~~~~ 218 (231)
|++-.....
T Consensus 162 I~~~~~~~~ 170 (193)
T PF07021_consen 162 IEERVFLDG 170 (193)
T ss_pred EEEEEEEcC
Confidence 998665443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-13 Score=102.28 Aligned_cols=87 Identities=16% Similarity=0.260 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~ 133 (231)
.++.+|||||||+|..+..++.... ..+++++|+++.++.. ++++++||+|++.++++|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~----~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhh
Confidence 5677899999999999988874321 2356777777655421 456789999999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 134 ~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+++++...+++++.+++ ++++++.++..
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 98778899999999987 46888877544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-13 Score=97.70 Aligned_cols=85 Identities=20% Similarity=0.395 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhc-CccccccceeeeeecCCcccccC-----------------------C--CCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS-HSEFREERVNAFVCNVVNDDLSR-----------------------N--VNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~-~~~~~~~~~~~~~~D~~~~~~~~-----------------------~--~~~~~fD~ 124 (231)
.++.+|||+|||+|.++..++. ... +.+++++|+++.++.. + ++ ++||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~----~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNP----GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTT----TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCC----CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeE
Confidence 4678999999999999999883 111 3346666666655421 1 22 79999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|++..+++|+ .++..+++++.+.|+++|.+++.++.
T Consensus 77 I~~~~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999 78999999999999999999998776
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-13 Score=92.33 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVTL 127 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii~ 127 (231)
|+.+|||||||+|.++..++... .+.+++++|+++.++.. .-..++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF----PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH----TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEE
Confidence 57899999999999999998411 13345566665544321 112357999999
Q ss_pred ee-eeeccC-CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IF-MLSAVS-PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.. +++++. .++...+++++.+.|+|||++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99 555442 2567899999999999999999864
|
... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=96.71 Aligned_cols=126 Identities=17% Similarity=0.305 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.+..++||+|||||.+...+..... ...++|+|..|+.. ....+.||+|++..|
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~------~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD------RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh------hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 4468999999999999988864322 45789999888753 135689999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+.++ -++..++.-+...|+|||.+.++.-..++.. .+...... .+-++...++.+++..||++
T Consensus 198 l~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-------------~f~l~ps~--RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 198 LPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDG-------------GFVLGPSQ--RYAHSESYVRALLAASGLEV 260 (287)
T ss_pred HHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCC-------------Ceecchhh--hhccchHHHHHHHHhcCceE
Confidence 9999 8899999999999999999999743332221 01111100 12357788999999999999
Q ss_pred EEEEEEeee
Q 045799 211 VDINIHLKQ 219 (231)
Q Consensus 211 ~~~~~~~~~ 219 (231)
++++..+..
T Consensus 261 i~~~~ttiR 269 (287)
T COG4976 261 IAIEDTTIR 269 (287)
T ss_pred EEeecccch
Confidence 998765543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=104.67 Aligned_cols=133 Identities=14% Similarity=0.245 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc-----------------------cccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF-----------------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~-----------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
.+..+|||||||+|.++..++....- ...+++++..|.... +++ .+|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----~~~--~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP--EADAVLF 221 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCC----CCC--CCCEEEe
Confidence 56689999999999999988833210 001233333333221 222 4799999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccc-cccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQM-IGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..++|+++++....+++++++.|+|||.+++.|+...+.....+...... ....+ ......+.+.+++.++|+++
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGM----PFSVLGFKEQARYKEILESL 297 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHccc----ccccccCCCHHHHHHHHHHc
Confidence 99999987666678999999999999999999865433221100000000 00000 00011234579999999999
Q ss_pred CceEEEE
Q 045799 207 GFSTVDI 213 (231)
Q Consensus 207 Gf~~~~~ 213 (231)
||+.+++
T Consensus 298 Gf~~v~~ 304 (306)
T TIGR02716 298 GYKDVTM 304 (306)
T ss_pred CCCeeEe
Confidence 9987764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=102.34 Aligned_cols=127 Identities=14% Similarity=0.217 Sum_probs=80.7
Q ss_pred hHHHhhHHHhhHHHHHHhccCCccc-chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceee
Q 045799 25 EEHYQSKAKKYWDGFYKRHKNKFFK-DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNA 103 (231)
Q Consensus 25 ~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~ 103 (231)
+-.|+....+.|+.++....--... +...+......+.... +++.+|||+|||+|..+..|+.... ...++
T Consensus 20 ~~~yd~~G~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~-----~~~~~iLELGcGtG~~t~~Ll~~l~---~~~~~ 91 (301)
T TIGR03438 20 KYFYDARGSELFEQICELPEYYPTRTEAAILERHADEIAAAT-----GAGCELVELGSGSSRKTRLLLDALR---QPARY 91 (301)
T ss_pred hhcccchHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhh-----CCCCeEEecCCCcchhHHHHHHhhc---cCCeE
Confidence 5567777888888886522211111 1123333334444332 5668999999999999998874321 02456
Q ss_pred eeecCCcccccC-------------------------CCCCC----CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe
Q 045799 104 FVCNVVNDDLSR-------------------------NVNPS----SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 104 ~~~D~~~~~~~~-------------------------~~~~~----~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
+++|++..|+.. +++.. ...++++..+++++++++...+++++++.|+|||
T Consensus 92 ~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 92 VPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred EEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCC
Confidence 677777665311 11111 2334555567899988888999999999999999
Q ss_pred EEEEE
Q 045799 155 YILVC 159 (231)
Q Consensus 155 ~l~i~ 159 (231)
.+++.
T Consensus 172 ~~lig 176 (301)
T TIGR03438 172 GLLIG 176 (301)
T ss_pred EEEEe
Confidence 99874
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=9e-13 Score=97.48 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=95.6
Q ss_pred chhhhHHhhcccccCCCCCCCCCCC-eEEEEcCCCCcchHHHhcCc-------------------------cccccceee
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPK-VVLEVGCGAGNTIFPLVSHS-------------------------EFREERVNA 103 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~-~iLdvGcG~G~~~~~l~~~~-------------------------~~~~~~~~~ 103 (231)
+...+.+.+.+++ .+.. +|||||||||..+.+++... ..+ .-..-
T Consensus 10 Nk~pIl~vL~~~l--------~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv~~P 80 (204)
T PF06080_consen 10 NKDPILEVLKQYL--------PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-NVRPP 80 (204)
T ss_pred CHhHHHHHHHHHh--------CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-ccCCC
Confidence 3445556665555 3334 69999999999999998210 000 01123
Q ss_pred eeecCCcccccC----CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc-cccc
Q 045799 104 FVCNVVNDDLSR----NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR-NQMI 178 (231)
Q Consensus 104 ~~~D~~~~~~~~----~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~-~~~~ 178 (231)
+.+|++...... ++..++||+|++.+++|.+|.+..+.+++.+.++|++||.|++.-+...+-. ++.. ...+
T Consensus 81 ~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~---~ts~SN~~F 157 (204)
T PF06080_consen 81 LALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGK---FTSESNAAF 157 (204)
T ss_pred eEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCE---eCCcHHHHH
Confidence 456776553322 1245799999999999999988999999999999999999998632222111 0000 0001
Q ss_pred ccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 179 GDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
+.....+ +. .+-.-+.+++.++..++|++.++...
T Consensus 158 D~sLr~r-dp-~~GiRD~e~v~~lA~~~GL~l~~~~~ 192 (204)
T PF06080_consen 158 DASLRSR-DP-EWGIRDIEDVEALAAAHGLELEEDID 192 (204)
T ss_pred HHHHhcC-CC-CcCccCHHHHHHHHHHCCCccCcccc
Confidence 1111111 11 12346889999999999998876543
|
The function of this family is unknown. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-12 Score=95.59 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc------------------cc-ccceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE------------------FR-EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~------------------~~-~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
..-.++||+|||.|.++..|+.... .. ..++.+...|+.. ..+.++||+|+++.++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-----~~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPE-----FWPEGRFDLIVLSEVL 116 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT--------SS-EEEEEEES-G
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-----CCCCCCeeEEEEehHh
Confidence 4447899999999999999982210 00 1244455555532 3467899999999999
Q ss_pred eccCC-CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 132 SAVSP-KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 132 ~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+|+.+ +++..++..+...|+|||.+++..+....- ..++ +-+-.+.+.++|.+. |..
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c---------~~wg------------h~~ga~tv~~~~~~~-~~~ 174 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANC---------RRWG------------HAAGAETVLEMLQEH-LTE 174 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH---------HHTT-------------S--HHHHHHHHHHH-SEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcc---------cccC------------cccchHHHHHHHHHH-hhh
Confidence 99964 568889999999999999999986532111 1111 124678899999876 555
Q ss_pred EEEE
Q 045799 211 VDIN 214 (231)
Q Consensus 211 ~~~~ 214 (231)
++-.
T Consensus 175 ~~~~ 178 (201)
T PF05401_consen 175 VERV 178 (201)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 4443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-13 Score=112.38 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CC--CCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RN--VNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~--~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++... .+.+++++|+++.++. .+ +++++||+|+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~----P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET----EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 357899999999999888776432 1345667777655431 12 5678999999
Q ss_pred EeeeeeccC-----------CCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 127 LIFMLSAVS-----------PKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 127 ~~~~l~~~~-----------~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
++.++|++. .+++..++++++++|||||.+++.+..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999888652 246789999999999999999998753
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-13 Score=92.48 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=57.8
Q ss_pred EEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEee-eee
Q 045799 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLIF-MLS 132 (231)
Q Consensus 76 iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~~-~l~ 132 (231)
|||+|||+|..+..++.... .....+++++|+++.++.. ++.+++||+|++.+ +++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~-~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFD-AGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhh-hcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999999984321 1113577888888877642 23567999999954 599
Q ss_pred ccCCCCHHHHHHHHHHhcCCCe
Q 045799 133 AVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
|+++++...+++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 9988889999999999999998
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=95.15 Aligned_cols=150 Identities=18% Similarity=0.288 Sum_probs=94.7
Q ss_pred HhhHHHHHHhccCCccc-chh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc
Q 045799 33 KKYWDGFYKRHKNKFFK-DRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN 110 (231)
Q Consensus 33 ~~~w~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~ 110 (231)
.++|+..|......+.. ..+ .+.+.+.. + ...++.+||..|||.|....+|+.+ +.+++++|+++
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~-l------~~~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~ 69 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDS-L------ALKPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSP 69 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHH-H------TTSTSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-H
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHh-c------CCCCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCH
Confidence 47899888776644332 111 22333332 1 2366789999999999999999844 33445555544
Q ss_pred ccccC-----------------------------------CC-CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCe
Q 045799 111 DDLSR-----------------------------------NV-NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDG 154 (231)
Q Consensus 111 ~~~~~-----------------------------------~~-~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG 154 (231)
..+.. +. ..++||+|+....|+.+|++.+.+..+.+.++|+|||
T Consensus 70 ~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 70 TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGG 149 (218)
T ss_dssp HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEE
T ss_pred HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCC
Confidence 33211 00 1147999999999999999999999999999999999
Q ss_pred EEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 155 YILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 155 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+++......... .-+ .++..+.+++.+++. .+|+++.+..
T Consensus 150 ~~lLi~l~~~~~~---------~~G----------PPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 150 RGLLITLEYPQGE---------MEG----------PPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEEEEES-CSC---------SSS----------SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred cEEEEEEEcCCcC---------CCC----------cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 9544432211100 001 122368899999998 7899999887
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=89.88 Aligned_cols=79 Identities=24% Similarity=0.323 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
+++.+|||+|||+|..+..++.... ..+++++|.++.++.. +. +++||+|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~----~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP----ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEE
Confidence 4478999999999999988873211 3456677776554321 22 568999998
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.. + .++..+++.+++.|+|||++++..
T Consensus 119 ~~----~--~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 119 RA----V--ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred cc----c--cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 64 3 467889999999999999999863
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=93.15 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=98.4
Q ss_pred HHhhHHHHHHhccCCc-ccchh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcc--------------
Q 045799 32 AKKYWDGFYKRHKNKF-FKDRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSE-------------- 95 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~-------------- 95 (231)
..+||+..+......+ ....+ .+.+.+..+. ..++.+||..|||.|..+.+|+.+..
T Consensus 8 ~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~-------~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~ 80 (226)
T PRK13256 8 NNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLN-------INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLS 80 (226)
T ss_pred CHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcC-------CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHH
Confidence 3579999887766554 22222 3334443322 24568999999999999999994310
Q ss_pred -------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEE
Q 045799 96 -------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 96 -------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l 156 (231)
+....+++.+.|+-..... .-..++||+|+...+|+++|++.+.+..+.+.++|+|||.+
T Consensus 81 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 81 FFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred HHHHcCCCcceecccccceeccCceEEEEccCcCCCcc-ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 1112333444444321100 00125899999999999999989999999999999999999
Q ss_pred EEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 157 LVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
++..+..... .+..++..+.+++.+++.. +|++..+..
T Consensus 160 lll~~~~~~~--------------------~~GPPf~v~~~e~~~lf~~-~~~i~~l~~ 197 (226)
T PRK13256 160 LLLVMEHDKK--------------------SQTPPYSVTQAELIKNFSA-KIKFELIDS 197 (226)
T ss_pred EEEEEecCCC--------------------CCCCCCcCCHHHHHHhccC-CceEEEeee
Confidence 8875422110 0111223578899999964 466665543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=87.63 Aligned_cols=110 Identities=16% Similarity=0.301 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC-----ccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHH
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH-----SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQN 145 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~ 145 (231)
++...|-|+|||.+.++..+... ......+-.++.+|++ ..|+++++.|++|+...|-- .+...++.+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia----~vPL~~~svDv~VfcLSLMG---Tn~~~fi~E 143 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIA----NVPLEDESVDVAVFCLSLMG---TNWPDFIRE 143 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TT----S-S--TT-EEEEEEES---S---S-HHHHHHH
T ss_pred CCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCc----cCcCCCCceeEEEEEhhhhC---CCcHHHHHH
Confidence 55679999999999999766422 1111233356778875 33678999999998665532 688999999
Q ss_pred HHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 146 IKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 146 ~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
+.|+||+||.+.|.+... ++-+.+...+.++..||++...+.
T Consensus 144 A~RvLK~~G~L~IAEV~S----------------------------Rf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 144 ANRVLKPGGILKIAEVKS----------------------------RFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHEEEEEEEEEEEEGG----------------------------G-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred HHheeccCcEEEEEEecc----------------------------cCcCHHHHHHHHHHCCCeEEeccc
Confidence 999999999999986332 123567888999999999988653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.2e-12 Score=98.67 Aligned_cols=89 Identities=19% Similarity=0.336 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCCcchHHH----hcCcc-ccccceeeeeecCCcccccC------------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPL----VSHSE-FREERVNAFVCNVVNDDLSR------------------------------ 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l----~~~~~-~~~~~~~~~~~D~~~~~~~~------------------------------ 115 (231)
.++.+|+|+|||||.-+..+ +.... ......+++++|+++.++..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 34679999999999853333 22111 01124567888888766530
Q ss_pred --------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 --------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 --------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+++.++||+|+|.++++|+++++...+++++++.|+|||++++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 23467899999999999997667789999999999999999985
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-11 Score=87.64 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++... .+++++|+++.++.. ....++||+|+++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p 91 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG------KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPP 91 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCC
Confidence 345789999999999998887431 145666666554321 112468999999887
Q ss_pred eeccCCC-------------------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEE
Q 045799 131 LSAVSPK-------------------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCS 191 (231)
Q Consensus 131 l~~~~~~-------------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (231)
+++.+.. -...+++++.++|+|||.+++.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~---------------------------- 143 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL---------------------------- 143 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc----------------------------
Confidence 7666321 04578999999999999998864221
Q ss_pred EeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 192 FYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 192 ~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
-...++.+.+++.||+.+.+...+-
T Consensus 144 --~~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 144 --NGEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred --CChHHHHHHHHhCCCeEEEEEEeec
Confidence 1246889999999998888765443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-11 Score=87.54 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------C-CCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------N-VNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~-~~~~~fD~ii~~~ 129 (231)
++.+|||+|||+|..+..++.... ..+++++|.++.++.. . ...++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~----~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP----ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh
Confidence 378999999999999988762211 2245566665543210 1 1247899999865
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+ .+...+++.++++|+|||.+++.
T Consensus 118 -~-----~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 -L-----ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -h-----hCHHHHHHHHHHhcCCCCEEEEE
Confidence 3 34567889999999999999886
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=87.04 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++... . ..+++++|+++.++.. ....++||+|++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~--~--~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~ 105 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQF--P--SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGG 105 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHC--C--CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECC
Confidence 567899999999999998887321 1 2344555555443211 01135799999876
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
..+ ....++..+.+.|+|||++++..... -+..++.+++++.||.
T Consensus 106 ~~~-----~~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 106 SGG-----NLTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLEKCGVS 150 (187)
T ss_pred Ccc-----CHHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHHHCCCC
Confidence 543 35678999999999999998853211 2346788899999987
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
.+++..
T Consensus 151 ~~~~~~ 156 (187)
T PRK08287 151 ELDCVQ 156 (187)
T ss_pred cceEEE
Confidence 665533
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=90.84 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------CCCC--CCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------NVNP--SSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------~~~~--~~fD~ii~~~~l~~~ 134 (231)
.++.+|||+|||+|.++..++... . ..++++|+++.++.. .+.. .+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g---~--~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~--- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG---A--KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILA--- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC---C--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcH---
Confidence 578899999999998887665321 1 146888988776532 1112 279999986432
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
+....++.++.+.|||||.++++.... ...+++.+.+++.||+++...
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 335678999999999999999873221 134678899999999988764
Q ss_pred E
Q 045799 215 I 215 (231)
Q Consensus 215 ~ 215 (231)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 4
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=89.02 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------CCCCCCeeEEEEeeeeeccCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------NVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
...++||||+|.|..+..++.... ++...++|..|... .-.+.+||+|.|.++|... +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~------~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc--~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK------EVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRC--D 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc------eEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhcc--C
Confidence 567899999999999999984322 23334444433211 1135689999999999999 8
Q ss_pred CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-cccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 138 KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++..+|+.+++.|+|+|+++++-..+....-. ... ......+.....+ . ..--....+.+.|+.+||+++.....
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE-~~~g~~~~P~e~l~~~g-~--~~E~~v~~l~~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVE-FGGGKSNRPSELLPVKG-A--TFEEQVSSLVNVFEPAGFEVERWTRL 241 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEE-cCCCCCCCchhhcCCCC-C--cHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 99999999999999999999875333211100 000 0001111111101 0 00011233458999999999998766
Q ss_pred eee
Q 045799 217 LKQ 219 (231)
Q Consensus 217 ~~~ 219 (231)
+..
T Consensus 242 PYL 244 (265)
T PF05219_consen 242 PYL 244 (265)
T ss_pred Ccc
Confidence 543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=90.10 Aligned_cols=96 Identities=26% Similarity=0.498 Sum_probs=65.9
Q ss_pred eeeecCCcccccCC-C-CCCCeeEEEEeeeeeccC--CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcccccc
Q 045799 103 AFVCNVVNDDLSRN-V-NPSSVDVVTLIFMLSAVS--PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMI 178 (231)
Q Consensus 103 ~~~~D~~~~~~~~~-~-~~~~fD~ii~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~ 178 (231)
++-+|+.+...-.+ . ...+||+|++.++++.+. .++....++++.++|||||.|++... +
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~----------------l 201 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV----------------L 201 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE----------------S
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE----------------c
Confidence 56788876554332 1 123699999999999874 45778899999999999999998743 2
Q ss_pred ccceEEeCCCeEE-EeeCHHHHHHHHHHcCceEEEEE
Q 045799 179 GDSFYVRGDGTCS-FYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 179 ~~~~~~~~~~~~~-~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
...+|..+...++ ..++.+.+++.++++||++++.+
T Consensus 202 ~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 202 GSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp S-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred CceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 2334443433333 46899999999999999999987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=86.45 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc----------------cc-c---cCCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN----------------DD-L---SRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~----------------~~-~---~~~~~~~~fD~ii~~~~ 130 (231)
.++.+|||||||+|.++..++.... ....++++|+++ .. + ..++.+++||+|++..+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~---~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIG---DKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC---CCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 6678999999999999988874321 112445555543 11 0 01245678999999776
Q ss_pred eeccCCC--C-------HHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 131 LSAVSPK--K-------MPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 131 l~~~~~~--~-------~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.++.... + ...+++.+.++|+|||.+++..+...+
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 6554211 1 146899999999999999997655544
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=87.95 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
.++.+|||+|||+|..+..++.... ..+++++|+++.++. ..+++++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p----~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP----DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC----CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccce
Confidence 3568999999999999998873211 123455555443321 1145678999
Q ss_pred EEEeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 125 VTLIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 125 ii~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|++.+...+.. ......+++++.++|+|||.+++..
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 99876443221 1125789999999999999999863
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-10 Score=86.06 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ 124 (231)
..++.+|||+|||+|.++..++.... .-.++++|+++.|+.. ++ .++||+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~----~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~ 144 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE----EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDV 144 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCE
Confidence 46788999999999999988874321 1145666666543220 11 246888
Q ss_pred EEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCC-chhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHH
Q 045799 125 VTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIG-DFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTL 202 (231)
Q Consensus 125 ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (231)
|++ +++ +.....+++++++.|||||.+++.-.... +.. . .. .. .. ++..++
T Consensus 145 i~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~-------~-----------~~--~~-~~-~~~~~~ 197 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVT-------K-----------DP--KE-IF-KEEIRK 197 (226)
T ss_pred EEE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCc-------C-----------CH--HH-HH-HHHHHH
Confidence 874 332 12334568999999999999998522110 000 0 00 00 11 345699
Q ss_pred HHHcCceEEEEEEEe
Q 045799 203 FLEAGFSTVDINIHL 217 (231)
Q Consensus 203 l~~~Gf~~~~~~~~~ 217 (231)
++++||++++.....
T Consensus 198 l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 198 LEEGGFEILEVVDLE 212 (226)
T ss_pred HHHcCCeEEEEEcCC
Confidence 999999999876653
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-10 Score=91.86 Aligned_cols=86 Identities=16% Similarity=0.311 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.+..+|||+|||+|.++..++..... .....++++|+++.++. .++++++||+|++.+.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-- 160 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPE-ITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-- 160 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhccc-ccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC--
Confidence 34578999999999999888743211 11235688888766542 2567889999998653
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
+ ..+++++|+|||||++++..++....
T Consensus 161 --~-----~~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 161 --P-----CKAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred --C-----CCHHHHHhhccCCCEEEEEeCCCcch
Confidence 1 13578999999999999987665443
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-10 Score=84.52 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=89.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeee
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~ 132 (231)
..+..+|.|+|||+|..+..|+ .++... .+.++|-|.+|++. .-+....|+++++.+|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~--~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlq 103 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLA--RRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQ 103 (257)
T ss_pred ccccceeeecCCCCCHHHHHHH--HhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhh
Confidence 3567899999999999998888 444433 55788998888753 22557899999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc-c--cccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR-N--QMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
++ ++-..++.++...|.|||++.+--+..-+......... . ..+...+-...- ......++....++|...+-+
T Consensus 104 Wl--pdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~-~r~~v~s~a~Yy~lLa~~~~r 180 (257)
T COG4106 104 WL--PDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGL-TRAPLPSPAAYYELLAPLACR 180 (257)
T ss_pred hc--cccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCcccc-ccCCCCCHHHHHHHhCcccce
Confidence 99 77889999999999999999886433322222111100 0 001111100000 123456788888888776554
Q ss_pred EEE
Q 045799 210 TVD 212 (231)
Q Consensus 210 ~~~ 212 (231)
+--
T Consensus 181 vDi 183 (257)
T COG4106 181 VDI 183 (257)
T ss_pred eee
Confidence 443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=82.31 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=74.8
Q ss_pred ceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc----cc
Q 045799 100 RVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD----RN 175 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~----~~ 175 (231)
+++++..|... .++++++||+|++.++++++ +++..++++++++|||||.+++.++..++........ ..
T Consensus 27 ~i~~~~~d~~~----lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~ 100 (160)
T PLN02232 27 CIEWIEGDAID----LPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDN 100 (160)
T ss_pred ceEEEEechhh----CCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccc
Confidence 46777788753 25678899999999999999 7899999999999999999999998775432111000 00
Q ss_pred ccc-ccceEEe-CC-----CeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 176 QMI-GDSFYVR-GD-----GTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 176 ~~~-~~~~~~~-~~-----~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
... ....... .. .....+++.+++.++|+++||+.+....
T Consensus 101 ~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 101 VVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred hHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 000 0000000 00 0002367999999999999999886544
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-10 Score=83.90 Aligned_cols=111 Identities=15% Similarity=0.310 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC---ccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHH
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH---SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIK 147 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~ 147 (231)
+....|-|+|||.+.++..-... ......+-.++.||+.. .|+++++.|++|+...| +. .++..++.++.
T Consensus 179 ~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~----vPl~d~svDvaV~CLSL--Mg-tn~~df~kEa~ 251 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRN----VPLEDESVDVAVFCLSL--MG-TNLADFIKEAN 251 (325)
T ss_pred cCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccC----CcCccCcccEEEeeHhh--hc-ccHHHHHHHHH
Confidence 56678999999999887532211 11122344567777764 47789999999885543 22 68899999999
Q ss_pred HhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 148 AVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 148 ~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
|+|++||.++|.+... ++-+...+.+.|...||++....+.
T Consensus 252 RiLk~gG~l~IAEv~S----------------------------Rf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 252 RILKPGGLLYIAEVKS----------------------------RFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHhccCceEEEEehhh----------------------------hcccHHHHHHHHHHcCCeeeehhhh
Confidence 9999999999985322 2346778899999999998876543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=87.76 Aligned_cols=108 Identities=21% Similarity=0.361 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~~ 129 (231)
.+.+|||+|||+|.++..++.... ..+++++|+++.++. .++++++||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECC
Confidence 456899999999999998883311 224445554433321 134567899999843
Q ss_pred ee------eccCCC------------------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEe
Q 045799 130 ML------SAVSPK------------------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVR 185 (231)
Q Consensus 130 ~l------~~~~~~------------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (231)
.. +.+..+ ....+++.+.++|+|||.+++..
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~------------------------- 217 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI------------------------- 217 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-------------------------
Confidence 22 112111 12467899999999999998841
Q ss_pred CCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 186 GDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 186 ~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
.+...+++.++|+++||+.+++.
T Consensus 218 ------~~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 218 ------GYDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred ------CccHHHHHHHHHHhCCCCceEEE
Confidence 01245688999999999877653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=81.71 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++.. ++.+++||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEE
Confidence 45679999999999999888743 2244555555433211 22344799999
Q ss_pred EeeeeeccC-------------------CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCC
Q 045799 127 LIFMLSAVS-------------------PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGD 187 (231)
Q Consensus 127 ~~~~l~~~~-------------------~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (231)
+...+.... ......+++++.+.|+|||.+++....
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------- 150 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------- 150 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-------------------------
Confidence 865432210 112466899999999999998875211
Q ss_pred CeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 188 GTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 188 ~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
....+++.+++.++||++..+.
T Consensus 151 -----~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 151 -----LTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred -----cCCHHHHHHHHHHCCCeeeeee
Confidence 1245678999999999887654
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-10 Score=89.00 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. ...+++||+|+++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-----~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan 232 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-----AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVAN 232 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEe
Confidence 467899999999999987776321 1255677776544311 2235689999997
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+ ....++.++.++|+|||.++++.
T Consensus 233 ~~~~-----~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 233 ILAE-----VIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred cCHH-----HHHHHHHHHHHHcCCCcEEEEEe
Confidence 6433 35678999999999999999874
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=87.55 Aligned_cols=150 Identities=21% Similarity=0.362 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCCcchHHHhcC-------------------ccc---------cc----cceeeeeecCCcccccCCCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSH-------------------SEF---------RE----ERVNAFVCNVVNDDLSRNVNP 119 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~-------------------~~~---------~~----~~~~~~~~D~~~~~~~~~~~~ 119 (231)
++.+|||+|||-|..+..+... .+| .. -...++..|.....+...+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7899999999999988877621 011 00 011223333333332223344
Q ss_pred --CCeeEEEEeeeeecc--CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhh---hccccc--------------
Q 045799 120 --SSVDVVTLIFMLSAV--SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKL---LDRNQM-------------- 177 (231)
Q Consensus 120 --~~fD~ii~~~~l~~~--~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~---~~~~~~-------------- 177 (231)
.+||+|-|-+.|||. +++....+|+.+.+.|+|||+++...+....... ..- ......
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~ 221 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDD 221 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCS
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccC
Confidence 499999999999987 3445567999999999999999987544432210 000 000001
Q ss_pred ----cccc--eEEe--CCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeeee
Q 045799 178 ----IGDS--FYVR--GDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 178 ----~~~~--~~~~--~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ 221 (231)
++.. ++.. -+....+....+.+.+++++.||+++....+.....
T Consensus 222 ~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~ 273 (331)
T PF03291_consen 222 FFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYE 273 (331)
T ss_dssp S--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHHHH
T ss_pred CCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHHHH
Confidence 1111 1111 123344667789999999999999998765544433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-11 Score=88.21 Aligned_cols=137 Identities=16% Similarity=0.190 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
+....++|||||-|....++.... .-+.+..|.+..|+ ..+|.++++|+|+++.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-----vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-----VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-----hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh
Confidence 556789999999999999987331 00223334333332 2367889999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
.+|++ +++...+.+++..|||+|.++.+-++...+...+-......+.. ...-.+..+++....++-.+|..+||.
T Consensus 146 slHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER--~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 146 SLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELER--EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred hhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHh--ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 99999 88999999999999999999887666665554332211000000 000111224566778999999999999
Q ss_pred EEEEEEE
Q 045799 210 TVDINIH 216 (231)
Q Consensus 210 ~~~~~~~ 216 (231)
...++..
T Consensus 222 m~tvDtD 228 (325)
T KOG2940|consen 222 MLTVDTD 228 (325)
T ss_pred cceeccc
Confidence 8887654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-10 Score=87.44 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CC-CCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NV-NPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~-~~~~fD~i 125 (231)
.++.+|+|||||.|..+..++....+. +..+.++|.++.++.. .. ..+.||+|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p--~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLP--TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE
Confidence 367899999999887655554221111 1133444444322210 11 23689999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++. ++++++.++...+++.+++.|+|||++++..
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999 8999977899999999999999999999873
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=80.16 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------CCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~~~~~fD~ii~~~~l 131 (231)
+...-|||||||+|.-+..+... +...+++|+|+.|++. ||..+.||.+|+...+
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 35678999999999887555433 5578999999998753 7888999999998876
Q ss_pred ecc---------CCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 132 SAV---------SPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 132 ~~~---------~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.++ |..-+..++..++.+|+.|+..++-
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 654 2222346788899999999999775
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-10 Score=76.47 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.... ..+++++|+++.+++. +...++||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP----NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC----CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEE
Confidence 4567999999999999998874321 1345666665443210 11235899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.... .....+++.+++.|+|||.+++.
T Consensus 94 ~~~~~-----~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 94 IGGSG-----GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ECCcc-----hhHHHHHHHHHHHcCCCCEEEEE
Confidence 86643 34568999999999999999886
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-10 Score=84.86 Aligned_cols=80 Identities=23% Similarity=0.361 Sum_probs=63.2
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCC--CCCeeEEEEee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVN--PSSVDVVTLIF 129 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~--~~~fD~ii~~~ 129 (231)
..++|+|||+|..++-++.+.+ +++++|++..|+.. ++. +++.|+|++..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k------~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK------EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh------hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 3899999999977777765533 56788888887742 223 78999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCe-EEEEEecc
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDG-YILVCDYA 162 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG-~l~i~~~~ 162 (231)
++|++ ++..+++.++|+||+.| .+.+..+.
T Consensus 109 a~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 109 AVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99999 67889999999998765 77766544
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-09 Score=82.52 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------------------cCCCCCCCeeE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------SRNVNPSSVDV 124 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------~~~~~~~~fD~ 124 (231)
...++.+|||+|||+|.++.+++....- .+ .++.+|+++.+. ......+++|+
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~--~G-~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGP--EG-VVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCC--CC-EEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 3478899999999999999999833210 01 344555443211 00112357999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|++... .+++...++.++.+.|||||.+++.
T Consensus 206 V~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 988663 1255666777899999999999984
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=80.49 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~~ 129 (231)
+..+|||+|||+|..+..++.... ...+..+|+++..+. ..+++++||+|+++-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEcc
Confidence 568999999999999998884321 222344444433321 134568999999987
Q ss_pred eeeccCC---CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSP---KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~---~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
-++.-.. +-...+++.+.+.|+|||.+++.
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 6554411 12578899999999999999765
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=84.05 Aligned_cols=106 Identities=21% Similarity=0.341 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------C-CCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------N-VNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~-~~~~~fD~ii 126 (231)
..++.++||+|||+|.++...+.... ..++++|+.+..+.. . ...++||+|+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA-----~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIV 234 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGA-----KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIV 234 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCC-----ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEE
Confidence 35789999999999999988874321 134555554332210 1 1336999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
++- |-.+ ...+...+++.++|||+++++-... --.+.+.+.+++.
T Consensus 235 ANI-LA~v----l~~La~~~~~~lkpgg~lIlSGIl~------------------------------~q~~~V~~a~~~~ 279 (300)
T COG2264 235 ANI-LAEV----LVELAPDIKRLLKPGGRLILSGILE------------------------------DQAESVAEAYEQA 279 (300)
T ss_pred ehh-hHHH----HHHHHHHHHHHcCCCceEEEEeehH------------------------------hHHHHHHHHHHhC
Confidence 976 3333 6788999999999999999872000 0235788899899
Q ss_pred CceEEEEEE
Q 045799 207 GFSTVDINI 215 (231)
Q Consensus 207 Gf~~~~~~~ 215 (231)
||+++++..
T Consensus 280 gf~v~~~~~ 288 (300)
T COG2264 280 GFEVVEVLE 288 (300)
T ss_pred CCeEeEEEe
Confidence 999998754
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-10 Score=89.31 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeeee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~l 131 (231)
...+|||+|||+|.++..++.... ..+++++|++..++.. ....++||+|+++-.+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p----~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPF 271 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSP----KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPF 271 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCc
Confidence 346899999999999988874321 2345666665433321 1124789999999888
Q ss_pred eccC---CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 132 SAVS---PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 132 ~~~~---~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+.. .+....+++.+.+.|+|||.+++..
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 8632 2346789999999999999998864
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=79.10 Aligned_cols=107 Identities=13% Similarity=0.162 Sum_probs=68.9
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ 124 (231)
..++..|||+|||+|.++..++.... ...+++++|.++.+++. +...++||+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~---~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVG---ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 46788999999999999987752210 01233444444333210 112357999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHH
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFL 204 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 204 (231)
|++.. .. .++..+++.+.+.|+|||.+++.... ..+..++...|+
T Consensus 115 V~~~~---~~--~~~~~~l~~~~~~LkpgG~lv~~~~~------------------------------~~~~~~~~~~l~ 159 (198)
T PRK00377 115 IFIGG---GS--EKLKEIISASWEIIKKGGRIVIDAIL------------------------------LETVNNALSALE 159 (198)
T ss_pred EEECC---Cc--ccHHHHHHHHHHHcCCCcEEEEEeec------------------------------HHHHHHHHHHHH
Confidence 99854 22 56788999999999999999874211 113467788888
Q ss_pred HcCceEEEEE
Q 045799 205 EAGFSTVDIN 214 (231)
Q Consensus 205 ~~Gf~~~~~~ 214 (231)
+.||......
T Consensus 160 ~~g~~~~~~~ 169 (198)
T PRK00377 160 NIGFNLEITE 169 (198)
T ss_pred HcCCCeEEEE
Confidence 8998544333
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=75.55 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=83.2
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc--------cCCC---CCCCeeEEEEeeeeeccC-CCCHH
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL--------SRNV---NPSSVDVVTLIFMLSAVS-PKKMP 140 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~--------~~~~---~~~~fD~ii~~~~l~~~~-~~~~~ 140 (231)
..++|||||=+..+...-. .-..++.+|+..... ..|+ ++++||+|+++.||.++| +.++-
T Consensus 52 ~lrlLEVGals~~N~~s~~-------~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-------GWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred cceEEeecccCCCCccccc-------CceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 4799999997554443211 123345555543221 1133 468999999999999998 66777
Q ss_pred HHHHHHHHhcCCCeE-----EEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 141 LILQNIKAVLKPDGY-----ILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 141 ~~l~~~~~~Lk~gG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+++++.+.|+|+|. +++..+.+ .+.. ++|++.+.|.++++..||..++.+.
T Consensus 125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------------Cv~N----------SRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 125 EMLRRAHKFLKPPGLSLFPSLFLVLPLP-------------CVTN----------SRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred HHHHHHHHHhCCCCccCcceEEEEeCch-------------Hhhc----------ccccCHHHHHHHHHhCCcEEEEEEe
Confidence 899999999999999 77653222 1111 3578999999999999999999876
Q ss_pred Eeeeee
Q 045799 216 HLKQIK 221 (231)
Q Consensus 216 ~~~~~~ 221 (231)
..+..+
T Consensus 182 ~~Kl~y 187 (219)
T PF11968_consen 182 SKKLAY 187 (219)
T ss_pred cCeEEE
Confidence 665554
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=82.24 Aligned_cols=158 Identities=16% Similarity=0.245 Sum_probs=93.3
Q ss_pred hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCc-------------------ccc---------ccceeee
Q 045799 53 YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHS-------------------EFR---------EERVNAF 104 (231)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~-------------------~~~---------~~~~~~~ 104 (231)
|+...+.+.. ..++..++++|||-|+.++.+.... +|. .-.+.++
T Consensus 105 wIKs~LI~~y-------~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~ 177 (389)
T KOG1975|consen 105 WIKSVLINLY-------TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI 177 (389)
T ss_pred HHHHHHHHHH-------hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence 6665554444 3678899999999999887775110 000 0012344
Q ss_pred eecCCcccccC--CCCCCCeeEEEEeeeeecc--CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc-ccccc
Q 045799 105 VCNVVNDDLSR--NVNPSSVDVVTLIFMLSAV--SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR-NQMIG 179 (231)
Q Consensus 105 ~~D~~~~~~~~--~~~~~~fD~ii~~~~l~~~--~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~-~~~~~ 179 (231)
.+|.+...+.. ++.+.+||+|-|-+++|+. +.+...-++.++.++|+|||+++-..+ ..+....++... ...++
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP-dsd~Ii~rlr~~e~~~~g 256 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP-DSDVIIKRLRAGEVERFG 256 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC-cHHHHHHHHHhccchhhc
Confidence 44544443332 2345569999999999975 456677889999999999999976522 221111000000 00111
Q ss_pred cce------------------------EEe-CCCeEEEeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 180 DSF------------------------YVR-GDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 180 ~~~------------------------~~~-~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
... +.. ......+......+..++++.|++++.+..+..
T Consensus 257 Ndiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~d 320 (389)
T KOG1975|consen 257 NDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFAD 320 (389)
T ss_pred ceeeeEeeeeecccccCCCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHH
Confidence 111 110 011223456677899999999999998866543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.8e-09 Score=79.70 Aligned_cols=87 Identities=18% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++. ..+++++||+|++.-
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~-----~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 109 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAG-----AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNP 109 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECC
Confidence 556899999999999998877431 014455565544331 123457899999964
Q ss_pred eeeccCC-------------------CCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 130 MLSAVSP-------------------KKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 130 ~l~~~~~-------------------~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
.....+. .....+++++.+.||+||.+++....
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 2221100 01456888999999999999986433
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=81.19 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
.....|||||||+|.++..++... . ..+++++|++..++. ..++++++|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~--p--~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN--P--DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC--C--CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeE
Confidence 345689999999999999888331 1 224455555443321 1134568999
Q ss_pred EEEeeeeeccCCC------CHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 125 VTLIFMLSAVSPK------KMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 125 ii~~~~l~~~~~~------~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|++.+...+.... ....++++++++|||||.+++.+..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9887643332100 1257899999999999999887533
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=87.25 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~i 125 (231)
..+..+||||||+|.++..++.... ...++++|++..++. ..++++++|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P----~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP----NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 4567899999999999999984321 234455555543321 14678899999
Q ss_pred EEeeeeeccCCC----CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVSPK----KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~~~----~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++.+...+.... ....++.+++++|+|||.+.+.+
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 986543332100 12579999999999999999874
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-09 Score=87.67 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=57.7
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~ii 126 (231)
...+|||+|||+|..+..++.... ..+++++|.+..++. ..++..+||+|+
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P----~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIl 303 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVL 303 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEE
Confidence 346999999999999988873321 224455555533221 012345899999
Q ss_pred Eeeeeecc---CCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAV---SPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~---~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++-.+|.. +.+....+++.+++.|+|||.+++..
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 97665532 22234678999999999999998873
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-09 Score=83.09 Aligned_cols=89 Identities=28% Similarity=0.353 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc----------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE----------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~----------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
.+..+|||||+|+|.++..++.... ....+++++..|+. . +++. +|++++.++||++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~----~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-D----PLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-T----CCSS--ESEEEEESSGGGS
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-h----hhcc--ccceeeehhhhhc
Confidence 4557899999999999999982110 01345566666665 2 3444 9999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCC--eEEEEEeccCCch
Q 045799 135 SPKKMPLILQNIKAVLKPD--GYILVCDYAIGDF 166 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~g--G~l~i~~~~~~~~ 166 (231)
++++...+|+++++.|+|| |.++|.++..++.
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 9889999999999999999 9999998776543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=82.43 Aligned_cols=105 Identities=20% Similarity=0.319 Sum_probs=69.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEee
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~ 129 (231)
..++.+|||+|||+|.++...+.... -+++++|+.+.... ......+||+|+++-
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA-----~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI 233 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGA-----KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANI 233 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTB-----SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCC-----CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECC
Confidence 35678999999999999987763311 13455555443321 123458999999866
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
..+ -+..++..+.+.|+|||.++++-... -...++.+.+++ ||+
T Consensus 234 ~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~------------------------------~~~~~v~~a~~~-g~~ 277 (295)
T PF06325_consen 234 LAD-----VLLELAPDIASLLKPGGYLILSGILE------------------------------EQEDEVIEAYKQ-GFE 277 (295)
T ss_dssp -HH-----HHHHHHHHCHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHT-TEE
T ss_pred CHH-----HHHHHHHHHHHhhCCCCEEEEccccH------------------------------HHHHHHHHHHHC-CCE
Confidence 433 35678888999999999999972111 234678888876 999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
+++...
T Consensus 278 ~~~~~~ 283 (295)
T PF06325_consen 278 LVEERE 283 (295)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887643
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.7e-10 Score=83.30 Aligned_cols=89 Identities=18% Similarity=0.348 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCCcchHHHh--cCc---cccccceeeeeecCCcccccC------------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV--SHS---EFREERVNAFVCNVVNDDLSR------------------------------ 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~--~~~---~~~~~~~~~~~~D~~~~~~~~------------------------------ 115 (231)
....+|+..||+||.=+-.++ ... ......+++.+.|++...+..
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 356899999999999666555 111 112225677788887666531
Q ss_pred ---------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 ---------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ---------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+...+.||+|+|.+||-|++++....+++.+++.|+|||+|++.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 22447999999999999998888899999999999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=78.19 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
....+|||+|||+|..+..++.... ..++.++++.+.+.. ......+||+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~----~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTE----KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCC----CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCE
Confidence 4478999999999999988884311 123344444433322 1334458999
Q ss_pred EEEeeee----------------eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCC
Q 045799 125 VTLIFML----------------SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG 188 (231)
Q Consensus 125 ii~~~~l----------------~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (231)
|+|+=-. +|...-+++.+++.+..+||+||.+.+.-
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---------------------------- 170 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---------------------------- 170 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe----------------------------
Confidence 9994211 12222356899999999999999998861
Q ss_pred eEEEeeCHHHHHHHHHHcCceEEEEEEEeeee
Q 045799 189 TCSFYFSEDFLSTLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~ 220 (231)
+.....++.+++.+.+|+...+.-+....
T Consensus 171 ---r~erl~ei~~~l~~~~~~~k~i~~V~p~~ 199 (248)
T COG4123 171 ---RPERLAEIIELLKSYNLEPKRIQFVYPKI 199 (248)
T ss_pred ---cHHHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 11234578889988889888876554443
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=76.06 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccc-----------ccC---------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDD-----------LSR---------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~-----------~~~---------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++.... ....++++|+++.+ ... .+++++||+|++...
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~---~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVG---GKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhC---CCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 6788999999999999887763321 11234555555421 000 134568999998543
Q ss_pred ee--------ccC-CCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 131 LS--------AVS-PKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 131 l~--------~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
.+ |.. .+....++..+.++|+|||++++..+
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 22 110 01236789999999999999998643
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-09 Score=79.89 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------C-CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------R-NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~-~~~~~~fD~ii 126 (231)
.++.+|||+|||+|..+..++.... . .-+++++|+++.+.. . .....+||+|+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~--~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIE--R-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcC--C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 5678999999999999877763211 0 012334444332211 0 11346899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+..++++++ .++.+.|+|||++++.
T Consensus 148 ~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 148 VTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred EccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 999888773 3578999999999875
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-09 Score=81.47 Aligned_cols=108 Identities=20% Similarity=0.368 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|..+..++.... ..+++++|+++.++. .++.+++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~----~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP----DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence 4667999999999999988874321 234455555543211 12234689999984
Q ss_pred ee------eeccCC------------------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEE
Q 045799 129 FM------LSAVSP------------------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYV 184 (231)
Q Consensus 129 ~~------l~~~~~------------------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (231)
-. ++.+++ +....+++++.++|+|||.+++.. +
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g---------------------- 239 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G---------------------- 239 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C----------------------
Confidence 21 111110 123578888999999999998841 0
Q ss_pred eCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 185 RGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
+...+.+.+++++.||..+++
T Consensus 240 --------~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 --------YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred --------chHHHHHHHHHHhCCCceeEE
Confidence 013457889999999975554
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=81.31 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEEe
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~~ 128 (231)
++.+|||+|||+|.++..++.... +.+++++|+++.++. .++++++||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 457899999999999998884321 224455555443321 12345689999985
Q ss_pred e------eeeccCC-----------------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 129 F------MLSAVSP-----------------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 129 ~------~l~~~~~-----------------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
= .+.++++ +....+++.+.+.|+|||.+++.
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 1111110 12367789999999999999875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=79.02 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~ 133 (231)
....+|||+|||+|.++..++.... ..+++++|+++.++.. ...+.+||+|+++-.+.+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~----~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK----PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence 3457999999999999887763311 2356677777665531 113468999999888777
Q ss_pred cCCCCH------------------HHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeC
Q 045799 134 VSPKKM------------------PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFS 195 (231)
Q Consensus 134 ~~~~~~------------------~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
.+..+. .+++......|+|+|.+++. +..... +..-.+
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~-----------------------y~~sl~ 194 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPY-----------------------YDGTMK 194 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eecccc-----------------------ccccCC
Confidence 643322 35566677888888876665 111110 012367
Q ss_pred HHHHHHHHHHcCceE
Q 045799 196 EDFLSTLFLEAGFST 210 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~ 210 (231)
.++..++++++||..
T Consensus 195 ~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 195 SNKYLKWSKQTGLVT 209 (279)
T ss_pred HHHHHHHHHhcCcEe
Confidence 788889999888865
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=83.30 Aligned_cols=106 Identities=14% Similarity=0.215 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CC-CCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NV-NPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~-~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.... ..+++++|+++.++.. .+ ..++||+|++
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p----~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP----DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEE
Confidence 3456999999999999988773211 2244555555444321 11 2357999999
Q ss_pred eeeeeccCC-------------------------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccce
Q 045799 128 IFMLSAVSP-------------------------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSF 182 (231)
Q Consensus 128 ~~~l~~~~~-------------------------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 182 (231)
+=- +++. +....++..+.+.|+|||.+++.. +
T Consensus 326 NPP--YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G-------------------- 382 (423)
T PRK14966 326 NPP--YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G-------------------- 382 (423)
T ss_pred CCC--CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C--------------------
Confidence 431 2110 113467777788999999987641 1
Q ss_pred EEeCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 183 YVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
+-..+.+.+++++.||..+++
T Consensus 383 ----------~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 ----------FDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred ----------ccHHHHHHHHHHHCCCcEEEE
Confidence 123567899999999976655
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.3e-08 Score=70.54 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=75.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCC-CeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPS-SVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~-~fD~ii 126 (231)
..++..++|||||||..+..++... ...+++.+|-.++.+. ..+++. ++|.|+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~----p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiF 107 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAG----PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIF 107 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhC----CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEE
Confidence 5788999999999999999998110 1223333333222211 012222 799999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
.... . ....+++.+...|||||++++..... -+.....+.+++.
T Consensus 108 IGGg-~-----~i~~ile~~~~~l~~ggrlV~naitl------------------------------E~~~~a~~~~~~~ 151 (187)
T COG2242 108 IGGG-G-----NIEEILEAAWERLKPGGRLVANAITL------------------------------ETLAKALEALEQL 151 (187)
T ss_pred ECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecH------------------------------HHHHHHHHHHHHc
Confidence 9886 3 45779999999999999998852111 2445677888899
Q ss_pred Cc-eEEEEEEEeeeeec
Q 045799 207 GF-STVDINIHLKQIKN 222 (231)
Q Consensus 207 Gf-~~~~~~~~~~~~~~ 222 (231)
|+ +++++.+.......
T Consensus 152 g~~ei~~v~is~~~~lg 168 (187)
T COG2242 152 GGREIVQVQISRGKPLG 168 (187)
T ss_pred CCceEEEEEeecceecc
Confidence 99 77777665554443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=81.08 Aligned_cols=132 Identities=18% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCCcchHHHhcCcc------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSE------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
-...+|+|.|.|+.+..++.... +. .++..+.+|.- .. .|. -|+|++-.++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~gV~~v~gdmf----q~-~P~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PGVEHVAGDMF----QD-TPK--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CCcceeccccc----cc-CCC--cCeEEEEeecccC
Confidence 47899999999999999984211 10 12222223322 22 233 3799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCc-hhhhhhhccccccccceE--EeCCCeEEEeeCHHHHHHHHHHcCceEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGD-FAQVKLLDRNQMIGDSFY--VRGDGTCSFYFSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 211 (231)
++++..++|++++..|+|+|.+++.+...+. ......... ........ ...++.. -.+.+++..++.++||.+.
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~-v~~~~d~lm~~~~~~Gk--ert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSS-VTRDMDLLMLTQTSGGK--ERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccc-eeehhHHHHHHHhccce--eccHHHHHhcchhhcCcee
Confidence 9999999999999999999999999874443 111000000 00000000 0111111 2478999999999999888
Q ss_pred EEEE
Q 045799 212 DINI 215 (231)
Q Consensus 212 ~~~~ 215 (231)
++-.
T Consensus 327 ~~~~ 330 (342)
T KOG3178|consen 327 MVAL 330 (342)
T ss_pred EEEe
Confidence 7644
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=83.12 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++..|||+|||+|.++..++.. +..++++|++..++. .++.+++||+|++
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~ 254 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT 254 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence 67789999999999988766521 123444454443321 1334678999999
Q ss_pred eeeeec---cCC----CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 128 IFMLSA---VSP----KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 128 ~~~l~~---~~~----~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.-.... ... +-...+++++.+.|+|||.+++.
T Consensus 255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 532111 100 12578999999999999999876
|
This family is found exclusively in the Archaea. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=79.56 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=54.6
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEEe--
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTLI-- 128 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~~-- 128 (231)
.+|||+|||+|..+..++.... ..+++++|+++.++. .++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCC
Confidence 6899999999999988874321 234555565544431 12334489999985
Q ss_pred -----------eeeeccCC----------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 129 -----------FMLSAVSP----------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 129 -----------~~l~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.++.|-|. +....+++.+.+.|+|||++++.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 12333221 13567899999999999999775
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.1e-09 Score=78.31 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=51.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
..++.+|||||||+|..+..++.... ...+++++|+++.+.. ...+.++||+|+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~---~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVG---KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEE
Confidence 36789999999999999977763211 0113344444332221 012457899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+...++++ .+.+.+.|||||.+++.
T Consensus 151 ~~~~~~~~--------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 151 VTAAGPDI--------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ECCCcccc--------hHHHHHhhCCCcEEEEE
Confidence 98766554 23567789999999885
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-08 Score=66.67 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=57.6
Q ss_pred eEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------C--CCCCCCeeEEEEeee
Q 045799 75 VVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------R--NVNPSSVDVVTLIFM 130 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~--~~~~~~fD~ii~~~~ 130 (231)
+|+|+|||+|..+..++.. ....+.++|.++.... . .....+||+|++..+
T Consensus 1 ~ildig~G~G~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASG-----PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-----CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 4899999999999888741 1234455554432211 0 113568999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++++ .+....+++.+.+.|+++|.+++.
T Consensus 76 ~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9883 278899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-08 Score=78.43 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=52.8
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEEee-
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTLIF- 129 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~~~- 129 (231)
.+|||+|||+|.++..++.... ..+++++|+++.++. ..+++++||+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p----~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCC
Confidence 6899999999999988873311 224445555433321 123446899999851
Q ss_pred -----ee-------eccCC----------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 -----ML-------SAVSP----------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 -----~l-------~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+ +|-|. +....+++.+.+.|+|||.+++.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 12111 12357889999999999999875
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-08 Score=76.19 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii 126 (231)
..++.+|||||||+|.++..++..... ..+++++|.++.++.. ....++||+|+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~---~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEE
Confidence 367889999999999999888733110 1123444444332210 11235899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.....++ ...+.+.|+|||++++.
T Consensus 152 ~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 152 VTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred EcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 87765554 24578899999999875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.5e-08 Score=71.90 Aligned_cols=81 Identities=9% Similarity=0.265 Sum_probs=50.2
Q ss_pred CCCCeeEEEEeee--eeccC--CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEe
Q 045799 118 NPSSVDVVTLIFM--LSAVS--PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFY 193 (231)
Q Consensus 118 ~~~~fD~ii~~~~--l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
....||+|+|..+ .-|++ ++-+..++++++++|.|||+|++..-........ .. ..+.+..+++ ...
T Consensus 163 ~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ka-ar-~~e~~~~ny~-------~i~ 233 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKA-AR-RSEKLAANYF-------KIF 233 (288)
T ss_pred ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHH-HH-HHHHhhcCcc-------cee
Confidence 4568999999776 33554 6778999999999999999998862111111100 00 0011112221 345
Q ss_pred eCHHHHHHHHHHcC
Q 045799 194 FSEDFLSTLFLEAG 207 (231)
Q Consensus 194 ~~~~~l~~~l~~~G 207 (231)
+.++....++.+.+
T Consensus 234 lkp~~f~~~l~q~~ 247 (288)
T KOG2899|consen 234 LKPEDFEDWLNQIV 247 (288)
T ss_pred cCHHHHHhhhhhhh
Confidence 77888888888764
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-08 Score=71.89 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=57.1
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCc---------------------cccccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHS---------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~---------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
..++.+|||||||+|..+.-|+... ...-.++.+...|-+.... +..+||.|+..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~----~~aPyD~I~Vt 145 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP----EEAPYDRIIVT 145 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC----CCCCcCEEEEe
Confidence 4788999999999999998887111 1111236666777765432 34799999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.....+|. .+.+.|++||++++-.
T Consensus 146 aaa~~vP~--------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 146 AAAPEVPE--------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred eccCCCCH--------HHHHhcccCCEEEEEE
Confidence 98877742 3578899999998864
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.5e-08 Score=82.01 Aligned_cols=107 Identities=21% Similarity=0.365 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEEe
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~~ 128 (231)
++.+|||+|||+|.++..++.... ..+++++|+++.++.. .++.++||+|+++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p----~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP----NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEEC
Confidence 346899999999999988873311 2355666666443321 2234689999983
Q ss_pred e--------------eeeccC-------C---CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEE
Q 045799 129 F--------------MLSAVS-------P---KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYV 184 (231)
Q Consensus 129 ~--------------~l~~~~-------~---~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (231)
- +..|-| . +....+++.+.+.|+|||.+++. .+.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~--------------------- 271 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF--------------------- 271 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC---------------------
Confidence 2 111111 0 12345778889999999999774 111
Q ss_pred eCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 185 RGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
-..+.+.+++.+.||..+++
T Consensus 272 ---------~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 ---------KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred ---------chHHHHHHHHHhcCCCceEE
Confidence 13457788888888876654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-08 Score=79.10 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=38.0
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+.||+|+|.+++.|++++....+++++++.|+|||+|++.
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 47899999999999998888999999999999999999885
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-08 Score=76.65 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCCCcchHHHh--cCcc---ccccceeeeeecCCcccccC-------------------------------
Q 045799 72 NPKVVLEVGCGAGNTIFPLV--SHSE---FREERVNAFVCNVVNDDLSR------------------------------- 115 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~--~~~~---~~~~~~~~~~~D~~~~~~~~------------------------------- 115 (231)
...+|...||+||.=.-.+| .... .....+++.+.|++...+..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999999665555 1111 23346777888877655431
Q ss_pred ---------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 ---------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ---------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+...+.||+|+|.+|+-+++.+....++.+++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 11346799999999999998888899999999999999999985
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=71.10 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.... +.+++++|.++.++.. ......+|.++
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~----~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP----KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence 5678999999999999988863211 2345666665444321 00011234443
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.. . ......+++++.+.|+|||.+++..
T Consensus 115 ~~----~--~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IE----G--GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EE----C--CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 31 1 1456889999999999999998874
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-08 Score=67.70 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeEEE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ii 126 (231)
+.+|||+|||+|.++..++... ..++.++|+.+.... ..+.+++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEE
Confidence 4689999999999998887331 123344444433221 135679999999
Q ss_pred EeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++-.+.... .+....+++++.++|+|||.+++..
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 976544221 1234688999999999999998864
|
... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-08 Score=73.90 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc----------------------cCCC-CCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL----------------------SRNV-NPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~----------------------~~~~-~~~~fD~ii 126 (231)
..++.+|||+|||+|..+..++.... .++++|.++.+. ...+ ..++||+|+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~------~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR------RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC------EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEE
Confidence 36778999999999998876652210 223333332221 0111 236899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+...++++ .+.+.+.|+|||.+++...
T Consensus 150 ~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 98766655 2456889999999988643
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.6e-08 Score=74.96 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=77.0
Q ss_pred HHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc-
Q 045799 32 AKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN- 110 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~- 110 (231)
+.+|...+|......|..++.-......+.+... ..+..++|+|||.|.....- ..+-.+++|++.
T Consensus 10 eqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~~~--------p~~~~ig~D~c~~ 76 (293)
T KOG1331|consen 10 EQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLGVN--------PLCLIIGCDLCTG 76 (293)
T ss_pred HHHHhHHHHHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccCcCC--------Ccceeeecchhhh
Confidence 4456666666666555544443333333334332 56889999999999654210 122233333332
Q ss_pred ----------------ccccCCCCCCCeeEEEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 111 ----------------DDLSRNVNPSSVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 111 ----------------~~~~~~~~~~~fD~ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+++..|+.+.+||.+++..++||+. .+-...+++++.+.|+|||...+..+
T Consensus 77 l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 77 LLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 2234477889999999999999996 55678899999999999999777543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-07 Score=71.05 Aligned_cols=140 Identities=15% Similarity=0.236 Sum_probs=89.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------------CCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------NVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~~~~~~fD 123 (231)
..+.+||||+||.|+.....+.... .....+...|.++..++. .--.-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~--~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHP--ERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCC--CCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 4678999999999998776663222 112234455555544321 00123579
Q ss_pred EEEEeeeeeccCCCCH-HHHHHHHHHhcCCCeEEEEEe--ccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHH
Q 045799 124 VVTLIFMLSAVSPKKM-PLILQNIKAVLKPDGYILVCD--YAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLS 200 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~-~~~l~~~~~~Lk~gG~l~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (231)
+++++..++.+++.+. ...++.+++++.|||+++... +++......+.. ....-+..|. ...-+..++.
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~L-tsHr~g~~Wv-------MRrRsq~EmD 283 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVL-TSHRDGKAWV-------MRRRSQAEMD 283 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHH-hcccCCCceE-------EEecCHHHHH
Confidence 9999999999976554 456999999999999998764 222221111111 1111122333 3457899999
Q ss_pred HHHHHcCceEEEEEEEeeee
Q 045799 201 TLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 201 ~~l~~~Gf~~~~~~~~~~~~ 220 (231)
++++++||+-+......+.+
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GI 303 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGI 303 (311)
T ss_pred HHHHHcCCchhhheeccCCc
Confidence 99999999988777666554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=75.16 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc----------------------------cccceeeeeecCCcccccCCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF----------------------------REERVNAFVCNVVNDDLSRNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~----------------------------~~~~~~~~~~D~~~~~~~~~~~~~~f 122 (231)
+++.+||+||||+|..+..++..... ...+++++..|...-. ....++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV---AETENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH---hhCCCcc
Confidence 45689999999999999988743110 1122233333322110 1135789
Q ss_pred eEEEEeeeeeccCCCC--HHHHHHHHHHhcCCCeEEEEE
Q 045799 123 DVVTLIFMLSAVSPKK--MPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|+|++...-.+.+... ...+++.+++.|+|||++++.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999865333222111 267899999999999999875
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.8e-07 Score=71.70 Aligned_cols=130 Identities=16% Similarity=0.240 Sum_probs=82.6
Q ss_pred chhHHHhhHHHhhHHHHHHhccCCcccchh---hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcccccc
Q 045799 23 PLEEHYQSKAKKYWDGFYKRHKNKFFKDRH---YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREE 99 (231)
Q Consensus 23 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~ 99 (231)
..+-.|+....+.|+.+... ..++-.+. -+.....++.... .++..|+|+|||+|.-+..|+....-...
T Consensus 31 p~k~~YD~~Gs~LFe~It~l--pEYYptr~E~~iL~~~~~~Ia~~i-----~~~~~lIELGsG~~~Kt~~LL~aL~~~~~ 103 (319)
T TIGR03439 31 PTLLLYDDEGLKLFEEITYS--PEYYLTNDEIEILKKHSSDIAASI-----PSGSMLVELGSGNLRKVGILLEALERQKK 103 (319)
T ss_pred ChHhhhcchHHHHHHHHHcC--CccCChHHHHHHHHHHHHHHHHhc-----CCCCEEEEECCCchHHHHHHHHHHHhcCC
Confidence 33567788888888887533 22222111 2223333444332 66779999999999988887733221222
Q ss_pred ceeeeeecCCcccccC---------------------------CCC----CCCeeEEEEe-eeeeccCCCCHHHHHHHHH
Q 045799 100 RVNAFVCNVVNDDLSR---------------------------NVN----PSSVDVVTLI-FMLSAVSPKKMPLILQNIK 147 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~---------------------------~~~----~~~fD~ii~~-~~l~~~~~~~~~~~l~~~~ 147 (231)
.+.++.+|+|...+.. .++ .....+++.. .+|..+++++...+|++++
T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~ 183 (319)
T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFL 183 (319)
T ss_pred CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHH
Confidence 4567777777654421 011 1234555554 4799998888999999999
Q ss_pred H-hcCCCeEEEEE
Q 045799 148 A-VLKPDGYILVC 159 (231)
Q Consensus 148 ~-~Lk~gG~l~i~ 159 (231)
+ .|+|||.+++.
T Consensus 184 ~~~l~~~d~lLiG 196 (319)
T TIGR03439 184 ATALSPSDSFLIG 196 (319)
T ss_pred HhhCCCCCEEEEe
Confidence 9 99999998874
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=67.78 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=57.0
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHH
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDF 198 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
.++||+|+..+.+.-. ++....+..|.++|||||+++=. ++--....... ..+...--++.++
T Consensus 163 ~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~--GPLlyh~~~~~-------------~~~~~sveLs~eE 225 (270)
T PF07942_consen 163 KGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINF--GPLLYHFEPMS-------------IPNEMSVELSLEE 225 (270)
T ss_pred CCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEec--CCccccCCCCC-------------CCCCcccCCCHHH
Confidence 4799999999888766 78899999999999999977532 22111000000 0000012378899
Q ss_pred HHHHHHHcCceEEEEEEEee
Q 045799 199 LSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~~~~~ 218 (231)
+..+++..||+++..+....
T Consensus 226 i~~l~~~~GF~~~~~~~~i~ 245 (270)
T PF07942_consen 226 IKELIEKLGFEIEKEESSIL 245 (270)
T ss_pred HHHHHHHCCCEEEEEEEeee
Confidence 99999999999998776443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-07 Score=68.57 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=57.2
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcC--------------------------ccccccceeeeeecCCcccccCCCCCCCe
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSH--------------------------SEFREERVNAFVCNVVNDDLSRNVNPSSV 122 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~--------------------------~~~~~~~~~~~~~D~~~~~~~~~~~~~~f 122 (231)
...++.+|||.|.|+|.++..|+.. ..+. ..+.....|+.... ..+.|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~-----~~~~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGI-----DEEDV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEeccccccc-----ccccc
Confidence 3578999999999999999999810 0111 11334445554332 23489
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|++ .+ .++-.++..+++.|+|||.+++..
T Consensus 165 Dav~L-----Dm--p~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 165 DAVFL-----DL--PDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred CEEEE-----cC--CChHHHHHHHHHHhCCCcEEEEEc
Confidence 99988 44 789999999999999999998863
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-07 Score=70.00 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------CCC---CCCeeEEEEeee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NVN---PSSVDVVTLIFM 130 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~~---~~~fD~ii~~~~ 130 (231)
..+|||+|||+|.++..++.... ..+++++|+++.++.. .++ .++||+|+++=-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~----~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD----GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCC
Confidence 45899999999999988873211 1233444444433210 111 257999998531
Q ss_pred ------eeccCCC------------------CHHHHHHHHHHhcCCCeEEEEE
Q 045799 131 ------LSAVSPK------------------KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 131 ------l~~~~~~------------------~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+..++++ -...++..+.+.|+|||.+++.
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1111110 1357888888999999999875
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=74.04 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------C----CCCCC
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------N----VNPSS 121 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~----~~~~~ 121 (231)
...++.+|||+|||+|..+..++.... + ...++++|++..++.. + ...++
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~--~-~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMG--D-QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhC--C-CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccccc
Confidence 345788999999999999988873211 0 1133444444332210 1 23468
Q ss_pred eeEEEEe------eeeeccCC-------CC-------HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 122 VDVVTLI------FMLSAVSP-------KK-------MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 122 fD~ii~~------~~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
||.|++. .++.+-|+ ++ ...++..+.+.|||||.++.++.+.
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999973 34444321 01 4688999999999999998876444
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-07 Score=72.25 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
..+.+|||+|||.|.++..++.... ..++..+|++...++ .+..+ +||+|+++
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisN 231 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISN 231 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCC----CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeC
Confidence 4456999999999999999984322 112233333322211 12233 89999998
Q ss_pred eeeeccC---CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVS---PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~---~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
=-||-=- ..--.++++...+.|++||.+.+.-
T Consensus 232 PPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 232 PPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred CCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 7776321 1112489999999999999998874
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=67.43 Aligned_cols=83 Identities=24% Similarity=0.342 Sum_probs=54.9
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhc---------------------Ccccc----ccceeeeeecCCcccccCCCCCCCee
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVS---------------------HSEFR----EERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~---------------------~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
...++.+|||.|.|+|.++..|+. ..++. ...+.+...|+...-+.... +..+|
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~~~D 115 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ESDFD 115 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--TTSEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-cCccc
Confidence 358999999999999999999981 01111 23566777888754442222 36899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhc-CCCeEEEEE
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVL-KPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~L-k~gG~l~i~ 159 (231)
.|++ .+ .++-.++..+.+.| ++||++.+-
T Consensus 116 avfL-----Dl--p~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 116 AVFL-----DL--PDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp EEEE-----ES--SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred EEEE-----eC--CCHHHHHHHHHHHHhcCCceEEEE
Confidence 9988 44 67888999999999 899999775
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-07 Score=78.74 Aligned_cols=92 Identities=21% Similarity=0.315 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-------cc--ccceeee---eecCC---cccccCCCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-------FR--EERVNAF---VCNVV---NDDLSRNVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-------~~--~~~~~~~---~~D~~---~~~~~~~~~~~~fD~ii~~~~l~~~~ 135 (231)
..-..+||+|||+|.++..|+...- .. ...+++. ++-.. -..-..||+++.||+|.|..++....
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~ 195 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWH 195 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccch
Confidence 3345699999999999999983310 00 0011111 00000 00113488999999999998865443
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 136 PKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..+ .-+|-++.|+|+|||+++.+....
T Consensus 196 ~~~-g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 196 PND-GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hcc-cceeehhhhhhccCceEEecCCcc
Confidence 222 457889999999999998875443
|
; GO: 0008168 methyltransferase activity |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=73.69 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=57.0
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDV 124 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ 124 (231)
...++.+|||+|||+|..+..++.... +..++++|.++.++.. .+..++||.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAP----QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence 346788999999999999988874321 1234444544433210 123467999
Q ss_pred EEEee------eeeccC-------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 125 VTLIF------MLSAVS-------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 125 ii~~~------~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|++.. ++.+-| ++ ....++..+.+.|||||.++.++.+.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99522 121111 01 12478999999999999999876433
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=69.30 Aligned_cols=101 Identities=19% Similarity=0.336 Sum_probs=67.6
Q ss_pred eEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------CC--CCCCeeEEEEeeeeec
Q 045799 75 VVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NV--NPSSVDVVTLIFMLSA 133 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~--~~~~fD~ii~~~~l~~ 133 (231)
+|||+|||+|..+..++.... ..+++++|+++..+.. .| -.++||+|+++= -|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNP--PY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNP--PY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc----CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCC--CC
Confidence 799999999999999985432 2466777777644421 01 124899999943 12
Q ss_pred cCCC-------------------------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCC
Q 045799 134 VSPK-------------------------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG 188 (231)
Q Consensus 134 ~~~~-------------------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (231)
+|.+ -...++..+.+.|+|||.+++.. +
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~-g-------------------------- 239 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI-G-------------------------- 239 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE-C--------------------------
Confidence 2211 23577888899999999887751 1
Q ss_pred eEEEeeCHHHHHHHHHHcC-ceEEE
Q 045799 189 TCSFYFSEDFLSTLFLEAG-FSTVD 212 (231)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~G-f~~~~ 212 (231)
+-..+.+.+++.+.| |..+.
T Consensus 240 ----~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 240 ----LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred ----CCcHHHHHHHHHhcCCceEEE
Confidence 123567889999999 55443
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-07 Score=71.58 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc--------------------c----cccceeeeeecCCcccccCCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE--------------------F----REERVNAFVCNVVNDDLSRNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~--------------------~----~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++.... + ...+++++..|..... .-..++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l---~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI---AVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH---HhCCCCCCEEE
Confidence 4567999999999999988873211 0 0122333333332111 11235899999
Q ss_pred Eeeee-eccCC-CCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 127 LIFML-SAVSP-KKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 127 ~~~~l-~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+...- ...+. -....+++.+++.|+|||++++..+..
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 75311 11111 123789999999999999999854433
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-07 Score=71.50 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=54.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
+.+.+||+||||+|..+..++.... ..++..+|+++..+.. ....++|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~----~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS----VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC----cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 3456999999999999988874321 1133444444332110 0014689
Q ss_pred eEEEEeeeeeccCCCC--HHHHHHHHHHhcCCCeEEEEE
Q 045799 123 DVVTLIFMLSAVSPKK--MPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|+|++......-+... ...+++.+++.|+|||++++.
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9999865422222222 467899999999999999886
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=71.12 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------------CCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------------NVNP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------------~~~~ 119 (231)
..+.+||+||||+|..+..++.... ..++..+|+.+.+++. ....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~----v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET----VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 5567999999999998887773211 1122333333222110 1134
Q ss_pred CCeeEEEEeeeee---ccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 120 SSVDVVTLIFMLS---AVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 120 ~~fD~ii~~~~l~---~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++||+|++...-. ....--...+++.+++.|+|||++++.
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 6899999864211 011112256899999999999998775
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.2e-07 Score=75.42 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CC--CCCCe
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NV--NPSSV 122 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~--~~~~f 122 (231)
...++.+|||+|||+|..+..++.... ...++++|++..++.. +. ..++|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~----~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP----QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccccc
Confidence 345788999999999999988874321 1234445544433210 11 35679
Q ss_pred eEEEE------eeeeeccCCC--------------CHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 123 DVVTL------IFMLSAVSPK--------------KMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 123 D~ii~------~~~l~~~~~~--------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
|.|++ .+++++.|+- ....++..+.++|||||.++.++.+..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99996 2455554310 136799999999999999999876553
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=64.90 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCc--------------------ccc----ccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHS--------------------EFR----EERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~--------------------~~~----~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
.+.+.+|||.+.|-|.++...+... .|+ ...+.++..|.. ++-..|.|++||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~--e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY--EVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH--HHHhcCCccccceE
Confidence 4578999999999999998877221 111 113344444442 12236789999998
Q ss_pred EEeee-eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHH
Q 045799 126 TLIFM-LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFL 204 (231)
Q Consensus 126 i~~~~-l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 204 (231)
+--=- |.+...--...++.+++|+|||||.++-..-.+..... + .--...+.+.|.
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr----------G-------------~d~~~gVa~RLr 266 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR----------G-------------LDLPKGVAERLR 266 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc----------c-------------CChhHHHHHHHH
Confidence 75110 11111112467999999999999999876433321110 0 012367889999
Q ss_pred HcCceEEEEEE
Q 045799 205 EAGFSTVDINI 215 (231)
Q Consensus 205 ~~Gf~~~~~~~ 215 (231)
++||++++...
T Consensus 267 ~vGF~~v~~~~ 277 (287)
T COG2521 267 RVGFEVVKKVR 277 (287)
T ss_pred hcCceeeeeeh
Confidence 99999877544
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-07 Score=69.75 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCc------------------------cccccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHS------------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~------------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
..++.+|||||||+|..+..++... .....++.+...|...... ...+||.|
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~----~~apfD~I 145 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP----EEAPFDRI 145 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG----GG-SEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc----cCCCcCEE
Confidence 4789999999999999998777110 0001234455555442211 24689999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++......+| ..+.+.|++||++++-
T Consensus 146 ~v~~a~~~ip--------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 146 IVTAAVPEIP--------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp EESSBBSS----------HHHHHTEEEEEEEEEE
T ss_pred EEeeccchHH--------HHHHHhcCCCcEEEEE
Confidence 9998776552 2367789999999885
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.5e-08 Score=68.47 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=43.7
Q ss_pred ccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 113 LSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 113 ~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+|.+++.|+|.+.++++|+..++-..+++++++.|||||.+-++.
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 345789999999999999999987888899999999999999999874
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-07 Score=66.75 Aligned_cols=89 Identities=24% Similarity=0.250 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-------------------------ccccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-------------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
.++.+|||+|||+|..+..++.... .....+.+...|-...........++||+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 6678999999999988877763310 011222333333221110011234689999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++..++..- +....+++.+.++|+++|.+++...
T Consensus 124 lasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 124 LASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999999876 7889999999999999988777643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.40 E-value=9e-07 Score=70.87 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---------------------------ccccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---------------------------FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+++++||+||||.|..+..++.+.. +...+++++..|...-. ...++++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l--~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL--KNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH--hhccCCCCC
Confidence 5678999999999999998874311 11122333333321110 012356899
Q ss_pred EEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+|++-..-.+.+.. -...+++.+++.|+|||++++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99985533322211 1357899999999999999763
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.9e-07 Score=74.90 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~ 127 (231)
..++.+|||+|||+|..+..++.... . ...++++|+++.++.. ..++++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~--~-~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQ--N-RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhC--C-CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 45678999999999998877763211 0 1144555555544321 113467999996
Q ss_pred e------eeeec-------cCCC-------CHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 128 I------FMLSA-------VSPK-------KMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 128 ~------~~l~~-------~~~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
- .++.. ..++ ....++..+.+.|+|||+++.++.+..
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 11211 1111 124689999999999999999875554
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.5e-07 Score=67.95 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=52.2
Q ss_pred CeEEEEcCCCCcchHHHhcCcc-----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSE-----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~-----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~ 130 (231)
..+||||||.|.++..+|.... ..-.++.++.+|... .+..-++++++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~-~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE-LLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT-HHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH-HHhhcccCCchheEEEeCC
Confidence 3899999999999999982211 011233444444432 1111345689999998664
Q ss_pred eeccCC------CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 131 LSAVSP------KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 131 l~~~~~------~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
=-+... =-...++..++++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 332210 012589999999999999998874
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=78.10 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~~~~fD~ 124 (231)
.++.+|||+|||+|.++..++.... ..++.+|.++.++.. .-..++||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga-----~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGA-----KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCC-----CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCE
Confidence 3478999999999999999883210 123444444333211 001468999
Q ss_pred EEEee-----------eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIF-----------MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~-----------~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|++.= ++... .+...++..+.++|+|||.+++.
T Consensus 612 IilDPP~f~~~~~~~~~~~~~--~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQ--RDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred EEECCCCCCCCCccchhhhHH--HHHHHHHHHHHHHcCCCCEEEEE
Confidence 99842 11111 34567888999999999999876
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=62.60 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=55.5
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHH
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFL 199 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (231)
+.||+|+..+.+... .+.-..+..|+.+|||||+++=.-+....+... . .. ......-++.+++
T Consensus 258 ~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~-----~-g~--------~~~~siEls~edl 321 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFEDT-----H-GV--------ENEMSIELSLEDL 321 (369)
T ss_pred CccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccCC-----C-CC--------cccccccccHHHH
Confidence 579999999888766 788899999999999999997532221111110 0 00 0011123688999
Q ss_pred HHHHHHcCceEEEEE
Q 045799 200 STLFLEAGFSTVDIN 214 (231)
Q Consensus 200 ~~~l~~~Gf~~~~~~ 214 (231)
.++.+..||++++.+
T Consensus 322 ~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 322 KRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHhcCcEEEEee
Confidence 999999999999876
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-06 Score=71.83 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc------------------------------ccccceeeeeecCCcccccCCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE------------------------------FREERVNAFVCNVVNDDLSRNVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~------------------------------~~~~~~~~~~~D~~~~~~~~~~~~~ 120 (231)
+++++|||||||+|..+..++.+.. +.+.+++++..|..... ....+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l---~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL---RKLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH---HhCCC
Confidence 4568999999999999988874311 01122333333332111 11246
Q ss_pred CeeEEEEeeeeeccCC---CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 121 SVDVVTLIFMLSAVSP---KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~---~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+||+|++.......+. --...+++.+++.|+|||++++.
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 8999999753322210 11246899999999999999875
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.8e-07 Score=71.05 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++..... ...++++|.++.++.. ....++||+|++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~---~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEE
Confidence 56789999999999999888743210 1124455555433210 112357999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
...+.++ ...+.+.|+|||.+++.
T Consensus 156 ~~g~~~i--------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 156 TVGVDEV--------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCchHHh--------HHHHHHhcCCCCEEEEE
Confidence 7655544 23467799999998875
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-06 Score=66.77 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii 126 (231)
..++.+|||+|||+|..+..++.... +. -.++.+|++..++.. +...++||.|+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~--~~-g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMK--NE-GAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcC--CC-CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 36788999999999999988873211 00 134555555443311 11235699999
Q ss_pred Eee------eeeccCC-------C-------CHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 127 LIF------MLSAVSP-------K-------KMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 127 ~~~------~l~~~~~-------~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
+.- ++.+-|. + ....+|..+.+.|||||+++.++.+..
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 732 2222110 0 124589999999999999988765443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=68.20 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------------CCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------------RNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------------~~~~~~~fD 123 (231)
.++.+|||+|||+|.++..++... ..++++|+++.++. .++.+++||
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCC
Confidence 566899999999999999887321 13344444443331 123345788
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|++. -|.......++.+.+ ++|+++++++.
T Consensus 370 ~Vi~d-----PPr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 370 KVLLD-----PPRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred EEEEC-----cCCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 88762 233334456665655 58888888873
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-06 Score=71.00 Aligned_cols=92 Identities=9% Similarity=0.100 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------C-CCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------N-VNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~-~~~~~fD~i 125 (231)
..++.+|||+|||+|..+.+++.... ....++.+|++..++.. + +.+++||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMK---DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEE
Confidence 46788999999999999988873211 01134455554443311 1 235689999
Q ss_pred EEee------eeeccC-------C-------CCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 126 TLIF------MLSAVS-------P-------KKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 126 i~~~------~l~~~~-------~-------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
++.. ++..-| + .....++..+.+.|||||.++.++.+..
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9722 222111 0 0235678999999999999988765554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=67.65 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~ 124 (231)
..++.+|||+|||+|..+..++.... ....++++|++..++. ..++ ++||+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLK---NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCE
Confidence 45678999999999999988874210 0113444454433221 0112 68999
Q ss_pred EEEee------eeeccCC-------CC-------HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 125 VTLIF------MLSAVSP-------KK-------MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 125 ii~~~------~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|++.. ++.+-|. .+ ...++..+.+.|||||.++.++.+.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99742 2222210 01 2468999999999999998765333
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.8e-06 Score=64.17 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=55.4
Q ss_pred CeEEEEcCCCCcchHHHhcCcc----------------------cccc-ceeeeeecCCcccccCCCCCCCeeEEEEeee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSE----------------------FREE-RVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~----------------------~~~~-~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~ 130 (231)
..+||||||.|.+...+|.... -..- ++.+++.|... -+..-+++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~-~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE-VLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH-HHHhcCCCCCeeEEEEECC
Confidence 5899999999999999993211 0011 34444444431 1122345569999999774
Q ss_pred eeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 131 LSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 131 l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
=-+-. +=-...+++.+.+.|+|||.+.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 32221 0012579999999999999999874
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-06 Score=69.77 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc------------------------cccccceeeeeecCCcccccCCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS------------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~------------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++...+... ......+.++..|+...........++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 357899999999999987755210 00001233444444321100011245899999
Q ss_pred EeeeeeccCC---------CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAVSP---------KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~~~---------~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+.=- ++.. .....++..+.++|+|||.++...
T Consensus 299 lDPP--~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPP--KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCC--CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7532 1111 134456667889999999998753
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-06 Score=64.99 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------------CCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------------NVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------------~~~~~ 120 (231)
.++.+|||+|||+|.-+.+++....- ..+++.+|..+..... ..+.+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~---~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPE---DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 56789999999999988777622110 1134444444332210 01246
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+||+|++-. +.+....++..+.++|+|||++++.+
T Consensus 144 ~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 144 EFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 899998743 22456678999999999999988764
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.3e-06 Score=64.22 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
-.+.+|||+|||+|.-+..+. ..+. ...+++++|.++.+... ..+....|+|++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~--~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~ 108 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAR--EVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIA 108 (274)
T ss_pred CCCceEEEecCChHHHHHHHH--HHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEE
Confidence 345799999999997554433 3333 33466778887766532 011234599999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
+++|..++.+....+++.+.+.+.+ ++++.+.+.+.
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 9999999877778888888887765 88888776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.8e-06 Score=63.05 Aligned_cols=83 Identities=7% Similarity=0.105 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeecc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~~ 134 (231)
.+.+|||+|||+|.++..++...... ...++.++|+.+.++.. ...+++||+||++=-+.-.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~-~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYA-KPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccC-CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCc
Confidence 36799999999999998776321110 12244555555443321 1124689999995433311
Q ss_pred CC----------CCHHHHHHHHHHhcCCCeE
Q 045799 135 SP----------KKMPLILQNIKAVLKPDGY 155 (231)
Q Consensus 135 ~~----------~~~~~~l~~~~~~Lk~gG~ 155 (231)
.. .-...++.++.+++++|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 1245688999997777765
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=57.58 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred hhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCc---------------------cccccceeeeeecCCc
Q 045799 52 HYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHS---------------------EFREERVNAFVCNVVN 110 (231)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~---------------------~~~~~~~~~~~~D~~~ 110 (231)
+++.+...... +..++.-|||+|.|||.++..+++.. .|. +.+++..|...
T Consensus 34 s~lA~~M~s~I------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVI------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--GVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhcc------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--Cccccccchhh
Confidence 35566655444 34678899999999999999998331 111 22223333321
Q ss_pred ccc-cCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 111 DDL-SRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 111 ~~~-~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..- ...+.+..||.||+.--+-.+|.....++++.+...|.+||.++.-.+++
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 110 01346678999999988888887788899999999999999998877664
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.4e-06 Score=63.38 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------------CCCCCCee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------------NVNPSSVD 123 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------------~~~~~~fD 123 (231)
+..|||+|||+|..+..++.... .+.++.+|+++..+.. +...+++|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~----~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP----QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC----CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence 44799999999999999984432 4566677777655421 34568999
Q ss_pred EEEEeeeeeccCC--------------------------CCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 124 VVTLIFMLSAVSP--------------------------KKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 124 ~ii~~~~l~~~~~--------------------------~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+++++= .|++. +....++.-+.|.|+|||.+.+...
T Consensus 225 llvsNP--PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 225 LLVSNP--PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred EEecCC--CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 999843 11111 1224567778899999999988643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=58.10 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++... .+++++|+++.+. ..++++.+||.|+++-
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA------ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC------CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC
Confidence 556799999999999999998431 1233333332221 1123445689888754
Q ss_pred eeeccCCCCHHHHHHHHHHh--cCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAV--LKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~--Lk~gG~l~i~ 159 (231)
..+ + ...++.++.+. +.++|.+++.
T Consensus 86 Py~-~----~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 86 PYN-I----STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred Ccc-c----HHHHHHHHHhcCCCcceEEEEEE
Confidence 332 2 23444444433 3467777664
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.6e-07 Score=66.26 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------CCCCCCeeEEEEeeeeeccCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------NVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
.+.++||+|+|.|..+..++...+ .+...++|..|... .-.+-+||+|.|.+++.-. .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe------evyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc--~ 183 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE------EVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRC--F 183 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH------HHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhh--c
Confidence 457899999999999988873211 11122222222110 1134579999999999877 7
Q ss_pred CHHHHHHHHHHhcCC-CeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 138 KMPLILQNIKAVLKP-DGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++-.+++.+..+|+| +|.++++-..+..... .....+......-+....|. ..--....+-++|+++||.++.....
T Consensus 184 ~p~kLL~Di~~vl~psngrvivaLVLP~~hYV-E~N~~g~~~rPdn~Le~~Gr-~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYV-ETNTSGLPLRPDNLLENNGR-SFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEEEEeccccee-ecCCCCCcCCchHHHHhcCc-cHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 889999999999999 8988876433321110 00101100000000001110 11011234678899999998775544
Q ss_pred e
Q 045799 217 L 217 (231)
Q Consensus 217 ~ 217 (231)
+
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 3
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.6e-05 Score=60.86 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------CC-----CCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------NV-----NPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------~~-----~~~~fD~ii~~~~l 131 (231)
.++..+||+|||||.++..++... .-.++++|++..++.. .+ .+-..|++.+--+|
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-----a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-----AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 467899999999999999887541 1256777877644431 00 00111333222222
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 211 (231)
.. ...++..+.++|++ |.+++.- .|.+.-.+ ......-...... .+..-.+.+...+.+.||++.
T Consensus 149 iS-----~~~~l~~i~~~l~~-~~~~~L~--KPqFE~~~-----~~~~~~giv~~~~--~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 149 IS-----LISILPELDLLLNP-NDLTLLF--KPQFEAGR-----EKKNKKGVVRDKE--AIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ee-----hHhHHHHHHHHhCc-CeEEEEc--ChHhhhcH-----hhcCcCCeecCHH--HHHHHHHHHHHHHHcCCCeEe
Confidence 11 23367889999999 7776542 22211100 0010000000000 011234566777778899988
Q ss_pred EEEE
Q 045799 212 DINI 215 (231)
Q Consensus 212 ~~~~ 215 (231)
.+..
T Consensus 214 ~~~~ 217 (228)
T TIGR00478 214 KIIF 217 (228)
T ss_pred eEEE
Confidence 7665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=60.58 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCCCCCeeEEEEeeeeeccC--CC----------------------------------CHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 NVNPSSVDVVTLIFMLSAVS--PK----------------------------------KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~--~~----------------------------------~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
-||+++.++++++..+|+++ |+ |+..+|+.-++=|.|||.+++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 36889999999999999985 11 1334566666779999999998
Q ss_pred eccCCchhhh-h----------hhcc-ccccccceEEe----CCCeEEEeeCHHHHHHHHHHcC-ceEEEEEEEe
Q 045799 160 DYAIGDFAQV-K----------LLDR-NQMIGDSFYVR----GDGTCSFYFSEDFLSTLFLEAG-FSTVDINIHL 217 (231)
Q Consensus 160 ~~~~~~~~~~-~----------~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~~ 217 (231)
-.+..+.... . +... .....+..... .-....++.+.+++++.+++.| |++.+++.+.
T Consensus 237 ~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~ 311 (386)
T PLN02668 237 CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFK 311 (386)
T ss_pred EecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEee
Confidence 7666431100 0 0000 00001111000 0011234678999999999887 7888887754
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.9e-05 Score=56.30 Aligned_cols=74 Identities=28% Similarity=0.365 Sum_probs=51.7
Q ss_pred eEEEEcCCCCcchHHHhcCc-----------------------cccccceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 75 VVLEVGCGAGNTIFPLVSHS-----------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~-----------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
+++|||+|.|-.+..++-.. ...-.++.+....+.. .....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRAv- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARAV- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEESS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeehh-
Confidence 89999999999999998100 0001234444444432 235689999999775
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..+..++.-+...+++||.+++.
T Consensus 125 -----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 -----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 55778999999999999999886
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.4e-05 Score=58.37 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------------CCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------NVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~~~~~~fD 123 (231)
...++|||||++.|.-+.+|+..... ..+.+.+|..++.... ....++||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCcc
Confidence 57899999999999999999833221 1133344433322210 13468999
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+|+.-. ...+...++..+.++|+|||++++-....
T Consensus 135 liFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 135 LVFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred EEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 998733 23567889999999999999998865333
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.9e-05 Score=62.98 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++.+|||+|||+|.++..++.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHH
Confidence 4568999999999999999873
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.2e-05 Score=58.38 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------------CCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------------NVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------------~~~~~ 120 (231)
....+||||||++|.-+.+++.... .+.+++.+|..+..... .-+.+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~---~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALP---EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTST---TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhc---ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 4568999999999999999983211 01233444443322110 11235
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+||+|+.-. +..+....+..+.++|+|||++++-+..
T Consensus 121 ~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 121 QFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp SEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 899999854 2356778889999999999999886433
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.5e-05 Score=55.71 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCC--CCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVN--PSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~--~~~fD~ii~~~ 129 (231)
.+.++||+||++|.++..++... .....++++|+...... ..+. .+.+|+|++-.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~---~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG---GPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST---TTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred cccEEEEcCCcccceeeeeeecc---cccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceecccc
Confidence 56899999999999999998554 12346677777654110 0112 26999999976
Q ss_pred eeeccCC---------CCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 130 MLSAVSP---------KKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 130 ~l~~~~~---------~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
....-.. +-....+.-+...|+|||.+++..+..
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 100 APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp -----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 3322210 111234445567799999998875443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=3e-05 Score=66.56 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc-------------------------cccCCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND-------------------------DLSRNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~-------------------------~~~~~~~~~~fD~i 125 (231)
.....+||||||.|.++..+|.... ...++++|+... .+...++++++|.|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p----~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP----DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 4567899999999999999983211 122333333221 11224577889999
Q ss_pred EEeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+..+.=-|.. +=-...+++.+++.|+|||.+.+.+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9866433221 0012578999999999999998863
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.9e-05 Score=60.03 Aligned_cols=147 Identities=16% Similarity=0.250 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC------cc------ccccceeeeeecCCcccccC-----------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH------SE------FREERVNAFVCNVVNDDLSR----------------------- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~------~~------~~~~~~~~~~~D~~~~~~~~----------------------- 115 (231)
+...+|.|+||.+|.++..+... .. -....++++--|+-..++..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 56679999999999999888711 01 22345677777776555421
Q ss_pred -------CCCCCCeeEEEEeeeeeccC--CCC-----------------------------------HHHHHHHHHHhcC
Q 045799 116 -------NVNPSSVDVVTLIFMLSAVS--PKK-----------------------------------MPLILQNIKAVLK 151 (231)
Q Consensus 116 -------~~~~~~fD~ii~~~~l~~~~--~~~-----------------------------------~~~~l~~~~~~Lk 151 (231)
-+|+++.|+++++..+|+++ |+. +..+|+.=++=|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 36889999999999999874 111 1345556667789
Q ss_pred CCeEEEEEeccCCchhhhhh------hcc----ccccccceEEeC--C--CeEEEeeCHHHHHHHHHHcC-ceEEEEEEE
Q 045799 152 PDGYILVCDYAIGDFAQVKL------LDR----NQMIGDSFYVRG--D--GTCSFYFSEDFLSTLFLEAG-FSTVDINIH 216 (231)
Q Consensus 152 ~gG~l~i~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~ 216 (231)
|||++++.-.+..+...... ... .....++..... + ....++.+.+++...+++.| |++..++..
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~ 254 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELF 254 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEE
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEE
Confidence 99999998766655211000 000 000111110000 0 11134678999999998876 888777766
Q ss_pred e
Q 045799 217 L 217 (231)
Q Consensus 217 ~ 217 (231)
.
T Consensus 255 ~ 255 (334)
T PF03492_consen 255 E 255 (334)
T ss_dssp E
T ss_pred e
Confidence 5
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=59.22 Aligned_cols=36 Identities=11% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
++.+|||+|||+|.++..++.. ..+++++|+++.++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av 208 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAI 208 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHH
Confidence 4689999999999999998843 12445555554443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00022 Score=51.74 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~~~fD~ii~~~ 129 (231)
....-+||||||+|..+.+|++... ..+.++..|+.+.... ..+..++.|+++.+=
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~---~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIG---PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcC---CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 3467899999999999998883322 2233444454443322 133447788877643
Q ss_pred eeeccC---------------------CCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVS---------------------PKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~---------------------~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.++| ++-.+.++..+-.+|.|.|++++.
T Consensus 119 --PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 119 --PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred --CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 1222 111356667777888889988876
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.4e-05 Score=57.15 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhc-----------------------------------CccccccceeeeeecCCcccccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS-----------------------------------HSEFREERVNAFVCNVVNDDLSR 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~-----------------------------------~~~~~~~~~~~~~~D~~~~~~~~ 115 (231)
.++.+.||+|+|+|.++..++. ...+....+.++..|....
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g---- 156 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG---- 156 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc----
Confidence 8899999999999999887760 0111122333333343322
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..+..+||.|.+...- ..+-+++...|++||.+++.
T Consensus 157 ~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEe
Confidence 2245799999997532 23456677889999999885
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.7e-05 Score=60.49 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-------------------------ccceeeeeecCCcccccC--CCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-------------------------EERVNAFVCNVVNDDLSR--NVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-------------------------~~~~~~~~~D~~~~~~~~--~~~~~~fD 123 (231)
.+.++||||||++|..+.+++....-. ...+++...|.....-.. .-..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 567899999999999999887311000 012223333322110000 00135899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+|+.-. +..+....+..+.++|+|||++++-+.
T Consensus 197 ~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 197 FAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 998844 235667889999999999999988643
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.3e-05 Score=68.84 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCcchHHHh
Q 045799 73 PKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~ 91 (231)
+.+|||+|||+|..+..++
T Consensus 119 ~~~VLDlG~GSG~Iai~La 137 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIA 137 (1082)
T ss_pred CCEEEEEecchHHHHHHHH
Confidence 4689999999999999987
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.5e-05 Score=63.81 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
.++..++|+|||-|.....++.... +-.....++..|+- ..+++++.||.+.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~----~~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFG----KMPFEDNTFDGVRF 184 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhh----cCCCCccccCcEEE
Confidence 4556899999999999988872110 00111112233332 23688999999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..+..|. .+...+++++++.++|||++++.++..
T Consensus 185 ld~~~~~--~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 185 LEVVCHA--PDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred EeecccC--CcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 9999999 789999999999999999999876544
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.7e-05 Score=62.20 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
-+++.|||||||||.++...+.... .-...+.++...+. ++ .+|-++.|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvE--di--~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVE--DI--ELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceE--EE--ecCccceeEEeeh
Confidence 4678999999999999987762210 00112222333222 11 2346899999996
Q ss_pred eeeeccC-CCCHHHHHHHHHHhcCCCeEEEE
Q 045799 129 FMLSAVS-PKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 129 ~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
++=.++- +.=+..++-.--+.|+|||.++-
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 5422221 11234455555689999999863
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=56.20 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CC---CCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NV---NPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~---~~~~fD~ii 126 (231)
+++++||=||.|.|..++.++.+.. ++..+|+.+..++. .+ ..++||+||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~------~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT------HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC------eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEE
Confidence 6779999999999999999986631 44444544333211 11 236899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.-.. ....+++.+++.|+|||+++.-
T Consensus 145 vDs~-------~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 145 CLQE-------PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EcCC-------CChHHHHHHHHhcCCCcEEEEC
Confidence 8542 2356889999999999999874
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00041 Score=55.91 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
..+.++||||||+|.....++
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa 133 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIG 133 (321)
T ss_pred CCCceEEEecCCccHHHHHHH
Confidence 356899999999997776665
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00029 Score=57.22 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---------------------------ccccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---------------------------FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+.+.+||.||+|.|..+..++.... +.+.+++++..|...-. ....++||
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCcc
Confidence 4567999999999999988873211 11223333333332111 11346899
Q ss_pred EEEEeeeeecc---CCC--CHHHHHH-HHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAV---SPK--KMPLILQ-NIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~---~~~--~~~~~l~-~~~~~Lk~gG~l~i~ 159 (231)
+|++-.. .-. +.. -...+++ .+++.|+|||++++.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998531 110 000 1346787 899999999998764
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00022 Score=60.19 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=46.2
Q ss_pred CCeEEEEcCCCCcchHHHhcCccc----------------------------cccceeeeeecCCcccccCCCCCCCeeE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEF----------------------------REERVNAFVCNVVNDDLSRNVNPSSVDV 124 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~----------------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ 124 (231)
+..|||||||+|.++...+..... -...++++..|...-.. .++.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----CCceeE
Confidence 578999999999987655411100 01244555555543222 358999
Q ss_pred EEEeeeeecc-CCCCHHHHHHHHHHhcCCCeEEE
Q 045799 125 VTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 125 ii~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
||+-.+ ..+ ..+-...+|..+.+.|||||..+
T Consensus 262 IVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 999442 222 22455678888899999999976
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00056 Score=57.15 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=71.7
Q ss_pred HHhhHHHHHHhccCCcccchhhhHHhhc---ccccCCCCCCCCCC-CeEEEEcCCCCcchHHHhcCcc------------
Q 045799 32 AKKYWDGFYKRHKNKFFKDRHYLEKDWG---NYFSDDSCCPNGNP-KVVLEVGCGAGNTIFPLVSHSE------------ 95 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~iLdvGcG~G~~~~~l~~~~~------------ 95 (231)
...||+.++.... .....|+.+.+. .++..+ .+. .++|.+|||...++..+-....
T Consensus 12 s~~~wd~rf~~rg---~~~~ewY~~~l~l~~~i~~~~-----~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~ 83 (482)
T KOG2352|consen 12 SVVYWDKRFQPRG---SDPFEWYGALLSLSGSIMKYL-----SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVV 83 (482)
T ss_pred cchhhhhhccccC---CChHHHHHHHHHHHHHHHHhh-----chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHH
Confidence 3468887653332 233446655542 122222 333 4999999999988877752110
Q ss_pred ---------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCH--------HHHHHHHHHhcCCCeEEEE
Q 045799 96 ---------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKM--------PLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 96 ---------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~--------~~~l~~~~~~Lk~gG~l~i 158 (231)
.....++....|.. ...|++++||+|+....++++-..+. ...+.++.++|++||+++.
T Consensus 84 V~~m~~~~~~~~~~~~~~~~d~~----~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 84 VAAMQVRNAKERPEMQMVEMDMD----QLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred HHHHHhccccCCcceEEEEecch----hccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 11112222222222 22678999999999999998732221 2457899999999999887
Q ss_pred Eec
Q 045799 159 CDY 161 (231)
Q Consensus 159 ~~~ 161 (231)
...
T Consensus 160 vtl 162 (482)
T KOG2352|consen 160 VTL 162 (482)
T ss_pred EEe
Confidence 765
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00028 Score=54.75 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CC-----CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NV-----NP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~-----~~ 119 (231)
.+.++|||||+++|.-+.+++.... ...+++.+|..+..... .+ ..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~---~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALP---EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 4568999999999999888873211 01133444443221110 00 12
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++||+|+.-.- .......+..+.++|+|||++++-+
T Consensus 155 ~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 155 GTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred CcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 68999988542 2456678888899999999988753
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0052 Score=45.17 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
-.+..|+|+|||||.++...+.... ..+.++|+.++.+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-----~~V~~vdiD~~a~ 81 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-----SRVLAVDIDPEAL 81 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-----cEEEEEecCHHHH
Confidence 4567899999999999987763321 1345555554443
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00076 Score=53.36 Aligned_cols=84 Identities=26% Similarity=0.336 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcccc---------------------------ccceeeeeecCCcccccCCCCCCCeeE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFR---------------------------EERVNAFVCNVVNDDLSRNVNPSSVDV 124 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~---------------------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ 124 (231)
..++||-||.|.|.+++.++.+...+ ..+++++..|.-+-. .. ..++||+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v--~~-~~~~fDv 152 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL--RD-CEEKFDV 152 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH--Hh-CCCcCCE
Confidence 33699999999999999999543211 122222222221100 01 2238999
Q ss_pred EEEeeeeeccCC---CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIFMLSAVSP---KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~~l~~~~~---~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|++-.+=. ..+ --...+++.++++|+++|+++.-
T Consensus 153 Ii~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99854322 111 01278999999999999999886
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00091 Score=46.64 Aligned_cols=80 Identities=11% Similarity=0.202 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCCCc-chHHHhcCccccccceeeeeecCCcccccC---------------C-CC-CCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGN-TIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------N-VN-PSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~-~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~-~~-~~~fD~ii~~~~l~ 132 (231)
.++.++||||||+|. ++..|+.. +..++++|+++..... + +. -+.+|+|.+.-
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir--- 85 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR--- 85 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC---
Confidence 345789999999996 77777633 4466777776554321 0 00 14678887744
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|+.+++..+.++++.+. .-+++...+.
T Consensus 86 --pp~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 86 --PPRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred --CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 66788888888887554 4477764444
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0036 Score=46.12 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=76.1
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCcc-------ccc-----------------------cceeeeeecCCcccccCCCC
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSE-------FRE-----------------------ERVNAFVCNVVNDDLSRNVN 118 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~-------~~~-----------------------~~~~~~~~D~~~~~~~~~~~ 118 (231)
..+++.+|+|+=.|.|.+++.+..-.. |.. .+.+.++-++. . -.+
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~----A-~~~ 119 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLV----A-LGA 119 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccc----c-cCC
Confidence 358899999999999999988871100 000 00111111110 0 114
Q ss_pred CCCeeEEEEeeeeec-----cCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEe
Q 045799 119 PSSVDVVTLIFMLSA-----VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFY 193 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~-----~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
.+..|+++....-|- +.......+...+++.|||||++.+.|+....-... .+.....+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~----------------~dt~~~~r 183 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL----------------SDTITLHR 183 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh----------------hhhhhhcc
Confidence 456677666332221 224567789999999999999999987655321110 00111235
Q ss_pred eCHHHHHHHHHHcCceEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+...++...+.+||.+.-...
T Consensus 184 i~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 184 IDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cChHHHHHHHHhhcceeeeeeh
Confidence 7888999999999999876543
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00036 Score=52.07 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-------------------ccceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-------------------EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-------------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
.++.+||+||-|-|.....+....... ...-+++.+.-.=++....+++++||-|+.-..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 778999999999998777765221110 0000111111111111225688999999986665
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++. ++...+.+.+.++|||+|++-...
T Consensus 180 e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 777 889999999999999999987653
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=53.48 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------------------cCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------SRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------~~~~~~~~fD~i 125 (231)
..+|..|||-=||||.++....-. ++.++++|+...|. ..+++++++|.|
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceE
Confidence 377889999999999988776511 23334444433332 225666789999
Q ss_pred EEeeee---eccCCCC----HHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFML---SAVSPKK----MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l---~~~~~~~----~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++---- .-..... ...+++.+.+.|++||++++..
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 982110 0011111 5688999999999999998863
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0034 Score=47.53 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCC-CC-eeEEEEee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNP-SS-VDVVTLIF 129 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~-~~-fD~ii~~~ 129 (231)
+.+++|||+|.|-.+..++ ..++ ..+++-+|....-.. ..+.. .. ||+|.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLA--I~~p--~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA--IAFP--DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHH--Hhcc--CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh
Confidence 6899999999999999988 1111 112222222211100 01121 23 99999977
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+ .....+..-+...+++||.+++.
T Consensus 144 v------a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 144 V------ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred c------cchHHHHHHHHHhcccCCcchhh
Confidence 5 45677888889999999988654
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0007 Score=50.92 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcc----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSE----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
++.++||+|||+|.++..+++... ....++.++..|+.... +...++||+|++.=
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l---~~~~~~fDlV~~DP 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL---AQPGTPHNVVFVDP 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH---hhcCCCceEEEECC
Confidence 467999999999999986542110 00012344444443211 11234699998743
Q ss_pred eeeccCCCCHHHHHHHHHHh--cCCCeEEEEEecc
Q 045799 130 MLSAVSPKKMPLILQNIKAV--LKPDGYILVCDYA 162 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~--Lk~gG~l~i~~~~ 162 (231)
-+. ..-...+++.+... |+|+|++++....
T Consensus 130 Py~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 130 PFR---KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC---CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 311 02233455555543 7889988887543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0022 Score=53.98 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc--------------ccccC--CCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN--------------DDLSR--NVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~--------------~~~~~--~~~~~~fD~ii~~~~l~~~ 134 (231)
..-..|+|...|.|.++..|....-+ .++++-.+-.. -+..+ +.-+++||+|.+..+|...
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~VW---VMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDPVW---VMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred cceeeeeeecccccHHHHHhccCCce---EEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh
Confidence 34467999999999999998743211 11111110000 00011 2235899999999998876
Q ss_pred C-CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 135 S-PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 135 ~-~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
. +-++..++-++-|+|+|+|.++|.|
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEec
Confidence 4 5577899999999999999999975
|
; GO: 0008168 methyltransferase activity |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0018 Score=48.43 Aligned_cols=95 Identities=19% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-------------ccceeeeeecCCcccccC----CCCCCCeeEEEEeee---
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-------------EERVNAFVCNVVNDDLSR----NVNPSSVDVVTLIFM--- 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-------------~~~~~~~~~D~~~~~~~~----~~~~~~fD~ii~~~~--- 130 (231)
.++..|+|+|+.+|.++..++....-. ..++..+..|+..+.... .+....+|+|++-..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~ 123 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNT 123 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCc
Confidence 778999999999999998776322110 112333333333322111 234456799997331
Q ss_pred -----eeccCCCC-HHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 131 -----LSAVSPKK-MPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 131 -----l~~~~~~~-~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.+|.--.. -..++.-+...|+|||.+++..+...+
T Consensus 124 ~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 124 SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 12220000 134556667899999999988655543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0057 Score=46.62 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++..+||+|+.||.++..++.... -.++++|+...++.- .+. +..|++++-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-----k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-----KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-----cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 7789999999999999998884421 145666666544321 111 256777775
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
-.| -....++..+..++++++.++..--+.-... ...+...=...... .+-.-...+.+.+++.||
T Consensus 152 vSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEag-------r~~v~kkGvv~d~~--~~~~v~~~i~~~~~~~g~ 217 (245)
T COG1189 152 VSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAG-------REQVGKKGVVRDPK--LHAEVLSKIENFAKELGF 217 (245)
T ss_pred eeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhh-------hhhcCcCceecCcc--hHHHHHHHHHHHHhhcCc
Confidence 543 2457799999999999998877521111111 11111110011110 011234678888889999
Q ss_pred eEEEEEEE
Q 045799 209 STVDINIH 216 (231)
Q Consensus 209 ~~~~~~~~ 216 (231)
.+..+...
T Consensus 218 ~~~gl~~S 225 (245)
T COG1189 218 QVKGLIKS 225 (245)
T ss_pred EEeeeEcc
Confidence 99887653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00053 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++..|||||||+|.++..++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHH
Confidence 5678999999999999999983
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00076 Score=52.53 Aligned_cols=86 Identities=26% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCC-C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPS-S 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~-~ 121 (231)
+++++||-||.|.|..+..++.+... . ++..+|+.+..++. .-..+ +
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~--~--~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPV--E--SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT---S--EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCc--c--eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 56899999999999999999844311 1 22233332222110 01233 8
Q ss_pred eeEEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
||+|+.-..-...+.. -...+++.+++.|+|||++++..
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9999984432211111 13689999999999999998864
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00045 Score=55.32 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=36.1
Q ss_pred CCCeeEEEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 119 PSSVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
...|++|+..+-|-+.. +......+..+..++.|||.++|.+.+.+.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 36788888877665553 334556899999999999999999876653
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00022 Score=50.70 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+||+|++..++-.- +-...+...|+++|+|.|..++..
T Consensus 100 eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred hhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEec
Confidence 34699999999987554 567788999999999999977753
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0017 Score=53.79 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCcchHHHhc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~ 92 (231)
++.+|||+|||+|.++..++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh
Confidence 457999999999999998883
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=50.49 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++.+|||||||+|.++..++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHH
Confidence 5678999999999999999983
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0011 Score=52.83 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=46.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-------------cc---------cccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-------------EF---------REERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-------------~~---------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
-+++.|||||||+|.++...+... .| -..++.++-..+. +++ ..++.|+||+-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiE--die---LPEk~DviISE 250 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIE--DIE---LPEKVDVIISE 250 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccc--ccc---CchhccEEEec
Confidence 457889999999998886655110 00 0123333333332 121 24689999984
Q ss_pred eeeecc-CCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 129 FMLSAV-SPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 129 ~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
-+ .++ -.+.....+-.+++.|+|.|..+-
T Consensus 251 PM-G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 251 PM-GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred cc-hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 32 222 113334444556799999999763
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.001 Score=54.98 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccce-eeeeecCCcccccC-----------------------------CCCCCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERV-NAFVCNVVNDDLSR-----------------------------NVNPSS 121 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~-~~~~~D~~~~~~~~-----------------------------~~~~~~ 121 (231)
++++||++=|=||.++.+.+.. +. +++.+|.++..+.- .-...+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 3899999999999999888733 22 56677777655421 113459
Q ss_pred eeEEEEe---------eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLI---------FMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~---------~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
||+|++- ..+.-. .+...++..+.++|+|||.++++.
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~--rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQ--RDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred ccEEEECCcccccCcccchhHH--HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999981 111112 456788999999999999999874
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0055 Score=45.24 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=54.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC-------cccc--------------ccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH-------SEFR--------------EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~-------~~~~--------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
..+++|||+|+|+|..+...+.. ..+. ...+.++..|+. ..+..||+++...
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~-------g~~~~~Dl~LagD 150 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLI-------GSPPAFDLLLAGD 150 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecccc-------CCCcceeEEEeec
Confidence 56899999999999888766611 0000 112222233332 2567899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA 167 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~ 167 (231)
++..= +.-.+++.-..++...|-.+++-++....+.
T Consensus 151 lfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 151 LFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred eecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCc
Confidence 86533 5566777755555556666666666665543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00067 Score=53.74 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.++.+|||||||+|.++..++... .+++++|+++.++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~------~~v~avE~d~~~~ 77 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA------AKVTAVEIDRDLA 77 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC------CcEEEEECCHHHH
Confidence 567899999999999999988431 1445555554443
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0028 Score=51.11 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CCC-CCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NVN-PSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~~-~~~fD~ii~~~~l~~~ 134 (231)
.++..+|||||++|.++..++.. +..++++|..+..... ..+ .+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 67899999999999999988855 4477888865432110 112 567899998443
Q ss_pred CCCCHHHHHHHHHHhcCCC
Q 045799 135 SPKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~g 153 (231)
+.+.++++.+.+.|..|
T Consensus 280 --e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 --EKPARVAELMAQWLVNG 296 (357)
T ss_pred --cCHHHHHHHHHHHHhcC
Confidence 67888999999999766
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0054 Score=43.77 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=34.2
Q ss_pred CCCC-CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 116 NVNP-SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 116 ~~~~-~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
++.. ..||++.....+++. . ....+.++.+.++|+|.+++.......
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~--~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 113 PFEDSASFDLVISLLVLHLL--P-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CCCCCCceeEEeeeeehhcC--C-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4444 489999444444444 2 888999999999999999988665543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0068 Score=45.26 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCcchHHHhc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.+.++||++||+|.++..+++
T Consensus 49 ~g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHh
Confidence 467999999999999998883
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=45.85 Aligned_cols=82 Identities=22% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcC---------------------ccc----cccceeeeeecCCcccccCCCCCCCee
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSH---------------------SEF----REERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~---------------------~~~----~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
...++..|||-|+|+|.++.+++.. .+| -...+.++.-|++..-+ ...+..+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF--~~ks~~aD 179 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF--LIKSLKAD 179 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--cccccccc
Confidence 3588999999999999999998811 111 13456677778876654 33467889
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.|++ .+ ..+-.++-.++.+||.+|.-+++
T Consensus 180 aVFL-----Dl--PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 180 AVFL-----DL--PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred eEEE-----cC--CChhhhhhhhHHHhhhcCceEEe
Confidence 8887 33 45666777888899988764443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0048 Score=52.50 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=53.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc------------------------ccccceeeeeecCCcccccCCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE------------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~i 125 (231)
..++.+|||+++|+|.-+.+++.... +.-.++.++..|.... . ....+.||.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~--~-~~~~~~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF--G-AALPETFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh--h-hhchhhcCeE
Confidence 46889999999999999988872210 0011222233333211 0 1123579999
Q ss_pred EE----ee--eeeccC-------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 126 TL----IF--MLSAVS-------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 126 i~----~~--~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++ +. ++..-| ++ -...+|..+.+.|||||.++-++-+.
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 95 22 232211 00 11678899999999999997665443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0086 Score=48.38 Aligned_cols=104 Identities=12% Similarity=0.158 Sum_probs=56.8
Q ss_pred chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCc---cccccceeeeeecCCcccccC-----------
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHS---EFREERVNAFVCNVVNDDLSR----------- 115 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~---~~~~~~~~~~~~D~~~~~~~~----------- 115 (231)
.+..+...+..++. ..++.+|||-+||+|.+...+.... .......++.+.|+.......
T Consensus 30 TP~~i~~l~~~~~~------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 30 TPREIVDLMVKLLN------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp --HHHHHHHHHHHT------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHhhhh------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 55566666655552 3566789999999999987775210 111123455566654433210
Q ss_pred ---------------CCC-CCCeeEEEEeeeeecc-------CC------------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 ---------------NVN-PSSVDVVTLIFMLSAV-------SP------------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ---------------~~~-~~~fD~ii~~~~l~~~-------~~------------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
... ..+||+|+++=-+... .. ..--.++..+.+.|++||.+.+.
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 111 4689999995432211 00 01125889999999999997665
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0052 Score=48.29 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCCcchHHHhcC------------------------ccccccceeeeeecCCcccccC-----CCCCCCee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSH------------------------SEFREERVNAFVCNVVNDDLSR-----NVNPSSVD 123 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~------------------------~~~~~~~~~~~~~D~~~~~~~~-----~~~~~~fD 123 (231)
...|+.+|||--.-...+... ......+...+.+|+. ..+.. .+..+.--
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCCe
Confidence 357999999976555444300 0011335566777776 43322 23334567
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-hhhccccccccceEEeCCCeEEEeeCHHHHHHH
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTL 202 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (231)
++++-.++.++++++...+++.+.+...||+.+++......+.... ............ ..... ....++..++.++
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~ 237 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARG--VDGSG-LVFGIDRADVAEW 237 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhc--ccccc-cccCCChhhHHHH
Confidence 8888899999998899999999999888888887754433111100 000000000000 00111 1234788999999
Q ss_pred HHHcCceEEEE
Q 045799 203 FLEAGFSTVDI 213 (231)
Q Consensus 203 l~~~Gf~~~~~ 213 (231)
|.+.||++.+.
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998775
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.00067 Score=45.19 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=31.2
Q ss_pred CeeEEEEeeeeec--cC--CCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 121 SVDVVTLIFMLSA--VS--PKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 121 ~fD~ii~~~~l~~--~~--~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+||+|+|..|.-+ +. ++-...++++++++|+|||++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 5899999887543 32 567789999999999999999886
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.02 Score=47.17 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=57.6
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------C-CCCCCe
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------N-VNPSSV 122 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~-~~~~~f 122 (231)
...++.+|||++++.|.=+.+++.... +.+..++..|++..-+.. . ...++|
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~--~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELME--NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcC--CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 467889999999999999988883321 112233455554322110 1 112359
Q ss_pred eEEEE------eeeeeccC-------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 123 DVVTL------IFMLSAVS-------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 123 D~ii~------~~~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|.|++ .+++.--| ++ -...+|..+.++|||||.++-++-+.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 99998 23342111 11 13578889999999999998875444
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0063 Score=50.53 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCC-CCCeeEEEEee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVN-PSSVDVVTLIF 129 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~-~~~fD~ii~~~ 129 (231)
+.+|||++||+|..+..++.... ...++.+|+++..+.. .+. .++||+|++.=
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~----~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG----VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 46899999999999999873322 1133444444322210 011 35799888731
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+-....++..+.+.+++||+++++
T Consensus 134 ------~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 ------FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 234567888877889999999997
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0026 Score=50.92 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++..|||||||+|.++..++.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~ 56 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQ 56 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHH
Confidence 5678999999999999998873
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.023 Score=44.02 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=31.3
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|+|+++.++.+- +.+..++..++..|..+|.+++..
T Consensus 163 ~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 163 FDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred ccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEE
Confidence 9999999998776 788889999999998888666653
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.029 Score=42.43 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=25.5
Q ss_pred EEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 76 iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
|.||||--|.+..+|+.... .-.++.+|+.+..+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----~~~~ia~DI~~gpL~ 35 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----APKAIAVDINPGPLE 35 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----EEEEEEEESSHHHHH
T ss_pred CceeccchhHHHHHHHhcCC----CCEEEEEeCCHHHHH
Confidence 68999999999999986543 225677888876654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.012 Score=42.07 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred CCCeeEEEEeeeeeccC---------CCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 119 PSSVDVVTLIFMLSAVS---------PKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~---------~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
.++||.+.+..+++|+. +.--...+.++.++||+||.+++..+..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 46899999999999972 1222467788999999999999975444
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.017 Score=43.77 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=50.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc---------c-------------cccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE---------F-------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~---------~-------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
..++.+||-+|.++|....++..-.. + .+.++--+..|...+..-..+ -+..|+|++
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~l-v~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRML-VEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTT-S--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcc-cccccEEEe
Confidence 47899999999999999999871110 0 122333344455433322222 248999988
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
--. -+++.+-++.++...||+||.++++
T Consensus 150 DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 150 DVA----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp E-S----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 331 1355566677888899999999886
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.011 Score=43.31 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=50.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeec-----------------CCccccc----CCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCN-----------------VVNDDLS----RNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D-----------------~~~~~~~----~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+||.+|.++.-...... .+-.+.++| +...... ..+++...|+|++-.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~---p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVN---PNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhC---CCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 7799999999999999865442211 111233333 3322211 134778899998843
Q ss_pred eeecc--CCCCHHH-------HHHHHHHhcCCCeEEEEEeccCCc
Q 045799 130 MLSAV--SPKKMPL-------ILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 130 ~l~~~--~~~~~~~-------~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.-..- ...|-.. ++.-....++|+|.+++-.+...+
T Consensus 145 apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 145 APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 21100 0012222 233334566799998887655543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0063 Score=48.30 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------------C-CCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------N-VNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~-~~~~~f 122 (231)
.++++|||+=|=||.++.+.+... ..+++.+|.|...++. . -..++|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-----A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-----AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-----ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCC
Confidence 347899999999999998776221 1133445544433321 0 024689
Q ss_pred eEEEEe---eeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLI---FMLSAVS-PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~---~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+||+- +.=.... ..+...++..+.++|+|||.++++.
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 999981 1100000 1356678899999999999987763
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0028 Score=47.03 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcc----------------------cc-ccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSE----------------------FR-EERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~----------------------~~-~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
.+.++||+=||+|.++...++... .. ...+.++..|.............+||+|++-
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 478999999999999998873211 00 0123344444332211111146899999883
Q ss_pred eeeeccCCCC-HHHHHHHHH--HhcCCCeEEEEEeccC
Q 045799 129 FMLSAVSPKK-MPLILQNIK--AVLKPDGYILVCDYAI 163 (231)
Q Consensus 129 ~~l~~~~~~~-~~~~l~~~~--~~Lk~gG~l~i~~~~~ 163 (231)
=- +- ... ...++..+. .+|+++|.+++.....
T Consensus 122 PP--Y~-~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 122 PP--YA-KGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -S--TT-SCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CC--cc-cchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 21 11 022 366777777 7889999988864333
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0042 Score=46.91 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=42.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc--------------------------------ccccceeeeeecCCcccccCCC
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE--------------------------------FREERVNAFVCNVVNDDLSRNV 117 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~--------------------------------~~~~~~~~~~~D~~~~~~~~~~ 117 (231)
..++...+|||||.|......+.... .....+.....|+........+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 36788999999999998877761100 0112233334444322211000
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
-...|+|++++. .++ ++....+.+....||+|.+++..
T Consensus 120 -~s~AdvVf~Nn~--~F~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 -WSDADVVFVNNT--CFD-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -GHC-SEEEE--T--TT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred -hcCCCEEEEecc--ccC-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 024589999875 233 45666678888889998887654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.035 Score=42.17 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.2
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+.+.||+++.- |.. ++....+.++.+++|+||++++-.
T Consensus 146 ~~~tfDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEec
Confidence 56899999873 332 344578899999999999998864
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.022 Score=49.50 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=17.7
Q ss_pred CCCeEEEEcCCCCcchHHHh
Q 045799 72 NPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~ 91 (231)
...+|||.|||+|.++..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~ 50 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALL 50 (524)
T ss_pred cceEEEeCCCCccHHHHHHH
Confidence 45689999999999998887
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.027 Score=43.93 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=35.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc------------------c-cccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE------------------F-REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~------------------~-~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
.++..|||||+|.|.++..|+.... + ...+++++..|+.+-++..-. .++.|+++-
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~---~~~~vVaNl 103 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA---QPYKVVANL 103 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc---CCCEEEEcC
Confidence 4578999999999999999993311 1 124556666777655442111 456666643
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.23 Score=37.12 Aligned_cols=83 Identities=20% Similarity=0.339 Sum_probs=54.2
Q ss_pred CCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------C------C------CCCCee
Q 045799 68 CPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------N------V------NPSSVD 123 (231)
Q Consensus 68 ~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------~------~------~~~~fD 123 (231)
.+..++.+||-+|..+|....++..-.. .+ .+.++.++..+... | . --++.|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~---~G-~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG---EG-RIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccC---CC-cEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhccccc
Confidence 4468899999999999999999873322 11 23455555443321 1 1 124577
Q ss_pred EEEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+|+. .+. +++.+=+..++...||+||.++++
T Consensus 148 viy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 148 VIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEEE-----ecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 7776 343 455566677889999999987775
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.013 Score=44.05 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CC-CCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NV-NPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~-~~~~fD~ii~ 127 (231)
.++..|||+-||-|.++..++.... ...++++|+.+..... .+ +...||-|++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~----~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGK----AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-----SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcC----ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEE
Confidence 7789999999999999999984111 1234444444332210 11 2678898888
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEE
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYI 156 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l 156 (231)
.. | .....++..+.+++++||.+
T Consensus 176 ~l-----p-~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 176 NL-----P-ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp -------T-SSGGGGHHHHHHHEEEEEEE
T ss_pred CC-----h-HHHHHHHHHHHHHhcCCcEE
Confidence 54 2 33445888899999999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.021 Score=44.51 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.3
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhc
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
+..++..|||||.|||.++..|+.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe 78 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLE 78 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHH
Confidence 357889999999999999999983
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.03 Score=43.20 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=40.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
++..+|+|||||.-.++..++.... +..+.+.|+.....+. ..+....|+.++.=
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~----~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK 179 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAP----GATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLK 179 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSST----T-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET
T ss_pred CCCchhhhhhccCCceehhhcccCC----CcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHH
Confidence 6689999999999988888874422 4467778877665432 22557899999999
Q ss_pred eeecc
Q 045799 130 MLSAV 134 (231)
Q Consensus 130 ~l~~~ 134 (231)
+++++
T Consensus 180 ~lp~l 184 (251)
T PF07091_consen 180 TLPCL 184 (251)
T ss_dssp -HHHH
T ss_pred HHHHH
Confidence 99888
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.013 Score=45.91 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-------cccccceeeeeecCCcccccC-----------CC-----------CCC-
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-------EFREERVNAFVCNVVNDDLSR-----------NV-----------NPS- 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-------~~~~~~~~~~~~D~~~~~~~~-----------~~-----------~~~- 120 (231)
..+++|||+|||.|........+. .+....+..+..+....+... ++ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 578999999999998887765322 111122222222221111100 00 112
Q ss_pred -CeeEEEEeeeeeccCCCCHHHH-HHHHHHhcCCCeEEEEE
Q 045799 121 -SVDVVTLIFMLSAVSPKKMPLI-LQNIKAVLKPDGYILVC 159 (231)
Q Consensus 121 -~fD~ii~~~~l~~~~~~~~~~~-l~~~~~~Lk~gG~l~i~ 159 (231)
+||+|.++.++-.. +..+.+ ......+++++|+++++
T Consensus 195 ~~ydlIlsSetiy~~--~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSI--DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCc--chhhhhHhhhhhhcCCccchhhhh
Confidence 77888777776554 444444 55666777889988775
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.098 Score=40.28 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCCeEEEE
Q 045799 139 MPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i 158 (231)
...++.+++|+|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 45788999999999998876
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.097 Score=39.40 Aligned_cols=94 Identities=18% Similarity=0.314 Sum_probs=45.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecC--------------------------CcccccCCC----CCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNV--------------------------VNDDLSRNV----NPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~--------------------------~~~~~~~~~----~~~ 120 (231)
.++..|+|+|.-.|+-+..++.....-....+++++|+ +........ ...
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 34689999999999888777622111111234444544 322211111 112
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA 167 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~ 167 (231)
+..+|+.-. -|.- +...+.|+....++++|+++++.|.......
T Consensus 111 ~~vlVilDs-~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~ 154 (206)
T PF04989_consen 111 HPVLVILDS-SHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIEDWP 154 (206)
T ss_dssp SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHH
T ss_pred CceEEEECC-CccH--HHHHHHHHHhCccCCCCCEEEEEeccccccc
Confidence 334444422 2222 5567788889999999999999876554433
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.013 Score=41.13 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
-.+++++|+|||.|.++...... . .-.++++|+.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~---~--~e~vlGfDIdpeAL 84 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMP---K--NESVLGFDIDPEAL 84 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcC---C--CceEEeeecCHHHH
Confidence 45789999999999888554311 1 11345666655444
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.0081 Score=40.19 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=28.6
Q ss_pred EEEcCCCCcchHHHhcCccccccceeeeeecCCcc--ccc-----------------------CCCCCCCeeEEEEeeee
Q 045799 77 LEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND--DLS-----------------------RNVNPSSVDVVTLIFML 131 (231)
Q Consensus 77 LdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~--~~~-----------------------~~~~~~~fD~ii~~~~l 131 (231)
||||+..|..+..++....-.. ..+++++|..+. ... ..++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 6888888887777763221111 123455555441 000 0122467888887552
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|.. +.....+..+...|+|||++++-|
T Consensus 79 H~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 112 345567788888999999998764
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.024 Score=41.98 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccc-----cceeeeeecCCcccccC------------------------CCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFRE-----ERVNAFVCNVVNDDLSR------------------------NVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~-----~~~~~~~~D~~~~~~~~------------------------~~~~~~ 121 (231)
.++..+||--||+|.+....+....... ....+++.|+...++.. ++.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 5678999999999998877652111000 12235677776655421 335678
Q ss_pred eeEEEEeeeeecc-C-C----CCHHHHHHHHHHhcCCCeEEEE
Q 045799 122 VDVVTLIFMLSAV-S-P----KKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 122 fD~ii~~~~l~~~-~-~----~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
+|.|++.--...- . . +-...+++++.++|++..++++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999995533321 1 0 1124667888888888444433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.03 Score=42.53 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCCcchHHHhcCccc----c-ccceeeeeecCCcc----------------ccc----CCCCCCCeeEEEE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEF----R-EERVNAFVCNVVND----------------DLS----RNVNPSSVDVVTL 127 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~----~-~~~~~~~~~D~~~~----------------~~~----~~~~~~~fD~ii~ 127 (231)
-.+++|+...+|.++..|..+... . ...-..+.+|+.+. .-. .-|..++.|+|+|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc 121 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC 121 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEe
Confidence 478999999999999777621100 0 00002445555421 111 1346679999999
Q ss_pred ee-----eeeccCCCCH------HHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IF-----MLSAVSPKKM------PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~-----~l~~~~~~~~------~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
-. .+|.+ ++. .+.|.-...+|+|||.|+.--
T Consensus 122 DGAPDvTGlHd~--DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 122 DGAPDVTGLHDL--DEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred CCCCCccccccH--HHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 54 46655 332 345566678899999997643
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.35 Score=39.62 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------------CCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------------NVNP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------------~~~~ 119 (231)
+...++|-+|.|.|.-++.++..... .++..+|+.+.|++. .-..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~----~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQV----EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCc----ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc
Confidence 44568999999999999888743221 144555555555432 1123
Q ss_pred CCeeEEEEeeeeeccCCCC-------HHHHHHHHHHhcCCCeEEEEEe
Q 045799 120 SSVDVVTLIFMLSAVSPKK-------MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~-------~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+.||.||.-.- +|.. -..+...+++.|+++|.+++..
T Consensus 364 ~~fD~vIVDl~----DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 364 DMFDVVIVDLP----DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccccEEEEeCC----CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 57898887331 1111 2467888999999999998863
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.19 Score=40.35 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=69.4
Q ss_pred ceeeeeecCCcccccCC-----CCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh-c
Q 045799 100 RVNAFVCNVVNDDLSRN-----VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL-D 173 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~~-----~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~-~ 173 (231)
....+.+|+...++... +..+.--++++-+++.+++++...+++..|...+.||..++.......... .... .
T Consensus 144 ~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~-~~~~~~ 222 (297)
T COG3315 144 HRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLR-DRLRRP 222 (297)
T ss_pred eEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHH-hcccch
Confidence 56777888876665443 335667789999999999999999999999999988877766532111110 0000 0
Q ss_pred cccccccceEEeCCCeE-EEeeCHHHHHHHHHHcCceEEEE
Q 045799 174 RNQMIGDSFYVRGDGTC-SFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
........ .....+.. ....+..++...+.+.||.....
T Consensus 223 ~~~~~~~~-~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 223 AARKTMRG-EDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhhhhccc-cccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 00000000 00111212 22356899999999999987765
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.027 Score=39.93 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.+...|+|+|||.|.++..|+....-...+.+++++|..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~ 66 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV 66 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH
Confidence 6678999999999999998885100001356778888876543
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.18 Score=37.76 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=17.9
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+.-.+.|||||-|.+...|+
T Consensus 59 ~~kvefaDIGCGyGGLlv~Ls 79 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLA 79 (249)
T ss_pred cccceEEeeccCccchhhhcc
Confidence 345679999999999998887
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.18 Score=34.87 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=41.2
Q ss_pred CCeeEEEEeeeeeccCCCCH----HHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeC
Q 045799 120 SSVDVVTLIFMLSAVSPKKM----PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFS 195 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~----~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
..+|+|+.-.. -|..++ ..+++.+++++++||.+... -.
T Consensus 49 ~~~Da~ylDgF---sP~~nPelWs~e~~~~l~~~~~~~~~l~Ty----------------------------------s~ 91 (124)
T PF05430_consen 49 ARFDAWYLDGF---SPAKNPELWSEELFKKLARLSKPGGTLATY----------------------------------SS 91 (124)
T ss_dssp T-EEEEEE-SS----TTTSGGGSSHHHHHHHHHHEEEEEEEEES------------------------------------
T ss_pred ccCCEEEecCC---CCcCCcccCCHHHHHHHHHHhCCCcEEEEe----------------------------------ec
Confidence 57888887542 122333 57999999999999988553 12
Q ss_pred HHHHHHHHHHcCceEEEEEEE
Q 045799 196 EDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
...+++.|.++||.+.+....
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-S
T ss_pred hHHHHHHHHHcCCEEEEcCCC
Confidence 246899999999999886654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.045 Score=36.42 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.+...-+|||||+|.+..-|. .. +....++|+...-.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~-~E-----Gy~G~GiD~R~Rk~ 93 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILN-SE-----GYPGWGIDARRRKS 93 (112)
T ss_pred CCCCceEEccCCchHHHHHHH-hC-----CCCccccccccccc
Confidence 345678999999998775554 33 33455777765443
|
; GO: 0008168 methyltransferase activity |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.045 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.++||++||+|.++..++.... .++++|.+..++.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~------~v~~vE~~~~av~ 233 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR------RVLATEIAKPSVN 233 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC------EEEEEECCHHHHH
Confidence 4799999999999998874421 5778888877764
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.24 Score=41.18 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEEEe
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii~~ 128 (231)
+.+|||+-||+|..+..++..... .-.++..|+++..... .....+||+|..-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~g---a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEG---VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 368999999999999998854210 0134455554433211 0012578988762
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
= + ..+..++..+.+.++++|++.+.
T Consensus 122 P-f-----Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 P-F-----GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-C-----CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 2 34457999999999999999986
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.13 Score=42.73 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=43.6
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
..+++++|.++....+.++++++....++++.+.++|||+++.......
T Consensus 290 ~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 290 RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 3468999999999999999989999999999999999999999865543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.9 Score=37.23 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeccCCchhhhh-hhcc-------ccccccceE-EeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 139 MPLILQNIKAVLKPDGYILVCDYAIGDFAQVK-LLDR-------NQMIGDSFY-VRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 139 ~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~-~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
...+++.+...|+- |++++.|++.+.....+ .... .+....+++ ..+..-.....+...+..+.+++|++
T Consensus 221 ~~~~l~~ia~~L~~-G~~l~iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~g~~ 299 (370)
T COG1565 221 REALLKAIAERLER-GVFLFIDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAAGLE 299 (370)
T ss_pred HHHHHHHHHHHHhh-CeEEEEecCCcccccccccccCccHHHHHHhhccCChhhccCccceeeeecHHHHHHHHHHcCCc
Confidence 35889999999988 88888888775332210 0000 011111111 12222233457888999999999999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
+..+..
T Consensus 300 ~~~~~t 305 (370)
T COG1565 300 VLGFKT 305 (370)
T ss_pred ccchhh
Confidence 876543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.095 Score=41.93 Aligned_cols=42 Identities=7% Similarity=0.091 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~ 115 (231)
.++..+||++||.|.++..++... .....++++|..+.++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~---~~~g~VigiD~D~~al~~ 59 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERL---GPKGRLIAIDRDPDAIAA 59 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhC---CCCCEEEEEcCCHHHHHH
Confidence 567899999999999999998542 112468899999887643
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.39 Score=43.17 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.9
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+.-+|+|+|-|+|.+....+
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~ 76 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATW 76 (662)
T ss_pred CCcEEEEecCcchHHHHHHHH
Confidence 445799999999999776665
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.27 Score=36.40 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-----------------------ccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-----------------------EERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-----------------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
-.+.++||+=+|+|.++...++..... ...++++..|.. ..+...-..++||+|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~-~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL-RALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH-HHHHhcCCCCcccEEEe
Confidence 457899999999999999888331100 123334444444 11111112235999998
Q ss_pred eeeeeccCCCCHHHHHHH--HHHhcCCCeEEEEEe
Q 045799 128 IFMLSAVSPKKMPLILQN--IKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~--~~~~Lk~gG~l~i~~ 160 (231)
-=-++ ...-+....+.. -...|+|+|.+++..
T Consensus 121 DPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 121 DPPYA-KGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 33222 100111222222 346799999998864
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.084 Score=43.69 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=27.5
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.++||++||+|.++..++.... .++++|.++.++.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~------~v~~vE~~~~ai~ 242 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR------RVLATEISKPSVA 242 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC------EEEEEECCHHHHH
Confidence 5799999999999998774421 5678888877764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.65 Score=33.89 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=56.6
Q ss_pred eeecCCcccccCCCCCCCeeEEEEeeeeeccC------C-------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh
Q 045799 104 FVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVS------P-------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK 170 (231)
Q Consensus 104 ~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~------~-------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~ 170 (231)
.++|.....-......+.||.|+.++ .|+. . +=+..+++.+..+|+++|.+.|.-.....
T Consensus 58 ~~VDat~l~~~~~~~~~~FDrIiFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p----- 130 (166)
T PF10354_consen 58 HGVDATKLHKHFRLKNQRFDRIIFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP----- 130 (166)
T ss_pred cCCCCCcccccccccCCcCCEEEEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-----
Confidence 35566544333344678999999977 3443 0 11257888999999999999886211111
Q ss_pred hhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeeee
Q 045799 171 LLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ 221 (231)
|+.=.+.++.+++||.+++...+.+...
T Consensus 131 -----------------------y~~W~i~~lA~~~gl~l~~~~~F~~~~y 158 (166)
T PF10354_consen 131 -----------------------YDSWNIEELAAEAGLVLVRKVPFDPSDY 158 (166)
T ss_pred -----------------------CccccHHHHHHhcCCEEEEEecCCHHHC
Confidence 1222566788889999988776655443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.14 Score=43.59 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.+.+..+||+.||||..+..++.... .++++.++++...
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~------~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK------RVIGVEISPDAVE 419 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc------ceeeeecChhhcc
Confidence 36678999999999999988875533 5677777766553
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.44 Score=36.85 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCCC-CCeeE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVNP-SSVDV 124 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~~-~~fD~ 124 (231)
.+..++|+|+|+..-++.|+......+.-..++-+|++..-+.. .++. ++==.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 36789999999999888877322222223455666666433321 1122 22234
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++...++..+++++...++..+...|+||-++++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 44455788898899999999999999999999874
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.084 Score=38.27 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=16.0
Q ss_pred eEEEEcCCCCcchHHHhcC
Q 045799 75 VVLEVGCGAGNTIFPLVSH 93 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~ 93 (231)
.|+|+.||.|.++.+++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999999943
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.80 E-value=1.6 Score=37.02 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.++.++||+=||.|.++..|+.. ..++.+++++++++.
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~ 329 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVE 329 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHH
Confidence 45689999999999999999844 236677777776654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.46 Score=37.65 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVT 126 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii 126 (231)
.+.+|+=||||+=.++..+++..... +..+.++|..+..... ...-..||+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~--~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGP--GARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT----EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEE
Confidence 34699999999888776666322111 2233344433222110 11225899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
....... +.++...++..+.+.++||..+++.
T Consensus 198 lAalVg~-~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 198 LAALVGM-DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp E-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred Ehhhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 8775542 2357889999999999999999886
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.54 Score=37.37 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=56.3
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcC---------------------------ccccccceeeeeecCCcccccCCCCCCC
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSH---------------------------SEFREERVNAFVCNVVNDDLSRNVNPSS 121 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~---------------------------~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 121 (231)
...+.+++|=||.|.|...+....+ ..|+..++...++|-..-. ...+.++
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl--~~~~~~~ 195 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL--EDLKENP 195 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH--HHhccCC
Confidence 3467789999999999998877633 2244444444444432111 1234689
Q ss_pred eeEEEEeeeeeccC--CCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 122 VDVVTLIFMLSAVS--PKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 122 fD~ii~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
||+|+.-..=--.| .--.+.+++.+.+.||++|+++..
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99998743211111 012356788899999999999875
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.27 Score=41.38 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=31.2
Q ss_pred CCeeEEEEeeeeeccC-CCCHHHHHHH-HHHhcCCCeEEEEEeccCC
Q 045799 120 SSVDVVTLIFMLSAVS-PKKMPLILQN-IKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~-~~~~~~~l~~-~~~~Lk~gG~l~i~~~~~~ 164 (231)
+.||+|++.+.++++. ........+. ..+..++|+.+++.+.+..
T Consensus 273 ~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 273 NGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred cceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 5699999999999985 2233334444 4456688999988765443
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.7 Score=30.24 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=50.2
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+|-|.|.++..+++..+....+ |.+++. +.+.......+ ..+++-+-.......-....++++.+.+.++|
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~ifT-fAP~T~~L~~m----~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g 74 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIFT-FAPRTPLLALM----HAIGKLFPRPDRSPRIYPHREEDLRRALAAAG 74 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEEE-ECCCCHHHHHH----HHHhccCCCCCCCCcEEEeCHHHHHHHHHhCC
Confidence 346667887888899999887554 556554 33332221111 12222221112222334578999999999999
Q ss_pred ceEEEEEEEee
Q 045799 208 FSTVDINIHLK 218 (231)
Q Consensus 208 f~~~~~~~~~~ 218 (231)
|++.....+..
T Consensus 75 ~~~~r~~ris~ 85 (97)
T PF07109_consen 75 WRIGRTERISS 85 (97)
T ss_pred CeeeecccccC
Confidence 99988765543
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.16 Score=35.76 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 75 VVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.+||||||.|..+..++.... ..+++.+|..+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----~~~v~~~E~~~~~~ 35 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----EGRVIAFEPLPDAY 35 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----CCEEEEEecCHHHH
Confidence 479999999999988874321 23567777776554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.52 E-value=3.2 Score=34.00 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
..|..|||.=+|-|.++..++.... ..++.+|+.+..+.. ....+.+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-----~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-----PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-----ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE
Confidence 5699999999999999999884422 125566665544321 11126788888
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
+... .....++..+.+++++||.+-..++...+
T Consensus 262 m~~p------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 262 MGLP------KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred eCCC------CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 8553 34566888889999999999887655544
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.31 Score=36.02 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCCcchHHHhcCc-------------cccc--------cceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHS-------------EFRE--------ERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~-------------~~~~--------~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
.....|+|+|+|.++...+..+ .+.. .++.++..|.+..++ +..|+|+|-..=
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f------e~ADvvicEmlD 106 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF------ENADVVICEMLD 106 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc------cccceeHHHHhh
Confidence 3678999999998886554111 1111 133344445443322 356888884432
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
..+-.+....++..+.+.||-++.++-
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 222236778899999999999988864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.55 Score=42.54 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.0
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.++..++|..||+|.+.+..+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa 209 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAA 209 (702)
T ss_pred CCCCeEEccCCCccHHHHHHH
Confidence 356899999999999988776
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.7 Score=30.64 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=29.9
Q ss_pred CCCCCeeEEEEeeeeeccCCCC---------HHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 117 VNPSSVDVVTLIFMLSAVSPKK---------MPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 117 ~~~~~fD~ii~~~~l~~~~~~~---------~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
++.+++|+++.+. .++|-.| ....++.+.++|+|||++.+..+...+
T Consensus 42 i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 42 IPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp --S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred CccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 3445899988765 5666333 357788999999999999998766544
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.51 Score=37.09 Aligned_cols=148 Identities=14% Similarity=0.231 Sum_probs=71.8
Q ss_pred chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCC--cchHHHh-------------------cCc-----cccccceee
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG--NTIFPLV-------------------SHS-----EFREERVNA 103 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G--~~~~~l~-------------------~~~-----~~~~~~~~~ 103 (231)
++.|+.+.+..+... .--...||||||-- .+...++ ++. .-......+
T Consensus 52 nR~Fl~RaVr~la~~------~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~ 125 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEE------AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAY 125 (267)
T ss_dssp HHHHHHHHHHHHHCT------T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEE
T ss_pred HHHHHHHHHHHHHHh------cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEE
Confidence 445666665555531 13467999999843 3455554 000 001112456
Q ss_pred eeecCCcccccC------C-CCCCCeeEEEEeeeeeccCC-CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccc
Q 045799 104 FVCNVVNDDLSR------N-VNPSSVDVVTLIFMLSAVSP-KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN 175 (231)
Q Consensus 104 ~~~D~~~~~~~~------~-~~~~~fD~ii~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~ 175 (231)
+..|+....--. . +--..-=.+++..++||+++ +++..+++.+.+.|.||.+|+++.......... ..
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~-~~--- 201 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER-AE--- 201 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH-HH---
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH-HH---
Confidence 677766433211 1 11134457888899999985 899999999999999999999987655422111 00
Q ss_pred cccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEE
Q 045799 176 QMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212 (231)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 212 (231)
.+.. .+ ...+....+.+.+++..+|. ||++++
T Consensus 202 -~~~~-~~-~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 202 -ALEA-VY-AQAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp -HHHH-HH-HHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred -HHHH-HH-HcCCCCceecCHHHHHHHcC--CCccCC
Confidence 0000 00 01122234568899999985 898876
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.2 Score=32.46 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CC-CCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NV-NPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~-~~~~fD~ii 126 (231)
+.+.++.||||--+.+..+|..+.. .-.++.+|+.+..+.. ++ ++..+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~----~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP----ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC----cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEE
Confidence 5566799999999999999984432 1134455555544421 12 223566666
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..++=... ...++.+-.+.|+.=-.+++. +.....+++++|.+.
T Consensus 91 IAGMGG~l----I~~ILee~~~~l~~~~rlILQ--------------------------------Pn~~~~~LR~~L~~~ 134 (226)
T COG2384 91 IAGMGGTL----IREILEEGKEKLKGVERLILQ--------------------------------PNIHTYELREWLSAN 134 (226)
T ss_pred EeCCcHHH----HHHHHHHhhhhhcCcceEEEC--------------------------------CCCCHHHHHHHHHhC
Confidence 65532221 344555555555432233332 112456888888888
Q ss_pred CceEEEE
Q 045799 207 GFSTVDI 213 (231)
Q Consensus 207 Gf~~~~~ 213 (231)
+|+++..
T Consensus 135 ~~~I~~E 141 (226)
T COG2384 135 SYEIKAE 141 (226)
T ss_pred Cceeeee
Confidence 8887764
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.84 Score=38.09 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=20.6
Q ss_pred CCCCCCeEEEEcCCCCcchHHHh
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
++.++.+|||.++.+|.=+.+++
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IA 260 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIA 260 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHH
Confidence 56789999999999999888887
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.32 Score=38.83 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=37.0
Q ss_pred ceeeeeecCCcccccCCCCCCCeeEEEEe--eee--eccCC----------CCHHHHHHHHHHhcCCCeEEEEE
Q 045799 100 RVNAFVCNVVNDDLSRNVNPSSVDVVTLI--FML--SAVSP----------KKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~~~~~~~~fD~ii~~--~~l--~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
...++..|....+ ..+++++||+|++. +.+ .+-.. +-+..++.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l--~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTEL--KKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHH--HhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3355667776433 24567889999982 211 00000 11257889999999999999875
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.33 Score=38.75 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ 124 (231)
..++..|||++++.|.-+.+++.... + .-.++..|++..-+.. ......||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~--~-~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMG--N-KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTT--T-TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccCCCCceeeeeeccc--c-hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 46788999999999999988872211 0 1123334443322110 112346999
Q ss_pred EEEee------eeeccC-------CCC-------HHHHHHHHHHhc----CCCeEEEEEec
Q 045799 125 VTLIF------MLSAVS-------PKK-------MPLILQNIKAVL----KPDGYILVCDY 161 (231)
Q Consensus 125 ii~~~------~l~~~~-------~~~-------~~~~l~~~~~~L----k~gG~l~i~~~ 161 (231)
|++-. ++..-| +++ ...+|..+.+.+ ||||+++-++-
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 99832 222111 111 247888999999 99999987653
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.43 Score=37.58 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc------------------cc-cccceeeeeecCCcccccCCCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS------------------EF-REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~------------------~~-~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l 131 (231)
.++..|||||+|+|.++..|+... .+ ...+++++..|+..-.....+ .+....|+++-..
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~-~~~~~~vv~NlPy 107 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL-KNQPLLVVGNLPY 107 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC-SSSEEEEEEEETG
T ss_pred CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh-cCCceEEEEEecc
Confidence 468899999999999999998221 11 234566677776643332111 1233455543221
Q ss_pred eccCCCCHHHHHHHHHHhcCC
Q 045799 132 SAVSPKKMPLILQNIKAVLKP 152 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~ 152 (231)
.--..++.++...-+.
T Consensus 108 -----~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 108 -----NISSPILRKLLELYRF 123 (262)
T ss_dssp -----TGHHHHHHHHHHHGGG
T ss_pred -----cchHHHHHHHhhcccc
Confidence 2345566666663333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.6 Score=34.65 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.4
Q ss_pred CCCCCCeEEEEcCCCCcchHHHh
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
...++.+|||+++.+|.=+..|+
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLL 174 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLL 174 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHH
Confidence 45889999999999999888777
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.36 E-value=5.5 Score=32.10 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=47.5
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCC--CeEEEeeCHHHH
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGD--GTCSFYFSEDFL 199 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 199 (231)
..++++--++.++++++-..+++-+..... .+.+++.+...+........ ..++..++- .+...+-+.+..
T Consensus 189 pTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~Fg~vM------~~nlk~r~~~L~gle~y~s~Esq 261 (335)
T KOG2918|consen 189 PTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRFGKVM------LANLKRRGCPLHGLETYNSIESQ 261 (335)
T ss_pred ceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChHHHHH------HHHHHhcCCCCchhhhcccHHHH
Confidence 344555556777877777777777777664 44455555333333221111 111111111 111246788999
Q ss_pred HHHHHHcCceEEEEE
Q 045799 200 STLFLEAGFSTVDIN 214 (231)
Q Consensus 200 ~~~l~~~Gf~~~~~~ 214 (231)
++-+.++||+-+.+.
T Consensus 262 ~~Rf~~~Gw~~v~a~ 276 (335)
T KOG2918|consen 262 RSRFLKAGWEYVIAV 276 (335)
T ss_pred HHHHHhcCCceeehh
Confidence 999999999877653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.1 Score=37.06 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
..|||+=||.|.++..|+.... ++++++....++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~------~V~gvE~~~~av 231 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK------KVIGVEIVEEAV 231 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS------EEEEEES-HHHH
T ss_pred CcEEEEeecCCHHHHHHHhhCC------eEEEeeCCHHHH
Confidence 3899999999999999985533 556777665554
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=84.01 E-value=1.3 Score=35.32 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=40.1
Q ss_pred CCCeeEEEEeeeeecc-CCCCHHHHHHHHHHhcCCCeEEEEEec-cCCchhhhhhhccccccccceEEeCCCeEEEeeCH
Q 045799 119 PSSVDVVTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYILVCDY-AIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSE 196 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (231)
.+.||+|+.....-|+ .+ .+..+++|+|++++... ...++...... --.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p--------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~---------------------~F~ 270 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP--------ELFQALAPDAVLVVETAKFMVDLRKEQLQ---------------------EFV 270 (289)
T ss_pred cCCCCEEEEhhhhHhhcch--------HHHHHhCCCCEEEEEcchhheeCCHHHHH---------------------HHH
Confidence 4689999987754443 22 26778899999988642 11122111000 013
Q ss_pred HHHHHHHHHcCceEEE
Q 045799 197 DFLSTLFLEAGFSTVD 212 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~ 212 (231)
+.+.++++++||+.+.
T Consensus 271 ~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 271 KKVKELAKAAGFKPVT 286 (289)
T ss_pred HHHHHHHHHCCCcccc
Confidence 5789999999998654
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.99 E-value=2.9 Score=32.38 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHh
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+++.+||-+|+++|....+..
T Consensus 154 ikpGsKVLYLGAasGttVSHvS 175 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVS 175 (317)
T ss_pred ecCCceEEEeeccCCceeehhh
Confidence 4889999999999999887776
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=83.77 E-value=1.7 Score=33.90 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 138 KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 138 ~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
....+|..++..|.|||++++-|++.
T Consensus 190 sT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 190 STKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 45678999999999999999988766
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.66 E-value=3.4 Score=30.83 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
.++..|+|+|.--|.-+.+++..........+++++|++-..... ..+++.--+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 456789999999998888887322111122345555544322110 1122223444
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA 167 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~ 167 (231)
++...-|++ +...+.++.+..+|..|-++++.|....+..
T Consensus 148 vilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 148 VILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 455556666 5666778888899999999998876665544
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.63 E-value=0.97 Score=34.41 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCcchHHHhcC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSH 93 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~ 93 (231)
....|+|.-||-|+.+..++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~ 115 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ 115 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh
Confidence 4568999999999999888843
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.26 E-value=8 Score=33.58 Aligned_cols=21 Identities=14% Similarity=0.490 Sum_probs=17.2
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+..+|+|-.||+|.+.....
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~ 205 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAA 205 (489)
T ss_pred CCCCeecCCCCchhHHHHHHH
Confidence 355699999999999877665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 3e-13
Identities = 38/278 (13%), Positives = 82/278 (29%), Gaps = 85/278 (30%)
Query: 2 ITTVQRRHRHSLPAAIQPQNYPLEEHYQS-KAKKYWDGFYKRHKNKFFKDRHYLE---KD 57
++ R P + YQ + + Y Y + +
Sbjct: 1 MSGADRSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRC 60
Query: 58 WGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEF--------------------- 96
F+ + + ++++G G T++ L+S
Sbjct: 61 LAQTFATGEV----SGRTLIDIGSGP--TVYQLLSACSHFEDITMTDFLEVNRQELGRWL 114
Query: 97 ----------------------------REERVNAFVCNVVNDDL-------SRNVNPSS 121
+E ++ A V V+ D+ + + P
Sbjct: 115 QEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLP 174
Query: 122 VDVVTLIFMLSAVSPKKM--PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIG 179
D + F L AVSP L +I +L+P G++L+ +
Sbjct: 175 ADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG----------------ALE 218
Query: 180 DSFYVRGDGTCS-FYFSEDFLSTLFLEAGFSTVDINIH 216
+S+Y+ G+ + SE+ + + +G+ D+ +
Sbjct: 219 ESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTY 256
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 3e-11
Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 30/209 (14%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG 84
+ A Y D F + ++ + + E + N + VLE G G G
Sbjct: 6 NGLFDEWAHTY-DSFVQGEDIQYKEVFAHYEDILED-------VVNKSFGNVLEFGVGTG 57
Query: 85 NTIFPLVSH---------SE-----FRE---ERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127
N L+ S +E + + + ++ ++ P+S+D +
Sbjct: 58 NLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEV-----PTSIDTIVS 112
Query: 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGD 187
+ ++ + + + +L G I+ D D + D
Sbjct: 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLAND 172
Query: 188 GTCSFYFSEDFLSTLFLEAGFSTVDINIH 216
+Y + T+F GF ++
Sbjct: 173 LQTEYYTRIPVMQTIFENNGFHVTFTRLN 201
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 4e-11
Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 32/193 (16%)
Query: 35 YWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSH- 93
+ +Y + KF R ++ Y + VL++GCG G +
Sbjct: 9 HTSDYYFLFEEKFRGSRELVKARLRRYIPYFK-----GCRRVLDIGCGRGEFLELCKEEG 63
Query: 94 ------------SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPL 141
+F E + N + + ++ +D V + + + P+++
Sbjct: 64 IESIGVDINEDMIKFCEGKFNVVKSDAIEYLK--SLPDKYLDGVMISHFVEHLDPERLFE 121
Query: 142 ILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLST 201
+L + +K YI++ + L D + + + L
Sbjct: 122 LLSLCYSKMKYSSYIVI---ESPNP--TSLYSLINFYIDPTHKK-------PVHPETLKF 169
Query: 202 LFLEAGFSTVDIN 214
+ GF V I
Sbjct: 170 ILEYLGFRDVKIE 182
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-10
Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 36/204 (17%)
Query: 23 PLEEHYQSKAKKY------WDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVV 76
+ H+ + ++ ++ H+ + + ++ P G
Sbjct: 5 KIHHHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVKCLL----------PEGR---G 51
Query: 77 LEVGCGAGNTIFPL-----VSHSEFREERVNAFVCNVVNDDLSR-NVNPSSVDVVTLIFM 130
+E+G G G PL V SE E V+ + S D ++
Sbjct: 52 VEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTT 111
Query: 131 LSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGT 189
+ V P++ L+ +LK GY++V F + + R
Sbjct: 112 ICFVDDPERA---LKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARF--- 165
Query: 190 CSFYFSEDFLSTLFLEAGFSTVDI 213
FS + L L +AGF +
Sbjct: 166 ----FSTEELMDLMRKAGFEEFKV 185
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-09
Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 39/199 (19%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
+ Y S + DR +E G V+L+VG G G
Sbjct: 7 KAYSSPTFDAEALLGTVISAEDP-DRVLIEP-----------WATGVDGVILDVGSGTGR 54
Query: 86 TIFPLVSH----------SEFREE-RVNAFVCNVVNDDLSR-NVNPSSVDVVTLIFMLSA 133
L S + E R + ++ + +P + + L
Sbjct: 55 WTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114
Query: 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFY 193
+ P ++P L ++ ++ G L+ + G + + ++
Sbjct: 115 MGPGELPDALVALRMAVEDGG-GLLMSFFSGPSLE--------------PMYHPVATAYR 159
Query: 194 FSEDFLSTLFLEAGFSTVD 212
+ L+ AGF
Sbjct: 160 WPLPELAQALETAGFQVTS 178
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 2e-09
Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 35/215 (16%)
Query: 15 AAIQPQNYPLEEHYQSKAKKYWDGFYKRHKNKF--FKDRHYLEKDWGNYFSDDSCCPNGN 72
A + Y E+ + KA +YW H ++ + F + P
Sbjct: 36 AELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNF--IASLPGHG 93
Query: 73 PKVVLEVGCGAGNTIFPL-------VSHSEF--------REERVNAFVCNVVNDDLSR-N 116
L+ G G G L E + E V + +
Sbjct: 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT 153
Query: 117 VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQ 176
+ P++ D++ + + ++ ++ + L P+GYI +
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG----------- 202
Query: 177 MIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTV 211
D F V + S S+ LF E+G V
Sbjct: 203 ---DRFLVDKE-DSSLTRSDIHYKRLFNESGVRVV 233
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-09
Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 37/160 (23%)
Query: 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------NVN----- 118
VLE+ G G L +RV A D S NV
Sbjct: 50 VLELASGTGYWTRHLSG----LADRVTAL-------DGSAEMIAEAGRHGLDNVEFRQQD 98
Query: 119 ------PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL 172
D V L+ V + +++++ + P G + D + +
Sbjct: 99 LFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQD 158
Query: 173 DRNQMIGDSFYVRGDGT---CSFYFSEDFLSTLFLEAGFS 209
D + ++ + + S L+ G+S
Sbjct: 159 DSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS 198
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 6e-09
Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 24/176 (13%)
Query: 73 PKVVLEVGCGAGNTIFPLVSHSEF-----------------REERVNAFVCNVVNDDLSR 115
K VL+ G G + + N + D
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL 83
Query: 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD--FAQVKLLD 173
S+ V + + + + IK VLKP G + D + + + +
Sbjct: 84 PFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIG 143
Query: 174 RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDITM 229
+ + RG+ Y S + F + + + N I
Sbjct: 144 EGEFLQ---LERGEKVIHSYVSLEEADKYF--KDMKVLFKEDRVVERINDGLKIKQ 194
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 33/197 (16%)
Query: 33 KKYWDGFYKRHKNKFFKDRHYLE---KDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFP 89
+ Y+ K HY + + K VL++GC +G
Sbjct: 3 NSPKNSLYE------EKSGHYYNAVNPNLLKHIKK-------EWKEVLDIGCSSGALGAA 49
Query: 90 LVSH---------SEFREERVNAFVCNVVNDDLSR---NVNPSSVDVVTLIFMLSAVS-P 136
+ + E+ + +VV D+ D V +L + P
Sbjct: 50 IKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP 109
Query: 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSE 196
+++ +K +K +G IL + + + L + Y D T +F+
Sbjct: 110 WA---VIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWT-YTEYGLLDKTHIRFFTF 165
Query: 197 DFLSTLFLEAGFSTVDI 213
+ + +FL+AG+S +
Sbjct: 166 NEMLRMFLKAGYSISKV 182
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 74 KVVLEVGCGAGNTIFPLVSHS-------------EFREERVNAFVCNVVNDDLSRNVNPS 120
V+++ GCG G L+ + + +E+ + +V+ + + +
Sbjct: 19 GVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFD----SVITLSDPKEIPDN 74
Query: 121 SVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDY 161
SVD + + + + + +K +LK DG +++ D+
Sbjct: 75 SVDFILFANSFHDMDDKQHV---ISEVKRILKDDGRVIIIDW 113
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-08
Identities = 26/208 (12%), Positives = 56/208 (26%), Gaps = 32/208 (15%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG 84
++ + K K D K + + G +++G G G
Sbjct: 6 KKKFDKKGAKNMDEISKTLFAPIYPI-------IAENIINRFGITAGT---CIDIGSGPG 55
Query: 85 NTIFPLVSHSEFR-------EERVNAFVCNVVNDDLSRNVN---------P---SSVDVV 125
L S+F + + N+ + +L+ + P + D++
Sbjct: 56 ALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLI 115
Query: 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVR 185
+ + I +LK G + + + +
Sbjct: 116 VSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEF 173
Query: 186 GDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
S E F + + E G S+ +I
Sbjct: 174 NRKNISQENVERFQN-VLDEIGISSYEI 200
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-08
Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 26/143 (18%)
Query: 76 VLEVGCGAGNTIFPLVSH----------SEFREERVNAFVCNVVNDDLSRNVNPSSVDVV 125
+LE+GCGAG +++ E E V + + D V
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAV 106
Query: 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVR 185
L V ++ +L+ I LKP G + Y G+ L R +Y
Sbjct: 107 WAHACLLHVPRDELADVLKLIWRALKPGG-LFYASYKSGEGEGRDKLAR-------YYN- 157
Query: 186 GDGTCSFYFSEDFLSTLFLEAGF 208
Y SE++L + EAG
Sbjct: 158 -------YPSEEWLRARYAEAGT 173
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Length = 263 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-08
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 19/125 (15%)
Query: 95 EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKM--PLILQNIKAVLKP 152
+ R C+V + D V + + L N+ ++LKP
Sbjct: 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP 189
Query: 153 DGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCS-FYFSEDFLSTLFLEAGFSTV 211
G+++ + Y+ G S + + L+AGF
Sbjct: 190 GGHLVTTV----------------TLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIE 233
Query: 212 DINIH 216
+
Sbjct: 234 QLLHS 238
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Length = 265 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 4e-08
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 19/137 (13%)
Query: 95 EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKM--PLILQNIKAVLKP 152
+ R C+V V+ D + L A P L+N+ ++LKP
Sbjct: 131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP 190
Query: 153 DGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCS-FYFSEDFLSTLFLEAGFSTV 211
G++++ D + S+Y+ G+ S + + EAG++
Sbjct: 191 GGFLVMVD----------------ALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIE 234
Query: 212 DINIHLKQIKNRSQDIT 228
+ + + + +
Sbjct: 235 QFEVISQNYSSTTSNNE 251
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 26/171 (15%), Positives = 49/171 (28%), Gaps = 32/171 (18%)
Query: 72 NPKVVLEVGCGAGNTIFPLVSHS---------------EFREERVNAFV-CNVVNDDLSR 115
+L++G G G L+ E + R + + D S+
Sbjct: 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSK 103
Query: 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN 175
D+V + + + + + ++LK G + D G+ A ++ L++
Sbjct: 104 YDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKT 163
Query: 176 QMIGDSFYVRGDGTCS-------------FYFSEDFLSTLFLEAGFSTVDI 213
YV G + EAGF V
Sbjct: 164 IW---RQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSC 211
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 6e-08
Identities = 39/218 (17%), Positives = 58/218 (26%), Gaps = 58/218 (26%)
Query: 25 EEHYQSKAKKYWDG---FYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGC 81
+ ++ A+K WD F+ ++ + + +F VL+VGC
Sbjct: 9 KFNWHESAEKKWDSSAEFWNQNSQEMW--DSGSRSTIIPFFEQ----YVKKEAEVLDVGC 62
Query: 82 GAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------RNVNP------------- 119
G G + L V D+S R P
Sbjct: 63 GDGYGTYKLSRT-----------GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLP 111
Query: 120 ---SSVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN 175
+ + I L P + L IK VLK DGY + + R
Sbjct: 112 FENEQFEAIMAINSLEWTEEPLRA---LNEIKRVLKSDGYACIAILGPTAKPRENSYPR- 167
Query: 176 QMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
+ G L E GF VD
Sbjct: 168 --------LYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 7e-08
Identities = 29/205 (14%), Positives = 59/205 (28%), Gaps = 24/205 (11%)
Query: 34 KYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSH 93
+ K + + D + F + P P +LE+G G+ L H
Sbjct: 10 QEIK------DTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH 63
Query: 94 S------EFREERVNA------FVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVS-PKKMP 140
E EE ++ ++ P D + L +L + P +
Sbjct: 64 FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVAL- 122
Query: 141 LILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC--SFYFSEDF 198
+ + L G + + ++ + + +S + ++ D
Sbjct: 123 -LKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDT 181
Query: 199 LSTLFLEAGFSTVDIN-IHLKQIKN 222
L AG + I K + N
Sbjct: 182 LERDASRAGLQVTYRSGIFFKALAN 206
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 29/166 (17%)
Query: 72 NPKVVLEVGCGAGN--------------TIF--PLVSHSEFRE--------ERVNAFVCN 107
+PK +L++G G TI P R+ ER++ N
Sbjct: 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQL-EMMRKQTAGLSGSERIHGHGAN 237
Query: 108 VVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA 167
+++ D+ P+ D V + L S +++ IL + + D + + +
Sbjct: 238 LLDRDVPF---PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQR 294
Query: 168 QVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
I F +G + S+D AG +I
Sbjct: 295 YETASYCLTQISLYFTAMANGNSKMFHSDDL-IRCIENAGLEVEEI 339
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 3e-07
Identities = 19/169 (11%), Positives = 43/169 (25%), Gaps = 31/169 (18%)
Query: 75 VVLEVGCGAGNTIFPLVSHSEFREERVNAF--------VC--NVVNDDLSRNVN------ 118
VV V CG + + L +S ++ L+ +
Sbjct: 121 VVASVPCGWMSELLAL-DYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA 179
Query: 119 -----PSSVDVVTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYILVCDY-------AIGD 165
D++T + ++ + + LKP G ++
Sbjct: 180 WKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSP 239
Query: 166 FAQVKLLDRNQMIGDSFYVRGDGTCSFYF-SEDFLSTLFLEAGFSTVDI 213
+ + + + + R + EAGF+ +
Sbjct: 240 WDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRF 288
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 17/120 (14%)
Query: 98 EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYIL 157
R + + D + D+V L L +L+ IK L +G ++
Sbjct: 214 ASRYHTIAGSAFEVDY-----GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVI 268
Query: 158 VCDYAIGD----FAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
V D+ + +G ++ ++F AGFS +
Sbjct: 269 VFDFIPNSDRITPPDAAAFSLVMLA-----TTPNGDA---YTFAEYESMFSNAGFSHSQL 320
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 5e-07
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 31/162 (19%)
Query: 76 VLEVGCGAGNTIFPLVSH-----------------------SEFREERVNAFVCNVVNDD 112
VLE GCG G L + + + V N+ +
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP 100
Query: 113 LSRNVNPSSVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKL 171
+ S D + + F+L + P++ L+++K VLKP G I V + G
Sbjct: 101 FEDS----SFDHIFVCFVLEHLQSPEE---ALKSLKKVLKPGGTITVIEGDHGSCYFHPE 153
Query: 172 LDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
+ + + L E+GF + +
Sbjct: 154 GKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRV 195
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-06
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 28/180 (15%)
Query: 6 QRRHRHSLPAAIQPQNYPLEEHYQSKAKK-YWDGFYKRHKNKFFKDRH--YLEKDWGNYF 62
Q+ S + P + ++ W+ ++ + + R +
Sbjct: 5 QQNSDQSNGGNVIPTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLV---- 60
Query: 63 SDDSCCPNGNPKVVLEVGCGAGNTIFPLVSH--------------SEFREERVNAFV--- 105
D S P G L GCG G+ + + S ++ E ++
Sbjct: 61 -DTSSLPLGR---ALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEY 116
Query: 106 CNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165
+ V +D+ D++ A+ P+ P +++ +LKPDG ++ Y I D
Sbjct: 117 FSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITD 176
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-06
Identities = 40/244 (16%), Positives = 74/244 (30%), Gaps = 62/244 (25%)
Query: 4 TVQRRHRHS---LPAAIQPQNYPLEEHYQSKAKKYWD-----------GFYKRHKNKFFK 49
+ H HS +P + E+ + SKAK YW G+
Sbjct: 3 SSHHHHHHSSGLVPRGSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINS 62
Query: 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSH---------------- 93
R +L++ L+ G G G L+
Sbjct: 63 SRKFLQRFLREG------PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLV 116
Query: 94 ------SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIK 147
E + N F C + + P S DV+ + +++ ++ + + L+ K
Sbjct: 117 QAKTYLGEEGKRVRNYFCCGLQDFTPE----PDSYDVIWIQWVIGHLTDQHLAEFLRRCK 172
Query: 148 AVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207
L+P+G I++ D + + +D S D + + AG
Sbjct: 173 GSLRPNGIIVIKDNMAQEGVILDDVDS----------------SVCRDLDVVRRIICSAG 216
Query: 208 FSTV 211
S +
Sbjct: 217 LSLL 220
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMI 178
+ DVV L L ++ ++ + ++KP G +L+ + D DR
Sbjct: 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND-------DRVTPA 298
Query: 179 GDSFY------VRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212
+ + G +++ + +AG + +
Sbjct: 299 LSADFSLHMMVNTNHGEL---HPTPWIAGVVRDAGLAVGE 335
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-06
Identities = 34/256 (13%), Positives = 70/256 (27%), Gaps = 63/256 (24%)
Query: 7 RRHRHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDS 66
R + A + L + Y A + +D F+ +
Sbjct: 30 RTPHADVLLASVGERGVLCDFYDEGAADTYR--------DLIQDADGT--SEAREFATRT 79
Query: 67 CCPNGNPKVVLEVGCGAGNTIFPLVSH---------SE----------FREERVNAFVCN 107
+G VLE+ G G FP + S C
Sbjct: 80 GPVSGP---VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCT 136
Query: 108 VVNDDLSRNVNPSSVDVVTLIF-MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDF 166
+V D+S V + ++ + + +++ L+P G + A+ +
Sbjct: 137 LVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGG-KFLLSLAMSEA 195
Query: 167 AQVKLLDRNQMIGD---------------------SFYVRGDGTCSF--------YFSED 197
A+ + L+R Q + + + + T F + D
Sbjct: 196 AESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPD 255
Query: 198 FLSTLFLEAGFSTVDI 213
+ + +GF +
Sbjct: 256 QVVRELVRSGFDVIAQ 271
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 5e-06
Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 47/219 (21%)
Query: 34 KYWDGF--YKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLV 91
KY + F + H + + +++K + +L +G GAG ++
Sbjct: 14 KYVESFRRFLNHSTEHQCMQEFMDKKLPGII--GRIGDTKSEIKILSIGGGAGEIDLQIL 71
Query: 92 SH----------------------SEFREE------------RVNAFVCNVVNDDLSRNV 117
S ++++E + + +
Sbjct: 72 SKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131
Query: 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQM 177
D + +I ML V K +P L+ ++L + +L+
Sbjct: 132 ELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVV------SGSSGWDKLW 183
Query: 178 IGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216
D C + S+D L+ + G ++
Sbjct: 184 KKYGSRFPQDDLCQYITSDD-LTQMLDNLGLKYECYDLL 221
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-06
Identities = 14/150 (9%), Positives = 42/150 (28%), Gaps = 20/150 (13%)
Query: 33 KKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNP-KVVLEVGCGAGNTIFPLV 91
W+ ++ + + NP +++ CG G L
Sbjct: 16 ADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLS 75
Query: 92 SH------------------SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM-LS 132
E ++ + + + + + ++ D +
Sbjct: 76 QFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH 135
Query: 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYA 162
+ +K L+ Q+++ +L G + + +
Sbjct: 136 HIPVEKRELLGQSLRILLGKQGAMYLIELG 165
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 8e-06
Identities = 44/222 (19%), Positives = 74/222 (33%), Gaps = 42/222 (18%)
Query: 35 YWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSH- 93
Y DG R + D ++ + VL+V CG G LV
Sbjct: 22 YADGEAARVWQLYIGDTRSRTAEYKAWL--LGLLRQHGCHRVLDVACGTGVDSIMLVEEG 79
Query: 94 --------SEF-----REERVNA-----FVCNVVND----DLSRNVNPS-SVDVVTLIF- 129
S+ +ER N F V+ + L ++V D V +
Sbjct: 80 FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGN 139
Query: 130 -----MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYV 184
S + L L+NI ++++P G +LV D+ D+ L G + Y
Sbjct: 140 SFAHLPDSKGDQSEHRLALKNIASMVRPGG-LLVIDHRNYDYI---LSTGCAPPGKNIYY 195
Query: 185 RGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQD 226
+ D T + S L + V ++ + Q+ +D
Sbjct: 196 KSDLT-----KDITTSVLTVNNKAHMVTLDYTV-QVPGAGRD 231
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-06
Identities = 31/233 (13%), Positives = 61/233 (26%), Gaps = 60/233 (25%)
Query: 28 YQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTI 87
Y A +D + + Y K W ++ + N L++ CG GN
Sbjct: 3 YNKFAH-IYDKLIRADVD-------Y--KKWSDFIIEKCVENNLVFDDYLDLACGTGNLT 52
Query: 88 FPLVSH---------SE------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF--M 130
L S+ + R + D+S D++T
Sbjct: 53 ENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDST 112
Query: 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGD---------- 180
+ + + + LK G + + D I + ++ + N
Sbjct: 113 NYIIDSDDLKKYFKAVSNHLKEGG-VFIFD--INSYYKLSQVLGNNDFNYDDDEVFYYWE 169
Query: 181 ------------SFYVRGDGTCSF--------YFSEDFLSTLFLEAGFSTVDI 213
SF+VR + E+ + + +D
Sbjct: 170 NQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDK 222
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 22/107 (20%)
Query: 75 VVLEVGCGAGNTIFPLVSH-----------------SEFREERVNAFVCNV---VNDDLS 114
VL+VG GAG + L + E+ + NV +++
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99
Query: 115 RNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161
+ ++VD + + F +S L+ +K V KP Y+ + D+
Sbjct: 100 IPLPDNTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDW 144
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 25/154 (16%)
Query: 76 VLEVGCGAGNTIFPLVSH----------SEFREERVNAFV-----CNVVNDD-LSRNVNP 119
VL++G G G + N V +D L++
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPE 118
Query: 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIG 179
++ D++ + A+S + + Q LKP G +L+ DY + +
Sbjct: 119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE---------KENWD 169
Query: 180 DSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
D F + + + + F V
Sbjct: 170 DEFKEYVKQRKYTLITVEEYADILTACNFKNVVS 203
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 48/179 (26%)
Query: 34 KYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSH 93
+ + + + ++ LE Y VL++ CG G F L
Sbjct: 8 RVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGK--------VLDLACGVGGFSFLL--- 56
Query: 94 SEFREERVNAFVCNVVNDDLS-------------RNVN--------------PSSVDVVT 126
+ VV D+S R N + D V
Sbjct: 57 --------EDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVI 108
Query: 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVR 185
I + P ++ + + ++ VLKP G ++ + + + L + ++G +++
Sbjct: 109 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLREL--LPRLKESLVVGQKYWIS 165
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-05
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 22/112 (19%)
Query: 73 PKVVLEVGCGAGNTIFPLVSHSEFR-------EERVNAFVCNVVNDDLSRNVN------- 118
+ ++GCG G L + + + + + F N V + + V
Sbjct: 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106
Query: 119 -----PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165
+D++ + + ++ + LK G+I V + +
Sbjct: 107 NLPFQNEELDLIWSEGAIYNIGFERG---MNEWSKYLKKGGFIAVSEASWFT 155
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-05
Identities = 21/170 (12%), Positives = 51/170 (30%), Gaps = 25/170 (14%)
Query: 9 HRHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCC 68
H + ++ +A K +
Sbjct: 57 AEHIFTPESHIPFVEPQAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAA 116
Query: 69 PNGNPKVVLEVGCGAG-NTIF-------------------PLVSHSEFREERVNAFVCNV 108
+P VL++GCG G N+++ L E ++ + ++
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDI 176
Query: 109 VNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158
++ + D + + ++ +++P I++N+K GY L+
Sbjct: 177 NAANI-----QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI 221
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-05
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 25/111 (22%)
Query: 72 NPKVVLEVGCGAGNTIFPLVSHSEFRE------------------------ERVNAFVCN 107
N K V+++GCG GN + L+ F + E +
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 108 VVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158
+ + R+ S D T+I ++ + ++ + + +P ++V
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP-QTVIV 138
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 8e-05
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 49/167 (29%)
Query: 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------NVN- 118
VL++G GAG+T + V + D ++ NV
Sbjct: 25 VLDIGAGAGHTALAFSPY-----------VQECIGVDATKEMVEVASSFAQEKGVENVRF 73
Query: 119 --------P---SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY-AIGDF 166
P S D++T + S ++ + VLK DG L+ D+ A D
Sbjct: 74 QQGTAESLPFPDDSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP 131
Query: 167 AQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
+ ++ + D +VR S +F + DI
Sbjct: 132 VLDEFVNHLNRLRDPSHVR-------ESSLSEWQAMFSANQLAYQDI 171
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 9e-05
Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 27/157 (17%)
Query: 76 VLEVGCGAGNTIFPLVSHSEFR-------EERVNAFVCNVVNDDLSRNVN---------- 118
VL+VGCG G L + + R +VN L+ V
Sbjct: 65 VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124
Query: 119 --PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQ 176
+S D V + L + P + L+ + VL+P G + + D+ + + +
Sbjct: 125 FEDASFDAVWALESLHHM-PDR-GRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVD 182
Query: 177 MIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
V G Y + +A
Sbjct: 183 AFRAGGGVLSLGGIDEY------ESDVRQAELVVTST 213
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSF 182
D V +L + + + ++ + ++ G +L+ D I D + I +
Sbjct: 258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAG 317
Query: 183 YVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
+ + G+ V +
Sbjct: 318 MPFSVLGF---KEQARYKEILESLGYKDVTM 345
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 25/159 (15%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
E Y A+ Y+D Y+R + + ++E+ + + VL++ CG G
Sbjct: 3 ELYTLLAE-YYDTIYRRRIERVKAEIDFVEEIFKEDA-------KREVRRVLDLACGTGI 54
Query: 86 TIFPLVSH---------SE------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF- 129
L E R+ + + D+ + D VT+ F
Sbjct: 55 PTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFS 114
Query: 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ 168
+ + + + + LKP G + + D+ +
Sbjct: 115 TIMYFDEEDLRKLFSKVAEALKPGG-VFITDFPCWFYGG 152
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 27/167 (16%), Positives = 44/167 (26%), Gaps = 49/167 (29%)
Query: 76 VLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------NVN- 118
VL+V G G+ V VV DL+ V
Sbjct: 41 VLDVATGGGHVANAFAPF-----------VKKVVAFDLTEDILKVARAFIEGNGHQQVEY 89
Query: 119 --------P---SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA-IGDF 166
P +VT + VLK G +L+ D + +
Sbjct: 90 VQGDAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND 147
Query: 167 AQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
A + + D + R + + + EAGF ++
Sbjct: 148 AFDVFYNYVEKERDYSHHR-------AWKKSDWLKMLEEAGFELEEL 187
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 73 PKVVLEVGCGAG-NTIF---------------PLVSHSEFREERVNAFVCNVVNDDLSRN 116
P L++GCG G N+++ +++ E + N + DL+
Sbjct: 33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL 92
Query: 117 VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161
D + +L + K +P ++ N++ KP GY L+
Sbjct: 93 TFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 29/232 (12%), Positives = 59/232 (25%), Gaps = 51/232 (21%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG 84
+ Y + + +D ++ + ++ L + + +L+V CG G
Sbjct: 11 QADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRH--------SPKAASLLDVACGTG 62
Query: 85 NTIFPLVSH---------SEF--REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF--ML 131
+ L S R + + D+ VT +F +
Sbjct: 63 MHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIG 122
Query: 132 SAVSPKKMPLILQNIKAVLKPDGYILV---------------------CDYAIGDFAQVK 170
++ L+ A + PDG ++V + +
Sbjct: 123 HLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSS 182
Query: 171 LLDRNQMIGDSFYVRGDGTCSFYFSEDF---------LSTLFLEAGFSTVDI 213
I + V G + E F AG S +
Sbjct: 183 REGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFM 234
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 22/112 (19%)
Query: 73 PKVVLEVGCGAGNTIFPLVSHSEFR-------EERVNAFVCNVVNDDLSRNVN------- 118
++ ++GCG G L H + ++ F N L V
Sbjct: 47 KSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD 106
Query: 119 -----PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165
+D++ + + ++ L + LK GY+ V + +
Sbjct: 107 DLPFRNEELDLIWSEGAIYNIGFERG---LNEWRKYLKKGGYLAVSECSWFT 155
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 5e-04
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 26/116 (22%)
Query: 76 VLEVGCGAGNTIFPLVSH---------SEF-------REERVNAFVCNVVNDDLSRNVNP 119
+L+ GCG G L V ++ D +S
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISET--- 106
Query: 120 SSVDVVTLIF-MLSAVSPKKMPLILQNIKAVLKPDGYILV-----CDYAIGDFAQV 169
D++ ++ ++ L NI L DG ++ + GDF +V
Sbjct: 107 -DFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEV 161
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 5e-04
Identities = 12/113 (10%), Positives = 39/113 (34%), Gaps = 27/113 (23%)
Query: 72 NPKVVLEVGCGAGNTIFPLVSH-------------------------SEFREERVNAFVC 106
+ +++ GCG+G+ + L+ + + +E N
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 107 NVVNDDLS-RNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158
+ + + + VD+ T + ++ + + + + ++ P ++V
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP-KLLIV 832
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 5e-04
Identities = 26/208 (12%), Positives = 55/208 (26%), Gaps = 36/208 (17%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
+ + A+ + D RH + P+ VL++GCG G
Sbjct: 15 DSWHQNAQAWIDAV--RH----GAIESRRQVTDQAILLA---ILGRQPERVLDLGCGEGW 65
Query: 86 TIFPLVSH---------SEF------REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM 130
+ L + + ++ D++ F
Sbjct: 66 LLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFA 125
Query: 131 LSAVSPKKMPLILQNIKAVLKPDGYILV-----CDYAIGDFAQVKLLDRNQMIGDSFYVR 185
L + +L ++ +L P G +++ A GD+ + F
Sbjct: 126 LLHQDIIE---LLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREES----FAGFAGD 178
Query: 186 GDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
++ + AG V +
Sbjct: 179 WQPMPWYFRTLASWLNALDMAGLRLVSL 206
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 6e-04
Identities = 29/167 (17%), Positives = 45/167 (26%), Gaps = 41/167 (24%)
Query: 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------- 114
P G V LE+G G G PL++ + D
Sbjct: 36 PKGEEPVFLELGVGTGRIALPLIAR-----------GYRYIALDADAAMLEVFRQKIAGV 84
Query: 115 -RNVN---------P---SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161
R V P SV V ++ + V P +L VLKP G +L
Sbjct: 85 DRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDW--PKVLAEAIRVLKPGGALLEGWD 142
Query: 162 AIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208
+ L +R + + ++ + G
Sbjct: 143 QAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKE-VEEALRRLGL 188
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 142 ILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLST 201
IL+ G +LV + GD +D + Y G S L
Sbjct: 256 ILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLT----YFGG-----KERSLAELGE 306
Query: 202 LFLEAGFSTVDI 213
L +AG +
Sbjct: 307 LAAQAGLAVRAA 318
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 9e-04
Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 24/110 (21%)
Query: 72 NPKVVLEVGCGAGNTIFPLVSHSEFRE------------------------ERVNAFVCN 107
N + V+++GCG GN + L+ S F + +
Sbjct: 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88
Query: 108 VVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYIL 157
+ ++ D T+I ++ + ++ + + +P I+
Sbjct: 89 IQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 231 | |||
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.83 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.82 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.81 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.8 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.8 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.79 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.79 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.78 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.77 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.76 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.75 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.75 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.75 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.75 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.74 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.74 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.73 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.73 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.72 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.72 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.72 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.72 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.72 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.71 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.71 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.7 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.7 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.7 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.69 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.69 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.69 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.69 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.69 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.69 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.68 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.68 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.67 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.67 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.67 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.67 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.67 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.65 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.64 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.64 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.63 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.63 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.63 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.63 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.63 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.63 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.63 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.63 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.62 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.61 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.61 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.6 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.6 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.59 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.59 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.58 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.58 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.57 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.56 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.56 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.55 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.54 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.54 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.54 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.54 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.53 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.53 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.53 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.52 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.52 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.51 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.51 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.51 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.5 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.5 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.5 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.5 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.49 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.49 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.48 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.48 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.46 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.46 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.45 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.42 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.41 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.41 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.4 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.39 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.39 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.39 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.38 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.37 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.37 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.36 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.36 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.35 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.32 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.32 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.3 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.3 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.3 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.29 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.28 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.27 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.27 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.27 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.26 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.25 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.24 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.24 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.23 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.22 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.21 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.21 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.21 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.21 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.2 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.2 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.19 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.19 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.19 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.16 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.15 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.15 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.15 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.15 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.15 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.14 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.13 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.12 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.12 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.11 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.11 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.11 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.1 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.09 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.08 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.08 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.07 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.06 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.06 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.05 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.05 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.04 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.03 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.03 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.03 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.01 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.0 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.0 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.99 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.99 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.99 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.99 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.98 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.98 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.98 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.98 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.97 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.97 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.97 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.97 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.97 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.96 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.96 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.95 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.95 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.95 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.94 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.93 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.92 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.91 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.91 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.9 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.89 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.89 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.87 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.87 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.85 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.85 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.85 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.85 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.84 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.83 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.83 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.83 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.81 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.8 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.8 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.8 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.8 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.79 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.79 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.79 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.78 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.77 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.77 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.76 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.76 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.76 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.75 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.75 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.75 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.75 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.74 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.74 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.72 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.72 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.71 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.71 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.71 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.69 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.69 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.68 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.67 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.67 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.66 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.64 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.63 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.62 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.6 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.59 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.58 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.57 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.57 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.55 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.55 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.54 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.52 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.52 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.52 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.5 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.46 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.45 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.42 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.39 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.36 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.35 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.28 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.26 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.18 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.16 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.07 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.05 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.03 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.95 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 97.91 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.9 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 97.86 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.81 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.79 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.78 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.67 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.66 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.58 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.53 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.53 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.51 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.47 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.47 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.44 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.42 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.42 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.41 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.38 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.36 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.35 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.31 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.27 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.22 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.12 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.09 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.09 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.02 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 96.91 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.79 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.72 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 96.64 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 96.42 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.21 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.13 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.08 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 95.94 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 95.76 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.2 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.7 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.34 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 94.02 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 93.96 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.58 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 92.63 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.26 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.24 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 92.11 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 89.63 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 87.06 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 86.63 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 84.74 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 81.85 |
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=147.28 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=114.1
Q ss_pred hHHHhh--HHHhhHHHHHHhccCCcccc--hhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccc
Q 045799 25 EEHYQS--KAKKYWDGFYKRHKNKFFKD--RHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREER 100 (231)
Q Consensus 25 ~~~~~~--~~~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~ 100 (231)
++.|.+ ++..||+.+|....+.+..+ ..|..+.+.+++.. ...++.+|||||||+|.++..++... +
T Consensus 8 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~vLDiGCG~G~~~~~~~~~~-~---- 78 (263)
T 2a14_A 8 GDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGP----GGLQGDTLIDIGSGPTIYQVLAACDS-F---- 78 (263)
T ss_dssp HHHHHHHCCHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHST----TSCCEEEEEESSCTTCCGGGTTGGGT-E----
T ss_pred hhhhhhccCHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcC----CCCCCceEEEeCCCccHHHHHHHHhh-h----
Confidence 445555 46689999998777665554 55777777776632 23567899999999998776554221 0
Q ss_pred eeeeeecCCccccc------------------------------------------------------CC---CCCCCee
Q 045799 101 VNAFVCNVVNDDLS------------------------------------------------------RN---VNPSSVD 123 (231)
Q Consensus 101 ~~~~~~D~~~~~~~------------------------------------------------------~~---~~~~~fD 123 (231)
-+++++|+++.++. .+ ...++||
T Consensus 79 ~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD 158 (263)
T 2a14_A 79 QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLAD 158 (263)
T ss_dssp EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEE
T ss_pred cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCC
Confidence 13444444432111 11 1356899
Q ss_pred EEEEeeeeeccCC--CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeE-EEeeCHHHHH
Q 045799 124 VVTLIFMLSAVSP--KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC-SFYFSEDFLS 200 (231)
Q Consensus 124 ~ii~~~~l~~~~~--~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 200 (231)
+|++++++||+.+ +++..++++++++|||||.+++.+....+ ++..+.... ..+++.+++.
T Consensus 159 ~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~----------------~~~~g~~~~~~~~~~~~~l~ 222 (263)
T 2a14_A 159 CVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP----------------SYMVGKREFSCVALEKGEVE 222 (263)
T ss_dssp EEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC----------------EEEETTEEEECCCCCHHHHH
T ss_pred EeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc----------------cceeCCeEeeccccCHHHHH
Confidence 9999999999742 46678999999999999999998643221 111111111 1247999999
Q ss_pred HHHHHcCceEEEEEEEe
Q 045799 201 TLFLEAGFSTVDINIHL 217 (231)
Q Consensus 201 ~~l~~~Gf~~~~~~~~~ 217 (231)
++|+++||+++++....
T Consensus 223 ~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 223 QAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHCCCEEEEEeecc
Confidence 99999999999988765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-20 Score=139.81 Aligned_cols=161 Identities=16% Similarity=0.271 Sum_probs=113.0
Q ss_pred HHhhHHHHHHhccCCcccc-hh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCC
Q 045799 32 AKKYWDGFYKRHKNKFFKD-RH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVV 109 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~ 109 (231)
...+|+..|......+... .. .+...+... ..++.+|||||||+|.++..++.. +.+++++|++
T Consensus 32 ~~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s 97 (235)
T 3lcc_A 32 EEGGWEKCWEEEITPWDQGRATPLIVHLVDTS--------SLPLGRALVPGCGGGHDVVAMASP------ERFVVGLDIS 97 (235)
T ss_dssp HHHHHHHHHHTTCCTTCCSSCCHHHHHHHHTT--------CSCCEEEEEETCTTCHHHHHHCBT------TEEEEEECSC
T ss_pred CHHHHHHHHhcCCCCcccCCCCHHHHHHHHhc--------CCCCCCEEEeCCCCCHHHHHHHhC------CCeEEEEECC
Confidence 4578999887654433211 11 222222211 134469999999999999988742 3456677766
Q ss_pred cccccC-----------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 110 NDDLSR-----------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 110 ~~~~~~-----------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
+.++.. ..++++||+|++..+++|+++++...+++++.++|+|||.+++.++.....
T Consensus 98 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 177 (235)
T 3lcc_A 98 ESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH 177 (235)
T ss_dssp HHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC
T ss_pred HHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc
Confidence 544311 124568999999999999977799999999999999999999987655322
Q ss_pred hhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeeeeccccc
Q 045799 167 AQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQD 226 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 226 (231)
.. .....++.+++.++|+++||+++++......+..+...
T Consensus 178 ~~--------------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~g~ 217 (235)
T 3lcc_A 178 VG--------------------GPPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGK 217 (235)
T ss_dssp CS--------------------CSSCCCCHHHHHHHHGGGTEEEEEEEECTTCCTTTTTS
T ss_pred CC--------------------CCCccCCHHHHHHHHHHcCCeEEEEEecCCccccccCH
Confidence 10 00123689999999999999999999988887776544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-20 Score=141.10 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=104.4
Q ss_pred hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------
Q 045799 53 YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------- 115 (231)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------- 115 (231)
.+...+...+..+ .++.+|||||||+|.++..++.. +.+++++|+++.++..
T Consensus 27 ~~~~~~~~~l~~~-----~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~ 95 (240)
T 3dli_A 27 LVKARLRRYIPYF-----KGCRRVLDIGCGRGEFLELCKEE------GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLK 95 (240)
T ss_dssp HHHHHHGGGGGGT-----TTCSCEEEETCTTTHHHHHHHHH------TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHH
T ss_pred HHHHHHHHHHhhh-----cCCCeEEEEeCCCCHHHHHHHhC------CCcEEEEECCHHHHHHHHhhcceeeccHHHHhh
Confidence 3444444444433 66789999999999999888743 3456788887665321
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeC
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFS 195 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
++++++||+|++..+++|+++++...++++++++|||||.+++.++........... . ....+..+++
T Consensus 96 ~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~ 163 (240)
T 3dli_A 96 SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF----Y--------IDPTHKKPVH 163 (240)
T ss_dssp TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH----T--------TSTTCCSCCC
T ss_pred hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH----h--------cCccccccCC
Confidence 567899999999999999965577999999999999999999987765543221000 0 0111234578
Q ss_pred HHHHHHHHHHcCceEEEEEEEe
Q 045799 196 EDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
.+++.++++++||+++++....
T Consensus 164 ~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 164 PETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEEEec
Confidence 9999999999999999988765
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=136.05 Aligned_cols=149 Identities=18% Similarity=0.287 Sum_probs=101.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc----------------------------cCCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL----------------------------SRNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~----------------------------~~~~~~~~f 122 (231)
+++.+|||+|||+|.++..++.. +.+++++|+++.++ ..++++++|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 102 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSF 102 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCce
Confidence 57789999999999999988744 22445555543321 114467899
Q ss_pred eEEEEeeeeeccCCCCHH---HHHHHHHHhcCCCeEEEEEeccCCchhhhhhh---cc--ccccccceEEeC-----CCe
Q 045799 123 DVVTLIFMLSAVSPKKMP---LILQNIKAVLKPDGYILVCDYAIGDFAQVKLL---DR--NQMIGDSFYVRG-----DGT 189 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~---~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~-----~~~ 189 (231)
|+|++..+++|+ .++. .+++++.++|+|||.+++.++........... .. .......+.... ...
T Consensus 103 D~v~~~~~l~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (235)
T 3sm3_A 103 DFAVMQAFLTSV--PDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEF 180 (235)
T ss_dssp EEEEEESCGGGC--CCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEE
T ss_pred eEEEEcchhhcC--CCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcce
Confidence 999999999999 5555 89999999999999999988766432211000 00 000111111111 123
Q ss_pred EEEeeCHHHHHHHHHHcCceEEEEEEEeeeeecccccc
Q 045799 190 CSFYFSEDFLSTLFLEAGFSTVDINIHLKQIKNRSQDI 227 (231)
Q Consensus 190 ~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 227 (231)
...+++.+++.++|+++||+++++........+..+..
T Consensus 181 ~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~g~~~~ 218 (235)
T 3sm3_A 181 IAHHFTEKELVFLLTDCRFEIDYFRVKELETRTGNKIL 218 (235)
T ss_dssp EEECBCHHHHHHHHHTTTEEEEEEEEEEEECTTSCEEE
T ss_pred eeEeCCHHHHHHHHHHcCCEEEEEEecceeeccCCccc
Confidence 34679999999999999999999988777666555443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-19 Score=132.30 Aligned_cols=125 Identities=15% Similarity=0.171 Sum_probs=96.9
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeeecc
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~~~ 134 (231)
+.+|||+|||+|.++..++.. +.+++++|+++.++. .++++++||+|++..+++|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 115 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL------GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM 115 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT------TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred CCeEEEecCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence 789999999999999988754 235667777655432 14567899999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
+++++..++++++++|+|||.+++.++....... .........+++.+++.++|+++||+++++.
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 116 GPGELPDALVALRMAVEDGGGLLMSFFSGPSLEP---------------MYHPVATAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp CTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE---------------ECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhh---------------hhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence 8779999999999999999999998765544210 0011112456899999999999999999987
Q ss_pred EEee
Q 045799 215 IHLK 218 (231)
Q Consensus 215 ~~~~ 218 (231)
....
T Consensus 181 ~~~~ 184 (203)
T 3h2b_A 181 WDPR 184 (203)
T ss_dssp ECTT
T ss_pred ecCC
Confidence 6543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=134.56 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=109.6
Q ss_pred HHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc
Q 045799 32 AKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND 111 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~ 111 (231)
..++|+.....+...... ...+ ..++..+ .++.+|||+|||+|.++..++.. +.+++++|+++.
T Consensus 13 ~~~~~~~~~~~y~~~~~~-~~~~----~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~ 76 (211)
T 3e23_A 13 TLRFYRGNATAYAERQPR-SATL----TKFLGEL-----PAGAKILELGCGAGYQAEAMLAA------GFDVDATDGSPE 76 (211)
T ss_dssp HHHHHHHSHHHHTTCCCC-CHHH----HHHHTTS-----CTTCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHH
T ss_pred HHHHHHHHHHHHhhccch-hHHH----HHHHHhc-----CCCCcEEEECCCCCHHHHHHHHc------CCeEEEECCCHH
Confidence 455666655555444332 2222 2223222 56789999999999999988854 346778888765
Q ss_pred ccc-----------------CCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc
Q 045799 112 DLS-----------------RNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR 174 (231)
Q Consensus 112 ~~~-----------------~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~ 174 (231)
++. .+ .+++||+|++..+++|++++++..++++++++|||||++++..........
T Consensus 77 ~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------ 149 (211)
T 3e23_A 77 LAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR------ 149 (211)
T ss_dssp HHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE------
T ss_pred HHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc------
Confidence 432 12 568999999999999996558899999999999999999997543322110
Q ss_pred ccccccceEEeCCCeEEEeeCHHHHHHHHHHcC-ceEEEEEEEeeeee
Q 045799 175 NQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG-FSTVDINIHLKQIK 221 (231)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~~~~~~ 221 (231)
...+....+++.+++.++|+++| |+++++......-.
T Consensus 150 ----------~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~ 187 (211)
T 3e23_A 150 ----------DKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGF 187 (211)
T ss_dssp ----------CTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECT
T ss_pred ----------cccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCC
Confidence 11122235689999999999999 99999887655433
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=134.14 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++. ..+++++||+|++..+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~ 118 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL------ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLA 118 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGG
T ss_pred CCCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhh
Confidence 56679999999999999888733 224455555443221 124678999999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeE----EEeeCHHHHHHHHHHcCc
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC----SFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~Gf 208 (231)
|+++++...+++++.++|+|||.+++.++..+.......... ............+.. ..+++.+++.++|+++||
T Consensus 119 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 197 (218)
T 3ou2_A 119 HVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS-EPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW 197 (218)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc-ccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCC
Confidence 996444689999999999999999999877643221110000 000000000111111 236799999999999999
Q ss_pred eEEEEEEEeeeee
Q 045799 209 STVDINIHLKQIK 221 (231)
Q Consensus 209 ~~~~~~~~~~~~~ 221 (231)
+++..........
T Consensus 198 ~v~~~~~~~~~~~ 210 (218)
T 3ou2_A 198 SCSVDEVHPGFLY 210 (218)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEeeeccccceE
Confidence 9877666554433
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=139.30 Aligned_cols=142 Identities=17% Similarity=0.227 Sum_probs=97.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|..+..++... ...+++++++|+++.|++. .++.++||+|++.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~--~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNI--HHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTC--CSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhc--CCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceee
Confidence 778999999999999999988432 2346678899999877531 2345689999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh--hhc------cccccccce-E-Ee-CCCeEEEeeCHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK--LLD------RNQMIGDSF-Y-VR-GDGTCSFYFSED 197 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~--~~~------~~~~~~~~~-~-~~-~~~~~~~~~~~~ 197 (231)
++++|+++++...++++++++|||||.+++.+.......... +.. ......+.. . .. .-......++.+
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~ 226 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 226 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHH
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHH
Confidence 999999777778899999999999999999886655322110 000 000000000 0 00 000001236889
Q ss_pred HHHHHHHHcCceEEEEE
Q 045799 198 FLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~~~ 214 (231)
++.++|+++||+.+++.
T Consensus 227 ~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 227 THKARLHKAGFEHSELW 243 (261)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 99999999999988764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=133.87 Aligned_cols=130 Identities=21% Similarity=0.219 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~~ 130 (231)
+++.+|||||||+|.++..++.. +.+++++|+++.++. .++++++||+|++..+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 125 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT------GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINS 125 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcCh
Confidence 56789999999999999988844 224556665543321 2456789999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++|+ +++..++++++++|+|||++++.++........... .... ....+...++..++.++++++||++
T Consensus 126 l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~l~~~Gf~~ 194 (242)
T 3l8d_A 126 LEWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSY--PRLY-------GKDVVCNTMMPWEFEQLVKEQGFKV 194 (242)
T ss_dssp TTSS--SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGG--GGGG-------TCCCSSCCCCHHHHHHHHHHTTEEE
T ss_pred Hhhc--cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhh--hhhc-------cccccccCCCHHHHHHHHHHcCCEE
Confidence 9999 789999999999999999999988665443221111 0001 1111234589999999999999999
Q ss_pred EEEEEEe
Q 045799 211 VDINIHL 217 (231)
Q Consensus 211 ~~~~~~~ 217 (231)
++.....
T Consensus 195 ~~~~~~~ 201 (242)
T 3l8d_A 195 VDGIGVY 201 (242)
T ss_dssp EEEEEEE
T ss_pred EEeeccc
Confidence 9987553
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=136.24 Aligned_cols=172 Identities=16% Similarity=0.210 Sum_probs=105.9
Q ss_pred HHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeee
Q 045799 27 HYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVC 106 (231)
Q Consensus 27 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~ 106 (231)
.|+.....+|+..+......+......+...+...+ +++.+|||||||+|.++..++.. ..+++++
T Consensus 13 ~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gv 78 (263)
T 3pfg_A 13 DYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHS--------PKAASLLDVACGTGMHLRHLADS------FGTVEGL 78 (263)
T ss_dssp SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC--------TTCCEEEEETCTTSHHHHHHTTT------SSEEEEE
T ss_pred ccchhHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhC--------CCCCcEEEeCCcCCHHHHHHHHc------CCeEEEE
Confidence 455445567777664322222221222233332222 55689999999999999988754 2256677
Q ss_pred cCCcccccC------------------CCCCCCeeEEEEee-eeeccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 107 NVVNDDLSR------------------NVNPSSVDVVTLIF-MLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 107 D~~~~~~~~------------------~~~~~~fD~ii~~~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
|+++.++.. ++ +++||+|++.. +++|++ +++...++++++++|+|||.+++.++..+..
T Consensus 79 D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 157 (263)
T 3pfg_A 79 ELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPEN 157 (263)
T ss_dssp ESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTT
T ss_pred ECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhh
Confidence 776554321 22 67999999998 999994 3477889999999999999999975544331
Q ss_pred hhhhhhc------cc---------------cccccceEEe-CCC--------eEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 167 AQVKLLD------RN---------------QMIGDSFYVR-GDG--------TCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 167 ~~~~~~~------~~---------------~~~~~~~~~~-~~~--------~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
....... .. ..+...+... ..+ ....+|+.+++.++|+++||+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~ 234 (263)
T 3pfg_A 158 FTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFM 234 (263)
T ss_dssp CCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEE
T ss_pred ccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEe
Confidence 1000000 00 0001111111 111 1135689999999999999999886
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-19 Score=137.98 Aligned_cols=126 Identities=18% Similarity=0.286 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||||||+|.++..++... ...++++|+++.++ ..++++++||+|++..
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 166 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL-----YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW 166 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-----CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh-----cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcc
Confidence 567899999999999998887321 11233444433221 1245678999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+++|++++++..++++++++|||||.+++.+....... +... ......+++.+++.++|+++||+
T Consensus 167 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~l~~aGf~ 231 (254)
T 1xtp_A 167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR--------------FLVD-KEDSSLTRSDIHYKRLFNESGVR 231 (254)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC--------------EEEE-TTTTEEEBCHHHHHHHHHHHTCC
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--------------ceec-ccCCcccCCHHHHHHHHHHCCCE
Confidence 99999766789999999999999999999875332111 0000 11113357999999999999999
Q ss_pred EEEEEEE
Q 045799 210 TVDINIH 216 (231)
Q Consensus 210 ~~~~~~~ 216 (231)
++++...
T Consensus 232 ~~~~~~~ 238 (254)
T 1xtp_A 232 VVKEAFQ 238 (254)
T ss_dssp EEEEEEC
T ss_pred EEEeeec
Confidence 9987654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=133.09 Aligned_cols=139 Identities=15% Similarity=0.115 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||||||+|.++..++... .+++++|+++.++. ..+++++||+|++.++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~------~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 114 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF------NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLE 114 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC------SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC------CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHH
Confidence 356789999999999999887432 14556666544321 123578999999999999
Q ss_pred ccCCCCHHHHHHHHH-HhcCCCeEEEEEeccCCchhhhhhhccccccccce-EE--eCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 133 AVSPKKMPLILQNIK-AVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSF-YV--RGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~-~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
|+ +++..++++++ ++|||||.+++.++............ ........ +. .....+..+++.+++.++|+++||
T Consensus 115 ~~--~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 115 HI--DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVK-MGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp GC--SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHH-TTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hh--cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHH-cCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 99 78999999999 99999999999886665432211000 00000000 00 001112246899999999999999
Q ss_pred eEEEEEEEee
Q 045799 209 STVDINIHLK 218 (231)
Q Consensus 209 ~~~~~~~~~~ 218 (231)
+++++.....
T Consensus 192 ~~~~~~~~~~ 201 (250)
T 2p7i_A 192 QVTYRSGIFF 201 (250)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEeeeEe
Confidence 9999876443
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=130.48 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~~ 130 (231)
.++.+|||||||+|.++..++.... .+++++|+++.++. .++++++||+|++..+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 117 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGA-----KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA 117 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-----SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCC-----CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchh
Confidence 4788999999999999998874411 14566666543321 2456789999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh----hhcccc--------ccccceEE---eCCCeEEEeeC
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK----LLDRNQ--------MIGDSFYV---RGDGTCSFYFS 195 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~----~~~~~~--------~~~~~~~~---~~~~~~~~~~~ 195 (231)
++|+ +++..++++++++|||||.+++....+....... +..... ........ .........++
T Consensus 118 l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 195 (253)
T 3g5l_A 118 LHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195 (253)
T ss_dssp GGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCC
T ss_pred hhhh--hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecC
Confidence 9999 8899999999999999999999754432111000 000000 00000000 00011122349
Q ss_pred HHHHHHHHHHcCceEEEEEEEe
Q 045799 196 EDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
.+++.++|+++||+++++....
T Consensus 196 ~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 196 VTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp HHHHHHHHHHTTEEEEEEECCC
T ss_pred HHHHHHHHHHcCCeeeeeecCC
Confidence 9999999999999999987544
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=137.29 Aligned_cols=139 Identities=15% Similarity=0.194 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CC-CCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RN-VNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~-~~~~~fD~i 125 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++. .+ +.+++||+|
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 140 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAER------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLI 140 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEE
Confidence 44689999999999999988744 235566666543321 12 467899999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc-ccccccceEE--eCCCeEEEeeCHHHHHHH
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR-NQMIGDSFYV--RGDGTCSFYFSEDFLSTL 202 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 202 (231)
++..+++|+ +++..++++++++|||||.+++.++............. ...+...... .....+..+++.+++.++
T Consensus 141 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (285)
T 4htf_A 141 LFHAVLEWV--ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLW 218 (285)
T ss_dssp EEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHH
T ss_pred EECchhhcc--cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHH
Confidence 999999999 78999999999999999999998766543221111000 0000000000 001111246899999999
Q ss_pred HHHcCceEEEEEEEe
Q 045799 203 FLEAGFSTVDINIHL 217 (231)
Q Consensus 203 l~~~Gf~~~~~~~~~ 217 (231)
|+++||+++++....
T Consensus 219 l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 219 LEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHHTTCEEEEEEEES
T ss_pred HHHCCCceeeeeeEE
Confidence 999999999987764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=130.19 Aligned_cols=125 Identities=19% Similarity=0.271 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++... ..+++++|+++.++ ..++++++||+|++
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 152 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI 152 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEE
Confidence 357899999999999998887432 11344555443322 11345678999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+++|+++++...+++++.++|+|||.+++.+...... ..+..... ....+.+++.++|+++|
T Consensus 153 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~l~~aG 216 (241)
T 2ex4_A 153 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG--------------VILDDVDS--SVCRDLDVVRRIICSAG 216 (241)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS--------------EEEETTTT--EEEEBHHHHHHHHHHTT
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc--------------ceecccCC--cccCCHHHHHHHHHHcC
Confidence 999999954446699999999999999999987655430 00111111 22458999999999999
Q ss_pred ceEEEEEEE
Q 045799 208 FSTVDINIH 216 (231)
Q Consensus 208 f~~~~~~~~ 216 (231)
|+++++...
T Consensus 217 f~~~~~~~~ 225 (241)
T 2ex4_A 217 LSLLAEERQ 225 (241)
T ss_dssp CCEEEEEEC
T ss_pred CeEEEeeec
Confidence 999998764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-18 Score=133.69 Aligned_cols=84 Identities=25% Similarity=0.460 Sum_probs=63.7
Q ss_pred CCCeeEEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeE-EEeeC
Q 045799 119 PSSVDVVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC-SFYFS 195 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 195 (231)
+++||+|++.++++|++++ ++..++++++++|||||.+++..... ..++....... ..+++
T Consensus 172 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~----------------~~~~~~~~~~~~~~~~~ 235 (289)
T 2g72_A 172 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE----------------ESWYLAGEARLTVVPVS 235 (289)
T ss_dssp CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES----------------CCEEEETTEEEECCCCC
T ss_pred CCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecC----------------cceEEcCCeeeeeccCC
Confidence 4569999999999996544 78999999999999999999974221 11122222111 23689
Q ss_pred HHHHHHHHHHcCceEEEEEEEee
Q 045799 196 EDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
.+++.++|+++||+++++.....
T Consensus 236 ~~~l~~~l~~aGf~~~~~~~~~~ 258 (289)
T 2g72_A 236 EEEVREALVRSGYKVRDLRTYIM 258 (289)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEeeEeec
Confidence 99999999999999999887663
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-19 Score=137.31 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------CCCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------RNVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------~~~~~~~fD~ii~~~~l 131 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++. .+++ ++||+|++..++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l 116 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA------GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAF 116 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT------TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC------CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcch
Confidence 46789999999999999988754 335667777654321 1333 799999999999
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEE-eCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYV-RGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+|+++.+...+++++.++|||||.+++.++.............. .....+.. ........+++.+++.++|+++||++
T Consensus 117 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 195 (220)
T 3hnr_A 117 HHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEA-AKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHV 195 (220)
T ss_dssp GGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHH-HHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEE
T ss_pred hcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHH-HHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEE
Confidence 99943333349999999999999999998655443221100000 00000000 00000013468999999999999999
Q ss_pred EEEEEE
Q 045799 211 VDINIH 216 (231)
Q Consensus 211 ~~~~~~ 216 (231)
+.....
T Consensus 196 ~~~~~~ 201 (220)
T 3hnr_A 196 TFTRLN 201 (220)
T ss_dssp EEEECS
T ss_pred EEeecc
Confidence 887644
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=126.15 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CC-CCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NV-NPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~-~~~~fD~ii~~~ 129 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++.. ++ .+.+||+|++..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR------GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC------CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECc
Confidence 45689999999999999888755 3467888887655421 22 345699999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcccccc-ccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMI-GDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
+++ . .++..++++++++|+|||.+++.++.........+....... ...+..........+++.+++.++|+++||
T Consensus 125 ~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 201 (227)
T 3e8s_A 125 ALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGL 201 (227)
T ss_dssp CCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTE
T ss_pred hhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCC
Confidence 999 5 788999999999999999999998766543221111000000 000000001344567899999999999999
Q ss_pred eEEEEEE
Q 045799 209 STVDINI 215 (231)
Q Consensus 209 ~~~~~~~ 215 (231)
+++++..
T Consensus 202 ~~~~~~~ 208 (227)
T 3e8s_A 202 RLVSLQE 208 (227)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999876
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-18 Score=130.84 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++... .+++++|+++.++. .++++++||+|++
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~ 109 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFV------KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTC 109 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEE
Confidence 567899999999999998887432 14556665543321 2567789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh-hhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK-LLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..+++|+ .++..++++++++|||||.+++.+...+...... +....... ....+..+++..++.++|+++
T Consensus 110 ~~~l~~~--~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~a 180 (260)
T 1vl5_A 110 RIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKE-------RDYSHHRAWKKSDWLKMLEEA 180 (260)
T ss_dssp ESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHH-------HCTTCCCCCBHHHHHHHHHHH
T ss_pred hhhhHhc--CCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHh-------cCccccCCCCHHHHHHHHHHC
Confidence 9999999 7899999999999999999999876554322110 00000000 011112357899999999999
Q ss_pred CceEEEEEEEeee
Q 045799 207 GFSTVDINIHLKQ 219 (231)
Q Consensus 207 Gf~~~~~~~~~~~ 219 (231)
||+++.+......
T Consensus 181 Gf~~~~~~~~~~~ 193 (260)
T 1vl5_A 181 GFELEELHCFHKT 193 (260)
T ss_dssp TCEEEEEEEEEEE
T ss_pred CCeEEEEEEeecc
Confidence 9999988776543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-18 Score=132.33 Aligned_cols=171 Identities=11% Similarity=0.085 Sum_probs=104.7
Q ss_pred HHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeee
Q 045799 27 HYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVC 106 (231)
Q Consensus 27 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~ 106 (231)
.|......+|+..+......... .+...+...+. .++.+|||+|||+|.++..++.. .+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~l~~~-----~~~~v~~~ 72 (219)
T 3dlc_A 8 KFDKKGAKNMDEISKTLFAPIYP---IIAENIINRFG-------ITAGTCIDIGSGPGALSIALAKQ-----SDFSIRAL 72 (219)
T ss_dssp TTSHHHHHHHHHHHHTTTTTHHH---HHHHHHHHHHC-------CCEEEEEEETCTTSHHHHHHHHH-----SEEEEEEE
T ss_pred hhhhcchhhHHHHHHHhhccccH---HHHHHHHHhcC-------CCCCEEEEECCCCCHHHHHHHHc-----CCCeEEEE
Confidence 35555566777776554333221 22233322221 22339999999999999888743 13345555
Q ss_pred cCCccccc------------------------CCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 107 NVVNDDLS------------------------RNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 107 D~~~~~~~------------------------~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|+++.++. .++++++||+|++..+++|+ +++..++++++++|+|||.+++.+..
T Consensus 73 D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 73 DFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW--EDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc--cCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 55543321 14567899999999999999 88999999999999999999998755
Q ss_pred CCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 163 IGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
...................|... ......+++.+++.++|+++||+++++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 202 (219)
T 3dlc_A 151 GNKELRDSISAEMIRKNPDWKEF-NRKNISQENVERFQNVLDEIGISSYEIIL 202 (219)
T ss_dssp SSHHHHHHHHHHHHHHCTTHHHH-HHHHSSHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred CcHHHHHHHHHHHHHhHHHHHhh-hhhccccCCHHHHHHHHHHcCCCeEEEEe
Confidence 44321111100000000000000 00001246889999999999999887764
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=128.85 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=95.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEe
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLI 128 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~ 128 (231)
..++.+|||||||+|.++..++... +.+++++|+++.++ ..++++++||+|++.
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 127 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKY-----GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSR 127 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHH
Confidence 4678899999999999999887421 23455666554322 114567899999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|++++++..++++++++|||||.+++.++........... ....... ....+++.+++.++++++||
T Consensus 128 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~l~~~Gf 198 (266)
T 3ujc_A 128 DAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDE-FKEYVKQ--------RKYTLITVEEYADILTACNF 198 (266)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHH-HHHHHHH--------HTCCCCCHHHHHHHHHHTTC
T ss_pred HHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHH-HHHHHhc--------CCCCCCCHHHHHHHHHHcCC
Confidence 99999987789999999999999999999988655442110000 0000000 00135789999999999999
Q ss_pred eEEEEEEEe
Q 045799 209 STVDINIHL 217 (231)
Q Consensus 209 ~~~~~~~~~ 217 (231)
+++++....
T Consensus 199 ~~~~~~~~~ 207 (266)
T 3ujc_A 199 KNVVSKDLS 207 (266)
T ss_dssp EEEEEEECH
T ss_pred eEEEEEeCC
Confidence 999887654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=128.52 Aligned_cols=166 Identities=17% Similarity=0.321 Sum_probs=104.0
Q ss_pred HHhhHHHHHHhccCCcccc--hhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcc--c-----------
Q 045799 32 AKKYWDGFYKRHKNKFFKD--RHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSE--F----------- 96 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~--~----------- 96 (231)
...||+.+|......+..+ ..+....+..++.. ...++.+|||||||+|.++..++.... +
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~ 93 (265)
T 2i62_A 18 PRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCL----GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLW 93 (265)
T ss_dssp HHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHS----SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHH
T ss_pred HHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcc----cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHH
Confidence 4579999997665543221 11222222233321 135678999999999999887763210 0
Q ss_pred ------ccc--------------------------------ce-eeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCC
Q 045799 97 ------REE--------------------------------RV-NAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 97 ------~~~--------------------------------~~-~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
... .+ .+...|+.......+...++||+|++.++++|+++.
T Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~ 173 (265)
T 2i62_A 94 ELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPD 173 (265)
T ss_dssp HHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS
T ss_pred HHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCC
Confidence 000 02 334444432211011122799999999999966433
Q ss_pred --CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCe-EEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 138 --KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGT-CSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 138 --~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
++..+++++.++|||||.+++.+..... ++..+... ....++.+++.++|+++||+++++.
T Consensus 174 ~~~~~~~l~~~~~~LkpgG~li~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 174 LPAYRTALRNLGSLLKPGGFLVMVDALKSS----------------YYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESSCC----------------EEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHhhCCCCcEEEEEecCCCc----------------eEEcCCccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 7889999999999999999998643321 12222221 1235789999999999999999998
Q ss_pred EEe
Q 045799 215 IHL 217 (231)
Q Consensus 215 ~~~ 217 (231)
...
T Consensus 238 ~~~ 240 (265)
T 2i62_A 238 VIS 240 (265)
T ss_dssp EEC
T ss_pred Eec
Confidence 766
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=128.13 Aligned_cols=134 Identities=17% Similarity=0.202 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++... .+++++|+++.++ ..++++++||+|++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 93 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYV------QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITC 93 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEE
Confidence 678899999999999998887431 1445555544332 12456789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh-hhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK-LLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..+++|+ .++..++++++++|||||.+++.+...+...... +....... ..+.+..+++.+++.++|+++
T Consensus 94 ~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ll~~a 164 (239)
T 1xxl_A 94 RYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRL-------RDPSHVRESSLSEWQAMFSAN 164 (239)
T ss_dssp ESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHH-------HCTTCCCCCBHHHHHHHHHHT
T ss_pred CCchhhc--cCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHh-------ccccccCCCCHHHHHHHHHHC
Confidence 9999999 7899999999999999999999876554332110 00000000 011122357899999999999
Q ss_pred CceEEEEEEEeee
Q 045799 207 GFSTVDINIHLKQ 219 (231)
Q Consensus 207 Gf~~~~~~~~~~~ 219 (231)
||+++.+......
T Consensus 165 Gf~~~~~~~~~~~ 177 (239)
T 1xxl_A 165 QLAYQDIQKWNLP 177 (239)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCcEEEEEeecCc
Confidence 9999988776543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=130.02 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=95.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------CCCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------RNVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------~~~~~~~fD~ii~~~~l~~ 133 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++. .++++++||+|++..+++|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 106 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQ------GLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHH 106 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTT------TCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGG
T ss_pred CCCCEEEEEcCcccHHHHHHHhC------CCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhh
Confidence 56789999999999999998842 346778888765543 1456789999999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 134 ~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
+ +++..++++++++|| ||.+++.++.................. ...+..+++.+++. +|+++||+++++
T Consensus 107 ~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~l~~aGF~~v~~ 175 (261)
T 3ege_A 107 F--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLW-------EDALRFLPLDEQIN-LLQENTKRRVEA 175 (261)
T ss_dssp C--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHH-------HHHHTSCCHHHHHH-HHHHHHCSEEEE
T ss_pred c--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHh-------hhhhhhCCCHHHHH-HHHHcCCCceeE
Confidence 9 889999999999999 998888876654322110000000000 00012346778888 999999999998
Q ss_pred EEEeeeee
Q 045799 214 NIHLKQIK 221 (231)
Q Consensus 214 ~~~~~~~~ 221 (231)
........
T Consensus 176 ~~~~~p~~ 183 (261)
T 3ege_A 176 IPFLLPHD 183 (261)
T ss_dssp EECCEETT
T ss_pred EEecCCCc
Confidence 87755544
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=122.88 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=91.1
Q ss_pred CCeEEEEcCCCCcchHHHhcCcccc----------ccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHH
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFR----------EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLI 142 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~ 142 (231)
+.+|||||||+|.++..++.....+ ..++.+...|+.. .++++++||+|++..+++|+ +++..+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~~~~~~~~d~~~----~~~~~~~fD~v~~~~~l~~~--~~~~~~ 121 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAEN----LPLKDESFDFALMVTTICFV--DDPERA 121 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHTTCEEEECBTTB----CCSCTTCEEEEEEESCGGGS--SCHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCEEEEccccc----CCCCCCCeeEEEEcchHhhc--cCHHHH
Confidence 7899999999999998886431000 0023444444432 24567899999999999999 789999
Q ss_pred HHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 143 LQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 143 l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
++++.++|+|||.+++.++.........+... ..... ......+++.+++.++|+++||+++++....
T Consensus 122 l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 122 LKEAYRILKKGGYLIVGIVDRESFLGREYEKN--KEKSV-----FYKNARFFSTEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp HHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT--TTC-C-----CSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH--hcCcc-----hhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence 99999999999999998766543321111100 00000 0011245899999999999999999987654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=130.44 Aligned_cols=131 Identities=20% Similarity=0.093 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... +.+++++|+++.++. .++++++||+|+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 155 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW 155 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEE
Confidence 677899999999999999887431 225566666554321 255678999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++|+ .++..++++++++|||||.+++.++........... ..+...+. ...+.+..++.++++++
T Consensus 156 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~l~~a 224 (297)
T 2o57_A 156 SQDAFLHS--PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPILDRIK------LHDMGSLGLYRSLAKEC 224 (297)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHHHHHHT------CSSCCCHHHHHHHHHHT
T ss_pred ecchhhhc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHH---HHHHHHhc------CCCCCCHHHHHHHHHHC
Confidence 99999999 669999999999999999999987655432111000 00000000 01245889999999999
Q ss_pred CceEEEEEEEe
Q 045799 207 GFSTVDINIHL 217 (231)
Q Consensus 207 Gf~~~~~~~~~ 217 (231)
||+++++....
T Consensus 225 Gf~~~~~~~~~ 235 (297)
T 2o57_A 225 GLVTLRTFSRP 235 (297)
T ss_dssp TEEEEEEEECH
T ss_pred CCeEEEEEECc
Confidence 99999987654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=129.71 Aligned_cols=153 Identities=15% Similarity=0.208 Sum_probs=96.7
Q ss_pred hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcC--ccccccceeeeeecCCcccccC---------------
Q 045799 53 YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSH--SEFREERVNAFVCNVVNDDLSR--------------- 115 (231)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~--~~~~~~~~~~~~~D~~~~~~~~--------------- 115 (231)
++.+.++.++..+ ....++.+|||||||+|.++..++.. ..+....+.++++|++..|+..
T Consensus 35 ~~~~~l~~~l~~~--~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~ 112 (292)
T 2aot_A 35 FMDKKLPGIIGRI--GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVK 112 (292)
T ss_dssp HHHHTHHHHSSST--TTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEE
T ss_pred HHHHhchhHHhhc--cCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcce
Confidence 4444555554432 01246679999999999876544311 1111112234778877654320
Q ss_pred -----------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcccccc
Q 045799 116 -----------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMI 178 (231)
Q Consensus 116 -----------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~ 178 (231)
++++++||+|++.+++||+ +++..++++++++|||||.+++............+......+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 2aot_A 113 FAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF 190 (292)
T ss_dssp EEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGS
T ss_pred EEEEecchhhhhhhhccccCCCceeEEEEeeeeeec--CCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhc
Confidence 1347899999999999999 889999999999999999999986544221110011001111
Q ss_pred ccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 179 GDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
. .+.+..+++.+++.++|+++||+++.....
T Consensus 191 ~-------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 221 (292)
T 2aot_A 191 P-------QDDLCQYITSDDLTQMLDNLGLKYECYDLL 221 (292)
T ss_dssp C-------CCTTCCCCCHHHHHHHHHHHTCCEEEEEEC
T ss_pred c-------CCCcccCCCHHHHHHHHHHCCCceEEEEec
Confidence 1 001234578999999999999998875443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-17 Score=123.97 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~~ 130 (231)
.++.+|||||||+|.++..++.... .+++++|+++.++. .++++++||+|++..+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 116 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGA-----SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA 116 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-----SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCC-----CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecc
Confidence 5678999999999999988874411 14556665543321 1445789999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh----hhccccc--cccceEE--------eCCCeEEEeeCH
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK----LLDRNQM--IGDSFYV--------RGDGTCSFYFSE 196 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~----~~~~~~~--~~~~~~~--------~~~~~~~~~~~~ 196 (231)
++|+ +++..++++++++|+|||.+++.+..+....... ....+.. ....++. .........++.
T Consensus 117 l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 194 (243)
T 3bkw_A 117 LHYV--EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTV 194 (243)
T ss_dssp GGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCH
T ss_pred cccc--chHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccH
Confidence 9999 7899999999999999999999865432100000 0000000 0000000 000122345799
Q ss_pred HHHHHHHHHcCceEEEEEEE
Q 045799 197 DFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~~~~~ 216 (231)
+++.++|+++||+++++...
T Consensus 195 ~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 195 GTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCEeeeeccC
Confidence 99999999999999998764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-18 Score=135.34 Aligned_cols=141 Identities=21% Similarity=0.259 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++.... ..+++++|+++.++. .++++++||+|++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNP----DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence 6788999999999999988874311 234556666543321 2456789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh----hhhccccccccceEEeCCCeEEEeeCHHHHHHHH
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV----KLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLF 203 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 203 (231)
..+++|+ .++..+++++.++|+|||.+++.+......... ............. ...+ ...++..++.++|
T Consensus 112 ~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~~~l 185 (276)
T 3mgg_A 112 CFVLEHL--QSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQ--AYMK--GNSLVGRQIYPLL 185 (276)
T ss_dssp ESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHH--HHTT--CCTTGGGGHHHHH
T ss_pred echhhhc--CCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHH--HhcC--CCcchHHHHHHHH
Confidence 9999999 778999999999999999999986443211000 0000000000000 0000 1124567899999
Q ss_pred HHcCceEEEEEEEeeeee
Q 045799 204 LEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 204 ~~~Gf~~~~~~~~~~~~~ 221 (231)
+++||+++++........
T Consensus 186 ~~aGf~~v~~~~~~~~~~ 203 (276)
T 3mgg_A 186 QESGFEKIRVEPRMVYID 203 (276)
T ss_dssp HHTTCEEEEEEEEEEEEC
T ss_pred HHCCCCeEEEeeEEEECC
Confidence 999999999987655443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=127.59 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~~~fD~ii~~~ 129 (231)
.++.+|||||||+|.++..++... ...+++++|+++.++. .+++ ++||+|++..
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~ 117 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKY----PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSAL 117 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHC----TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeC
Confidence 567899999999999999887432 1335666776654321 1223 7999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh--cc------ccccccce--EEeCCCeEEEeeCHHHH
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL--DR------NQMIGDSF--YVRGDGTCSFYFSEDFL 199 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~--~~------~~~~~~~~--~~~~~~~~~~~~~~~~l 199 (231)
+++|+++.+...++++++++|||||.+++.++........... .. ........ .......+...++.+++
T Consensus 118 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (234)
T 3dtn_A 118 SIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQ 197 (234)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHH
Confidence 9999954444579999999999999999998766543211000 00 00000000 00001122346899999
Q ss_pred HHHHHHcCceEEEEEEEe
Q 045799 200 STLFLEAGFSTVDINIHL 217 (231)
Q Consensus 200 ~~~l~~~Gf~~~~~~~~~ 217 (231)
.++|+++||+++++....
T Consensus 198 ~~ll~~aGF~~v~~~~~~ 215 (234)
T 3dtn_A 198 LNWLKEAGFRDVSCIYKY 215 (234)
T ss_dssp HHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHcCCCceeeeeee
Confidence 999999999999886543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=126.39 Aligned_cols=137 Identities=14% Similarity=0.203 Sum_probs=87.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEee-ee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIF-ML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~-~l 131 (231)
.++.+|||+|||+|.++..++... .+++++|+++.++. .++ +++||+|++.. ++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~------~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~ 111 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF------GDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSV 111 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH------SEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGG
T ss_pred CCCCeEEEecccCCHHHHHHHHhC------CcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchH
Confidence 567899999999999998887331 14455565544321 122 57899999654 89
Q ss_pred eccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcc------c-------------c--ccccceEEeC-C-
Q 045799 132 SAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDR------N-------------Q--MIGDSFYVRG-D- 187 (231)
Q Consensus 132 ~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~------~-------------~--~~~~~~~~~~-~- 187 (231)
+|++ +++...++++++++|+|||.+++.++............. + . .....+.... .
T Consensus 112 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T 3bxo_A 112 GYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGK 191 (239)
T ss_dssp GGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCC
Confidence 9985 356789999999999999999998655443210000000 0 0 0000111111 1
Q ss_pred -------CeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 188 -------GTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 188 -------~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
..+..+++.+++.++|+++||+++.+.
T Consensus 192 ~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~ 225 (239)
T 3bxo_A 192 GVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLE 225 (239)
T ss_dssp EEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred cceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeE
Confidence 112356899999999999999877753
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=124.12 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++... ....+++++|+++.++. .++++++||+|++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 112 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMV---GEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFM 112 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHH---TTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEe
Confidence 567899999999999999887331 01234556666543321 1456789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+++|+ +++..+++++.++|+|||.+++.++........ . ....+++.+++.++++++|
T Consensus 113 ~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~------------~~~~~~~~~~~~~~l~~~G 172 (219)
T 3dh0_A 113 AFTFHEL--SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKG------P------------PPEEVYSEWEVGLILEDAG 172 (219)
T ss_dssp ESCGGGC--SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS------C------------CGGGSCCHHHHHHHHHHTT
T ss_pred ehhhhhc--CCHHHHHHHHHHHhCCCeEEEEEEecccccccC------C------------chhcccCHHHHHHHHHHCC
Confidence 9999999 789999999999999999999987665443110 0 0012468999999999999
Q ss_pred ceEEEEEEEe
Q 045799 208 FSTVDINIHL 217 (231)
Q Consensus 208 f~~~~~~~~~ 217 (231)
|++++.....
T Consensus 173 f~~~~~~~~~ 182 (219)
T 3dh0_A 173 IRVGRVVEVG 182 (219)
T ss_dssp CEEEEEEEET
T ss_pred CEEEEEEeeC
Confidence 9999876643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=130.14 Aligned_cols=140 Identities=12% Similarity=0.130 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~ 124 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++. .++ +++||+
T Consensus 81 ~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~ 153 (299)
T 3g2m_A 81 PVSGPVLELAAGMGRLTFPFLDL------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGT 153 (299)
T ss_dssp CCCSCEEEETCTTTTTHHHHHTT------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEE
T ss_pred CCCCcEEEEeccCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCE
Confidence 34459999999999999999844 224455555443321 122 679999
Q ss_pred EEEe-eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-------ccc--ccccc-----------eE
Q 045799 125 VTLI-FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-------RNQ--MIGDS-----------FY 183 (231)
Q Consensus 125 ii~~-~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-------~~~--~~~~~-----------~~ 183 (231)
|++. .+++|+++++...++++++++|+|||.+++..+............ .+. .+... +.
T Consensus 154 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 233 (299)
T 3g2m_A 154 VVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIH 233 (299)
T ss_dssp EEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEE
T ss_pred EEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEE
Confidence 9865 567777655689999999999999999999877665431100000 000 00000 00
Q ss_pred EeC--------CCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 184 VRG--------DGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 184 ~~~--------~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
... ......+++.+++.++|+++||+++++..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 234 PADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp ESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred eccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 000 1122357999999999999999999988765
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=123.89 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=100.5
Q ss_pred HHhhHHHHHHhccCCccc-chh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCc---------------
Q 045799 32 AKKYWDGFYKRHKNKFFK-DRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHS--------------- 94 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~--------------- 94 (231)
..+||+..|......+.. ... .+.+.+..+.. ..++.+|||+|||+|..+..|+...
T Consensus 32 ~~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~ 105 (252)
T 2gb4_A 32 TLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLK------GQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIRE 105 (252)
T ss_dssp CHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHT------TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CHHHHHHHHhcCCCCcccCCCCHHHHHHHHHhcc------CCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 568999998765433321 111 22333332221 1467899999999999999998330
Q ss_pred ---cc--------------------cccceeeeeecCCcccccCCCCC-CCeeEEEEeeeeeccCCCCHHHHHHHHHHhc
Q 045799 95 ---EF--------------------REERVNAFVCNVVNDDLSRNVNP-SSVDVVTLIFMLSAVSPKKMPLILQNIKAVL 150 (231)
Q Consensus 95 ---~~--------------------~~~~~~~~~~D~~~~~~~~~~~~-~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~L 150 (231)
.. ...++++...|+... ++.+ ++||+|++..+++|+++++...+++++.++|
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~L 181 (252)
T 2gb4_A 106 FFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL----PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLL 181 (252)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG----GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTE
T ss_pred HHHhcccccccccccccccccccccCCCceEEEECccccC----CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHc
Confidence 00 012334444444322 2222 7899999999999998778889999999999
Q ss_pred CCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 151 KPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 151 k~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
||||++++.++...... ... ....++.+++.+++.. +|+++.......
T Consensus 182 kpGG~l~l~~~~~~~~~----------~~g---------~~~~~~~~el~~~l~~-~f~v~~~~~~~~ 229 (252)
T 2gb4_A 182 RKEFQYLVAVLSYDPTK----------HAG---------PPFYVPSAELKRLFGT-KCSMQCLEEVDA 229 (252)
T ss_dssp EEEEEEEEEEEECCTTS----------CCC---------SSCCCCHHHHHHHHTT-TEEEEEEEEEEC
T ss_pred CCCeEEEEEEEecCCcc----------CCC---------CCCCCCHHHHHHHhhC-CeEEEEEecccc
Confidence 99999976543321100 000 0123689999999986 699998875443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=130.25 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------------------cCCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------SRNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------~~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... +.+++++|+++.++ ..++++++||+|+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 134 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR-----DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVW 134 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEE
Confidence 577899999999999998887421 23455555554332 1245678999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++|+ .++..++++++++|||||.+++.++................+...+ ....+++.+++.++++++
T Consensus 135 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~a 206 (273)
T 3bus_A 135 ALESLHHM--PDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGG------GVLSLGGIDEYESDVRQA 206 (273)
T ss_dssp EESCTTTS--SCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHH------TCCCCCCHHHHHHHHHHT
T ss_pred EechhhhC--CCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhc------CccCCCCHHHHHHHHHHc
Confidence 99999999 7789999999999999999999876543211000000000000000 012357899999999999
Q ss_pred CceEEEEEEEee
Q 045799 207 GFSTVDINIHLK 218 (231)
Q Consensus 207 Gf~~~~~~~~~~ 218 (231)
||+++++...+.
T Consensus 207 Gf~~~~~~~~~~ 218 (273)
T 3bus_A 207 ELVVTSTVDISA 218 (273)
T ss_dssp TCEEEEEEECHH
T ss_pred CCeEEEEEECcH
Confidence 999998877543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=127.96 Aligned_cols=139 Identities=16% Similarity=0.181 Sum_probs=95.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++. .++ +++||+|++..+++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~ 128 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQS------GAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLH 128 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGG
T ss_pred CCCCEEEEecCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhh
Confidence 56789999999999999988752 346677777655432 122 47899999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh--hhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK--LLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
|+ .++..++++++++|||||.+++..+......... +.......... .........+++.+++.++|+++||++
T Consensus 129 ~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~aGf~~ 204 (279)
T 3ccf_A 129 WV--KEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIH--NPQALNPWYFPSIGEYVNILEKQGFDV 204 (279)
T ss_dssp GC--SCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCC--CGGGGCCCCCCCHHHHHHHHHHHTEEE
T ss_pred hC--cCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCc--cccCcCceeCCCHHHHHHHHHHcCCEE
Confidence 99 7899999999999999999999876554321110 00000000000 000011123578999999999999999
Q ss_pred EEEEEEeeee
Q 045799 211 VDINIHLKQI 220 (231)
Q Consensus 211 ~~~~~~~~~~ 220 (231)
+.+.......
T Consensus 205 ~~~~~~~~~~ 214 (279)
T 3ccf_A 205 TYAALFNRPT 214 (279)
T ss_dssp EEEEEEECCE
T ss_pred EEEEEecccc
Confidence 9887765544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-17 Score=122.89 Aligned_cols=136 Identities=17% Similarity=0.226 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++. .++++++||+|++..+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN------GTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT------TCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhh
Confidence 46789999999999999988754 135666776554321 245668999999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEe----CCCeEEEeeCHHHHHHHHHHcCc
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVR----GDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
|+ .++..+++++.++|+|||.+++..+........... ....+... ....+..+++.+++.++++++||
T Consensus 105 ~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 177 (230)
T 3cc8_A 105 HL--FDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPL-----LAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY 177 (230)
T ss_dssp GS--SCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHH-----HTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred hc--CCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHH-----hcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence 99 778999999999999999999987665433211000 00011000 01122346899999999999999
Q ss_pred eEEEEEEEeee
Q 045799 209 STVDINIHLKQ 219 (231)
Q Consensus 209 ~~~~~~~~~~~ 219 (231)
+++++......
T Consensus 178 ~~~~~~~~~~~ 188 (230)
T 3cc8_A 178 SISKVDRVYVD 188 (230)
T ss_dssp EEEEEEEEECC
T ss_pred eEEEEEecccC
Confidence 99998876554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=126.26 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++. .++++++||+|++.
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 111 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR------GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVV 111 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT------TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEEC
Confidence 56789999999999999988844 224556665543321 14567899999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-----hhhhccccccccceEEeCCCeEEEeeCHHHHHHHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-----VKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLF 203 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 203 (231)
.+++|+ ++...+++++.++|+|||.+++. +...+... ..+......... .......+++.+++.++|
T Consensus 112 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l 183 (263)
T 2yqz_A 112 HLWHLV--PDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGF-----PVERGLHAKRLKEVEEAL 183 (263)
T ss_dssp SCGGGC--TTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTC-----CCCCCHHHHHHHHHHHHH
T ss_pred Cchhhc--CCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCC-----CcccccccCCHHHHHHHH
Confidence 999999 68999999999999999999887 33221000 000000000000 001112357889999999
Q ss_pred HHcCceEEEEEEEeeeee
Q 045799 204 LEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 204 ~~~Gf~~~~~~~~~~~~~ 221 (231)
+++||+++.+....+...
T Consensus 184 ~~~Gf~~~~~~~~~~~~~ 201 (263)
T 2yqz_A 184 RRLGLKPRTREVARWREE 201 (263)
T ss_dssp HHTTCCCEEEEEEEEEEE
T ss_pred HHcCCCcceEEEeeeecC
Confidence 999999888776665443
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-17 Score=127.45 Aligned_cols=121 Identities=16% Similarity=0.252 Sum_probs=85.7
Q ss_pred HHhhHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeee
Q 045799 27 HYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVC 106 (231)
Q Consensus 27 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~ 106 (231)
.++....++|+.++........ .+...+...+. ..++.+|||||||+|.++..++.. +.+++++
T Consensus 22 y~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~------~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gv 85 (293)
T 3thr_A 22 YADGEAARVWQLYIGDTRSRTA----EYKAWLLGLLR------QHGCHRVLDVACGTGVDSIMLVEE------GFSVTSV 85 (293)
T ss_dssp TTTCHHHHHHHHHHTCCSCBCH----HHHHHHHHHHH------HTTCCEEEETTCTTSHHHHHHHHT------TCEEEEE
T ss_pred hcCchHHHHHHHHHhcCcchHH----HHHHHHHHHhc------ccCCCEEEEecCCCCHHHHHHHHC------CCeEEEE
Confidence 3455577889988744433322 22233322332 145689999999999999998854 3367788
Q ss_pred cCCcccccC---------------------------C---CCCCCeeEEEEe-eeeeccCC-----CCHHHHHHHHHHhc
Q 045799 107 NVVNDDLSR---------------------------N---VNPSSVDVVTLI-FMLSAVSP-----KKMPLILQNIKAVL 150 (231)
Q Consensus 107 D~~~~~~~~---------------------------~---~~~~~fD~ii~~-~~l~~~~~-----~~~~~~l~~~~~~L 150 (231)
|+++.++.. + +++++||+|++. ++++|++. ++...++++++++|
T Consensus 86 D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~L 165 (293)
T 3thr_A 86 DASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV 165 (293)
T ss_dssp ESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTE
T ss_pred ECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHc
Confidence 887655421 1 467899999998 89999943 33999999999999
Q ss_pred CCCeEEEEEeccC
Q 045799 151 KPDGYILVCDYAI 163 (231)
Q Consensus 151 k~gG~l~i~~~~~ 163 (231)
||||++++...+.
T Consensus 166 kpgG~l~~~~~~~ 178 (293)
T 3thr_A 166 RPGGLLVIDHRNY 178 (293)
T ss_dssp EEEEEEEEEEECH
T ss_pred CCCeEEEEEeCCH
Confidence 9999999876543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=122.95 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=90.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++ +|||||||+|.++..++.. +.+++++|+++.++. .++++++||+|++.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL------GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI 101 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT------TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred CCC-CEEEECCCCCHhHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE
Confidence 445 9999999999999888744 235566666543321 13456899999995
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
. .|++.++...+++++.++|+|||.+++.++....... . .. .......+++.+++.++|+ ||
T Consensus 102 ~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~-~~----------~~~~~~~~~~~~~l~~~l~--Gf 163 (202)
T 2kw5_A 102 F--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY---N-TG----------GPKDLDLLPKLETLQSELP--SL 163 (202)
T ss_dssp C--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG---T-SC----------CSSSGGGCCCHHHHHHHCS--SS
T ss_pred h--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC---C-CC----------CCCcceeecCHHHHHHHhc--Cc
Confidence 3 4555467899999999999999999998876654321 0 00 0001123689999999998 99
Q ss_pred eEEEEEEEeeeee
Q 045799 209 STVDINIHLKQIK 221 (231)
Q Consensus 209 ~~~~~~~~~~~~~ 221 (231)
+++.+......+.
T Consensus 164 ~v~~~~~~~~~~~ 176 (202)
T 2kw5_A 164 NWLIANNLERNLD 176 (202)
T ss_dssp CEEEEEEEEEECS
T ss_pred eEEEEEEEEeecC
Confidence 9999988777653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-17 Score=130.42 Aligned_cols=142 Identities=15% Similarity=0.264 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCC-CCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNV-NPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~-~~~~fD~i 125 (231)
.++.+|||||||+|.++..++... ..+++++|+++.++. .++ ++++||+|
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAG-----IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-----CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEE
Confidence 667899999999999998876321 113445554433221 133 46799999
Q ss_pred EEeeeeec--cCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh-------------hhc--cccc-cccce--EE-
Q 045799 126 TLIFMLSA--VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK-------------LLD--RNQM-IGDSF--YV- 184 (231)
Q Consensus 126 i~~~~l~~--~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~-------------~~~--~~~~-~~~~~--~~- 184 (231)
++..++|| ...+++..+++++.++|+|||.+++..+......... +.. .... ....+ +.
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99999988 3346788999999999999999999875543221100 000 0000 00111 11
Q ss_pred -eCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 185 -RGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 185 -~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
........+++.+++.++|+++||+++++....
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 112334567899999999999999999987654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=122.23 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++. .+++ ++||+|++.
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~ 108 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCC 108 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEEC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC------CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEc
Confidence 46789999999999999988743 234566666544321 1233 789999999
Q ss_pred e-eeeccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh----hhc-------cccc------cc--cceEEeC-
Q 045799 129 F-MLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK----LLD-------RNQM------IG--DSFYVRG- 186 (231)
Q Consensus 129 ~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~----~~~-------~~~~------~~--~~~~~~~- 186 (231)
. +++|++ ++++..++++++++|+|||.+++............ +.. .... .. ..++...
T Consensus 109 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (246)
T 1y8c_A 109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDG 188 (246)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred CccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecC
Confidence 8 999994 35788999999999999999998654432211000 000 0000 00 0000001
Q ss_pred -------CCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 187 -------DGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 187 -------~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
...+..+++.+++.++|+++||+++++...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 189 EFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp SSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred CcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 112245789999999999999999988543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-17 Score=126.03 Aligned_cols=141 Identities=14% Similarity=0.166 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCC-CCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVN-PSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~-~~~fD~i 125 (231)
.++.+|||||||+|.++..++... .+++++|+++.++.. ++. ...||+|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFF------PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHS------SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhC------CCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEE
Confidence 677899999999999999987331 145566666544321 010 1248999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccc-cccccce-EEeCCCeEEEeeCHHHHHHHH
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN-QMIGDSF-YVRGDGTCSFYFSEDFLSTLF 203 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~l 203 (231)
++..+++|+++++...++++++++|||||++++.++...+.......... ....... .....+.....++.+++.++|
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 99999999976689999999999999999999998776543211100000 0000000 000111122347899999999
Q ss_pred HHcCceEEEEEEEeee
Q 045799 204 LEAGFSTVDINIHLKQ 219 (231)
Q Consensus 204 ~~~Gf~~~~~~~~~~~ 219 (231)
+||++++.......
T Consensus 209 --aGf~~~~~~~~~~~ 222 (245)
T 3ggd_A 209 --PDFEILSQGEGLFQ 222 (245)
T ss_dssp --TTEEEEEEECCBCC
T ss_pred --CCCEEEeccccccc
Confidence 99999997766543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=115.83 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------CCCCCCCeeEEEEeeeeeccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------RNVNPSSVDVVTLIFMLSAVS 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------~~~~~~~fD~ii~~~~l~~~~ 135 (231)
.++.+|||+|||+|.++..++... .+++++|+++.++. .++++++||+|++..+++|+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~v~~~~~d~~~~~~~~D~v~~~~~l~~~- 88 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA------TKLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHDM- 88 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE------EEEEEECSCHHHHHHHHHHCTTSEEESSGGGSCTTCEEEEEEESCSTTC-
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc------CeEEEEeCCHHHHHHHHHhCCCcEEEeCCCCCCCCceEEEEEccchhcc-
Confidence 567899999999999999988542 25667777654421 24567899999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 136 PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 136 ~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
+++..+++++.++|+|||.+++.++........ .. ....++.+++.++++ ||++++...
T Consensus 89 -~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~~------------~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 89 -DDKQHVISEVKRILKDDGRVIIIDWRKENTGIG------PP------------LSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS------SC------------GGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEEcCccccccC------ch------------HhhhcCHHHHHHHHh--CcEEEEccC
Confidence 789999999999999999999987665432210 00 012378999999998 999998866
Q ss_pred Ee
Q 045799 216 HL 217 (231)
Q Consensus 216 ~~ 217 (231)
..
T Consensus 148 ~~ 149 (170)
T 3i9f_A 148 PT 149 (170)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=119.33 Aligned_cols=139 Identities=17% Similarity=0.203 Sum_probs=95.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|..+..++... +.+++++|+++.++. .++++++||+|++.
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 96 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVED-----GYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSY 96 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHT-----TCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEEC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEc
Confidence 567899999999999855444211 234556666543321 14567899999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEE---eCCCeEEEeeCHHHHHHHHHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYV---RGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~ 205 (231)
.+++|++++++..++++++++|+|||.+++.++...+.... ....+....+. ........+++.+++.+++.+
T Consensus 97 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 172 (209)
T 2p8j_A 97 GTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYN----KGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKD 172 (209)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTT----CSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTT
T ss_pred ChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhcc----chhhhccccceeccCCCceeEEecCHHHHHHHHhh
Confidence 99999976788999999999999999999998776543211 01112222221 122334568999999999999
Q ss_pred cCceEEEEEEEee
Q 045799 206 AGFSTVDINIHLK 218 (231)
Q Consensus 206 ~Gf~~~~~~~~~~ 218 (231)
+||...+.....+
T Consensus 173 ~g~~~~~~~~~~~ 185 (209)
T 2p8j_A 173 MKVLFKEDRVVER 185 (209)
T ss_dssp SEEEEEEEEEEEE
T ss_pred cCceeeeeeeeeh
Confidence 9998877655443
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=132.46 Aligned_cols=128 Identities=20% Similarity=0.322 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||||||+|.++..++.. +.+++++|++..++.. ++++++||+|++.+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~------g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~ 179 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA------GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAAN 179 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT------TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHHc------CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECC
Confidence 56789999999999999988754 4478899998765421 22358999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+++|+ +++..++++++++|||||++++........... . .+...+ ..+..+++.+++.++++++||+
T Consensus 180 vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~----~~~~~~-----~~~~~~~s~~~l~~ll~~aGf~ 246 (416)
T 4e2x_A 180 TLCHI--PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK--T----SFDQIF-----DEHFFLFSATSVQGMAQRCGFE 246 (416)
T ss_dssp CGGGC--TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHH--T----CGGGCS-----TTCCEECCHHHHHHHHHHTTEE
T ss_pred hHHhc--CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhh--c----chhhhh-----hhhhhcCCHHHHHHHHHHcCCE
Confidence 99999 789999999999999999999976543322110 0 000000 1123468999999999999999
Q ss_pred EEEEEEEe
Q 045799 210 TVDINIHL 217 (231)
Q Consensus 210 ~~~~~~~~ 217 (231)
++++...+
T Consensus 247 ~~~~~~~~ 254 (416)
T 4e2x_A 247 LVDVQRLP 254 (416)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcc
Confidence 99988754
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=122.55 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... ..+++++|+++.++. .++++++||+|+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 119 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHV-----TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW 119 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTC-----SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEE
Confidence 678999999999999999988541 235566666554321 144678999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
+..+++|+ ++..+++++.++|||||.+++.+........ ..... .+... ...+.+..++.+++++
T Consensus 120 ~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~l~~ 185 (267)
T 3kkz_A 120 SEGAIYNI---GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEIND---FWMDA--------YPEIDTIPNQVAKIHK 185 (267)
T ss_dssp ESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHH---HHHHH--------CTTCEEHHHHHHHHHH
T ss_pred EcCCceec---CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHH---HHHHh--------CCCCCCHHHHHHHHHH
Confidence 99999999 4789999999999999999998764321110 00000 00000 0124688999999999
Q ss_pred cCceEEEEEEEe
Q 045799 206 AGFSTVDINIHL 217 (231)
Q Consensus 206 ~Gf~~~~~~~~~ 217 (231)
+||+++++...+
T Consensus 186 aGf~~v~~~~~~ 197 (267)
T 3kkz_A 186 AGYLPVATFILP 197 (267)
T ss_dssp TTEEEEEEEECC
T ss_pred CCCEEEEEEECC
Confidence 999999886654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=124.28 Aligned_cols=137 Identities=16% Similarity=0.195 Sum_probs=94.3
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~ 127 (231)
..++.+|||||||+|.++..++... +.+++++|+++.++.. .++ ++||+|++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~fD~v~~ 135 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKY-----DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EPVDRIVS 135 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CCCSEEEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CCeeEEEE
Confidence 4677899999999999998887321 2255666665443210 223 78999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh---------ccccccccceEEeCCCeEEEeeCHHH
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL---------DRNQMIGDSFYVRGDGTCSFYFSEDF 198 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
..+++|++++++..+++++.++|||||.+++.++........... .....+....+ .+ ..+++.++
T Consensus 136 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~s~~~ 210 (287)
T 1kpg_A 136 IGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF---PG--GRLPSIPM 210 (287)
T ss_dssp ESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS---TT--CCCCCHHH
T ss_pred eCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeC---CC--CCCCCHHH
Confidence 999999987889999999999999999999988766543221000 00000000000 00 12468999
Q ss_pred HHHHHHHcCceEEEEEEEe
Q 045799 199 LSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~~~~ 217 (231)
+.++++++||+++++...+
T Consensus 211 ~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHhCCcEEEEEEeCc
Confidence 9999999999999987643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=121.29 Aligned_cols=137 Identities=12% Similarity=-0.002 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||||||+|.++..++... . ..+++++|+++.++. .+ ++++||+|++..+++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~--~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 106 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRY--G--VNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQ 106 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHH--C--TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhC--C--CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchh
Confidence 567899999999999998887431 1 224566666654421 12 467899999999999
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc---cccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD---RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
|+ +++..++++++++|+|||.+++.++............ ....+..... ........+++.+++.++|+++||+
T Consensus 107 ~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~ 183 (259)
T 2p35_A 107 WV--PDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFS-GGGLRRKPLPPPSDYFNALSPKSSR 183 (259)
T ss_dssp GS--TTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC--------CCCCCHHHHHHHHGGGEEE
T ss_pred hC--CCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhc-cccccccCCCCHHHHHHHHHhcCCc
Confidence 99 7899999999999999999999875443211100000 0000100000 0001123468999999999999998
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
+.....
T Consensus 184 v~~~~~ 189 (259)
T 2p35_A 184 VDVWHT 189 (259)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 654443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=117.63 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++.... .+++++|+++.++. .++++++||+|+
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 119 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVK-----GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIW 119 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCC-----SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCC-----CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEE
Confidence 6678999999999999998874321 14455555443321 145678999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
+..+++|+ ++..+++++.++|+|||++++.+........ ..... .+...+ ..+.+..++.+++++
T Consensus 120 ~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~l~~ 185 (257)
T 3f4k_A 120 SEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIED---FWMDAY--------PEISVIPTCIDKMER 185 (257)
T ss_dssp EESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHH---HHHHHC--------TTCCBHHHHHHHHHH
T ss_pred ecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHH---HHHHhC--------CCCCCHHHHHHHHHH
Confidence 99999998 4889999999999999999998754221110 00000 000000 114688999999999
Q ss_pred cCceEEEEEEEe
Q 045799 206 AGFSTVDINIHL 217 (231)
Q Consensus 206 ~Gf~~~~~~~~~ 217 (231)
+||++++....+
T Consensus 186 aGf~~v~~~~~~ 197 (257)
T 3f4k_A 186 AGYTPTAHFILP 197 (257)
T ss_dssp TTEEEEEEEECC
T ss_pred CCCeEEEEEECC
Confidence 999999976544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=114.11 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc--------cCCCCCCCeeEEEEeeeeeccCCCCHHHH
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL--------SRNVNPSSVDVVTLIFMLSAVSPKKMPLI 142 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~--------~~~~~~~~fD~ii~~~~l~~~~~~~~~~~ 142 (231)
.++.+|||||||+|.++..++ .+++++|++...+ ..++++++||+|++..++| . .++..+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~---------~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~--~~~~~~ 133 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR---------NPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-G--TNIRDF 133 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC---------SCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCC-S--SCHHHH
T ss_pred CCCCeEEEECCcCCHHHHHhh---------ccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhcc-c--cCHHHH
Confidence 566899999999999988774 1344555543211 1245678999999999996 4 688999
Q ss_pred HHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 143 LQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 143 l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
++++.++|+|||.+++.++... +.+.+++.++++++||+++....
T Consensus 134 l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 134 LEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp HHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHCCCEEEEEec
Confidence 9999999999999999864320 12778999999999999988654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-16 Score=121.23 Aligned_cols=85 Identities=16% Similarity=0.314 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~~~l~~ 133 (231)
+.+.+|||||||+|..+..|+.. ..+++++|++..|+.. ++++++||+|++..++||
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~------~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~ 111 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEF------FERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHW 111 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTT------CSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTT
T ss_pred CCCCCEEEEcCCCCHHHHHHHHh------CCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhH
Confidence 45679999999999999999854 2366788888776532 568899999999999988
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 134 ~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
+ ++..++++++|+|||||++++..+...
T Consensus 112 ~---~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 112 F---DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp C---CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred h---hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 8 367899999999999999998876554
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=115.98 Aligned_cols=120 Identities=19% Similarity=0.276 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++. .++ +++||+|++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~ 103 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN------GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILS 103 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEE
Confidence 45679999999999999988744 224455555443221 133 679999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+++|+++++...+++++.++|+|||.+++.+......... . ......++.+++.+++++
T Consensus 104 ~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~---------~--------~~~~~~~~~~~l~~~~~~-- 164 (199)
T 2xvm_A 104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---------T--------VGFPFAFKEGELRRYYEG-- 164 (199)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---------C--------SCCSCCBCTTHHHHHTTT--
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC---------C--------CCCCCccCHHHHHHHhcC--
Confidence 999999976689999999999999999988865443221100 0 011235788999999976
Q ss_pred ceEEEEEEE
Q 045799 208 FSTVDINIH 216 (231)
Q Consensus 208 f~~~~~~~~ 216 (231)
|++++....
T Consensus 165 f~~~~~~~~ 173 (199)
T 2xvm_A 165 WERVKYNED 173 (199)
T ss_dssp SEEEEEECC
T ss_pred CeEEEeccc
Confidence 999988654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-16 Score=121.79 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|..+..++... +.+++++|+++.++. .++ +++||+|+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~ 108 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDH-----GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAA 108 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHT-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEE
Confidence 677899999999999998887332 124456666543321 123 67899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
+..+++|+ .++..++++++++|||||.+++.+........ ..+.. .+. ......+++..++.++|++
T Consensus 109 ~~~~~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~l~~ 176 (256)
T 1nkv_A 109 CVGATWIA--GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ---ACG-------VSSTSDFLTLPGLVGAFDD 176 (256)
T ss_dssp EESCGGGT--SSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH---TTT-------CSCGGGSCCHHHHHHHHHT
T ss_pred ECCChHhc--CCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHH---HHh-------cccccccCCHHHHHHHHHH
Confidence 99999999 67899999999999999999998754322110 00000 000 0111235789999999999
Q ss_pred cCceEEEEEE
Q 045799 206 AGFSTVDINI 215 (231)
Q Consensus 206 ~Gf~~~~~~~ 215 (231)
+||+++++..
T Consensus 177 aGf~~~~~~~ 186 (256)
T 1nkv_A 177 LGYDVVEMVL 186 (256)
T ss_dssp TTBCCCEEEE
T ss_pred CCCeeEEEEe
Confidence 9999988654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-16 Score=121.92 Aligned_cols=138 Identities=15% Similarity=0.191 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~ 127 (231)
..++.+|||||||+|.++..++... +.+++++|+++.++.. .+ +++||+|++
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD~v~~ 143 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEY-----DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVDRIVS 143 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCSEEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCccEEEE
Confidence 3678899999999999999887431 1356777776654321 22 689999999
Q ss_pred eeeeeccC-------CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccc---------cccccceEEeCCCeEE
Q 045799 128 IFMLSAVS-------PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN---------QMIGDSFYVRGDGTCS 191 (231)
Q Consensus 128 ~~~l~~~~-------~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 191 (231)
..+++|++ .++...+++++.++|||||.+++.++.............. .-+....+ .+ .
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~--~ 218 (302)
T 3hem_A 144 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF---PG--G 218 (302)
T ss_dssp ESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC---TT--C
T ss_pred cchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC---CC--C
Confidence 99999994 3456899999999999999999988776644321111000 00000000 00 1
Q ss_pred EeeCHHHHHHHHHHcCceEEEEEEEee
Q 045799 192 FYFSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 192 ~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
.+.+.+++.++++++||+++++...+.
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 246889999999999999999876543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=119.07 Aligned_cols=142 Identities=13% Similarity=0.191 Sum_probs=92.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------------------ 114 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------------------ 114 (231)
+++.+|||||||+|..+..++... ..+++++|+++.++.
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~-----~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l 121 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGE-----IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSV 121 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcC-----CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhh
Confidence 457899999999998777665321 124566666654432
Q ss_pred -CCCCCCCeeEEEEeeeeecc-CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhh----cccc-ccccc------
Q 045799 115 -RNVNPSSVDVVTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLL----DRNQ-MIGDS------ 181 (231)
Q Consensus 115 -~~~~~~~fD~ii~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~----~~~~-~~~~~------ 181 (231)
.++++++||+|+|.+++||+ ..++...++++++++|||||++++.++........... .... ...+.
T Consensus 122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 201 (302)
T 2vdw_A 122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEK 201 (302)
T ss_dssp HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECE
T ss_pred hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecc
Confidence 12356799999999999985 34567899999999999999999887654322211000 0000 00000
Q ss_pred ----e---EE-e--CCCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 182 ----F---YV-R--GDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 182 ----~---~~-~--~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
. +. . ......++++..++.++++++||++++.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~ 247 (302)
T 2vdw_A 202 IADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFA 247 (302)
T ss_dssp EETTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHH
T ss_pred ccccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChH
Confidence 0 10 0 12223457888999999999999999986544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-16 Score=118.71 Aligned_cols=118 Identities=20% Similarity=0.147 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccce-eeeeecCCccccc------------------CCCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERV-NAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~-~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l 131 (231)
.++.+|||+|||+|.++..+ +. +++++|+++.++. .++++++||+|++..++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL---------PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTL 105 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC---------CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred CCCCeEEEECCCCCHhHHhC---------CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence 36789999999999988776 12 4556666543321 24567899999999999
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
+|+ +++..+++++.++|||||.+++.++.............. .... ....+..+++.+++.++|+ |
T Consensus 106 ~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 106 EFV--EDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLG-EKGV-----LPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp TTC--SCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHH-HTTC-----TTGGGCCCCCHHHHHHHHC--S
T ss_pred hhc--CCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHh-hccC-----ccccccccCCHHHHHHHhc--C
Confidence 999 789999999999999999999988766543211111000 0000 0011234689999999998 7
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-17 Score=121.55 Aligned_cols=122 Identities=9% Similarity=0.069 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------------------C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------------------R 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------------------~ 115 (231)
.++.+|||+|||+|..+..|+.. +.+++++|+++.|+. .
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 94 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL 94 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence 56789999999999999998732 224455555543321 1
Q ss_pred CCCC-CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEee
Q 045799 116 NVNP-SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYF 194 (231)
Q Consensus 116 ~~~~-~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (231)
++.+ ++||+|++..+++|+++++...++++++++|||||++++........ .... ....+
T Consensus 95 ~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~----------~~~~---------~~~~~ 155 (203)
T 1pjz_A 95 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA----------LLEG---------PPFSV 155 (203)
T ss_dssp THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS----------SSSS---------CCCCC
T ss_pred CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc----------ccCC---------CCCCC
Confidence 2222 68999999999999976667789999999999999855443222110 0000 01236
Q ss_pred CHHHHHHHHHHcCceEEEEEEEee
Q 045799 195 SEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 195 ~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
+.+++.+++.+ ||+++.+.....
T Consensus 156 ~~~el~~~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 156 PQTWLHRVMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp CHHHHHHTSCS-SEEEEEEEESSC
T ss_pred CHHHHHHHhcC-CcEEEEeccccc
Confidence 88999999988 999988766443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-16 Score=123.50 Aligned_cols=133 Identities=11% Similarity=0.016 Sum_probs=92.9
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~i 125 (231)
..++.+|||||||+|.++..++... +.+++++|+++.++. .++++++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-----GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEE
Confidence 3678899999999999999887321 124455555543321 14567899999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
++..+++|+ + +..+++++.++|||||.+++.++......... ......+...+. ..+++.+++.++|++
T Consensus 190 ~~~~~l~~~--~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~s~~~~~~~l~~ 258 (312)
T 3vc1_A 190 WNNESTMYV--D-LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP-SKWVSQINAHFE-------CNIHSRREYLRAMAD 258 (312)
T ss_dssp EEESCGGGS--C-HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC-CHHHHHHHHHHT-------CCCCBHHHHHHHHHT
T ss_pred EECCchhhC--C-HHHHHHHHHHHcCCCcEEEEEEccccccccch-hHHHHHHHhhhc-------CCCCCHHHHHHHHHH
Confidence 999999999 3 99999999999999999999876554422000 000000000000 125789999999999
Q ss_pred cCceEEEEEEEee
Q 045799 206 AGFSTVDINIHLK 218 (231)
Q Consensus 206 ~Gf~~~~~~~~~~ 218 (231)
+||+++++...+.
T Consensus 259 aGf~~~~~~~~~~ 271 (312)
T 3vc1_A 259 NRLVPHTIVDLTP 271 (312)
T ss_dssp TTEEEEEEEECHH
T ss_pred CCCEEEEEEeCCH
Confidence 9999999887653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-16 Score=117.22 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=85.4
Q ss_pred HHhhHHHHHHhccC----CcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeec
Q 045799 32 AKKYWDGFYKRHKN----KFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCN 107 (231)
Q Consensus 32 ~~~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D 107 (231)
..+||+.+|..... .++.....+...+...+ .++.+|||+|||+|.++..++.... .+++++|
T Consensus 6 ~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~vLdiGcG~G~~~~~l~~~~~-----~~v~~~D 72 (215)
T 2pxx_A 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL--------RPEDRILVLGCGNSALSYELFLGGF-----PNVTSVD 72 (215)
T ss_dssp CHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGC--------CTTCCEEEETCTTCSHHHHHHHTTC-----CCEEEEE
T ss_pred chhHHHHHhccCCCCCCcccccCHHHHHHHHHHhc--------CCCCeEEEECCCCcHHHHHHHHcCC-----CcEEEEe
Confidence 45799999877652 23333334444444333 6678999999999999998874411 0345555
Q ss_pred CCccccc---------------------CCCCCCCeeEEEEeeeeeccC-------------CCCHHHHHHHHHHhcCCC
Q 045799 108 VVNDDLS---------------------RNVNPSSVDVVTLIFMLSAVS-------------PKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 108 ~~~~~~~---------------------~~~~~~~fD~ii~~~~l~~~~-------------~~~~~~~l~~~~~~Lk~g 153 (231)
+++.++. .++++++||+|++..+++++. .++...+++++.++|+||
T Consensus 73 ~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 152 (215)
T 2pxx_A 73 YSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG 152 (215)
T ss_dssp SCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE
T ss_pred CCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC
Confidence 5433221 145678999999999988773 236689999999999999
Q ss_pred eEEEEEeccCCchh
Q 045799 154 GYILVCDYAIGDFA 167 (231)
Q Consensus 154 G~l~i~~~~~~~~~ 167 (231)
|.+++.++..++..
T Consensus 153 G~li~~~~~~~~~~ 166 (215)
T 2pxx_A 153 GRFISMTSAAPHFR 166 (215)
T ss_dssp EEEEEEESCCHHHH
T ss_pred CEEEEEeCCCcHHH
Confidence 99999987765443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-16 Score=128.15 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=91.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-c-------------------------------ccccceeeeeecCCcccc--cCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-E-------------------------------FREERVNAFVCNVVNDDL--SRN 116 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-~-------------------------------~~~~~~~~~~~D~~~~~~--~~~ 116 (231)
.++.+|||||||+|.++..++... . +...++.+...|+..... ..+
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 577899999999999998887321 0 000234444444432110 015
Q ss_pred CCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCH
Q 045799 117 VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSE 196 (231)
Q Consensus 117 ~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (231)
+++++||+|++..+++|+ .++..++++++++|||||.+++.++................... .....++.
T Consensus 162 ~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 231 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLS--TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGE--------CLGGALYL 231 (383)
T ss_dssp CCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHT--------TCTTCCBH
T ss_pred CCCCCEEEEEEccchhcC--CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhc--------ccccCCCH
Confidence 677899999999999999 77999999999999999999998765543211111100000000 00124678
Q ss_pred HHHHHHHHHcCceEEEEEEEeee
Q 045799 197 DFLSTLFLEAGFSTVDINIHLKQ 219 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~~~~~~~~ 219 (231)
+++.++|+++||+++++......
T Consensus 232 ~~~~~ll~~aGF~~v~~~~~~~~ 254 (383)
T 4fsd_A 232 EDFRRLVAEAGFRDVRLVSVGPV 254 (383)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEecccc
Confidence 99999999999998876654433
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=115.03 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------------CCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------------RNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------------~~~~~~~f 122 (231)
.++.+|||||||+|.++..++.... ..+++++|+++.++. .++++++|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 103 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS----FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGY 103 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT----CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTC
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCC
Confidence 4568999999999999999884321 124455555543321 12345789
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHH--
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLS-- 200 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 200 (231)
|+|++..+++|+++++...++++++++|||||++++......+... ..+.... .....+...++.+++.
T Consensus 104 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~l~~~ 174 (219)
T 3jwg_A 104 DAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHY-------GNLFEGN--LRHRDHRFEWTRKEFQTW 174 (219)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCC-------CCT-------GGGCCTTSBCHHHHHHH
T ss_pred CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhh-------cccCccc--ccccCceeeecHHHHHHH
Confidence 9999999999995445689999999999999976655332211110 0000000 0011112347888888
Q ss_pred --HHHHHcCceEEEEE
Q 045799 201 --TLFLEAGFSTVDIN 214 (231)
Q Consensus 201 --~~l~~~Gf~~~~~~ 214 (231)
++++++||++....
T Consensus 175 ~~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 175 AVKVAEKYGYSVRFLQ 190 (219)
T ss_dssp HHHHHHHHTEEEEEEE
T ss_pred HHHHHHHCCcEEEEEe
Confidence 88899999887654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-16 Score=116.64 Aligned_cols=130 Identities=13% Similarity=0.145 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------------CCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------------RNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------------~~~~~~~f 122 (231)
.++.+|||||||+|.++..++.... ..+++++|+++.++. .+.++++|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 103 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSF----FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGY 103 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTT----CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSC
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCC----CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCc
Confidence 4568999999999999999884321 124455555543321 12234789
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHH--
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLS-- 200 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 200 (231)
|+|++..+++|+++++...++++++++|||||++++......+.. + ..+.... .....+...++.+++.
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~---~----~~~~~~~--~~~~~~~~~~~~~~l~~~ 174 (217)
T 3jwh_A 104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVK---F----ANLPAGK--LRHKDHRFEWTRSQFQNW 174 (217)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHH---T----C-------------CCSCBCHHHHHHH
T ss_pred CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchh---h----ccccccc--ccccccccccCHHHHHHH
Confidence 999999999999554568999999999999997776543211110 0 0000000 0011122357888988
Q ss_pred --HHHHHcCceEEEE
Q 045799 201 --TLFLEAGFSTVDI 213 (231)
Q Consensus 201 --~~l~~~Gf~~~~~ 213 (231)
++++++||+++..
T Consensus 175 ~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 175 ANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHHSSEEEEEC
T ss_pred HHHHHHHcCceEEEE
Confidence 8999999998765
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=121.28 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=95.1
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~ 127 (231)
..++.+|||||||+|.++..++... +.+++++|+++.++.. .+ +++||+|++
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD~v~~ 161 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-AEPVDRIVS 161 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-CCCCSEEEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-CCCcCEEEE
Confidence 3678899999999999998887331 2356677766544321 12 268999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc---------cccccccceEEeCCCeEEEeeCHHH
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD---------RNQMIGDSFYVRGDGTCSFYFSEDF 198 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
..+++|++.+++..+++++.++|||||.+++.++............ ....+....+ .+ ..+++.++
T Consensus 162 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~s~~~ 236 (318)
T 2fk8_A 162 IEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIF---PG--GRLPSTEM 236 (318)
T ss_dssp ESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTS---TT--CCCCCHHH
T ss_pred eChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcC---CC--CcCCCHHH
Confidence 9999999877899999999999999999999887765533210000 0000000000 00 12468999
Q ss_pred HHHHHHHcCceEEEEEEEe
Q 045799 199 LSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~~~~ 217 (231)
+.++++++||+++++....
T Consensus 237 ~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 237 MVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHTTCBCCCCEECH
T ss_pred HHHHHHhCCCEEEEEEecc
Confidence 9999999999999876643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=119.47 Aligned_cols=139 Identities=15% Similarity=0.042 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|..+..++... ....+++++|+++.++. .+++ ++||+|+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~ 192 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSA---CPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLT 192 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTT---CTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEE
Confidence 678899999999999998885211 11335566666544321 1334 8999999
Q ss_pred EeeeeeccCCCCHH---HHHHHHHHhcCCCeEEEEEeccCCchhhhhhhcccccccc-------c-eEEeCCCeEEEeeC
Q 045799 127 LIFMLSAVSPKKMP---LILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGD-------S-FYVRGDGTCSFYFS 195 (231)
Q Consensus 127 ~~~~l~~~~~~~~~---~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~ 195 (231)
+..+++|++ +.. .++++++++|||||++++.++................... . +..........+++
T Consensus 193 ~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
T 3ocj_A 193 SNGLNIYEP--DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRT 270 (305)
T ss_dssp CCSSGGGCC--CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred ECChhhhcC--CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCC
Confidence 999999994 444 4899999999999999998766543221111000000000 0 00000111124579
Q ss_pred HHHHHHHHHHcCceEEEEEE
Q 045799 196 EDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 196 ~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+++.++|+++||+++++..
T Consensus 271 ~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 271 HAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEc
Confidence 99999999999999998874
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-16 Score=121.43 Aligned_cols=139 Identities=13% Similarity=0.083 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|.++..++.... .+.+++++|+++.++. .++ +++||+|++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~ 96 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLP---EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICH 96 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSC---TTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEEC
Confidence 6778999999999999998874321 1245677777655431 123 4689999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh--------hhhhccccccccceEEeCCCeEEEeeCHHHHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ--------VKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLS 200 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (231)
.+++|+ .++..++++++++|||||.+++.++....... .........+...+..........+.+..++.
T Consensus 97 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 97 AFLLHM--TTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp SCGGGC--SSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred ChhhcC--CCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 999999 78999999999999999999998766110000 00000000000000000000001234566899
Q ss_pred HHHHHcCceEEEEEE
Q 045799 201 TLFLEAGFSTVDINI 215 (231)
Q Consensus 201 ~~l~~~Gf~~~~~~~ 215 (231)
++|+++||+.+++..
T Consensus 175 ~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 175 IYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHcCCCeEEEEE
Confidence 999999999988754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=117.73 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc------cc---------------------------cCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND------DL---------------------------SRNV 117 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~------~~---------------------------~~~~ 117 (231)
.++.+|||||||+|.++..++.... ...+++++|+++. ++ ..++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g---~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 118 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVG---SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPI 118 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC---TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGG
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCC
Confidence 6778999999999999988874310 1135566666543 11 1123
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccc----eEEeCCCeEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDS----FYVRGDGTCSFY 193 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 193 (231)
++++||+|++..+++|+ .+...+++.+.++++|||.+++.++................+... ...........+
T Consensus 119 ~~~~fD~v~~~~~l~~~--~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (275)
T 3bkx_A 119 ADQHFDRVVLAHSLWYF--ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTL 196 (275)
T ss_dssp TTCCCSEEEEESCGGGS--SCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCC
T ss_pred CCCCEEEEEEccchhhC--CCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccccccc
Confidence 56789999999999999 667778888888888899999988766432111000000000000 000011222346
Q ss_pred eCHHHHHHHHHHcCceEEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
++.+++.++++++||+++++...
T Consensus 197 ~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 197 ITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCHHHHHHHHHHHTCEEEECCCB
T ss_pred CCHHHHHHHHHHCCCeeEEEEEe
Confidence 89999999999999999988765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-15 Score=114.66 Aligned_cols=116 Identities=17% Similarity=0.346 Sum_probs=75.8
Q ss_pred HHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc
Q 045799 32 AKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND 111 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~ 111 (231)
.+.||+..+............++...+.... ..++.+|||+|||+|.++..++.. +.+++++|+++.
T Consensus 8 ~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~ 74 (252)
T 1wzn_A 8 LAEYYDTIYRRRIERVKAEIDFVEEIFKEDA-------KREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEE 74 (252)
T ss_dssp TGGGHHHHTHHHHHTHHHHHHHHHHHHHHTC-------SSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhc-------ccCCCEEEEeCCCCCHHHHHHHHC------CCeEEEEECCHH
Confidence 3467777664432222222223333333222 255689999999999999988744 235667776654
Q ss_pred cccC----------------------CCCCCCeeEEEEee-eeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 112 DLSR----------------------NVNPSSVDVVTLIF-MLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 112 ~~~~----------------------~~~~~~fD~ii~~~-~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++.. ++ .++||+|++.. .++|++.++...++++++++|+|||.+++...
T Consensus 75 ~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 75 MLRVARRKAKERNLKIEFLQGDVLEIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCGGGCCC-CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECChhhccc-CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 4321 22 36899999874 46666556788999999999999999987543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-15 Score=109.22 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEe-eee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLI-FML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~-~~l 131 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++. .++++++||+|++. .++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~ 118 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ------GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVM 118 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCG
T ss_pred cCCCeEEEECCCCCHHHHHHHHC------CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHH
Confidence 56789999999999999988744 225566666543321 13456899999998 789
Q ss_pred eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEE
Q 045799 132 SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTV 211 (231)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 211 (231)
+|+++++...+++++.++|+|||.+++...... .++.+++.++++++||+++
T Consensus 119 ~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~ 170 (195)
T 3cgg_A 119 GFLAEDGREPALANIHRALGADGRAVIGFGAGR----------------------------GWVFGDFLEVAERVGLELE 170 (195)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS----------------------------SCCHHHHHHHHHHHTEEEE
T ss_pred hhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC----------------------------CcCHHHHHHHHHHcCCEEe
Confidence 998666778999999999999999998642210 1578899999999999998
Q ss_pred EEEE
Q 045799 212 DINI 215 (231)
Q Consensus 212 ~~~~ 215 (231)
++..
T Consensus 171 ~~~~ 174 (195)
T 3cgg_A 171 NAFE 174 (195)
T ss_dssp EEES
T ss_pred eeec
Confidence 8754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-15 Score=113.40 Aligned_cols=137 Identities=16% Similarity=0.242 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.. .+++++|+++.++. .+++ ++||+|++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~-------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~ 103 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH-------YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITIL 103 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT-------SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEEC
T ss_pred CCCCeEEEecCCCCHHHHHHhhC-------CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEe
Confidence 55689999999999999888744 24556666543321 1223 789999998
Q ss_pred e-eeeccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh----hhhc-------cccc----------cccceEEe
Q 045799 129 F-MLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV----KLLD-------RNQM----------IGDSFYVR 185 (231)
Q Consensus 129 ~-~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~----~~~~-------~~~~----------~~~~~~~~ 185 (231)
. +++|+. +++...+++++.++|+|||.+++....+...... .+.. .+.. ....++..
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (243)
T 3d2l_A 104 CDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIE 183 (243)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEE
T ss_pred CCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEE
Confidence 6 899983 4567889999999999999999865433211100 0000 0000 00001111
Q ss_pred -CC--------CeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 186 -GD--------GTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 186 -~~--------~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.. ..+..+++.+++.++|+++||+++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 222 (243)
T 3d2l_A 184 GEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTG 222 (243)
T ss_dssp CTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEec
Confidence 11 1123578999999999999999998753
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-15 Score=120.99 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc-----------------------cccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF-----------------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~-----------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
.+..+|||||||+|..+..++....- -..++++...|+. .+++. +||+|++
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-----~~~p~-~~D~v~~ 241 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF-----DPLPA-GAGGYVL 241 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-----SCCCC-SCSEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC-----CCCCC-CCcEEEE
Confidence 45689999999999999888732110 0012334444443 12333 8999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
.+++||+++++...+++++++.|+|||++++.+...++....... ........ ....++.++|.++|+++|
T Consensus 242 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~------d~~~~~~~---~~~~~t~~e~~~ll~~aG 312 (332)
T 3i53_A 242 SAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGM------DLRMLTYF---GGKERSLAELGELAAQAG 312 (332)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHH------HHHHHHHH---SCCCCCHHHHHHHHHHTT
T ss_pred ehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHH------HHHHHhhC---CCCCCCHHHHHHHHHHCC
Confidence 999999965557899999999999999999988665542100000 00000000 012468999999999999
Q ss_pred ceEEEEEEEe
Q 045799 208 FSTVDINIHL 217 (231)
Q Consensus 208 f~~~~~~~~~ 217 (231)
|+++++...+
T Consensus 313 f~~~~~~~~~ 322 (332)
T 3i53_A 313 LAVRAAHPIS 322 (332)
T ss_dssp EEEEEEEECS
T ss_pred CEEEEEEECC
Confidence 9999987644
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-15 Score=118.77 Aligned_cols=132 Identities=19% Similarity=0.180 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||||||+|..+..++.... ....++++...|+. .+++ +||+|++.+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~-----~~~p--~~D~v~~~~ 255 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL-----REVP--HADVHVLKR 255 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTT-----TCCC--CCSEEEEES
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCC-----CCCC--CCcEEEEeh
Confidence 5678999999999999998873211 00112333444442 1233 899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
++||+++++...+++++++.|||||++++.+...++........ ....... ...+ ...++.++|.++|+++||+
T Consensus 256 vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~---~~d~~~~-~~~~--~~~~t~~e~~~ll~~aGf~ 329 (348)
T 3lst_A 256 ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSK---EMDFMML-AART--GQERTAAELEPLFTAAGLR 329 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHH---HHHHHHH-HTTS--CCCCBHHHHHHHHHHTTEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhh---hcChhhh-hcCC--CcCCCHHHHHHHHHHCCCc
Confidence 99999654557999999999999999999886554331110000 0000000 0000 1246899999999999999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
++++..
T Consensus 330 ~~~~~~ 335 (348)
T 3lst_A 330 LDRVVG 335 (348)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 998865
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=110.05 Aligned_cols=87 Identities=20% Similarity=0.350 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.... +++++|+++.++. .++++++||+|++.
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~------~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 110 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF------EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFI 110 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC------EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC------EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEc
Confidence 4478999999999999988874311 4445555433221 13456799999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
.++++...++...++++++++|+|||.+++.++..
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 111 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 99444433678899999999999999999987653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-15 Score=120.92 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc-----------------------cccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF-----------------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~-----------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
....+|||||||+|.++..++....- ...++++...|+..... +++ ++||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~p-~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDV--PFP-TGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC--CCC-CCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCC--CCC-CCcCEEEE
Confidence 35689999999999999988732110 00234444444432210 233 68999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..++|++++++...+++++++.|+|||.+++.+...++................+. .........++.++|.++|+++|
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~AG 333 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFT-AMANGNSKMFHSDDLIRCIENAG 333 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHH-HSSCSSCCSCCHHHHHHHHHTTT
T ss_pred echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHH-hhhCCCCcccCHHHHHHHHHHcC
Confidence 99999997666778999999999999999998865544221100000000000000 00000112468999999999999
Q ss_pred ceEEEEEE
Q 045799 208 FSTVDINI 215 (231)
Q Consensus 208 f~~~~~~~ 215 (231)
|+++++..
T Consensus 334 f~~v~~~~ 341 (363)
T 3dp7_A 334 LEVEEIQD 341 (363)
T ss_dssp EEESCCCC
T ss_pred CeEEEEEe
Confidence 99988753
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-15 Score=120.62 Aligned_cols=138 Identities=15% Similarity=0.193 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc----------------cccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF----------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~----------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
.+..+|||||||+|.++..++....- ...++++...|+.. +++.+ |+|++..++||+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-----~~p~~--D~v~~~~vlh~~ 274 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFD-----GVPKG--DAIFIKWICHDW 274 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-----CCCCC--SEEEEESCGGGB
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCC-----CCCCC--CEEEEechhhcC
Confidence 55689999999999999999832110 01233444444431 33443 999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhh-hccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKL-LDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
++++...+++++++.|+|||.+++.+...++...... ................+ ...++.++|.++|+++||+++++
T Consensus 275 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--g~~rt~~e~~~ll~~AGF~~v~~ 352 (368)
T 3reo_A 275 SDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG--GKERTEKEFQALAMASGFRGFKV 352 (368)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSB--CCCCCHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCC--CccCCHHHHHHHHHHCCCeeeEE
Confidence 7666779999999999999999999876543221000 00000000000000000 12368999999999999999998
Q ss_pred EEEe
Q 045799 214 NIHL 217 (231)
Q Consensus 214 ~~~~ 217 (231)
....
T Consensus 353 ~~~~ 356 (368)
T 3reo_A 353 ASCA 356 (368)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-15 Score=116.42 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------CCCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------RNVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------~~~~~~~fD~ii~~~~l~~ 133 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++. .++++++||+|++..++.|
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 126 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLS 126 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc------CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhh
Confidence 36789999999999999988754 236677777655432 2456789999999987766
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhh-----hhhccccccccceEE-eCCC--eEEEeeCHHHHHHHHHH
Q 045799 134 VSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV-----KLLDRNQMIGDSFYV-RGDG--TCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 134 ~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~l~~ 205 (231)
+. +++..+++++.++|+|||.+++..++....... .+......+...... .... ....+++.+++.++
T Consensus 127 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 202 (260)
T 2avn_A 127 YV-ENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL--- 202 (260)
T ss_dssp HC-SCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---
T ss_pred cc-ccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---
Confidence 64 349999999999999999999987654311100 000000000000000 0000 11236899898888
Q ss_pred cCceEEEEEEEe
Q 045799 206 AGFSTVDINIHL 217 (231)
Q Consensus 206 ~Gf~~~~~~~~~ 217 (231)
+||+++++....
T Consensus 203 aGf~~~~~~~~~ 214 (260)
T 2avn_A 203 EGFETVDIRGIG 214 (260)
T ss_dssp TTEEEEEEEEEC
T ss_pred cCceEEEEECCC
Confidence 999999887644
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-15 Score=121.69 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCCcchHHHhcCcccc-----------------------ccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFR-----------------------EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~-----------------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
+.+|||||||+|.++..++...... ..++.+...|+.... ++..+.||+|++.+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDAR---NFEGGAADVVMLND 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGG---GGTTCCEEEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCc---ccCCCCccEEEEec
Confidence 7899999999999999887321100 012333333333211 11345799999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
++||+++++...+++++++.|+|||.+++.+...++......... ...........+ ...++.++|.++|+++||+
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~t~~e~~~ll~~aGf~ 332 (352)
T 3mcz_A 257 CLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSA--DFSLHMMVNTNH--GELHPTPWIAGVVRDAGLA 332 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHH--HHHHHHHHHSTT--CCCCCHHHHHHHHHHTTCE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHH--HhhHHHHhhCCC--CCcCCHHHHHHHHHHCCCc
Confidence 999996656799999999999999999998866554321100000 000000000000 1236899999999999999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
+++...
T Consensus 333 ~~~~~~ 338 (352)
T 3mcz_A 333 VGERSI 338 (352)
T ss_dssp EEEEEE
T ss_pred eeeecc
Confidence 998543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.1e-15 Score=110.49 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++.. ..+++++|+++.++.. ..++++||+|++..+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEV 123 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGG------EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESC
T ss_pred CCCCcEEEEcCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccH
Confidence 56789999999999999988743 2355666665543311 114689999999999
Q ss_pred eeccCC-CCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 131 LSAVSP-KKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 131 l~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++|++. ++...+++++.++|+|||.+++.+...
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999942 333678999999999999999976544
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-15 Score=119.40 Aligned_cols=138 Identities=16% Similarity=0.184 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc----------------cccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF----------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~----------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
.+..+|||||||+|.++..++....- ...+++++..|+.. +++.+ |+|++.+++|++
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-----~~p~~--D~v~~~~vlh~~ 272 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-----EVPSG--DTILMKWILHDW 272 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-----CCCCC--SEEEEESCGGGS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-----CCCCC--CEEEehHHhccC
Confidence 56789999999999999999832110 01234444444432 33443 999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-cccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
++++...+++++++.|+|||.+++.+...++........ ..............+ ...++.++|.++|+++||+++++
T Consensus 273 ~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~--g~~rt~~e~~~ll~~AGF~~v~~ 350 (364)
T 3p9c_A 273 SDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG--GRERYEREFQALARGAGFTGVKS 350 (364)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSS--CCCCBHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccC--CccCCHHHHHHHHHHCCCceEEE
Confidence 777778999999999999999999987654421100000 000000000000000 12368999999999999999998
Q ss_pred EEEe
Q 045799 214 NIHL 217 (231)
Q Consensus 214 ~~~~ 217 (231)
....
T Consensus 351 ~~~~ 354 (364)
T 3p9c_A 351 TYIY 354 (364)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 7654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=117.13 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii~ 127 (231)
.+..+|||||||+|.++..++... . .++++++|+ +.++ ..+++. .||+|++
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~--p--~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~-~~D~v~~ 274 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAF--P--GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD-GADVYLI 274 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC--T--TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS-SCSEEEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHC--C--CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC-CceEEEh
Confidence 567899999999999999887321 1 223344443 2211 013344 7999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
.+++|++++++...+++++++.|+|||++++.+...++..... . . ........... ...++.++|.++|+++|
T Consensus 275 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~-~--~~d~~~~~~~~---g~~~t~~e~~~ll~~aG 347 (369)
T 3gwz_A 275 KHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-T-L--FVDLLLLVLVG---GAERSESEFAALLEKSG 347 (369)
T ss_dssp ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-H-H--HHHHHHHHHHS---CCCBCHHHHHHHHHTTT
T ss_pred hhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-h-h--HhhHHHHhhcC---CccCCHHHHHHHHHHCC
Confidence 9999999655556899999999999999999887665432111 0 0 00000000000 12478999999999999
Q ss_pred ceEEEEEE
Q 045799 208 FSTVDINI 215 (231)
Q Consensus 208 f~~~~~~~ 215 (231)
|+++++..
T Consensus 348 f~~~~~~~ 355 (369)
T 3gwz_A 348 LRVERSLP 355 (369)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 99999865
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-15 Score=114.05 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CC-----CCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NV-----NPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~-----~~~~fD~ii~~ 128 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.|+.. .. .+++||+|++.
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~------g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~ 117 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALER------GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLND 117 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEE
T ss_pred CCcCEEEEEeCcchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEh
Confidence 67889999999999999999854 3367788888766531 11 14689999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
.+++|+++++...+++++.++| |||.++++..
T Consensus 118 ~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 118 RLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999997778889999999999 9999998753
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-15 Score=119.83 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++.... ..+++++|++ .++. .+++ +.||+|+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNP----NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG-NDYDLVL 237 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-SCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCcEEE
Confidence 5568999999999999988874321 2234444443 2211 1233 3499999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+.+++||+++++...+++++++.|+|||.+++.++..++......... ........... ....++.++|.++++++
T Consensus 238 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~t~~~~~~ll~~a 313 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAA--AFSLVMLATTP--NGDAYTFAEYESMFSNA 313 (335)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHH--HHHHHHHHHSS--SCCCCCHHHHHHHHHHT
T ss_pred EcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHH--HHHHHHHeeCC--CCCcCCHHHHHHHHHHC
Confidence 999999997666789999999999999999998876654211000000 00000000000 01347899999999999
Q ss_pred CceEEEEEEE
Q 045799 207 GFSTVDINIH 216 (231)
Q Consensus 207 Gf~~~~~~~~ 216 (231)
||+++++...
T Consensus 314 Gf~~~~~~~~ 323 (335)
T 2r3s_A 314 GFSHSQLHSL 323 (335)
T ss_dssp TCSEEEEECC
T ss_pred CCCeeeEEEC
Confidence 9999987553
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=113.41 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=86.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++.. +.+++++|++..++.. ...+++||+|++..
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~------g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~ 192 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL------GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTV 192 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECS
T ss_pred cCCCcEEEECCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEcc
Confidence 35789999999999999998844 2355666666544321 11267899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+++|+++++...+++++.++|+|||.+++........... .......++..++.+++.. |+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~--~~ 253 (286)
T 3m70_A 193 VFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC-----------------PLPFSFTFAENELKEYYKD--WE 253 (286)
T ss_dssp SGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-----------------SSCCSCCBCTTHHHHHTTT--SE
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC-----------------CCCccccCCHHHHHHHhcC--CE
Confidence 9999987788899999999999999987765433221100 0011234778899999854 99
Q ss_pred EEEEEEE
Q 045799 210 TVDINIH 216 (231)
Q Consensus 210 ~~~~~~~ 216 (231)
++.....
T Consensus 254 ~~~~~~~ 260 (286)
T 3m70_A 254 FLEYNEN 260 (286)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9888644
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=115.89 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=86.9
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEEeee
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTLIFM 130 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~~~~ 130 (231)
.+|||||||+|..+..++... . ..+++++|+ +.++. .+++ ++||+|++.++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~--p--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAE--P--SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP-SNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHC--T--TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC-SSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHHC--C--CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC-CCCCEEEEchh
Confidence 899999999999998887331 1 224455554 33321 1223 57999999999
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+||+++++...+++++++.|+|||.+++.+...++........ ........... ...++.++|.++++++||++
T Consensus 243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~t~~e~~~ll~~aGf~~ 316 (334)
T 2ip2_A 243 IGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSV---LWDVHLFMACA---GRHRTTEEVVDLLGRGGFAV 316 (334)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHH---HHHHHHHHHHS---CCCCBHHHHHHHHHHTTEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhH---HhhhHhHhhCC---CcCCCHHHHHHHHHHCCCce
Confidence 9999655566999999999999999999986654321100000 00000000000 12358999999999999999
Q ss_pred EEEEEE
Q 045799 211 VDINIH 216 (231)
Q Consensus 211 ~~~~~~ 216 (231)
+++...
T Consensus 317 ~~~~~~ 322 (334)
T 2ip2_A 317 ERIVDL 322 (334)
T ss_dssp EEEEEE
T ss_pred eEEEEC
Confidence 988654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=117.44 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=87.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++.... .+.++++|+ +.++. .+++. .||+|++
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~ 255 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAP----HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR-KADAIIL 255 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS-CEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCC----CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC-CccEEEE
Confidence 5678999999999999988873211 223344443 22110 12233 4999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc-CCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA-IGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
.+++||+++++...+++++++.|+|||.+++.++. .++.....+.. .......... + ...++.++|.++|+++
T Consensus 256 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~---~~~~~~~~~~-~--~~~~t~~e~~~ll~~a 329 (360)
T 1tw3_A 256 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFT---ELDLRMLVFL-G--GALRTREKWDGLAASA 329 (360)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHH---HHHHHHHHHH-S--CCCCBHHHHHHHHHHT
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhh---hccHHHhhhc-C--CcCCCHHHHHHHHHHC
Confidence 99999996545578999999999999999998876 33221100000 0000000000 0 1347999999999999
Q ss_pred CceEEEEEEEe
Q 045799 207 GFSTVDINIHL 217 (231)
Q Consensus 207 Gf~~~~~~~~~ 217 (231)
||+++++...+
T Consensus 330 Gf~~~~~~~~~ 340 (360)
T 1tw3_A 330 GLVVEEVRQLP 340 (360)
T ss_dssp TEEEEEEEEEE
T ss_pred CCeEEEEEeCC
Confidence 99999987764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-14 Score=119.05 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++.... .++++++|+ +.++. .+++. .||+|++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAP----HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC----CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC-CCCEEEE
Confidence 5678999999999999988873321 223444443 22211 12232 4999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec--cCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY--AIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
.+++||+++++...+++++++.|+|||.+++.+. ..++........ .....+..... ...++.++|.++|++
T Consensus 255 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~ll~~ 328 (374)
T 1qzz_A 255 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFST---LLDLRMLTFMG---GRVRTRDEVVDLAGS 328 (374)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHH---HHHHHHHHHHS---CCCCCHHHHHHHHHT
T ss_pred eccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhh---hcchHHHHhCC---CcCCCHHHHHHHHHH
Confidence 9999999544446899999999999999999887 433211100000 00000000000 134799999999999
Q ss_pred cCceEEEEEEEe
Q 045799 206 AGFSTVDINIHL 217 (231)
Q Consensus 206 ~Gf~~~~~~~~~ 217 (231)
+||+++++...+
T Consensus 329 aGf~~~~~~~~~ 340 (374)
T 1qzz_A 329 AGLALASERTSG 340 (374)
T ss_dssp TTEEEEEEEEEC
T ss_pred CCCceEEEEECC
Confidence 999999987654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=116.79 Aligned_cols=137 Identities=13% Similarity=0.191 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++.... ..+++++|+ +.++. .+++ .+|+|+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~v~ 261 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFP----ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVL 261 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCT----TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC--CCSEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCC----CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC--CCCEEE
Confidence 5678999999999999998874321 234455555 33321 1222 349999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..++||+++++...+++++++.|+|||.+++.++..++.....+......+.. .........+++.++|.++|+++
T Consensus 262 ~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 262 FCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILG---AGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGG---GGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHh---cCCCCcccCCCCHHHHHHHHHHC
Confidence 999999996555899999999999999999998866543211000000000000 00000112357899999999999
Q ss_pred CceEEEEEEEe
Q 045799 207 GFSTVDINIHL 217 (231)
Q Consensus 207 Gf~~~~~~~~~ 217 (231)
||+++++....
T Consensus 339 Gf~~v~~~~~~ 349 (359)
T 1x19_A 339 GYKDVTMVRKY 349 (359)
T ss_dssp TCEEEEEEEET
T ss_pred CCceEEEEecC
Confidence 99999887653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-15 Score=113.42 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||||||+|..+..++... ..+++++|+++.++.. ++++++||.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~-----~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~ 133 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSC-----EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhC-----CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEE
Confidence 678999999999999998887432 1256778887665431 46778999997
Q ss_pred E-----eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHH
Q 045799 127 L-----IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLST 201 (231)
Q Consensus 127 ~-----~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (231)
. ...++|+ .++..++++++|+|||||+|++.+....... . ...... ......+.+..
T Consensus 134 ~D~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~----~--~~~~~~----------~~~~~~~~~~~ 195 (236)
T 3orh_A 134 YDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL----M--KSKYSD----------ITIMFEETQVP 195 (236)
T ss_dssp ECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHH----T--TTTCSC----------HHHHHHHHTHH
T ss_pred Eeeeecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchhh----h--hhhhhh----------hhhhhHHHHHH
Confidence 5 3345566 6788999999999999999987532211100 0 000000 00012345667
Q ss_pred HHHHcCceEEEEEEEeeee
Q 045799 202 LFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 202 ~l~~~Gf~~~~~~~~~~~~ 220 (231)
.|.++||+++.++.....+
T Consensus 196 ~L~eaGF~~~~i~~~~~~l 214 (236)
T 3orh_A 196 ALLEAGFRRENIRTEVMAL 214 (236)
T ss_dssp HHHHHTCCGGGEEEEEEEC
T ss_pred HHHHcCCeEEEEEEEeecc
Confidence 7888999987766544433
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-14 Score=116.73 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------CCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------RNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------~~~~~~~fD~ii~~~~l~~~ 134 (231)
.+..+|||||||+|.++..++... . +.+++++|+ +.++. .+++ .||+|++.+++||+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~--p--~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~p--~~D~v~~~~~lh~~ 259 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETF--P--KLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTSIP--NADAVLLKYILHNW 259 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC--T--TCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTCCC--CCSEEEEESCGGGS
T ss_pred ccCceEEEeCCCccHHHHHHHHHC--C--CCeEEEeeC-HHHHhhcccCCCcEEEeccccCCCC--CccEEEeehhhccC
Confidence 456899999999999999887321 1 224455554 33221 1223 39999999999999
Q ss_pred CCCCHHHHHHHHHHhcCC---CeEEEEEeccCCchhhhh-hhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 135 SPKKMPLILQNIKAVLKP---DGYILVCDYAIGDFAQVK-LLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~---gG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++++...+++++++.|+| ||++++.++..++..... ................ ...++.++|.++|+++||++
T Consensus 260 ~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----g~~~t~~e~~~ll~~aGf~~ 335 (352)
T 1fp2_A 260 TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLN----GKERNEEEWKKLFIEAGFQH 335 (352)
T ss_dssp CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGT----CCCEEHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhcc----CCCCCHHHHHHHHHHCCCCe
Confidence 544444999999999999 999999886654322100 0000000000000000 12358899999999999999
Q ss_pred EEEEEE
Q 045799 211 VDINIH 216 (231)
Q Consensus 211 ~~~~~~ 216 (231)
+++...
T Consensus 336 ~~~~~~ 341 (352)
T 1fp2_A 336 YKISPL 341 (352)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 987664
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.2e-15 Score=119.52 Aligned_cols=136 Identities=15% Similarity=0.221 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------CCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------RNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------~~~~~~~fD~ii~~~~l~~~ 134 (231)
.+..+|||||||+|.++..++.... .+.++++|+ +.++. .+++. ||+|++.+++||+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~--~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYP----LIKGINFDL-PQVIENAPPLSGIEHVGGDMFASVPQ--GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCC--EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC----CCeEEEeCh-HHHHHhhhhcCCCEEEeCCcccCCCC--CCEEEEecccccC
Confidence 4568999999999999999873321 223344443 22211 12332 9999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-cccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
++++...+++++++.|+|||.+++.++..++........ .............. ...++.++|.++|+++||+++++
T Consensus 281 ~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~t~~e~~~ll~~aGf~~~~~ 357 (372)
T 1fp1_D 281 SDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG---GRERTEKQYEKLSKLSGFSKFQV 357 (372)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS---CCCEEHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccC---CccCCHHHHHHHHHHCCCceEEE
Confidence 544444999999999999999999876554321100000 00000000000000 12358999999999999999988
Q ss_pred EEE
Q 045799 214 NIH 216 (231)
Q Consensus 214 ~~~ 216 (231)
...
T Consensus 358 ~~~ 360 (372)
T 1fp1_D 358 ACR 360 (372)
T ss_dssp EEE
T ss_pred EEc
Confidence 763
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-14 Score=114.44 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
....+|||||||+|.++..++.... ....+++++..|+.+. + ...+|++++.
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~----~--~~~~D~~~~~ 251 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD----P--LPEADLYILA 251 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS----C--CCCCSEEEEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccC----C--CCCceEEEee
Confidence 4567999999999999999982110 0123456666665432 2 2357999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+||++++++...+|+++++.|+|||.++|.+...++......... ...-.+.....+ .-++.++|.++|+++||
T Consensus 252 ~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~--~~dl~ml~~~~g---~ert~~e~~~ll~~AGf 326 (353)
T 4a6d_A 252 RVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQ--LYSLNMLVQTEG---QERTPTHYHMLLSSAGF 326 (353)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHH--HHHHHHHHSSSC---CCCCHHHHHHHHHHHTC
T ss_pred eecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHH--HHHHHHHHhCCC---cCCCHHHHHHHHHHCCC
Confidence 9999997767789999999999999999999876543221100000 000000000011 12589999999999999
Q ss_pred eEEEEEEEe
Q 045799 209 STVDINIHL 217 (231)
Q Consensus 209 ~~~~~~~~~ 217 (231)
+++++...+
T Consensus 327 ~~v~v~~~~ 335 (353)
T 4a6d_A 327 RDFQFKKTG 335 (353)
T ss_dssp EEEEEECCS
T ss_pred ceEEEEEcC
Confidence 999886543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9e-14 Score=111.02 Aligned_cols=147 Identities=15% Similarity=0.175 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc-----------------------------cccceeeeeecCCcccccCCCC--C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF-----------------------------REERVNAFVCNVVNDDLSRNVN--P 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~-----------------------------~~~~~~~~~~D~~~~~~~~~~~--~ 119 (231)
.++.+|||+|||+|.++..++..... ...++.+...|+....+..+++ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 46789999999999999988742100 0002334444443322111232 4
Q ss_pred CCeeEEEEeeeeecc--CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccc----------------
Q 045799 120 SSVDVVTLIFMLSAV--SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDS---------------- 181 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~--~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~---------------- 181 (231)
++||+|++.+++||+ +.++...++++++++|+|||.+++..+....................
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 192 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG 192 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence 589999999999987 33567899999999999999999987655322110000000000000
Q ss_pred ----eEE-eCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 182 ----FYV-RGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 182 ----~~~-~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
+.. .........++.+++.+++++.||+++....+.
T Consensus 193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~ 233 (313)
T 3bgv_A 193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFL 233 (313)
T ss_dssp CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHH
T ss_pred ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHH
Confidence 000 001112345788899999999999999976543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-15 Score=118.12 Aligned_cols=90 Identities=16% Similarity=0.294 Sum_probs=58.0
Q ss_pred CCCCeeEEEEeeeeecc----CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEe
Q 045799 118 NPSSVDVVTLIFMLSAV----SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFY 193 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~----~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
.+++||+|++..+++|+ +++++..++++++++|+|||++++........... ......+..++. ...
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~--~~~~~~~~~~~~-------~~~ 244 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKR--KTLTETIYKNYY-------RIQ 244 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTT--TTSCHHHHHHHH-------HCC
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhh--hcccHHHHhhhh-------cEE
Confidence 56899999999999877 34488999999999999999999864322211100 000000111110 012
Q ss_pred eCHHHHHHHHHH--cCceEEEEEEE
Q 045799 194 FSEDFLSTLFLE--AGFSTVDINIH 216 (231)
Q Consensus 194 ~~~~~l~~~l~~--~Gf~~~~~~~~ 216 (231)
+.++++.++|.+ +||+.+++...
T Consensus 245 ~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 245 LKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp CCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred EcHHHHHHHHHhcCCCceEEEEecc
Confidence 456889999998 99988776543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-13 Score=96.57 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------CCCCCCCeeEEEEeeeeeccCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------RNVNPSSVDVVTLIFMLSAVSPK 137 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------~~~~~~~fD~ii~~~~l~~~~~~ 137 (231)
.++.+|||+|||+|.++..++... +++++|+++.++. .++++++||+|+++..+++.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~-------~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN-------TVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS-------EEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC-------cEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence 456799999999999999887542 6677887766542 13455899999999888866432
Q ss_pred -------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 138 -------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 138 -------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+...++.++.+.| |||.+++..... ...+++.++++++||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHHHHHHTTCEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHHHHHHCCCcE
Confidence 3467899999999 999999874221 24578999999999998
Q ss_pred EEEEEEe
Q 045799 211 VDINIHL 217 (231)
Q Consensus 211 ~~~~~~~ 217 (231)
+.+....
T Consensus 144 ~~~~~~~ 150 (170)
T 3q87_B 144 RILKVRK 150 (170)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 8876543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-14 Score=113.20 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCC------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNP------ 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~------ 119 (231)
.++.+|||||||+|.++..++.... ...+++++|+++.++. .++++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELK---PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDK 111 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSS---CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC---CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccC
Confidence 5678999999999999999983110 1234555555543321 12334
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
++||+|++..++||+ ++..+++++.++|+|||.+++.++.
T Consensus 112 ~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 112 QKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp SCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 799999999999999 7899999999999999999985443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=106.34 Aligned_cols=128 Identities=12% Similarity=0.206 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||||||||.++..++... ..+++++|++..|+.. .++..+||+|++.
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~g-----a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d 158 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNG-----AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASID 158 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-----CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEEC
T ss_pred ccccEEEecCCCccHHHHHHHhCC-----CCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEE
Confidence 467899999999999998887541 1267888988877632 1233459999998
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++++ ..++.+++++|+|||.+++... +.+... ...+... -...+.. .+.+..+++.+++.++||
T Consensus 159 ~sf~sl-----~~vL~e~~rvLkpGG~lv~lvk--Pqfe~~-----~~~~~~~-G~vrd~~-~~~~~~~~v~~~~~~~Gf 224 (291)
T 3hp7_A 159 VSFISL-----NLILPALAKILVDGGQVVALVK--PQFEAG-----REQIGKN-GIVRESS-IHEKVLETVTAFAVDYGF 224 (291)
T ss_dssp CSSSCG-----GGTHHHHHHHSCTTCEEEEEEC--GGGTSC-----GGGCC-C-CCCCCHH-HHHHHHHHHHHHHHHTTE
T ss_pred eeHhhH-----HHHHHHHHHHcCcCCEEEEEEC--cccccC-----hhhcCCC-CccCCHH-HHHHHHHHHHHHHHHCCC
Confidence 777654 6699999999999999988631 111100 0000000 0000000 123577889999999999
Q ss_pred eEEEEEEEe
Q 045799 209 STVDINIHL 217 (231)
Q Consensus 209 ~~~~~~~~~ 217 (231)
.+..+...+
T Consensus 225 ~v~~~~~sp 233 (291)
T 3hp7_A 225 SVKGLDFSP 233 (291)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEECC
Confidence 999876643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=103.07 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------CCCC-CCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------RNVN-PSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------~~~~-~~~fD~ii~~~~ 130 (231)
.++.+|||||||+|.++..++.. +.+++++|+++.++. .+++ +++||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ------AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--
Confidence 56789999999999999988744 235566666554321 1345 7899999986
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
.++..+++++.++|||||.++.. ....+..++.+.+.++||++
T Consensus 119 ------~~~~~~l~~~~~~LkpgG~l~~~-------------------------------~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 119 ------RGPTSVILRLPELAAPDAHFLYV-------------------------------GPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp ------SCCSGGGGGHHHHEEEEEEEEEE-------------------------------ESSSCCTHHHHHHHHTTCEE
T ss_pred ------CCHHHHHHHHHHHcCCCcEEEEe-------------------------------CCcCCHHHHHHHHHHCCCeE
Confidence 24567889999999999999811 01234568899999999999
Q ss_pred EEEEEEeeee
Q 045799 211 VDINIHLKQI 220 (231)
Q Consensus 211 ~~~~~~~~~~ 220 (231)
+.+.......
T Consensus 162 ~~~~~~~~~~ 171 (226)
T 3m33_A 162 VAEDHVSVLA 171 (226)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEeeeecc
Confidence 8887665443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-13 Score=101.22 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCee
Q 045799 68 CPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVD 123 (231)
Q Consensus 68 ~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD 123 (231)
...+++.+|||+|||+|.++..++.... ..-.++++|+++.++. .+...+++|
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG---~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIG---PRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHC---TTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence 4568999999999999999999982211 0113445555544432 144567899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHH
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLF 203 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 203 (231)
+|++. +.|- ++...++.++++.|||||.+++........... .. --..++..+.|
T Consensus 150 vVf~d--~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~----p~-----------------~~~~~~ev~~L 204 (233)
T 4df3_A 150 GLYAD--VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTT----EP-----------------SEVYKREIKTL 204 (233)
T ss_dssp EEEEC--CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT----CC-----------------CHHHHHHHHHH
T ss_pred EEEEe--ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCC----Ch-----------------HHHHHHHHHHH
Confidence 98863 3333 677889999999999999999874322211100 00 01123456778
Q ss_pred HHcCceEEEEEE
Q 045799 204 LEAGFSTVDINI 215 (231)
Q Consensus 204 ~~~Gf~~~~~~~ 215 (231)
+++||++++...
T Consensus 205 ~~~GF~l~e~i~ 216 (233)
T 4df3_A 205 MDGGLEIKDVVH 216 (233)
T ss_dssp HHTTCCEEEEEE
T ss_pred HHCCCEEEEEEc
Confidence 899999988654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-13 Score=100.27 Aligned_cols=131 Identities=16% Similarity=0.210 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------------CCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------------RNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------------~~~~~~~fD 123 (231)
.++.+|||||||+|.++..++... ...+++++|+++.++. .++++++ |
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~----p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d 100 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQN----PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-G 100 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHC----TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-E
T ss_pred cCCCEEEEecCCCCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-C
Confidence 567899999999999999988431 1346677777765332 1334444 6
Q ss_pred EEEEee---ee--eccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHH
Q 045799 124 VVTLIF---ML--SAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDF 198 (231)
Q Consensus 124 ~ii~~~---~l--~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
.|++.. .+ +|+ .++..++++++++|||||.+++.......... ....... ......+..+.
T Consensus 101 ~v~~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------~~~~~~~------~~~~~~~~~~~ 166 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVL--GSSPEMLRGMAAVCRPGASFLVALNLHAWRPS------VPEVGEH------PEPTPDSADEW 166 (218)
T ss_dssp EEEEESCCHHHHHHHH--TSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTB------CGGGTTC------CCCCHHHHHHH
T ss_pred EEEEEccchhhhhhhh--ccHHHHHHHHHHHcCCCcEEEEEecccccccc------ccccccC------CccchHHHHHH
Confidence 666332 22 266 56689999999999999999985322111100 0000000 00011123455
Q ss_pred HHHHHHHcCceEEEEEEEeeee
Q 045799 199 LSTLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~~~~~~~ 220 (231)
+..++.++||++.++.......
T Consensus 167 l~~~l~~aGf~i~~~~~~~~~~ 188 (218)
T 3mq2_A 167 LAPRYAEAGWKLADCRYLEPEE 188 (218)
T ss_dssp HHHHHHHTTEEEEEEEEECHHH
T ss_pred HHHHHHHcCCCceeeeccchhh
Confidence 8889999999999988765443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-14 Score=106.67 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... ..+++++|+++.++. .++++++||+|+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 133 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-----EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcC-----CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEE
Confidence 567899999999999998886321 125567777665531 156778999999
Q ss_pred E-eeee--eccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 127 L-IFML--SAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 127 ~-~~~l--~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+ .+.+ +.....+...++++++++|||||++++.+..
T Consensus 134 ~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 9 5554 1221234557899999999999999987544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=102.69 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCC---CcchHHHhcCccccccceeeeeecCCcccccC--------------------------------C
Q 045799 72 NPKVVLEVGCGA---GNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------------N 116 (231)
Q Consensus 72 ~~~~iLdvGcG~---G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------------~ 116 (231)
...+|||||||+ |.++..++... .+.+++++|+++.++.. .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~----p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 152 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVN----PDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRM 152 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHC----TTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhC----CCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhcc
Confidence 347999999999 97765443110 02244555555443210 1
Q ss_pred CCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCH
Q 045799 117 VNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSE 196 (231)
Q Consensus 117 ~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (231)
+...+||+|++..++||++++++..+++++++.|+|||++++.++.... ... .. .+...+..... ...+++.
T Consensus 153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~~~-~~----~~~~~~~~~~~--~~~~~s~ 224 (274)
T 2qe6_A 153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-LPA-QQ----KLARITRENLG--EGWARTP 224 (274)
T ss_dssp CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-CHH-HH----HHHHHHHHHHS--CCCCBCH
T ss_pred CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-hHH-HH----HHHHHHHhcCC--CCccCCH
Confidence 2224899999999999997667999999999999999999999876532 100 00 00000000000 1234799
Q ss_pred HHHHHHHHHcCceEEEE
Q 045799 197 DFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~~~ 213 (231)
+++.++| .||++++.
T Consensus 225 ~ei~~~l--~G~~l~~~ 239 (274)
T 2qe6_A 225 EEIERQF--GDFELVEP 239 (274)
T ss_dssp HHHHHTT--TTCEECTT
T ss_pred HHHHHHh--CCCeEccC
Confidence 9999999 59988863
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=112.39 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------CCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------RNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------~~~~~~~fD~ii~~~~l~~~ 134 (231)
.+..+|||||||+|.++..++.... .++++++|+. .++. .+++ +||+|++.+++||+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~~--~~D~v~~~~vlh~~ 264 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFP----HLKCTVFDQP-QVVGNLTGNENLNFVGGDMFKSIP--SADAVLLKWVLHDW 264 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCT----TSEEEEEECH-HHHSSCCCCSSEEEEECCTTTCCC--CCSEEEEESCGGGS
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEeccH-HHHhhcccCCCcEEEeCccCCCCC--CceEEEEcccccCC
Confidence 3457999999999999999873211 1233333431 1111 1223 49999999999999
Q ss_pred CCCCHHHHHHHHHHhcCC---CeEEEEEeccCCchhhhh-hhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 135 SPKKMPLILQNIKAVLKP---DGYILVCDYAIGDFAQVK-LLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~---gG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++++...+++++++.|+| ||.+++.++..++..... ...........+..... ...++.++|.++|+++||++
T Consensus 265 ~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---g~~~t~~e~~~ll~~aGf~~ 341 (358)
T 1zg3_A 265 NDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL---GKERTKQEWEKLIYDAGFSS 341 (358)
T ss_dssp CHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHS---CCCEEHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCC---CCCCCHHHHHHHHHHcCCCe
Confidence 544455999999999999 999999886654321100 00000000000000000 12368999999999999999
Q ss_pred EEEEEE
Q 045799 211 VDINIH 216 (231)
Q Consensus 211 ~~~~~~ 216 (231)
+++...
T Consensus 342 ~~~~~~ 347 (358)
T 1zg3_A 342 YKITPI 347 (358)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 987663
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-12 Score=97.35 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCC---CCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVN---PSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~---~~~fD~ 124 (231)
.++.+|||||||+|..+..++... ...+++++|+++.++.. ++. +++||+
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICF----PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHC----TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccE
Confidence 467899999999999998887311 12356667766544311 221 578999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHH
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFL 204 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 204 (231)
|++.. + .++..+++.+.++|+|||.+++....... ....++.+.++
T Consensus 145 V~~~~----~--~~~~~~l~~~~~~LkpgG~l~~~~g~~~~----------------------------~~~~~~~~~l~ 190 (240)
T 1xdz_A 145 VTARA----V--ARLSVLSELCLPLVKKNGLFVALKAASAE----------------------------EELNAGKKAIT 190 (240)
T ss_dssp EEEEC----C--SCHHHHHHHHGGGEEEEEEEEEEECC-CH----------------------------HHHHHHHHHHH
T ss_pred EEEec----c--CCHHHHHHHHHHhcCCCCEEEEEeCCCch----------------------------HHHHHHHHHHH
Confidence 99966 3 56889999999999999999886211100 12346778889
Q ss_pred HcCceEEEEEEE
Q 045799 205 EAGFSTVDINIH 216 (231)
Q Consensus 205 ~~Gf~~~~~~~~ 216 (231)
++||+++++...
T Consensus 191 ~~g~~~~~~~~~ 202 (240)
T 1xdz_A 191 TLGGELENIHSF 202 (240)
T ss_dssp HTTEEEEEEEEE
T ss_pred HcCCeEeEEEEE
Confidence 999999887643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-13 Score=100.97 Aligned_cols=128 Identities=14% Similarity=0.195 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|.++..++... ..+++++|+++.|+.. .++...||.+.+.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g-----~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D 110 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNG-----AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSID 110 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-----CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEEC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcC-----CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEE
Confidence 456799999999999999888541 1267899999887642 0111135666655
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.++.++ ..++++++++|||||.+++.. .+.+... ...+...-.. .+. .....+.+++.++++++||
T Consensus 111 ~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~~-----~~~~~~~G~~-~d~-~~~~~~~~~l~~~l~~aGf 176 (232)
T 3opn_A 111 VSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEAG-----REQVGKNGII-RDP-KVHQMTIEKVLKTATQLGF 176 (232)
T ss_dssp CSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHSC-----HHHHC-CCCC-CCH-HHHHHHHHHHHHHHHHHTE
T ss_pred EEhhhH-----HHHHHHHHHhccCCCEEEEEE--CcccccC-----HHHhCcCCee-cCc-chhHHHHHHHHHHHHHCCC
Confidence 554443 679999999999999999863 1111100 0000000000 000 0123578899999999999
Q ss_pred eEEEEEEEe
Q 045799 209 STVDINIHL 217 (231)
Q Consensus 209 ~~~~~~~~~ 217 (231)
+++.+...+
T Consensus 177 ~v~~~~~~p 185 (232)
T 3opn_A 177 SVKGLTFSP 185 (232)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEEcc
Confidence 999887643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-13 Score=97.65 Aligned_cols=86 Identities=15% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.. ..+++++|+++.++.. .+.+++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~ 94 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAI 94 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEE
Confidence 67889999999999999999854 2355677766555321 13467899998
Q ss_pred Eee-eeecc------CCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 127 LIF-MLSAV------SPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 127 ~~~-~l~~~------~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+.. .+++- .+++...+++++.++|||||.+++..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 863 22210 1144567889999999999999997654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.9e-13 Score=99.35 Aligned_cols=105 Identities=11% Similarity=0.181 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. .+.+++||+|++..
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~ 133 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLG-----AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANI 133 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEES
T ss_pred cCCCEEEEECCCCCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECC
Confidence 567899999999999998877421 1255666666544321 23458999999988
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+++++ ..+++++.++|+|||.+++.++.. .+.+++.++++++||+
T Consensus 134 ~~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~~~~~~~~~~Gf~ 178 (205)
T 3grz_A 134 LAEIL-----LDLIPQLDSHLNEDGQVIFSGIDY------------------------------LQLPKIEQALAENSFQ 178 (205)
T ss_dssp CHHHH-----HHHGGGSGGGEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTEE
T ss_pred cHHHH-----HHHHHHHHHhcCCCCEEEEEecCc------------------------------ccHHHHHHHHHHcCCc
Confidence 77654 678999999999999999864322 1457889999999999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
++++..
T Consensus 179 ~~~~~~ 184 (205)
T 3grz_A 179 IDLKMR 184 (205)
T ss_dssp EEEEEE
T ss_pred eEEeec
Confidence 988754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=99.91 Aligned_cols=135 Identities=14% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCC-cccc---c--------C-------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVV-NDDL---S--------R-------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~-~~~~---~--------~-------------~~~~~~fD~i 125 (231)
.++.+|||||||+|.++..++... .+..++++|++ ..++ . . .++...+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~----~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v 98 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIND----QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIA 98 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTC----TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeE
Confidence 567899999999999999887432 24578899998 3331 0 0 1122223444
Q ss_pred EEeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHH
Q 045799 126 TLIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFL 199 (231)
Q Consensus 126 i~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (231)
.+..+....+ ..+...++++++++|||||.+++............+. .. ... .. ...++..+++
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~-----~~-~~~---~~-~~~~~~~~el 168 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIK-----KR-GLP---LL-SKAYFLSEQY 168 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------C-CHHHHHSHHH
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhh-----hc-CCC---CC-ChhhcchHHH
Confidence 4433321110 0233568999999999999999843222211100000 00 000 00 0011222359
Q ss_pred HHHHHHcCceEEEEEEEeee
Q 045799 200 STLFLEAGFSTVDINIHLKQ 219 (231)
Q Consensus 200 ~~~l~~~Gf~~~~~~~~~~~ 219 (231)
..++.++||++.........
T Consensus 169 ~~~l~~aGf~v~~~~~~~~~ 188 (225)
T 3p2e_A 169 KAELSNSGFRIDDVKELDNE 188 (225)
T ss_dssp HHHHHHHTCEEEEEEEECHH
T ss_pred HHHHHHcCCCeeeeeecCHH
Confidence 99999999999998877643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=93.09 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCC--CCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNP--SSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~--~~fD~ii 126 (231)
.++.+|||+|||+|.++..++... ...+++++|+++.++. ..++. ++||+|+
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~ 99 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRST----PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIF 99 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTS----SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHC----CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEE
Confidence 567899999999999999887442 1335566666543321 02222 7899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..++++ ..+++++.+.|+|||.+++.+... .+...+.+++++.
T Consensus 100 ~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 100 IGGGLTA------PGVFAAAWKRLPVGGRLVANAVTV------------------------------ESEQMLWALRKQF 143 (178)
T ss_dssp ECC-TTC------TTHHHHHHHTCCTTCEEEEEECSH------------------------------HHHHHHHHHHHHH
T ss_pred ECCcccH------HHHHHHHHHhcCCCCEEEEEeecc------------------------------ccHHHHHHHHHHc
Confidence 9888876 558999999999999999875332 1335677888888
Q ss_pred CceEEEEEEEeeeee
Q 045799 207 GFSTVDINIHLKQIK 221 (231)
Q Consensus 207 Gf~~~~~~~~~~~~~ 221 (231)
|+++..+......-.
T Consensus 144 ~~~~~~~~~~~~~~~ 158 (178)
T 3hm2_A 144 GGTISSFAISHEHTV 158 (178)
T ss_dssp CCEEEEEEEEEEEEC
T ss_pred CCeeEEEEeecCccc
Confidence 888888766554433
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-12 Score=96.01 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-------------------------cCCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-------------------------SRNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-------------------------~~~~~~~~fD~i 125 (231)
.++.+|||||||+|.++..++.... ..+++++|+++.++ ...+++++||+|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i 115 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP----DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRL 115 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC----CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEE
Confidence 4578999999999999998873211 22344444443222 112567889999
Q ss_pred EEeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++.+...+.. .-....+++++.++|+|||.+++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 9986543221 0023679999999999999998864
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=92.19 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CC-CCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NV-NPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~-~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.... ..+++++|+++.++.. .+ ..++||+|++
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~ 114 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMP----NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFI 114 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCT----TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEE
Confidence 6778999999999999988874321 2345666665543311 11 2267999998
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
..+++ +...+++++.+.|+|||.+++..... -+.+++.++++++|
T Consensus 115 ~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------------~~~~~~~~~l~~~g 159 (204)
T 3e05_A 115 GGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------------DTLTKAVEFLEDHG 159 (204)
T ss_dssp SCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH------------------------------HHHHHHHHHHHHTT
T ss_pred CCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc------------------------------ccHHHHHHHHHHCC
Confidence 77553 67899999999999999999864222 13467888999999
Q ss_pred ceE
Q 045799 208 FST 210 (231)
Q Consensus 208 f~~ 210 (231)
|.+
T Consensus 160 ~~~ 162 (204)
T 3e05_A 160 YMV 162 (204)
T ss_dssp CEE
T ss_pred Cce
Confidence 843
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-12 Score=98.39 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++.. .+++++||+|+++.
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~------g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~ 192 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL 192 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC
T ss_pred CCCCEEEEecCCCcHHHHHHHHh------CCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECC
Confidence 56789999999999999887743 1256677776554311 13467899999876
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
..++ ...++..+.++|+|||++++..... .+.+++.++++++||+
T Consensus 193 ~~~~-----~~~~l~~~~~~LkpgG~lils~~~~------------------------------~~~~~v~~~l~~~Gf~ 237 (254)
T 2nxc_A 193 YAEL-----HAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFR 237 (254)
T ss_dssp CHHH-----HHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCE
T ss_pred cHHH-----HHHHHHHHHHHcCCCCEEEEEeecc------------------------------CCHHHHHHHHHHCCCE
Confidence 5443 4679999999999999999864221 2457899999999999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
++++..
T Consensus 238 ~~~~~~ 243 (254)
T 2nxc_A 238 PLEEAA 243 (254)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 988654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-13 Score=99.54 Aligned_cols=84 Identities=15% Similarity=0.318 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.+..+|||+|||+|.++..++.... ..++..+|++..+++. ..+.++||+|++..
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p----~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k 123 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENE----KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLK 123 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSC----CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEET
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhh
Confidence 6688999999999999999974432 3367788887776532 12467899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++||+ ++.+..+.++.+.|+|||+++--+
T Consensus 124 ~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 124 MLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp CHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred HHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 99999 677778889999999999997653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=109.71 Aligned_cols=89 Identities=12% Similarity=0.262 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------------CCCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------------RNVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------------~~~~~~~ 121 (231)
.++.+|||||||+|.++..++.... ...+++++|++..++. .++.+++
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~---p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~s 796 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPT---SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHD 796 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCC---CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCC---CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCC
Confidence 4678999999999999999874421 1135667777655432 1345689
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
||+|++..+++|+++.....+++++.++|||| .+++.+++.
T Consensus 797 FDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 797 VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp CCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred eeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 99999999999996545557999999999999 777776544
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=89.58 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=79.6
Q ss_pred CCCCCeEEEEcCCCCc--chHHHhc--CccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHH
Q 045799 70 NGNPKVVLEVGCGAGN--TIFPLVS--HSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQN 145 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~--~~~~l~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~ 145 (231)
..++.+|||||||+.. .+..++. .... ...+.+...|+..... .++++++||+|++..++||++ ++...++++
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~-~~~~~~~~~d~~~~~~-~~~~~~~fD~V~~~~~l~~~~-~~~~~~l~~ 86 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALT-GNEGRVSVENIKQLLQ-SAHKESSFDIILSGLVPGSTT-LHSAEILAE 86 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHHHT-TTTSEEEEEEGGGGGG-GCCCSSCEEEEEECCSTTCCC-CCCHHHHHH
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHHhc-ccCcEEEEechhcCcc-ccCCCCCEeEEEECChhhhcc-cCHHHHHHH
Confidence 4788999999999854 1111111 1111 1136777888764321 123678999999999999983 346899999
Q ss_pred HHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 146 IKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 146 ~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
++++|||||++++.+...... . .. ....+.+++.++|+++|| +. +..
T Consensus 87 ~~r~LkpgG~l~~~~~~~~~~--------~----~~---------~~~~~~~~~~~~l~~aGf-i~-~~~ 133 (176)
T 2ld4_A 87 IARILRPGGCLFLKEPVETAV--------D----NN---------SKVKTASKLCSALTLSGL-VE-VKE 133 (176)
T ss_dssp HHHHEEEEEEEEEEEEEESSS--------C----SS---------SSSCCHHHHHHHHHHTTC-EE-EEE
T ss_pred HHHHCCCCEEEEEEccccccc--------c----cc---------cccCCHHHHHHHHHHCCC-cE-eec
Confidence 999999999999954321100 0 00 112478899999999999 55 444
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-12 Score=95.46 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCC-CCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCG-AGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG-~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
.++.+|||+||| +|.++..++... ..+++++|+++.++. .++++++||+|+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-----NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence 678999999999 999998887331 123445555443321 134568999999
Q ss_pred EeeeeeccCCC-----------------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCe
Q 045799 127 LIFMLSAVSPK-----------------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGT 189 (231)
Q Consensus 127 ~~~~l~~~~~~-----------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (231)
+.-.+++.+.. ....+++++.++|+|||.+++......
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE------------------------- 183 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------------------------
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------------------------
Confidence 98665544211 147899999999999999988632110
Q ss_pred EEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 190 CSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 190 ~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
...+++.+++++.||++..+..
T Consensus 184 ----~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 184 ----KLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp ----HHHHHHHHHHHHTTCEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCceEEEEe
Confidence 1346888999999998877643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-11 Score=89.90 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CC-CCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NV-NPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~-~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.. ..+++++|+++.++.. .+ ...+||+|+
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~ 127 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA------GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVF 127 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEE
Confidence 66789999999999999888743 2244555554433210 01 224799999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+...+ +.. +++++.+.|+|||.+++..... -+..++.+.+++.
T Consensus 128 ~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~------------------------------~~~~~~~~~l~~~ 170 (204)
T 3njr_A 128 IGGGG------SQA-LYDRLWEWLAPGTRIVANAVTL------------------------------ESETLLTQLHARH 170 (204)
T ss_dssp ECSCC------CHH-HHHHHHHHSCTTCEEEEEECSH------------------------------HHHHHHHHHHHHH
T ss_pred ECCcc------cHH-HHHHHHHhcCCCcEEEEEecCc------------------------------ccHHHHHHHHHhC
Confidence 86633 456 9999999999999999874322 1345778889999
Q ss_pred CceEEEEEEEeeeee
Q 045799 207 GFSTVDINIHLKQIK 221 (231)
Q Consensus 207 Gf~~~~~~~~~~~~~ 221 (231)
|+++..+........
T Consensus 171 g~~i~~i~~~~~~~~ 185 (204)
T 3njr_A 171 GGQLLRIDIAQAEPL 185 (204)
T ss_dssp CSEEEEEEEEEEEEE
T ss_pred CCcEEEEEeeccccc
Confidence 999999877655543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.5e-12 Score=94.39 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=61.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~~~~fD~ 124 (231)
.++..|||||||+|..+..++.... ...++++|++..++.. .+++++||.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p----~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRP----EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCC----CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChhe
Confidence 3567999999999999999884321 3356677776654421 257889999
Q ss_pred EEEeeeeeccCCCCH------HHHHHHHHHhcCCCeEEEEEe
Q 045799 125 VTLIFMLSAVSPKKM------PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 125 ii~~~~l~~~~~~~~------~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|++.+...+...... ..++++++++|||||.+++.+
T Consensus 109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 998754433211111 259999999999999999875
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=92.61 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
.++..|||||||+|.++..++.... ..+++++|++..++.. .+++++||.|
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v 112 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNP----DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRV 112 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCC----CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEE
Confidence 4567899999999999999873311 2345556655443210 1467889999
Q ss_pred EEeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++.+...+.. +-....+++++.++|+|||.+++..
T Consensus 113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 8765432220 0013678999999999999999863
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-12 Score=100.29 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=36.9
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.++||+|+|.++++|++++...++++++++.|+|||++++.
T Consensus 211 ~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 211 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46899999999999997666689999999999999999884
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.4e-11 Score=91.78 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------C---CCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------N---VNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~---~~~~~fD~ 124 (231)
.++.+|||||||+|..+..++... ...+++++|++..++.. + ..+++||+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~ 154 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVR----PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYAR 154 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHC----TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceE
Confidence 567899999999999998887321 12355666666544321 1 12479999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHH
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFL 204 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 204 (231)
|++.. + .+...+++.+.++|||||++++........ ...++.+.++
T Consensus 155 I~s~a----~--~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~----------------------------e~~~~~~~l~ 200 (249)
T 3g89_A 155 AVARA----V--APLCVLSELLLPFLEVGGAAVAMKGPRVEE----------------------------ELAPLPPALE 200 (249)
T ss_dssp EEEES----S--CCHHHHHHHHGGGEEEEEEEEEEECSCCHH----------------------------HHTTHHHHHH
T ss_pred EEECC----c--CCHHHHHHHHHHHcCCCeEEEEEeCCCcHH----------------------------HHHHHHHHHH
Confidence 99964 3 567889999999999999998863211110 1235667788
Q ss_pred HcCceEEEEEEE
Q 045799 205 EAGFSTVDINIH 216 (231)
Q Consensus 205 ~~Gf~~~~~~~~ 216 (231)
..||.++++...
T Consensus 201 ~~G~~~~~~~~~ 212 (249)
T 3g89_A 201 RLGGRLGEVLAL 212 (249)
T ss_dssp HHTEEEEEEEEE
T ss_pred HcCCeEEEEEEe
Confidence 889998887655
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-12 Score=103.26 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=80.2
Q ss_pred hhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCC------CCcchHHHhcCccccccceeeeeec
Q 045799 34 KYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCG------AGNTIFPLVSHSEFREERVNAFVCN 107 (231)
Q Consensus 34 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG------~G~~~~~l~~~~~~~~~~~~~~~~D 107 (231)
..|+....+|....+.+..++...+..++..+ ..++.+||||||| +|..+..++... +. +.+++++|
T Consensus 182 ~~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l----~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~-fP--~a~V~GVD 254 (419)
T 3sso_A 182 PDLSELSSRYFTPKFGFLHWFTPHYDRHFRDY----RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSF-FP--RGQIYGLD 254 (419)
T ss_dssp CCHHHHHHHTTCTTBSSSCBCHHHHHHHHGGG----TTSCCEEEEECCSCTTCSSCCCHHHHHHHHH-CT--TCEEEEEE
T ss_pred ccHHHHHHHhCCCcccccchHHHHHHHHHHhh----cCCCCEEEEEecCCCcCCCCCHHHHHHHHHh-CC--CCEEEEEE
Confidence 45888888877544443222323333323221 1457899999999 777777776321 11 34677888
Q ss_pred CCcccccC--------------CCC------CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 108 VVNDDLSR--------------NVN------PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 108 ~~~~~~~~--------------~~~------~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+++.+... ++. +++||+|++.. .|++ .+...++++++++|||||++++.+...
T Consensus 255 iSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 255 IMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp SSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred CCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 88776431 122 57899999865 4666 678899999999999999999987653
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-11 Score=96.41 Aligned_cols=148 Identities=14% Similarity=0.254 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC------cc-----ccccceeeeeecCCcccc--------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH------SE-----FREERVNAFVCNVVNDDL-------------------------- 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~------~~-----~~~~~~~~~~~D~~~~~~-------------------------- 113 (231)
+...+|+|+|||+|.++..++.. .. .....++++..|+...++
T Consensus 51 ~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~ 130 (374)
T 3b5i_A 51 PPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR 130 (374)
T ss_dssp CCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC
Confidence 34689999999999999888511 01 112356666666544442
Q ss_pred ------------cCCCCCCCeeEEEEeeeeeccC--CC----------------------------------CHHHHHHH
Q 045799 114 ------------SRNVNPSSVDVVTLIFMLSAVS--PK----------------------------------KMPLILQN 145 (231)
Q Consensus 114 ------------~~~~~~~~fD~ii~~~~l~~~~--~~----------------------------------~~~~~l~~ 145 (231)
...+++++||+|+++.+||+++ ++ |+..+|+.
T Consensus 131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1245789999999999999985 21 45567999
Q ss_pred HHHhcCCCeEEEEEeccCCchhh-------h----hhhccc-cccccceEE----eCCCeEEEeeCHHHHHHHHH-HcCc
Q 045799 146 IKAVLKPDGYILVCDYAIGDFAQ-------V----KLLDRN-QMIGDSFYV----RGDGTCSFYFSEDFLSTLFL-EAGF 208 (231)
Q Consensus 146 ~~~~Lk~gG~l~i~~~~~~~~~~-------~----~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~-~~Gf 208 (231)
.++.|+|||.+++...+..+... . .+.... ....+.... ..-....++.+.+++..+++ +.||
T Consensus 211 ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F 290 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSF 290 (374)
T ss_dssp HHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSE
T ss_pred HHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCc
Confidence 99999999999998766654210 0 000000 000010000 00112234689999999998 5899
Q ss_pred eEEEEEEEee
Q 045799 209 STVDINIHLK 218 (231)
Q Consensus 209 ~~~~~~~~~~ 218 (231)
++..++....
T Consensus 291 ~I~~le~~~~ 300 (374)
T 3b5i_A 291 AIDKLVVYKG 300 (374)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEee
Confidence 9999887653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-12 Score=98.34 Aligned_cols=109 Identities=16% Similarity=0.275 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|..+..++.... ..+++++|+++.++. .++++++||+|++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~----~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~n 183 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN 183 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEEC
Confidence 4567999999999999998873211 224555565543321 12336789999997
Q ss_pred e-------------eeeccCC----------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEe
Q 045799 129 F-------------MLSAVSP----------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVR 185 (231)
Q Consensus 129 ~-------------~l~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (231)
. +++|-|. +....+++.+.+.|+|||.+++..
T Consensus 184 pPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~------------------------- 238 (276)
T 2b3t_A 184 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH------------------------- 238 (276)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-------------------------
T ss_pred CCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-------------------------
Confidence 3 3334331 245788999999999999998851
Q ss_pred CCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 186 GDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 186 ~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
.+.+.+++.++++++||+.+++.
T Consensus 239 ------~~~~~~~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 239 ------GWQQGEAVRQAFILAGYHDVETC 261 (276)
T ss_dssp ------CSSCHHHHHHHHHHTTCTTCCEE
T ss_pred ------CchHHHHHHHHHHHCCCcEEEEE
Confidence 01356789999999999876544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=88.79 Aligned_cols=104 Identities=21% Similarity=0.330 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCC-CCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNP-SSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~-~~fD~ii 126 (231)
.++.+|||+|||+|.++..++... .+++++|+++.++. ..++. ++||+|+
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 105 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAV 105 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc------CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEE
Confidence 667899999999999998887442 24455555432211 01233 5899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++ ....+++.+.++|+|||.+++..... .+..++.+.+++.
T Consensus 106 ~~~~~~-----~~~~~l~~~~~~l~~gG~l~~~~~~~------------------------------~~~~~~~~~l~~~ 150 (192)
T 1l3i_A 106 VGGSGG-----ELQEILRIIKDKLKPGGRIIVTAILL------------------------------ETKFEAMECLRDL 150 (192)
T ss_dssp ESCCTT-----CHHHHHHHHHHTEEEEEEEEEEECBH------------------------------HHHHHHHHHHHHT
T ss_pred ECCchH-----HHHHHHHHHHHhcCCCcEEEEEecCc------------------------------chHHHHHHHHHHC
Confidence 987654 45889999999999999999874321 1345788899999
Q ss_pred CceEEEEEE
Q 045799 207 GFSTVDINI 215 (231)
Q Consensus 207 Gf~~~~~~~ 215 (231)
||.+.....
T Consensus 151 g~~~~~~~~ 159 (192)
T 1l3i_A 151 GFDVNITEL 159 (192)
T ss_dssp TCCCEEEEE
T ss_pred CCceEEEEE
Confidence 996554443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.3e-11 Score=85.71 Aligned_cols=104 Identities=13% Similarity=0.241 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.. ..+++++|+++.++. .++++++||+|++.
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~ 107 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAKR------CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIG 107 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHTT------SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEEC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEEC
Confidence 56789999999999999988741 334556665543321 02345789999998
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+ .+...+++++.++ |||.+++.+... .+..++.+.++++||
T Consensus 108 ~~------~~~~~~l~~~~~~--~gG~l~~~~~~~------------------------------~~~~~~~~~l~~~g~ 149 (183)
T 2yxd_A 108 GT------KNIEKIIEILDKK--KINHIVANTIVL------------------------------ENAAKIINEFESRGY 149 (183)
T ss_dssp SC------SCHHHHHHHHHHT--TCCEEEEEESCH------------------------------HHHHHHHHHHHHTTC
T ss_pred Cc------ccHHHHHHHHhhC--CCCEEEEEeccc------------------------------ccHHHHHHHHHHcCC
Confidence 76 4678899999998 999999875322 124578899999999
Q ss_pred eEEEEEEEee
Q 045799 209 STVDINIHLK 218 (231)
Q Consensus 209 ~~~~~~~~~~ 218 (231)
.+..+.....
T Consensus 150 ~~~~~~~~~~ 159 (183)
T 2yxd_A 150 NVDAVNVFIS 159 (183)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEeeee
Confidence 8877654433
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-12 Score=94.62 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCC-----CCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNP-----SSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~-----~~fD~ 124 (231)
.++.+|||+|||+|.++..++... ...+++++|+++.++.. ++++ ++||+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 104 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC----PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHA 104 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC----TTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccE
Confidence 567899999999999999888432 14467788887665532 2233 89999
Q ss_pred EEEeee------eeccCCCCH------------------HHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIFM------LSAVSPKKM------------------PLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~~------l~~~~~~~~------------------~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|++... +++++++.. ..+++++.++|+|||.+++.
T Consensus 105 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 105 IVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp EEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred EEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999533 333322211 78889999999999995444
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-11 Score=94.97 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------------CCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------------NVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------------~~~~~~ 121 (231)
+++.+|||||||+|..+..++.... ..+++++|+++.++.. ..++++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 169 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT----VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNT 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTC
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC----CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCc
Confidence 4568999999999999999984421 2244555554322110 114678
Q ss_pred eeEEEEeeeeeccCCCCH--HHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHH
Q 045799 122 VDVVTLIFMLSAVSPKKM--PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFL 199 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~--~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (231)
||+|++....++.+.... ..++++++++|+|||++++...+... .......+
T Consensus 170 fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--------------------------~~~~~~~~ 223 (304)
T 3bwc_A 170 YDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL--------------------------DLELIEKM 223 (304)
T ss_dssp EEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT--------------------------CHHHHHHH
T ss_pred eeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc--------------------------chHHHHHH
Confidence 999999766554432222 68999999999999999886322100 01245678
Q ss_pred HHHHHHcCceEEEEEE
Q 045799 200 STLFLEAGFSTVDINI 215 (231)
Q Consensus 200 ~~~l~~~Gf~~~~~~~ 215 (231)
.+.++++||..+....
T Consensus 224 ~~~l~~~GF~~v~~~~ 239 (304)
T 3bwc_A 224 SRFIRETGFASVQYAL 239 (304)
T ss_dssp HHHHHHHTCSEEEEEE
T ss_pred HHHHHhCCCCcEEEEE
Confidence 8999999998776654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=95.83 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEe
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~ 128 (231)
..++.+|||||||+|.++..+++.. .+.+++++|+++.+++. .+++++||+|++.
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~----~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~ 195 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHV----YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVA 195 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHT----TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEEC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHc----cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEEC
Confidence 4789999999999998775544221 13456666666555421 2346799999985
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
.. + ++...+++++.+.|||||++++.+.
T Consensus 196 a~---~--~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 196 AL---A--EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp TT---C--SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CC---c--cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 53 4 6889999999999999999999763
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-11 Score=87.60 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=64.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------C--------CCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------N--------VNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------~--------~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++ +... + +++++||+|++..
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~---~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~ 96 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIG---GKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHC---TTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhC---CCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence 5678999999999999988874310 123556666654 3211 1 4567899999998
Q ss_pred eeeccCCCCH-----------HHHHHHHHHhcCCCeEEEEEeccC
Q 045799 130 MLSAVSPKKM-----------PLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 130 ~l~~~~~~~~-----------~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++++. ... ..+++++.++|+|||.+++..+..
T Consensus 97 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 97 APNMS--GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred Ccccc--CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 88877 344 689999999999999999876544
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=88.95 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~ 124 (231)
..++.+|||+|||+|.++..++.... ...++++|+++.++. .++. ++||+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~ 146 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD----KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDV 146 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT----TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC----CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEE
Confidence 35778999999999999998873321 124455555543321 1223 68999
Q ss_pred EEEeeeeeccCC-CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHH
Q 045799 125 VTLIFMLSAVSP-KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLF 203 (231)
Q Consensus 125 ii~~~~l~~~~~-~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 203 (231)
|+ ++++. .....+++++.+.|+|||.+++. +...... ..... ..+..+++. +|
T Consensus 147 v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~------~~~~~-------------~~~~~~~l~-~l 200 (230)
T 1fbn_A 147 IY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSID------VTKDP-------------KEIFKEQKE-IL 200 (230)
T ss_dssp EE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTC------SSSCH-------------HHHHHHHHH-HH
T ss_pred EE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCC------CCCCH-------------HHhhHHHHH-HH
Confidence 98 45532 23377899999999999999986 2211100 00000 012346777 88
Q ss_pred HHcCceEEEEEEE
Q 045799 204 LEAGFSTVDINIH 216 (231)
Q Consensus 204 ~~~Gf~~~~~~~~ 216 (231)
.++||++++....
T Consensus 201 ~~~Gf~~~~~~~~ 213 (230)
T 1fbn_A 201 EAGGFKIVDEVDI 213 (230)
T ss_dssp HHHTEEEEEEEEC
T ss_pred HHCCCEEEEEEcc
Confidence 9999999887653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.7e-11 Score=91.80 Aligned_cols=109 Identities=10% Similarity=0.023 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------------CCCCCCCeeEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------------RNVNPSSVDVV 125 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------------~~~~~~~fD~i 125 (231)
++.+|||+|||+|.++..++.... .+++++|+++.++. ..+++++||+|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~-----~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK-----AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC-----CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC-----CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 678999999999999998874421 14455555543321 12447899999
Q ss_pred EEeeeeecc------------------CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCC
Q 045799 126 TLIFMLSAV------------------SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGD 187 (231)
Q Consensus 126 i~~~~l~~~------------------~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (231)
+++-.+... ...+...+++.+.++|+|||.+++.. ..
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~------------------------ 178 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH-RP------------------------ 178 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE-CT------------------------
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE-cH------------------------
Confidence 996433221 11235679999999999999999852 11
Q ss_pred CeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 188 GTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 188 ~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
....++...+.+.||....+..+
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 23457788888889988877654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7e-11 Score=92.64 Aligned_cols=110 Identities=9% Similarity=0.087 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.... . +++++|+++.++.. ...+++||+|++
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~----~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~ 198 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGK----A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM 198 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTC----C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCC----C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEE
Confidence 5688999999999999999874311 1 45666666544321 112578999988
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
.. +.....++.++.++|+|||.+++.+........ .-..+.+.+.++++|
T Consensus 199 ~~------p~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------------------------~~~~~~i~~~~~~~G 248 (278)
T 2frn_A 199 GY------VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYG 248 (278)
T ss_dssp CC------CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTT
T ss_pred CC------chhHHHHHHHHHHHCCCCeEEEEEEeecccccc------------------------ccHHHHHHHHHHHcC
Confidence 42 245577899999999999999998655422110 014568899999999
Q ss_pred ceEEEEEE
Q 045799 208 FSTVDINI 215 (231)
Q Consensus 208 f~~~~~~~ 215 (231)
|++..+..
T Consensus 249 ~~~~~~~~ 256 (278)
T 2frn_A 249 YDVEKLNE 256 (278)
T ss_dssp CEEEEEEE
T ss_pred CeeEEeee
Confidence 99877443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-11 Score=93.08 Aligned_cols=83 Identities=18% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||||||+|.++..++.... +.+++++|+++.++. .++++++||+|++.++..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~ 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP----EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT----TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh
Confidence 4678999999999999998885421 235677777654421 245678999999865421
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCch
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDF 166 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~ 166 (231)
+++++.++|||||.+++.++.....
T Consensus 160 ---------~l~~~~~~L~pgG~l~~~~~~~~~~ 184 (269)
T 1p91_A 160 ---------KAEELARVVKPGGWVITATPGPRHL 184 (269)
T ss_dssp ---------CHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred ---------hHHHHHHhcCCCcEEEEEEcCHHHH
Confidence 4788999999999999987766544
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=91.40 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.++.. .+.+++||+|
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVG---ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAV 97 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHC---TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEE
Confidence 6678999999999999988873310 01244555555433210 1345789999
Q ss_pred EEeeeeeccC---------CCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 126 TLIFMLSAVS---------PKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 126 i~~~~l~~~~---------~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++...+ ++ .++...+++++.++|+|||.+++..+..
T Consensus 98 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 98 MFNLGY--LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEESB--CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEcCCc--ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 988654 21 1244679999999999999999986544
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-11 Score=90.38 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~~ 129 (231)
++.+|||+|||+|..+..++.... ..+++++|+++.++. ...+.++||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP----EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec
Confidence 468999999999999998873211 234555555543321 011357899999753
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+ .+...+++.+.+.|+|||.+++.
T Consensus 141 ----~--~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 141 ----F--ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----S--SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ----c--CCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 56789999999999999999886
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-11 Score=88.51 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------------------cCCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------SRNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------~~~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.. ..+++++|+++.++ ...+++++||+|+
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 124 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKII 124 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEE
Confidence 46789999999999999888743 12334444432211 0123457899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+...+++. .++...+++++.++|+|||.+++.+...
T Consensus 125 ~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 125 TNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp ECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred ECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 98887762 1567899999999999999999986444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=87.33 Aligned_cols=119 Identities=18% Similarity=0.054 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDV 124 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ 124 (231)
...++.+|||+|||+|.++..++.... ..-.++++|+++.++. .....++||+
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~---~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIE---LNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHT---TTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhC---CCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEE
Confidence 357899999999999999988873210 0114455555553310 0112368999
Q ss_pred EEEeeeeeccCCCCHHH-HHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHH
Q 045799 125 VTLIFMLSAVSPKKMPL-ILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLF 203 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~-~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 203 (231)
|++.... .+... +...+.+.|||||.+++......-... .. .. -..+...+.|
T Consensus 150 I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t--~~-----~~--------------e~~~~~~~~L 203 (232)
T 3id6_C 150 LYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVT--KD-----PK--------------EIYKTEVEKL 203 (232)
T ss_dssp EEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEEEC---------CC-----SS--------------SSTTHHHHHH
T ss_pred EEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccC--CC-----HH--------------HHHHHHHHHH
Confidence 9986432 33444 455666699999999987422210000 00 00 0123466778
Q ss_pred HHcCceEEEEEEE
Q 045799 204 LEAGFSTVDINIH 216 (231)
Q Consensus 204 ~~~Gf~~~~~~~~ 216 (231)
+++||++++....
T Consensus 204 ~~~gf~~~~~~~l 216 (232)
T 3id6_C 204 ENSNFETIQIINL 216 (232)
T ss_dssp HHTTEEEEEEEEC
T ss_pred HHCCCEEEEEecc
Confidence 8899999986643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-11 Score=96.95 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.. +.+++++|++..++.. ..++++||+|++.
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~------g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~n 305 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM------GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTN 305 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT------TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEEC
Confidence 46789999999999999999844 2355666666544321 2234799999999
Q ss_pred eeeec---cCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 129 FMLSA---VSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 129 ~~l~~---~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
..+|+ ...++...+++++.+.|+|||.+++...
T Consensus 306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 99888 2236678999999999999999999743
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-11 Score=89.84 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=57.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~ 124 (231)
..++.+|||+|||+|..+..++.... ..+++++|+++.++. .++ .++||+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~----~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~-~~~fD~ 129 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD----EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI-VEKVDL 129 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT----TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT-CCCEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC----CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhccc-ccceeE
Confidence 36788999999999999988874321 125677777764310 012 368999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|++.. .+ +++...++++++++|||||.+++.
T Consensus 130 V~~~~-~~---~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 130 IYQDI-AQ---KNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EEECC-CS---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEec-cC---hhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99862 11 234455699999999999999987
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=92.93 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=53.9
Q ss_pred EEEEeeeeeccCCCC-HHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHH
Q 045799 124 VVTLIFMLSAVSPKK-MPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTL 202 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~-~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (231)
.|+++.+|||+++++ +..+++++++.|+|||+|++++......... .. .+...+ ...+....+++.+++..+
T Consensus 163 av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~-~~----~~~~~~--~~~g~p~~~rs~~ei~~~ 235 (277)
T 3giw_A 163 ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQE-VG----RVAREY--AARNMPMRLRTHAEAEEF 235 (277)
T ss_dssp EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHH-HH----HHHHHH--HHTTCCCCCCCHHHHHHT
T ss_pred hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHH-HH----HHHHHH--HhcCCCCccCCHHHHHHH
Confidence 688999999996443 6899999999999999999998765421110 00 000000 000111245799999999
Q ss_pred HHHcCceEEEE
Q 045799 203 FLEAGFSTVDI 213 (231)
Q Consensus 203 l~~~Gf~~~~~ 213 (231)
|. ||++++-
T Consensus 236 f~--GlelveP 244 (277)
T 3giw_A 236 FE--GLELVEP 244 (277)
T ss_dssp TT--TSEECTT
T ss_pred hC--CCcccCC
Confidence 94 9997763
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-11 Score=87.31 Aligned_cols=91 Identities=13% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc------------cCC----------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------SRN---------------------- 116 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------~~~---------------------- 116 (231)
.++.+|||+|||+|.++..++.... ....+++++|+++... ..+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 98 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTK--NYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL 98 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTT--TSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcC--CCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHH
Confidence 5678999999999999998874321 0023567777765310 011
Q ss_pred ---CCCCCeeEEEEeeeeeccCC--CCH-------HHHHHHHHHhcCCCeEEEEEeccC
Q 045799 117 ---VNPSSVDVVTLIFMLSAVSP--KKM-------PLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 117 ---~~~~~fD~ii~~~~l~~~~~--~~~-------~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+++++||+|++...+++... .+. ..+++++.++|+|||.+++..+..
T Consensus 99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 34578999999887766321 111 247889999999999999865443
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.3e-11 Score=90.44 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~i 125 (231)
..++.+|||+|||+|.++..++.... ...+++++|+++.++. .++.+++||+|
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g---~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V 151 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVG---PDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVI 151 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEE
Confidence 46788999999999999998874310 0124556666532110 12235789999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++... .++....++.++.+.|||||.+++..
T Consensus 152 ~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 152 FADVA----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp EECCC----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCC----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 98443 22444667889999999999999953
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=90.68 Aligned_cols=82 Identities=22% Similarity=0.198 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecC-Cccccc-----------------------C-----------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNV-VNDDLS-----------------------R----------- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~-~~~~~~-----------------------~----------- 115 (231)
.++.+|||||||+|.++..++... ..+++++|+ ++.++. .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-----~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~ 152 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-----ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSP 152 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-----CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCT
T ss_pred cCCCeEEEecccccHHHHHHHHcC-----CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCcc
Confidence 456799999999999998877431 115566777 332210 0
Q ss_pred -CC----CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcC---C--CeEEEEE
Q 045799 116 -NV----NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLK---P--DGYILVC 159 (231)
Q Consensus 116 -~~----~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk---~--gG~l~i~ 159 (231)
.+ ++++||+|++..+++|. ++...+++.+.++|+ | ||.+++.
T Consensus 153 ~~~~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 153 DSLQRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HHHHhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 01 25789999999999988 789999999999999 9 9988764
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-11 Score=90.69 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii 126 (231)
..++.+|||+|||+|.++..++.... ...+++++|+++.++ ...+++++||+|+
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~ 167 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVG---PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVI 167 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhC---CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEE
Confidence 36788999999999999988873300 012344555543322 1135667899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+ +. .++..+++++.++|+|||.+++..... ....++.+.+++.
T Consensus 168 ~-----~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~~~~~~l~~~ 210 (255)
T 3mb5_A 168 L-----DL--PQPERVVEHAAKALKPGGFFVAYTPCS------------------------------NQVMRLHEKLREF 210 (255)
T ss_dssp E-----CS--SCGGGGHHHHHHHEEEEEEEEEEESSH------------------------------HHHHHHHHHHHHT
T ss_pred E-----CC--CCHHHHHHHHHHHcCCCCEEEEEECCH------------------------------HHHHHHHHHHHHc
Confidence 7 34 567789999999999999999864221 1235677888888
Q ss_pred C--ceEEEEE
Q 045799 207 G--FSTVDIN 214 (231)
Q Consensus 207 G--f~~~~~~ 214 (231)
| |..+++.
T Consensus 211 g~~f~~~~~~ 220 (255)
T 3mb5_A 211 KDYFMKPRTI 220 (255)
T ss_dssp GGGBSCCEEE
T ss_pred CCCccccEEE
Confidence 8 8666553
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.3e-11 Score=87.13 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. .+++++||+|
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i 117 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRG-----AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLV 117 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-----CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCC-----CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEE
Confidence 457899999999999998776421 1245666666544321 1346899999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHH--hcCCCeEEEEEeccCC
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKA--VLKPDGYILVCDYAIG 164 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~l~i~~~~~~ 164 (231)
++...+++. .++...+++.+.+ +|+|||++++......
T Consensus 118 ~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 118 LADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp EECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred EECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 998776653 1467889999999 9999999999765443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=86.16 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCC-CeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPS-SVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~-~fD~ii 126 (231)
+++.+|||||||+|.++..++.... ...++.+|+++.++.. +++.+ +||+|+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Iv 89 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQ----IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVIT 89 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEE
Confidence 6778999999999999999884321 2245666666544321 23333 699998
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
...+-..+ ...++....+.|+++|.+++... .....++++|.+.
T Consensus 90 iaG~Gg~~----i~~Il~~~~~~L~~~~~lVlq~~--------------------------------~~~~~vr~~L~~~ 133 (225)
T 3kr9_A 90 IAGMGGRL----IARILEEGLGKLANVERLILQPN--------------------------------NREDDLRIWLQDH 133 (225)
T ss_dssp EEEECHHH----HHHHHHHTGGGCTTCCEEEEEES--------------------------------SCHHHHHHHHHHT
T ss_pred EcCCChHH----HHHHHHHHHHHhCCCCEEEEECC--------------------------------CCHHHHHHHHHHC
Confidence 87654322 67789999999999999988621 1346889999999
Q ss_pred CceEEEEEE
Q 045799 207 GFSTVDINI 215 (231)
Q Consensus 207 Gf~~~~~~~ 215 (231)
||.+++...
T Consensus 134 Gf~i~~e~l 142 (225)
T 3kr9_A 134 GFQIVAESI 142 (225)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999998753
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=86.39 Aligned_cols=105 Identities=20% Similarity=0.149 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCC-CCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNP-SSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~-~~fD~ii 126 (231)
+++.+|||||||+|.++..++.... ...++++|+++.++.. .+.. ++||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Iv 95 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGY----CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTIT 95 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTC----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEE
Confidence 6788999999999999999884421 2245667766555421 1222 3799998
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
..++-..+ ...++....+.|+++|.+++.. ....+.++++|.+.
T Consensus 96 iaGmGg~l----I~~IL~~~~~~l~~~~~lIlqp--------------------------------~~~~~~lr~~L~~~ 139 (230)
T 3lec_A 96 ICGMGGRL----IADILNNDIDKLQHVKTLVLQP--------------------------------NNREDDLRKWLAAN 139 (230)
T ss_dssp EEEECHHH----HHHHHHHTGGGGTTCCEEEEEE--------------------------------SSCHHHHHHHHHHT
T ss_pred EeCCchHH----HHHHHHHHHHHhCcCCEEEEEC--------------------------------CCChHHHHHHHHHC
Confidence 87765543 6778889999999999998862 12457899999999
Q ss_pred CceEEEEEE
Q 045799 207 GFSTVDINI 215 (231)
Q Consensus 207 Gf~~~~~~~ 215 (231)
||.+++...
T Consensus 140 Gf~i~~E~l 148 (230)
T 3lec_A 140 DFEIVAEDI 148 (230)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999998764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=93.99 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... ..+++++|+++ ++. .++++++||+|+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g-----~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 138 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAG-----ARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIII 138 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTT-----CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHCC-----CCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEE
Confidence 567899999999999998887441 12556666662 221 145678999999
Q ss_pred Eeeeeecc-CCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 127 LIFMLSAV-SPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 127 ~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
+..+.+++ ....+..++..+.++|||||+++.
T Consensus 139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 97764444 247889999999999999999874
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=89.64 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii 126 (231)
..++.+|||+|||+|.++..++... ....+++++|+++.++ ..++++++||+|+
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi 184 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYAL---NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVI 184 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHH---TTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHc---CCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEE
Confidence 4677899999999999998887320 0012344444433211 1134557899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+ ++ .++..+++++.+.|+|||.+++.+... ...+.+.+.++++
T Consensus 185 ~-----~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~------------------------------~~~~~~~~~l~~~ 227 (275)
T 1yb2_A 185 A-----DI--PDPWNHVQKIASMMKPGSVATFYLPNF------------------------------DQSEKTVLSLSAS 227 (275)
T ss_dssp E-----CC--SCGGGSHHHHHHTEEEEEEEEEEESSH------------------------------HHHHHHHHHSGGG
T ss_pred E-----cC--cCHHHHHHHHHHHcCCCCEEEEEeCCH------------------------------HHHHHHHHHHHHC
Confidence 8 45 567889999999999999999875221 0234667778888
Q ss_pred CceEEEEEE
Q 045799 207 GFSTVDINI 215 (231)
Q Consensus 207 Gf~~~~~~~ 215 (231)
||..+++..
T Consensus 228 Gf~~~~~~~ 236 (275)
T 1yb2_A 228 GMHHLETVE 236 (275)
T ss_dssp TEEEEEEEE
T ss_pred CCeEEEEEE
Confidence 988777654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-10 Score=94.35 Aligned_cols=86 Identities=13% Similarity=0.232 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~i 125 (231)
.++.+|||+|||+|.++..++.... ..+++++|++..++. .++++++||+|
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p----~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~I 296 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAV 296 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEE
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCC----CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEE
Confidence 4458999999999999999883311 234555665544321 13456799999
Q ss_pred EEeeeeec---cCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSA---VSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~---~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++...+|+ +.......+++++.+.|+|||.+++..
T Consensus 297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 99988875 333445578999999999999999974
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.6e-11 Score=87.89 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.. ..+++++|+++.++. ...++++||+|++
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~ 149 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL------VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIV 149 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEE
Confidence 67889999999999999888733 123444444432221 1123578999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
..+++|+++ .+.+.|+|||++++....
T Consensus 150 ~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 150 TAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 999999952 578999999999987544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=94.38 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... ..+++++|++ .++.. +++ ++||+|+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g-----~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv 134 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAG-----ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVII 134 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTT-----CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCCEEEEeccCcCHHHHHHHhcC-----CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEE
Confidence 567899999999999998887541 1156677776 44311 223 7899999
Q ss_pred EeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+..+.+++. ...+..+++.+.+.|+|||++++..
T Consensus 135 ~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 135 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp ECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 976656554 3568889999999999999998643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.5e-10 Score=87.17 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecC----Ccccc--------------------cCCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNV----VNDDL--------------------SRNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~----~~~~~--------------------~~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... .++++|+ +..++ ...++.++||+|+
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~-------~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~ 153 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLK-------NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLL 153 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTST-------TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcC-------CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEE
Confidence 567899999999999998887541 2233333 11000 0022457899999
Q ss_pred Eeeeee---ccCCCCH--HHHHHHHHHhcCCCeEEEEEeccC
Q 045799 127 LIFMLS---AVSPKKM--PLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 127 ~~~~l~---~~~~~~~--~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+...++ +.. +.. ..++..+.++|||||.+++..+..
T Consensus 154 sd~~~~~g~~~~-d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 154 CDIGESSPNPTV-EAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp ECCCCCCSSHHH-HHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ECCccccCcchh-hHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 976653 211 111 157888999999999998866655
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=83.77 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-----ccceeeeeecCCccc-c-------cCC-------------CCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-----EERVNAFVCNVVNDD-L-------SRN-------------VNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-----~~~~~~~~~D~~~~~-~-------~~~-------------~~~~~fD~ 124 (231)
.++.+|||+|||+|.++..++...... ....+++++|+++.. . ... +++++||+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~ 100 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADV 100 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCCCcE
Confidence 567899999999999999887432100 001366777877533 1 001 12358999
Q ss_pred EEEeeeeeccCC--CCH-------HHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 125 VTLIFMLSAVSP--KKM-------PLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 125 ii~~~~l~~~~~--~~~-------~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
|++...+++... .+. ..+++++.++|+|||.+++.++...
T Consensus 101 V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 101 ILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred EEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 999665443210 112 4789999999999999999866543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-10 Score=85.39 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCC-CCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNP-SSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~-~~fD~ii 126 (231)
+++.+|||||||+|.++..++.... ...++++|+++.++.. .+.. ++||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iv 95 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQT----ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIV 95 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEE
Confidence 6788999999999999999884321 2245666666554321 2222 3599998
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
...+-..+ ...++....+.|+++|.+++.. ......++++|.+.
T Consensus 96 iagmGg~l----I~~IL~~~~~~L~~~~~lIlq~--------------------------------~~~~~~lr~~L~~~ 139 (244)
T 3gnl_A 96 IAGMGGTL----IRTILEEGAAKLAGVTKLILQP--------------------------------NIAAWQLREWSEQN 139 (244)
T ss_dssp EEEECHHH----HHHHHHHTGGGGTTCCEEEEEE--------------------------------SSCHHHHHHHHHHH
T ss_pred EeCCchHH----HHHHHHHHHHHhCCCCEEEEEc--------------------------------CCChHHHHHHHHHC
Confidence 87665433 6778899999999999998862 12356889999999
Q ss_pred CceEEEEEE
Q 045799 207 GFSTVDINI 215 (231)
Q Consensus 207 Gf~~~~~~~ 215 (231)
||.+++...
T Consensus 140 Gf~i~~E~l 148 (244)
T 3gnl_A 140 NWLITSEAI 148 (244)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999977653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.2e-10 Score=85.52 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc------c-------------c--c---CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND------D-------------L--S---RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~------~-------------~--~---~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++.. ..++++|+++. . + . ..+++++||+|+
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~-------~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~ 145 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR-------PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIM 145 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS-------TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc-------CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEE
Confidence 67889999999999999888744 13344554431 0 0 0 013467899999
Q ss_pred EeeeeeccCCCC---H--HHHHHHHHHhcCCCe--EEEEEeccC
Q 045799 127 LIFMLSAVSPKK---M--PLILQNIKAVLKPDG--YILVCDYAI 163 (231)
Q Consensus 127 ~~~~l~~~~~~~---~--~~~l~~~~~~Lk~gG--~l~i~~~~~ 163 (231)
+..+ ++.+... . ..++..+.++|+||| .+++..+.+
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~ 188 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCP 188 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCC
Confidence 9876 4432111 1 137899999999999 999877663
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.3e-10 Score=87.54 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=71.6
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
..++.+|||+|||+|.++..++.... ...+++++|+++.++. ..+++++||+|+
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~ 186 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVG---SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALF 186 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTT---TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEE
Confidence 35678999999999999988873210 0124455554432211 123557899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+ +. .++..++.++.++|+|||.+++.+... -...++.+.|++.
T Consensus 187 ~-----~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~------------------------------~~~~~~~~~l~~~ 229 (277)
T 1o54_A 187 L-----DV--PDPWNYIDKCWEALKGGGRFATVCPTT------------------------------NQVQETLKKLQEL 229 (277)
T ss_dssp E-----CC--SCGGGTHHHHHHHEEEEEEEEEEESSH------------------------------HHHHHHHHHHHHS
T ss_pred E-----CC--cCHHHHHHHHHHHcCCCCEEEEEeCCH------------------------------HHHHHHHHHHHHC
Confidence 8 33 567789999999999999999874221 0234667778889
Q ss_pred CceEEEEEE
Q 045799 207 GFSTVDINI 215 (231)
Q Consensus 207 Gf~~~~~~~ 215 (231)
||..+++..
T Consensus 230 gf~~~~~~~ 238 (277)
T 1o54_A 230 PFIRIEVWE 238 (277)
T ss_dssp SEEEEEEEC
T ss_pred CCceeEEEE
Confidence 998776543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-11 Score=103.66 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
..+.+|||||||+|.++..|+.. +.+++++|+++.++.. .+.+++||+|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK------GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhC------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEE
Confidence 45689999999999999999855 4577888888766531 2356799999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+|..+++|+++.+....+..+.+.|+++|..++...
T Consensus 139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred EECcchhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence 999999999422222334567777877777666543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-11 Score=97.05 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=64.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++... ...+++++|++..++.. ...+++||+|++..+
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~ 270 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHS----PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPP 270 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHC----TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCC
T ss_pred CCCCeEEEecCccCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCC
Confidence 346799999999999999887432 12355677766544321 223678999999999
Q ss_pred eecc---CCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 131 LSAV---SPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 131 l~~~---~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+|+. ..++...++++++++|+|||.+++....
T Consensus 271 ~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 271 FHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 8852 2256788999999999999999987543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=87.26 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=55.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------------CC--CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------------RN--VN 118 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------------~~--~~ 118 (231)
.++.+|||||||+|.++..++.... ...++++|++..++. .+ ++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~ 120 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFP----DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY 120 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGST----TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC
Confidence 5667899999999999999883311 224455555432210 01 45
Q ss_pred CCCeeEEEEeeeeeccC------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 119 PSSVDVVTLIFMLSAVS------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+++||.|++.+.-.+.. +-....++++++++|||||.+++..
T Consensus 121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 78999998754322220 0011479999999999999999874
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-10 Score=91.34 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... ..+++++|+++ ++. .++++++||+|+
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g-----~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 136 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAG-----AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVII 136 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTT-----CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred cCCCEEEEeeccCcHHHHHHHHcC-----CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEE
Confidence 567899999999999998887431 12456666653 221 134567999999
Q ss_pred Eeee---eeccCCCCHHHHHHHHHHhcCCCeEEE
Q 045799 127 LIFM---LSAVSPKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 127 ~~~~---l~~~~~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
+..+ +.+. ..+..++.++.++|||||.++
T Consensus 137 s~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 137 SEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEE
T ss_pred EcCchhhccCH--HHHHHHHHHHHhhcCCCcEEE
Confidence 8764 3333 667889999999999999997
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=88.50 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=92.0
Q ss_pred CCeEEEEcCCCCcchHHHhcC------ccc-------cccceeeeeecCCcccc--------------------------
Q 045799 73 PKVVLEVGCGAGNTIFPLVSH------SEF-------REERVNAFVCNVVNDDL-------------------------- 113 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~------~~~-------~~~~~~~~~~D~~~~~~-------------------------- 113 (231)
..+|+|+||++|.++..++.. ..+ ....++++..|+...++
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 588999999999999888721 111 23467788888763333
Q ss_pred ---------cCCCCCCCeeEEEEeeeeeccC--CCCH-----------------------------------HHHHHHHH
Q 045799 114 ---------SRNVNPSSVDVVTLIFMLSAVS--PKKM-----------------------------------PLILQNIK 147 (231)
Q Consensus 114 ---------~~~~~~~~fD~ii~~~~l~~~~--~~~~-----------------------------------~~~l~~~~ 147 (231)
...|+++++|+|+++.+||+++ ++.. ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1246889999999999999985 2121 12377779
Q ss_pred HhcCCCeEEEEEeccCCch--hhh---hhhccc-----c-ccccceEEeCCCeEEEeeCHHHHHHHHHHc-CceEEEEEE
Q 045799 148 AVLKPDGYILVCDYAIGDF--AQV---KLLDRN-----Q-MIGDSFYVRGDGTCSFYFSEDFLSTLFLEA-GFSTVDINI 215 (231)
Q Consensus 148 ~~Lk~gG~l~i~~~~~~~~--~~~---~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gf~~~~~~~ 215 (231)
+.|+|||.+++...+..+. ... .+.... . .+.+.- ...-....++.+.+++..+++++ +|++..++.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek-~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~ 291 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEK-LDSFNVPIYAPSTEEVKRIVEEEGSFEILYLET 291 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHH-HHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhh-hcccCCcccCCCHHHHHHHHHHcCCceEEEEEE
Confidence 9999999999987776554 200 000000 0 000000 00011123468999999999998 589999877
Q ss_pred Ee
Q 045799 216 HL 217 (231)
Q Consensus 216 ~~ 217 (231)
..
T Consensus 292 ~~ 293 (384)
T 2efj_A 292 FN 293 (384)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.3e-10 Score=84.86 Aligned_cols=122 Identities=8% Similarity=0.090 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
....+|||||||+|.++..++... ....+.++|+.+.+++. ..+.++||++++.-
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~----p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lk 206 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLP----AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLK 206 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCC----TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETT
T ss_pred CCCceeeeeccCccHHHHHHHhhC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHH
Confidence 457899999999999998887432 24467788888776542 33568999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+++|+..+.....+ ++.+.|+++|+++--+.-.-.-. ...+... | ...|.+.+.+.|+.
T Consensus 207 ti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Gr-------s~gm~~~------------Y-~~~~e~~~~~~g~~ 265 (281)
T 3lcv_B 207 TLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQR-------SKGMFQN------------Y-SQSFESQARERSCR 265 (281)
T ss_dssp CHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC--------------CHHHH------------H-HHHHHHHHHHHTCC
T ss_pred HHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCC-------CcchhhH------------H-HHHHHHHHHhcCCc
Confidence 99999644445666 99999999999876532110000 0011111 1 24788888888986
Q ss_pred EEEEEEEe
Q 045799 210 TVDINIHL 217 (231)
Q Consensus 210 ~~~~~~~~ 217 (231)
+.++...+
T Consensus 266 ~~~~~~~n 273 (281)
T 3lcv_B 266 IQRLEIGN 273 (281)
T ss_dssp EEEEEETT
T ss_pred eeeeeecC
Confidence 66654433
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.9e-10 Score=85.76 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------C-CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------R-NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~-~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++... .+++++|+++.++. . ...+++||+|++..
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 142 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV------DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA 142 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS------SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc------CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECC
Confidence 667899999999999998887321 13334443322110 0 11357899999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+++|++ .++.++|+|||.+++.....
T Consensus 143 ~~~~~~--------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 143 TAPTLL--------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp BBSSCC--------HHHHHTEEEEEEEEEEECSS
T ss_pred cHHHHH--------HHHHHHcCCCcEEEEEEcCC
Confidence 999984 36889999999999986443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=83.80 Aligned_cols=105 Identities=20% Similarity=0.149 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCc-c-c-----------------------cccceeeeeecCCcccccCCCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHS-E-F-----------------------REERVNAFVCNVVNDDLSRNVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~-~-~-----------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ 124 (231)
..++.+|||+|||+|.++..++... . . ...++.+...|+... ++++++||+
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~~~~~~~D~ 169 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA----ELEEAAYDG 169 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC----CCCTTCEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc----CCCCCCcCE
Confidence 3678899999999999998887321 0 0 001233333333211 356678999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHH
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFL 204 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 204 (231)
|++ +. .++..+++++.++|+|||.+++.+... -...++.+.++
T Consensus 170 v~~-----~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~~~~~~l~ 212 (258)
T 2pwy_A 170 VAL-----DL--MEPWKVLEKAALALKPDRFLVAYLPNI------------------------------TQVLELVRAAE 212 (258)
T ss_dssp EEE-----ES--SCGGGGHHHHHHHEEEEEEEEEEESCH------------------------------HHHHHHHHHHT
T ss_pred EEE-----CC--cCHHHHHHHHHHhCCCCCEEEEEeCCH------------------------------HHHHHHHHHHH
Confidence 998 34 567789999999999999999875221 02346677788
Q ss_pred HcCceEEEEEE
Q 045799 205 EAGFSTVDINI 215 (231)
Q Consensus 205 ~~Gf~~~~~~~ 215 (231)
+.||..+++..
T Consensus 213 ~~gf~~~~~~~ 223 (258)
T 2pwy_A 213 AHPFRLERVLE 223 (258)
T ss_dssp TTTEEEEEEEE
T ss_pred HCCCceEEEEE
Confidence 89998777654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-12 Score=98.09 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEEe
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~~ 128 (231)
++.+|||+|||+|.++..++.. +.+++++|+++.++.. ..++++||+|++.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~ 151 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLS 151 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEEC
T ss_pred CCCEEEECccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEEC
Confidence 6789999999999999999844 2355666666544321 1145799999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..+++. .+....+.+++++|+|||.+++.
T Consensus 152 ~~~~~~--~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 152 PPWGGP--DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CCCSSG--GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCcCCc--chhhhHHHHHHhhcCCcceeHHH
Confidence 999988 55555777899999999996654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-10 Score=84.79 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCC-CCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVN-PSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~-~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.++. ..++ +++||+|++
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 152 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVG---EDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYT 152 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC---TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEE
Confidence 6778999999999999988873320 0124455555433221 1222 568999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
..+++|++ .++.++|+|||.+++....
T Consensus 153 ~~~~~~~~--------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 153 TAAGPKIP--------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SSBBSSCC--------HHHHHTEEEEEEEEEEESS
T ss_pred CCchHHHH--------HHHHHHcCCCcEEEEEECC
Confidence 99999984 3789999999999987543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-09 Score=79.68 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc--c-------c-------------ccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE--F-------R-------------EERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~--~-------~-------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
..++.+|||+|||+|.++..++.... . + ..++.+...|+.......+ ..++||+|++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~D~v~~ 149 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRA-LVPKVDVIFE 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTT-TCCCEEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhc-ccCCceEEEE
Confidence 36778999999999999988873210 0 0 0123333444432111011 1358999997
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
... .+.....++.++.+.|||||.+++.
T Consensus 150 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 150 DVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 543 1233445599999999999999887
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-10 Score=81.69 Aligned_cols=84 Identities=8% Similarity=0.053 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CC--CCCCeeEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NV--NPSSVDVV 125 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~--~~~~fD~i 125 (231)
++.+|||+|||+|.++..++... ..++++|+++.++.. .. .+++||+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG------WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT------CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEE
Confidence 67899999999999999887441 125677776544311 00 12479999
Q ss_pred EEeeeeeccCCCCHHHHHHHHH--HhcCCCeEEEEEeccCCc
Q 045799 126 TLIFMLSAVSPKKMPLILQNIK--AVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~l~i~~~~~~~ 165 (231)
++...++ .....+++.+. ++|+|||.+++.......
T Consensus 115 ~~~~~~~----~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 115 FMAPPYA----MDLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp EECCCTT----SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred EECCCCc----hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 9987665 23445666666 999999999987655543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-09 Score=79.28 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------CC-------------C---CCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------NV-------------N---PSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------~~-------------~---~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.. ...++++|+++..... .+ . .++||+|++
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHc------CCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEec
Confidence 67899999999999999988754 2356677776532100 00 0 148999999
Q ss_pred eeeeeccCC---------CCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 128 IFMLSAVSP---------KKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 128 ~~~l~~~~~---------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
......... +....+++.+.++|||||.+++..+....
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 653221100 11356788999999999999987655443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-10 Score=91.16 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... ..+++++|+++ +.. .++ .++||+|+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g-----~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~~D~Iv 121 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAG-----ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-PEQVDIII 121 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTT-----CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-SSCEEEEE
T ss_pred CCcCEEEEcCCCccHHHHHHHhCC-----CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC-CCceeEEE
Confidence 467899999999999998887431 12455666553 211 011 26899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+..+++|+..+.....+..+.+.|+|||.+++.
T Consensus 122 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 122 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp ECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999988887677888899999999999999854
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-10 Score=83.95 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------------CCCCCCC-ee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------------RNVNPSS-VD 123 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------------~~~~~~~-fD 123 (231)
++.+|||+|||+|.++..++.... ..++++|+++.++. ..+++++ ||
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 127 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-----KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFD 127 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-----SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-----CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCC
Confidence 467999999999999988663311 13455555543321 0113568 99
Q ss_pred EEEEeeeeeccCCCCHHHHHHHH--HHhcCCCeEEEEEeccC
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNI--KAVLKPDGYILVCDYAI 163 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~--~~~Lk~gG~l~i~~~~~ 163 (231)
+|++...++ . .+...+++.+ .++|+|||.+++.....
T Consensus 128 ~I~~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 128 VVFLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEEECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EEEECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 999987744 3 6678889988 56799999999876444
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-10 Score=85.41 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCC----CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVN----PS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~----~~ 120 (231)
.++.+|||||||+|..+..++.... .+.+++++|+++.++.. .+. .+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 133 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQ---PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 133 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCC---CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCC
Confidence 4568999999999999999984321 12355666666544321 111 26
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+||+|++....++. .....++..+ ++|+|||++++.+...
T Consensus 134 ~fD~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 134 TLDMVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp CCSEEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred ceEEEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 89999998877766 4455677777 9999999999876443
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.4e-10 Score=88.52 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... ..+++++|++ .++. .++++++||+|+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g-----~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 110 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHG-----AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIII 110 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTC-----CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred cCCCEEEEecCccHHHHHHHHHCC-----CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEE
Confidence 456899999999999998887431 1245666665 2221 134557899999
Q ss_pred EeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEE
Q 045799 127 LIFMLSAVS-PKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 127 ~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
+..+.+++. ...+..++..+.+.|+|||.++.
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 976544442 36788999999999999999973
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=87.24 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------C-C-----CCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------N-V-----NPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~-~-----~~~~ 121 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++.. . . .+++
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~------ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~ 225 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGST 225 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred CCCCcEEEcccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCC
Confidence 45679999999999999998843 2255667766544321 0 0 1468
Q ss_pred eeEEEEee----------eeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 122 VDVVTLIF----------MLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 122 fD~ii~~~----------~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
||+|++.- ++++. ++...++..+.++|+|||.+++...
T Consensus 226 fD~Ii~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 226 YDIILTDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp BSEEEECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ceEEEECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 99999932 22333 4578899999999999999877643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-09 Score=81.55 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc--------------------c-----c--ccceeeeeecCCcccc---cCCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE--------------------F-----R--EERVNAFVCNVVNDDL---SRNVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~--------------------~-----~--~~~~~~~~~D~~~~~~---~~~~~~~ 120 (231)
.++.+|||+|||+|.++..++.... . . ..++.++..|+..... ...++++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 5678999999999999988872210 0 0 0124555555543210 0124567
Q ss_pred CeeEEEEeeee----------------eccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 121 SVDVVTLIFML----------------SAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 121 ~fD~ii~~~~l----------------~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+||+|+++-.+ .|........+++.+.++|+|||.+++.
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 99999997221 1222345788999999999999999885
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=4.5e-10 Score=89.72 Aligned_cols=81 Identities=19% Similarity=0.112 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++.... ...+++++|+++.++.. ...+++||+|++
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~ 150 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV 150 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCcCEEEEecCCchHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEE
Confidence 6788999999999999988873211 01234555555433210 113478999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
..+++|++ +.+.+.|||||++++....
T Consensus 151 ~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 151 TVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred cCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 99999984 5678999999999997543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=86.64 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii 126 (231)
..++.+|||+|||+|..+..++.... ....++++|++..++.. +..+++||+|+
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~---~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMR---NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKIL 192 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEE
Confidence 36778999999999999998873211 01244555555443210 11246899999
Q ss_pred Eee------eeeccCCC--------------CHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeC
Q 045799 127 LIF------MLSAVSPK--------------KMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRG 186 (231)
Q Consensus 127 ~~~------~l~~~~~~--------------~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (231)
+.. ++++.|.. ....+++++.++|||||.+++++.+.....
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~E------------------- 253 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEE------------------- 253 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGG-------------------
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHH-------------------
Confidence 842 23332210 025889999999999999998764432211
Q ss_pred CCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 187 DGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 187 ~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
....+...+++.||+++.+.
T Consensus 254 --------ne~~v~~~l~~~~~~~~~~~ 273 (315)
T 1ixk_A 254 --------NEFVIQWALDNFDVELLPLK 273 (315)
T ss_dssp --------THHHHHHHHHHSSEEEECCC
T ss_pred --------hHHHHHHHHhcCCCEEecCC
Confidence 23455666777787776553
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=82.81 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CC-CCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NV-NPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~-~~~~fD~ii~~~ 129 (231)
++.+|||||||+|..+..++..........+++++|+++.++.. +. .+.+||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 45799999999999999887431000112355666666554321 11 123799999866
Q ss_pred eeeccCCCCHHHHHHHHHH-hcCCCeEEEEEec
Q 045799 130 MLSAVSPKKMPLILQNIKA-VLKPDGYILVCDY 161 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~-~Lk~gG~l~i~~~ 161 (231)
. | .+...++.++.+ +|||||++++.+.
T Consensus 161 ~--~---~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A--H---ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S--C---SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c--h---HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 3 367889999997 9999999999764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=81.90 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVTL 127 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii~ 127 (231)
++.+|||+|||+|.++..++.... .+++++|+++.++.. +..+++||+|++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-----~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-----AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV 128 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-----SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-----CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence 468999999999999988663311 145566665544321 234578999998
Q ss_pred eeeeeccCCCCHHHHHHHHHH--hcCCCeEEEEEeccC
Q 045799 128 IFMLSAVSPKKMPLILQNIKA--VLKPDGYILVCDYAI 163 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~l~i~~~~~ 163 (231)
...++ . .....+++.+.+ +|+|||++++.....
T Consensus 129 ~~p~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 129 DPPFR-R--GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp CCSSS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCCCC-C--CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 76643 3 567788888876 499999999875443
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.3e-10 Score=83.91 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------C-CCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------N-VNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~-~~~~~fD~ 124 (231)
.++.+|||||||+|..+..++.... ..+++++|+++.++.. + ..+++||+
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISD----DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCT----TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccE
Confidence 4578999999999999999985211 2355666665433210 1 12578999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|++... ......+++.+.++|+|||++++.+..
T Consensus 146 V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 146 IFIDAA-----KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp EEEETT-----SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred EEEcCc-----HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 996532 367788999999999999999886543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=84.84 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc-------c------------c--c---CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND-------D------------L--S---RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~-------~------------~--~---~~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.. ..++++|+++. . + . ..+++++||+|+
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~-------~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vv 153 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ-------PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVL 153 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS-------TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHc-------CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEE
Confidence 57889999999999999888744 13344444431 0 0 0 013467899999
Q ss_pred EeeeeeccCCC---CH--HHHHHHHHHhcCCCe--EEEEEeccCC
Q 045799 127 LIFMLSAVSPK---KM--PLILQNIKAVLKPDG--YILVCDYAIG 164 (231)
Q Consensus 127 ~~~~l~~~~~~---~~--~~~l~~~~~~Lk~gG--~l~i~~~~~~ 164 (231)
+..+ ++.+.. .. ..++..+.++||||| .+++..+.+.
T Consensus 154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~ 197 (276)
T 2wa2_A 154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY 197 (276)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC
T ss_pred ECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence 9876 443211 11 137899999999999 9988776633
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=83.40 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------C-C----CCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------N-V----NPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~-~----~~~ 120 (231)
.++.+|||||||+|..+..++.... .+.+++++|+++.++.. + + .++
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~ 135 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALP---DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEH 135 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSC---TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCC
Confidence 4568999999999999999984321 13467788887765532 0 0 047
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+||+|++... ..+...+++++.++|+|||++++.+...
T Consensus 136 ~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 136 QFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp CEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred CEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 8999998653 2567789999999999999999976543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.8e-10 Score=81.16 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. +..+++|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~f 117 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRG-----MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQF 117 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCC
Confidence 457899999999999998877421 1245666665543310 1126789
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHH--HHhcCCCeEEEEEeccCCc
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNI--KAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~--~~~Lk~gG~l~i~~~~~~~ 165 (231)
|+|++...++ . ......++.+ .++|+|||.+++.......
T Consensus 118 D~i~~~~~~~-~--~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 118 DLVLLDPPYA-K--QEIVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp EEEEECCCGG-G--CCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred CEEEECCCCC-c--hhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 9999987644 2 4567777877 8889999999987654433
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-10 Score=80.67 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. +..+++||+|
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i 104 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRG-----MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLV 104 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTT-----CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEE
Confidence 457899999999999998887441 1255667766543211 1123579999
Q ss_pred EEeeeeeccCCCCHHHHHHHHH--HhcCCCeEEEEEeccCCc
Q 045799 126 TLIFMLSAVSPKKMPLILQNIK--AVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~l~i~~~~~~~ 165 (231)
++...++. .....+++.+. ++|+|||++++.......
T Consensus 105 ~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 105 FLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp EECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred EECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 99765532 34566777777 999999999997655443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-09 Score=84.85 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=94.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-----------cc-cccceeeeeecCCccccc------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-----------EF-REERVNAFVCNVVNDDLS------------------------ 114 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-----------~~-~~~~~~~~~~D~~~~~~~------------------------ 114 (231)
+...+|+|+||++|.++..+.... .. ....++++..|+...++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 445789999999999998777330 11 234567777775544432
Q ss_pred ---CCCCCCCeeEEEEeeeeeccC--CC-----------------------------CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 115 ---RNVNPSSVDVVTLIFMLSAVS--PK-----------------------------KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 115 ---~~~~~~~fD~ii~~~~l~~~~--~~-----------------------------~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
..++++++|+|+++.+||+++ ++ |+..+|+..++.|+|||.+++..
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 246889999999999999984 11 23456999999999999999987
Q ss_pred ccCCchhh--------h-hhhcccc-ccccceEEe----CCCeEEEeeCHHHHHHHHHHcC-ceEEEEEEEee
Q 045799 161 YAIGDFAQ--------V-KLLDRNQ-MIGDSFYVR----GDGTCSFYFSEDFLSTLFLEAG-FSTVDINIHLK 218 (231)
Q Consensus 161 ~~~~~~~~--------~-~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~~~ 218 (231)
.+..+... . .+..... ...+..... .-....++.+.+++...++++| |++..++....
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~ 282 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEI 282 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEee
Confidence 66654310 0 0000000 000000000 0012235678999999999985 58888876643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.4e-10 Score=90.12 Aligned_cols=89 Identities=11% Similarity=0.122 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc--------------------------------cCCC
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL--------------------------------SRNV 117 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~--------------------------------~~~~ 117 (231)
..++.+|||||||+|..+..++.... .-.++++|+++.++ ..++
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g----~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~ 246 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATN----CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW 246 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcc
Confidence 47889999999999999988873211 01245555553110 0011
Q ss_pred CC--CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 118 NP--SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 118 ~~--~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.+ ..||+|+++.++ +. ++....|.++++.|||||.+++.+...+.
T Consensus 247 ~d~~~~aDVVf~Nn~~-F~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 247 RERIANTSVIFVNNFA-FG--PEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp HHHHHTCSEEEECCTT-CC--HHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred ccccCCccEEEEcccc-cC--chHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 11 369999987664 33 57888899999999999999998755543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-09 Score=82.10 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CC-CCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NV-NPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~-~~~~fD 123 (231)
.++.+|||||||+|..+..++.... ...+++++|+++.++.. .+ ..++||
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD 138 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELP---ADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFD 138 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSC---TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred cCCCEEEEecCCchHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence 4678999999999999999984421 12356677766544321 11 134899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+|++... . .+...+++++.++|||||++++.+...
T Consensus 139 ~V~~d~~---~--~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 139 LIFIDAD---K--PNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EEEECSC---G--GGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EEEECCc---h--HHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 9998542 2 566789999999999999998876443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-10 Score=90.16 Aligned_cols=132 Identities=13% Similarity=-0.008 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------------cCCCC---CCC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------------SRNVN---PSS 121 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------------~~~~~---~~~ 121 (231)
++.+|||+|||+|.++..++.... ..+++++|+++.++ ..+++ +++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN----GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEII 140 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCc
Confidence 567999999999999888773210 12333444333221 11233 268
Q ss_pred eeEEEEeeeeeccCC-------------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCC
Q 045799 122 VDVVTLIFMLSAVSP-------------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG 188 (231)
Q Consensus 122 fD~ii~~~~l~~~~~-------------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (231)
||+|++.-.+++... +....++.+++++|||||.+.+.+....... .+.. ...+....
T Consensus 141 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~--~~l~-----~~g~~~~~-- 211 (254)
T 2h00_A 141 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL--QLKK-----RLRWYSCM-- 211 (254)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH--HHGG-----GBSCEEEE--
T ss_pred ccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH--hccc-----ceEEEEEC--
Confidence 999999754443320 1123567888999999998876532111100 0000 00111000
Q ss_pred eEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 189 TCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 189 ~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
.......+++.++|+++||+.+++....
T Consensus 212 -~~~~~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 212 -LGKKCSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp -ESSTTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred -CCChhHHHHHHHHHHHcCCCceEEEEEe
Confidence 0011234789999999999887765543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=79.35 Aligned_cols=82 Identities=11% Similarity=0.183 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
.++.+|||||||+|..+..++.... .+.+++++|+++.++.. +..++ ||+|
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v 130 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAIS---ISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDIL 130 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSC---TTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEE
Confidence 3567999999999999999884321 12355667766544310 22235 9999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++.. +..+...+++++.++|+|||++++.+.
T Consensus 131 ~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 131 FMDC-----DVFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp EEET-----TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred EEcC-----ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 9863 226788999999999999999988653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-09 Score=79.67 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCC----CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVN----PS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~----~~ 120 (231)
.++.+|||||||+|..+..++.... ...+++++|+++.++.. .+. .+
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALP---KDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCC
Confidence 4568999999999999999984321 12356677776544311 011 17
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+||+|++... ..+...+++.+.++|+|||++++.+...
T Consensus 140 ~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 140 QYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp CEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred CccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 8999996442 2567889999999999999999876543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=83.01 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc----------------------cCCCCC-CCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL----------------------SRNVNP-SSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~----------------------~~~~~~-~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++.... .+++++|+++.++ ..++++ .+||+|++
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIV 164 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC-----SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEE
Confidence 6678999999999999988873211 1334444433221 112333 35999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..++++++ .++.+.|+|||.+++.....
T Consensus 165 ~~~~~~~~--------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 165 TAGAPKIP--------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp CSBBSSCC--------HHHHHTEEEEEEEEEEECSS
T ss_pred CCcHHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 99998883 26789999999999875443
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-09 Score=86.77 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc--c-------------------c--------------ccceeeeeecCCcccccC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE--F-------------------R--------------EERVNAFVCNVVNDDLSR 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~--~-------------------~--------------~~~~~~~~~D~~~~~~~~ 115 (231)
.++.+|||+|||+|.++..++.... . . ..++.+...|+.... .
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~--~ 181 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT--E 181 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc--c
Confidence 6788999999999999988873210 0 0 012333333433211 1
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh--hhcc---------ccccccceEE
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK--LLDR---------NQMIGDSFYV 184 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~--~~~~---------~~~~~~~~~~ 184 (231)
++++++||+|++.. ..+..++.++.++|+|||.+++............ +... .......|..
T Consensus 182 ~~~~~~fD~V~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~ 254 (336)
T 2b25_A 182 DIKSLTFDAVALDM-------LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDWLV 254 (336)
T ss_dssp ------EEEEEECS-------SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCCCCEEE
T ss_pred ccCCCCeeEEEECC-------CCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEecccceEE
Confidence 23456899999842 2334488999999999999998765443221110 0000 0011111111
Q ss_pred eCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 185 RGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
.. . . ....+....|+++||+.+++....
T Consensus 255 ~~-~---~-~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 255 CL-A---K-QKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp CC-------------------------------
T ss_pred Ee-e---c-ccccchhhhhcccccccccccccc
Confidence 00 0 0 011278889999999999876654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-09 Score=85.62 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=57.2
Q ss_pred CeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEEEEe
Q 045799 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~ii~~ 128 (231)
.+|||||||+|..+..++... . .++++.+|+++.++.. .+++++||+|++.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~--p--~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY--P--QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD 166 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS--T--TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred CEEEEEECCcCHHHHHHHHHC--C--CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence 499999999999999988421 1 2244555555443211 2346789999986
Q ss_pred eeeeccCCCC--HHHHHHHHHHhcCCCeEEEEEecc
Q 045799 129 FMLSAVSPKK--MPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 129 ~~l~~~~~~~--~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
...+...+.. ...+++.++++|+|||++++....
T Consensus 167 ~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 167 VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 4333221112 268999999999999999887543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-09 Score=79.22 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CC---CCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NV---NPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~---~~~~ 121 (231)
.++.+|||||||+|..+..++.... .+.+++++|+++.++.. .+ ..++
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 133 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLS---SGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEP 133 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCC---SSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 4678999999999999999984421 12356777776544321 00 0157
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
||+|++.... .....+++.+.++|+|||++++.+...
T Consensus 134 fD~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 134 FDFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp CSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred cCEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9999986542 456789999999999999998875443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-09 Score=81.31 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=33.1
Q ss_pred CCCeeEEEEeeeeeccCC-------CCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 119 PSSVDVVTLIFMLSAVSP-------KKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
.++||+|++...+.+... +....+++++.++|+|||++++...
T Consensus 166 ~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 166 GSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp TCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCc
Confidence 348999999876665521 2345899999999999999998543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-08 Score=73.84 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------CCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------NVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------~~~~~~fD~ii~~~~l~~~ 134 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. .++ ++||+|++...+++.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~-~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLG-----AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS-GKYDTWIMNPPFGSV 123 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTT-----BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC-CCEEEEEECCCC---
T ss_pred CCCCEEEEEeCCccHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC-CCeeEEEECCCchhc
Confidence 467899999999999998887441 1245677766544321 122 689999999999988
Q ss_pred CCCCHHHHHHHHHHhc
Q 045799 135 SPKKMPLILQNIKAVL 150 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~L 150 (231)
+......+++++.+.+
T Consensus 124 ~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 124 VKHSDRAFIDKAFETS 139 (200)
T ss_dssp ----CHHHHHHHHHHE
T ss_pred cCchhHHHHHHHHHhc
Confidence 5444567899999998
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=82.66 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCC--CCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVN--PSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~--~~~fD 123 (231)
.++.+|||+|||+|..+..++.... ..+++++|+++.++.. +.. +++||
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALP----EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCT----TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCcc
Confidence 4578999999999999988874321 2244555554332210 111 46899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+|++.... .+...+++.+.++|+|||.+++.+..
T Consensus 129 ~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 129 VLFIDAAK-----GQYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp EEEEEGGG-----SCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 99986643 46788999999999999999997543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.5e-09 Score=79.41 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCC-CCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNV-NPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~-~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.. ..+++++|+++.++. ..+ ++++||+|+
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 163 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV------AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAF 163 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEE
Confidence 57789999999999999888743 123445554432211 122 456899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+ +. .++..+++.+.++|+|||.+++...
T Consensus 164 ~-----~~--~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 164 V-----DV--REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp E-----CS--SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred E-----CC--cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7 33 4677899999999999999998754
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-09 Score=79.77 Aligned_cols=81 Identities=10% Similarity=0.128 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------------CCCCCCCeeEE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------------RNVNPSSVDVV 125 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------------~~~~~~~fD~i 125 (231)
+.+|||||||+|..+..++... ..+.+++++|+++.++. ..+++++||+|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGL---ADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHS---CTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhC---CCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 4599999999999999887321 01224556665544321 02236799999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++... ..+...+++.+.++|+|||++++.+.
T Consensus 134 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 134 FGQVS-----PMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp EECCC-----TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred EEcCc-----HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 88542 25677899999999999999998643
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-09 Score=80.63 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||||||+|.++..++ ....+.++|+++.++.. ..+.++||+|++.-
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-------~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk 176 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-------GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFK 176 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-------TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEES
T ss_pred CCCCeEEEecCCccHHHHHhc-------cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHH
Confidence 457899999999999998877 13466777877766532 22446999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++||+...+....+ ++...|+++|+++..
T Consensus 177 ~lh~LE~q~~~~~~-~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 177 LLPLLEREQAGSAM-ALLQSLNTPRMAVSF 205 (253)
T ss_dssp CHHHHHHHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred HHHHhhhhchhhHH-HHHHHhcCCCEEEEc
Confidence 99999644555555 888899999888664
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.80 E-value=8.8e-09 Score=79.15 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc-------------------------------cccceeeeeecCCcccccCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF-------------------------------REERVNAFVCNVVNDDLSRNVNP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~-------------------------------~~~~~~~~~~D~~~~~~~~~~~~ 119 (231)
.++.+|||||||+|.++..++..... .-.++.++..|+... +...+..
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~-l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF-LPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC-GGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH-HHHhccc
Confidence 46789999999999999988732100 001334444444321 1112456
Q ss_pred CCeeEEEEeeeeeccCCCCH-----------HHHHHHHHHhcCCCeEEEEEe
Q 045799 120 SSVDVVTLIFMLSAVSPKKM-----------PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~-----------~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+++|.|+..+ ++..+ ..++.++.++|+|||.+++..
T Consensus 127 ~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 7888888533 22221 489999999999999999863
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-09 Score=89.65 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=58.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------------CCC----
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------------RNV---- 117 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------------~~~---- 117 (231)
..++.+|||||||+|.++..++.... ...++++|++..++. ..+
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g----~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECG----CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN 315 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence 36788999999999999998874211 012344444322100 011
Q ss_pred ----CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 118 ----NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 118 ----~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
..++||+|++..++ +. ++...+++++.+.|||||.+++.+..
T Consensus 316 ~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp HHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred ccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 13589999987665 33 56788899999999999999998533
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.5e-09 Score=82.37 Aligned_cols=86 Identities=23% Similarity=0.288 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------------CCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------------RNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------------~~~~~~~f 122 (231)
.++.+|||||||+|..+..++.... ..+++++|+++.++. .+..+++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~f 169 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS----VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCc
Confidence 4568999999999999999984421 123445554432210 01135789
Q ss_pred eEEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|++....+..+.. ....++++++++|+|||++++..
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 999996543322111 23678999999999999998865
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-09 Score=82.32 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
+++.+|||||||+|..+..++.... ..+++++|+++.++.. +..+++|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS----VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 152 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCc
Confidence 4568999999999999999974321 2244455544322110 1125789
Q ss_pred eEEEEeeeeeccCCCCH--HHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVSPKKM--PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~--~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|++....++.+.... ..+++.++++|+|||++++..
T Consensus 153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999654333222222 689999999999999998864
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-09 Score=83.53 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------------CCCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------------RNVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------------~~~~~~~ 121 (231)
.++.+|||||||+|..+..++.... ..+++++|+++.++. ...++++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~----~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS----IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCC
Confidence 4568999999999999999984321 224445554432210 0123578
Q ss_pred eeEEEEeeeeeccCCCC--HHHHHHHHHHhcCCCeEEEEE
Q 045799 122 VDVVTLIFMLSAVSPKK--MPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
||+|++......-+.+. ...+++.++++|+|||++++.
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99999855321111121 468999999999999999885
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.2e-08 Score=78.96 Aligned_cols=86 Identities=12% Similarity=0.075 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++.. +..++++|+++.++.. +...+.||+|++
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~------ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK------GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence 45889999999999999998853 2236788887766531 011334999998
Q ss_pred eeeeeccC-------CCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 128 IFMLSAVS-------PKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 128 ~~~l~~~~-------~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
.-....-. ..+...++..+.++|+|||.+++.+.+
T Consensus 287 dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 287 DPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 53210000 023467899999999999999876533
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.7e-09 Score=80.53 Aligned_cols=87 Identities=23% Similarity=0.284 Sum_probs=55.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---------------------------ccccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---------------------------FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+++.+|||||||+|..+..++.... +...+++++..|.... + +..+++||
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l--~~~~~~fD 150 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-I--AKSENQYD 150 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-H--HTCCSCEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-H--hhCCCCee
Confidence 4568999999999999999884311 0112233333333211 0 11357899
Q ss_pred EEEEeeeeeccCCCC--HHHHHHHHHHhcCCCeEEEEEe
Q 045799 124 VVTLIFMLSAVSPKK--MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|++....+..+... ...+++.+++.|+|||++++..
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999955433222111 3689999999999999998864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.3e-09 Score=78.34 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCC--C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNP--S 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~--~ 120 (231)
.++.+|||||||+|..+..++.... .+.+++++|+++.++.. +..+ +
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~ 147 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLP---PDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLP 147 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 3567999999999999999984321 12355666665443210 1112 7
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+||+|++... ..+...+++++.++|+|||++++.+...
T Consensus 148 ~fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 148 EFDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp CEEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred CcCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 8999997653 2567889999999999999999876443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=79.22 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CC----CCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NV----NPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~----~~~~fD 123 (231)
.++.+|||+|||+|..+..++.... ....++++|++..++.. +. ..++||
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMK---NKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcC---CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCC
Confidence 5778999999999999988874211 01245666666544321 11 256899
Q ss_pred EEEEee------eeeccC----------CCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 124 VVTLIF------MLSAVS----------PKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 124 ~ii~~~------~l~~~~----------~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+|++.. ++++-| .+....+++.+.+.|||||.+++++.+.
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 999863 222100 0456789999999999999999876444
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.6e-08 Score=76.89 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CC-CCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NV-NPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~-~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++.... ..+++++|+++.++.. .+ ..++||+|++.
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~----~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d 193 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSK----PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMG 193 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTC----CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEEC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEEC
Confidence 6778999999999999999884311 1244555555433210 01 14689999885
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
.. .....++..+.+.|+|||.+++.+...
T Consensus 194 ~p------~~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 194 YV------HKTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CC------SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred Cc------ccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 43 266778999999999999999886554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=84.45 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=59.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~ 124 (231)
..++.+|||+|||+|..+..++.... ....++++|++..++. ..+++++||+
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMK---NKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCE
Confidence 46778999999999999999874211 0123444554433221 0134478999
Q ss_pred EEE------eeeeeccC-------CCCH-------HHHHHHHHHhcCCCeEEEEEeccCC
Q 045799 125 VTL------IFMLSAVS-------PKKM-------PLILQNIKAVLKPDGYILVCDYAIG 164 (231)
Q Consensus 125 ii~------~~~l~~~~-------~~~~-------~~~l~~~~~~Lk~gG~l~i~~~~~~ 164 (231)
|++ ..++++.| +++. ..++..+.+.|||||.+++++.+..
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 997 22343331 1222 5789999999999999998875553
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-07 Score=71.09 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++... ...++++|+++.++.. .+ +++||+|++...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~D~v~~~~p 121 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-----AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-NSRVDIVIMNPP 121 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-CCCCSEEEECCC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc-CCCCCEEEEcCC
Confidence 467899999999999999887431 1145566665443210 12 248999999888
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
+++........+++.+.+.+ |+.+++. .... -+.+.+.+.+.+.||++
T Consensus 122 ~~~~~~~~~~~~l~~~~~~l--~~~~~~~-~~~~-----------------------------~~~~~~~~~l~~~g~~~ 169 (207)
T 1wy7_A 122 FGSQRKHADRPFLLKAFEIS--DVVYSIH-LAKP-----------------------------EVRRFIEKFSWEHGFVV 169 (207)
T ss_dssp CSSSSTTTTHHHHHHHHHHC--SEEEEEE-ECCH-----------------------------HHHHHHHHHHHHTTEEE
T ss_pred CccccCCchHHHHHHHHHhc--CcEEEEE-eCCc-----------------------------CCHHHHHHHHHHCCCeE
Confidence 77765455677899999988 5544332 1110 12345677788889887
Q ss_pred EEEEEEe
Q 045799 211 VDINIHL 217 (231)
Q Consensus 211 ~~~~~~~ 217 (231)
..+....
T Consensus 170 ~~~~~~~ 176 (207)
T 1wy7_A 170 THRLTTK 176 (207)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7665543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.8e-09 Score=82.70 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------------CCCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------------RNVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------------~~~~~~~ 121 (231)
+++.+|||||||+|..+..++.... ..+++++|+++.++. .+..+++
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~ 151 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT----VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEER 151 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCC
Confidence 4568999999999999999984321 123444444432210 0113578
Q ss_pred eeEEEEeeeeec---cCCCC--HHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLIFMLSA---VSPKK--MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~~~l~~---~~~~~--~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
||+|++....+. -+... ...+++.++++|+|||++++..
T Consensus 152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999999765543 11111 3789999999999999999864
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.2e-09 Score=82.40 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
.++.+|||||||+|..+..++.... ..+++++|+++.++.. +..+++|
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~f 182 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHES----VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 182 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT----CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCc
Confidence 4568999999999999999984321 2244455544322110 1135789
Q ss_pred eEEEEeeeeeccC-CCCH--HHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVS-PKKM--PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~-~~~~--~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|++... +++. .... ..+++.++++|+|||++++..
T Consensus 183 D~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 183 DVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred eEEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 99998553 3332 1222 689999999999999998864
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.75 E-value=5.7e-09 Score=79.19 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc--ccceeeeeecCCcccc---------------------------cCCCCC-C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR--EERVNAFVCNVVNDDL---------------------------SRNVNP-S 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~--~~~~~~~~~D~~~~~~---------------------------~~~~~~-~ 120 (231)
.++.+|||||||+|.++..++...... ....+++++|+++.++ ..++++ +
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 162 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA 162 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCC
Confidence 677899999999999998887421100 0012445555543321 012333 7
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+||+|++..++++++ +++.+.|||||.+++...
T Consensus 163 ~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 163 PYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp SEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 899999999988873 678999999999998754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9.9e-09 Score=81.95 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
.++.+|||||||+|..+..++.... ..+++++|+++.++.. +..+++|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 190 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS----VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 190 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCc
Confidence 4568999999999999999884321 2244555554332210 1124689
Q ss_pred eEEEEeeeeeccCCCCH--HHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVSPKKM--PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~--~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|++...-..-+.... ..+++.+++.|+|||++++..
T Consensus 191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99998643211111122 789999999999999999864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9e-09 Score=77.94 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=55.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------------CCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------------RNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------------~~~~~~~f 122 (231)
.++.+|||+|||+|..+..++.... ...+++++|+++.++. ....+++|
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 152 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVG---CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY 152 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCc
Confidence 6788999999999999988873210 0123444444332210 01235689
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|+|++...++++ +.++.++|||||.+++....
T Consensus 153 D~i~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 153 DAIHVGAAAPVV--------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEECSBBSSC--------CHHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCchHHH--------HHHHHHhcCCCcEEEEEEec
Confidence 999999888766 25788999999999987543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=74.13 Aligned_cols=110 Identities=9% Similarity=0.094 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++... ..+++++|+++..+.. -...+.||.|++
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g-----~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~ 198 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYG-----KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM 198 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHT-----CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc-----CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEE
Confidence 678999999999999999887321 1244555555443321 123568999987
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
.. +.....++..+.++|++||.+.+.++....... ....+.+.+..++.|
T Consensus 199 ~~------p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~------------------------~~~~e~i~~~~~~~g 248 (278)
T 3k6r_A 199 GY------VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYG 248 (278)
T ss_dssp CC------CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTT
T ss_pred CC------CCcHHHHHHHHHHHcCCCCEEEEEeeecccccc------------------------hhHHHHHHHHHHHcC
Confidence 43 134456888899999999998776543322110 013467788888999
Q ss_pred ceEEEEEE
Q 045799 208 FSTVDINI 215 (231)
Q Consensus 208 f~~~~~~~ 215 (231)
+++..+..
T Consensus 249 ~~v~~~~~ 256 (278)
T 3k6r_A 249 YDVEKLNE 256 (278)
T ss_dssp CEEEEEEE
T ss_pred CcEEEEEE
Confidence 98765543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=79.96 Aligned_cols=86 Identities=23% Similarity=0.239 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------------CCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------------RNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------------~~~~~~~f 122 (231)
.++.+|||||||+|..+..++.... ..+++++|+++.++. .+..+++|
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 164 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS----VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEF 164 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT----CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCc
Confidence 3458999999999999999984411 123444444432210 01135689
Q ss_pred eEEEEeeeeeccC-CC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVS-PK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~-~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|++...-+.+. .. ....+++.+++.|+|||++++..
T Consensus 165 D~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 165 DVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred eEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999854322121 11 23789999999999999999864
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-08 Score=78.79 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc--------------------------cCCCCCCCee
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL--------------------------SRNVNPSSVD 123 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~--------------------------~~~~~~~~fD 123 (231)
..++.+|||+|||+|.++..++.... ...+++++|+++.++ ..++++++||
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D 173 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVG---PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 173 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCcee
Confidence 36778999999999999988873210 011333344332110 1134567899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+|++ ++ .++..+++++.++|+|||.+++.....
T Consensus 174 ~v~~-----~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 174 RAVL-----DM--LAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp EEEE-----ES--SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EEEE-----CC--cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 9998 34 456789999999999999999976443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-09 Score=88.78 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||||||+|.++..++... ..+++++|++. ++. .++ .++||+|+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~-----~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~-~~~fD~Iv 229 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAG-----ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-PEQVDIII 229 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTT-----CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-SSCEEEEE
T ss_pred cCCCEEEEecCcccHHHHHHHHcC-----CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc-CCCeEEEE
Confidence 457899999999999998877421 22455666654 221 012 25899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
+..+++|+..++....+..+.+.|+|||.+++
T Consensus 230 s~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 230 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 98887887655667788899999999999985
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-08 Score=78.95 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------C-C-----CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------N-V-----NP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~-~-----~~ 119 (231)
.++.+|||||||+|..+..++... . .+.+++++|+++.++.. + + ++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~--~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~ 154 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAI--P-EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH 154 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHS--C-TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhC--C-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCC
Confidence 456799999999999999887421 1 12355666666543210 1 1 15
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++||+|++... ..+...+++.+.++|+|||++++.+.
T Consensus 155 ~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 155 GSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp TCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred CCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 78999998643 25678899999999999999988653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=81.60 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii~ 127 (231)
+++.|||||||+|.++...+... ..+++++|.+. +.. ..+ ++++|+||+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-----A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-pe~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-----ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-PEQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-----CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-SSCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-----CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-CccccEEEe
Confidence 57899999999998886655221 11345555542 211 022 368999998
Q ss_pred eeeeeccC-CCCHHHHHHHHHHhcCCCeEEEE
Q 045799 128 IFMLSAVS-PKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 128 ~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
-.+-..+. +..+..++....+.|+|||.++.
T Consensus 156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 54433332 35678889999999999999863
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.3e-08 Score=75.53 Aligned_cols=108 Identities=16% Similarity=0.017 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCCC------CcchHHHhcCccccccceeeeeecCCccccc------------CCCCCCCeeEEEEeeee
Q 045799 70 NGNPKVVLEVGCGA------GNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------RNVNPSSVDVVTLIFML 131 (231)
Q Consensus 70 ~~~~~~iLdvGcG~------G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------~~~~~~~fD~ii~~~~l 131 (231)
..++.+|||+|||+ |. ..++... .....++++|+++. +. .++ .++||+|++....
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~---~~~~~V~gvDis~~-v~~v~~~i~gD~~~~~~-~~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWL---PTGTLLVDSDLNDF-VSDADSTLIGDCATVHT-ANKWDLIISDMYD 133 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHS---CTTCEEEEEESSCC-BCSSSEEEESCGGGCCC-SSCEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHc---CCCCEEEEEECCCC-CCCCEEEEECccccCCc-cCcccEEEEcCCc
Confidence 36788999999955 54 2222111 11124556665543 10 111 3689999996432
Q ss_pred ec--------cC-CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHH
Q 045799 132 SA--------VS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTL 202 (231)
Q Consensus 132 ~~--------~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (231)
+. .. .+....+++.+.+.|||||.+++..+... ...++.++
T Consensus 134 ~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~------------------------------~~~~l~~~ 183 (290)
T 2xyq_A 134 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS------------------------------WNADLYKL 183 (290)
T ss_dssp CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS------------------------------CCHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC------------------------------CHHHHHHH
Confidence 11 10 12245789999999999999998643321 12367778
Q ss_pred HHHcCceEEEEE
Q 045799 203 FLEAGFSTVDIN 214 (231)
Q Consensus 203 l~~~Gf~~~~~~ 214 (231)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888888765543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-08 Score=76.39 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCC----CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVN----PS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~----~~ 120 (231)
.++.+|||+|||+|..+..++.... ...+++++|+++.++.. .+. .+
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALP---ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC---TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence 4568999999999999999884321 12355666766543210 011 16
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+||+|++... ......+++.+.++|+|||++++.+..
T Consensus 145 ~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 145 TFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp CEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred CccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 8999998543 366788999999999999999987543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-08 Score=79.77 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------C--------------C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------R--------------N 116 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~--------------~ 116 (231)
.++.+|||||||+|..+..++.. . ..+++++|+++.++. . +
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~----~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~ 148 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-D----VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 148 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C----CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhc
Confidence 45689999999999999998754 1 123445554432210 0 0
Q ss_pred CCCCCeeEEEEeeeeeccCCCC--HHHHHHHHHHhcCCCeEEEEEe
Q 045799 117 VNPSSVDVVTLIFMLSAVSPKK--MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 117 ~~~~~fD~ii~~~~l~~~~~~~--~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
. +++||+|++....+.-+... ...+++.+++.|+|||++++..
T Consensus 149 ~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 149 N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 1 46899999865432222122 3788999999999999998864
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-08 Score=76.33 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CCCCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NVNPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~~~~~fD~i 125 (231)
+.+.+|||||||+|..+..++.. . .++..+|+++.++.. .+. ++||+|
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-----~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~I 143 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-----THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLI 143 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-----CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEE
Confidence 45689999999999999988754 2 245566665443321 011 579999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++. . .++..+++.+++.|+|||++++..
T Consensus 144 i~d-----~--~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 144 FCL-----Q--EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp EES-----S--CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEC-----C--CChHHHHHHHHHhcCCCcEEEEEc
Confidence 985 2 345569999999999999998864
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.66 E-value=6e-08 Score=80.55 Aligned_cols=91 Identities=15% Similarity=0.244 Sum_probs=60.7
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------C--CCCCCeeE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------N--VNPSSVDV 124 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~--~~~~~fD~ 124 (231)
...++.+|||+|||+|..+..++.... +..++++|++...+.. + +++++||+
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 318 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 318 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCE
Confidence 346788999999999999999884321 1345666665543311 0 23468999
Q ss_pred EEEe------eeeeccCC-------CCH-------HHHHHHHHHhcCCCeEEEEEeccC
Q 045799 125 VTLI------FMLSAVSP-------KKM-------PLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 125 ii~~------~~l~~~~~-------~~~-------~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|++. .++++.|. ++. ..++..+.+.|||||.+++++.+.
T Consensus 319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9973 23333321 111 478999999999999999986544
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=9.7e-08 Score=77.83 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~ii 126 (231)
.++.+|||+|||+|.++..++.... ..+++++|+++.++. .++++++||+|+
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~----~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii 291 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRY----SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAI 291 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTC----CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEE
Confidence 5678999999999999998874422 114456666554432 134567999999
Q ss_pred EeeeeeccC--CCC----HHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHH
Q 045799 127 LIFMLSAVS--PKK----MPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLS 200 (231)
Q Consensus 127 ~~~~l~~~~--~~~----~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (231)
++-.+..-. ... ...+++.+.++| +|+.+++. .+.+.+.
T Consensus 292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~----------------------------------~~~~~~~ 336 (373)
T 3tm4_A 292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT----------------------------------TEKKAIE 336 (373)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE----------------------------------SCHHHHH
T ss_pred ECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE----------------------------------CCHHHHH
Confidence 965433211 112 266788888888 44444343 1446777
Q ss_pred HHHHHcCceEEEEEEE
Q 045799 201 TLFLEAGFSTVDINIH 216 (231)
Q Consensus 201 ~~l~~~Gf~~~~~~~~ 216 (231)
+.+.+.||++.+....
T Consensus 337 ~~~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 337 EAIAENGFEIIHHRVI 352 (373)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHcCCEEEEEEEE
Confidence 8888889988775443
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-08 Score=81.77 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=59.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------C-CCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------N-VNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~-~~~~~fD~ii 126 (231)
..++.+|||+|||+|..+..++.... . ...++++|++..++.. + ..+++||+|+
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~--~-~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMG--G-KGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTT--T-CSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCC--C-CCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEE
Confidence 36788999999999999999983211 1 1245666666544321 1 1257899999
Q ss_pred Ee------eeeeccCC-------CC-------HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 127 LI------FMLSAVSP-------KK-------MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 127 ~~------~~l~~~~~-------~~-------~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+. .++.+-|. ++ ...++..+.++|||||.++.++.+.
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 62 22322211 11 2678999999999999999875443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.6e-08 Score=74.73 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=56.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-------------------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL------------------------------------- 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~------------------------------------- 113 (231)
.++.+|||||||+|..+..++.... ...+++++|+++.++
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALP---EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSC---TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccc
Confidence 4578999999999999998873211 012334444433221
Q ss_pred --cCCCCC--CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 114 --SRNVNP--SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 114 --~~~~~~--~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
...+++ ++||+|++.... ++...+++.+.++|+|||++++.+.
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 011222 789999987543 4566899999999999999998753
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-08 Score=75.25 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-ccccceeeeeecCCccccc----------------------------CC----C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-FREERVNAFVCNVVNDDLS----------------------------RN----V 117 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-~~~~~~~~~~~D~~~~~~~----------------------------~~----~ 117 (231)
.++.+|||||||+|.++..++.... ......+++++|+++.++. .. .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 6678999999999999988874221 0001124455555432210 01 2
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
..++||+|++...++++ ++.+.++|+|||++++...
T Consensus 159 ~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 34689999999988876 3678999999999998754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.1e-08 Score=74.04 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CC-----CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NV-----NP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~-----~~ 119 (231)
.++.+|||||||+|..+..++.... .+.+++++|+++.++.. .+ +.
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~ 145 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIP---DDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESE 145 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSC---TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCC
Confidence 4567999999999999999873211 12245555555433210 01 25
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++||+|++... ..+...+++.+.++|+|||++++.+.
T Consensus 146 ~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 146 GSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp TCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 78999997532 24678899999999999999988654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-08 Score=79.83 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=55.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------------CCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------------NVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------------~~~~~~ 121 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. ....++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-----a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-----AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-----BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCC
Confidence 456899999999999999988421 1145566655544310 001358
Q ss_pred eeEEEEeeee-----eccC--CCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 122 VDVVTLIFML-----SAVS--PKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 122 fD~ii~~~~l-----~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
||+|++.-.. .+.. ......++..+.++|+|||.+++...
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9999984221 1221 02345577888999999999988753
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-08 Score=79.81 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------CC--CCCCeeE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------NV--NPSSVDV 124 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~~--~~~~fD~ 124 (231)
++.+|||+|||+|.++..++.. ..+++++|+++.++.. .+ .+++||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeE
Confidence 4679999999999999998743 1245566665443321 00 2568999
Q ss_pred EEEeeeeeccCC-------CCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 125 VTLIFMLSAVSP-------KKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 125 ii~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|++.-.....+. .....++..+.++|+|||.+++.+..
T Consensus 283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 998321111100 34567899999999999999987543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-08 Score=77.74 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCe---eEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSV---DVV 125 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~f---D~i 125 (231)
++.+|||+|||+|..+..++.. . ..+++++|+++.++.. ++ .++| |+|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~----~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-~~~f~~~D~I 196 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S----DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-KEKFASIEMI 196 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S----SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-GGGTTTCCEE
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-ccccCCCCEE
Confidence 5579999999999999988743 1 3355666666544321 11 1478 999
Q ss_pred EEee------------eeeccC------CCCHHHHHHHHH-HhcCCCeEEEEE
Q 045799 126 TLIF------------MLSAVS------PKKMPLILQNIK-AVLKPDGYILVC 159 (231)
Q Consensus 126 i~~~------------~l~~~~------~~~~~~~l~~~~-~~Lk~gG~l~i~ 159 (231)
+++- +. |-| ..+...+++++. +.|+|||.+++.
T Consensus 197 vsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 197 LSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp EECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 9961 22 221 112237899999 999999999875
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-08 Score=80.79 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~i 125 (231)
..++.+|||+|||+|..+..++.... . ...++++|++..++.. ...+++||+|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~--~-~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~I 179 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMK--G-KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRI 179 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHT--T-CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcC--C-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEE
Confidence 36788999999999999998873211 0 1245566666544321 1124689999
Q ss_pred EEeee---eeccC----------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 126 TLIFM---LSAVS----------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 126 i~~~~---l~~~~----------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++..- ...+. ++ ....++..+.++|||||.++.++.+.
T Consensus 180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 98431 11111 01 11378999999999999998876444
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-08 Score=79.72 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-ccceeeeeecCCcccccC---------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-EERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++...... ....+++++|+++.++.. +...++||+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 456899999999999998886321100 012466777776544311 2234789999998
Q ss_pred eeeeccCCCC---------------H-HHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVSPKK---------------M-PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~~~~---------------~-~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
-.+++++.++ . ..+++.+.+.|+|||++++..
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8776663221 1 268999999999999998875
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.1e-08 Score=77.47 Aligned_cols=87 Identities=15% Similarity=0.038 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++..|||+|||+|.++..++.... ....++++|+++.++. .+.+.+.||+|++
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~---~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~ 278 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLG---PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA 278 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHC---TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhC---CCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence 5678999999999999988874210 0234455555543331 1223467899999
Q ss_pred eeeeeccCC------CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IFMLSAVSP------KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~------~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.-....-.. +....+++.+.+.|+|||.+++.+
T Consensus 279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 544332110 113678999999999999999874
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=77.22 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------------CCCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------------RNVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------------~~~~~~~ 121 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++. ....+++
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-----~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~ 293 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-----CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCC
Confidence 456899999999999999998431 013444554432210 0001468
Q ss_pred eeEEEEeee---------eeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 122 VDVVTLIFM---------LSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 122 fD~ii~~~~---------l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
||+|++.-. .... .....++..+.+.|+|||.+++++.
T Consensus 294 fD~Ii~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 294 FDVIVMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EEEEEECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCEEEECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999998531 1222 5677899999999999999998753
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-07 Score=73.72 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++.. +.. ..+++++|+++.++.. .+. ++||+|++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~~------~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CKN------AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TTT------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-ccC------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEEC
Confidence 4678999999999999988 642 2355666666543321 112 689999973
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
- +.....++..+.++|+|||.+++.+...
T Consensus 266 p------P~~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 266 L------PKFAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp C------TTTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred C------cHhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 2 2334578999999999999998875444
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.8e-07 Score=72.83 Aligned_cols=81 Identities=11% Similarity=-0.042 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCC---CCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVN---PSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~---~~~fD~i 125 (231)
.++.+|||+| |+|.++..++.... ..+++++|+++.++. .+++ +++||+|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~----~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~V 245 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGL----PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTF 245 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTC----CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEE
Confidence 3578999999 99999988873210 123444454433321 0122 3589999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEE-EEE
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYI-LVC 159 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l-~i~ 159 (231)
++...++.. ....+++++.+.|+|||.+ ++.
T Consensus 246 i~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 246 ITDPPETLE---AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp EECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred EECCCCchH---HHHHHHHHHHHHcccCCeEEEEE
Confidence 998665443 2588999999999999954 443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.50 E-value=6.7e-08 Score=79.43 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------------C---CCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------------N---VNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------------~---~~~~~f 122 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. + ..+++|
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g-----~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~f 290 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAG-----ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 290 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCC
Confidence 367899999999999999998431 1145566655443210 0 025689
Q ss_pred eEEEEeeee---------eccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 123 DVVTLIFML---------SAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 123 D~ii~~~~l---------~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|+|++.-.. ++. .....++..+.++|+|||.+++.+.+
T Consensus 291 D~Vi~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 291 DIVVLDPPAFVQHEKDLKAGL--RAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp EEEEECCCCSCSSGGGHHHHH--HHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CEEEECCCCCCCCHHHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 999984221 111 34677899999999999999887543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=67.65 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCC--ccc---------------ccCCCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVV--NDD---------------LSRNVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~--~~~---------------~~~~~~~~~fD~ii~~~~l~~ 133 (231)
.++.+|||+|||+|.++..++............+++|.. +.+ -...+++++||+|++....+
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn- 151 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES- 151 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC-
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC-
Confidence 677899999999999998776331110000001111210 000 01245678999999976555
Q ss_pred cCC---CCHH--HHHHHHHHhcCCC-eEEEEEeccC
Q 045799 134 VSP---KKMP--LILQNIKAVLKPD-GYILVCDYAI 163 (231)
Q Consensus 134 ~~~---~~~~--~~l~~~~~~Lk~g-G~l~i~~~~~ 163 (231)
... +... .++..+.++|+|| |.|++..+.+
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 211 1111 3468889999999 9999987773
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9e-08 Score=84.02 Aligned_cols=83 Identities=11% Similarity=0.136 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~~~~fD~ 124 (231)
.++.+|||+|||+|.++..++... ..+++++|+++.++.. +...++||+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-----a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~ 612 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-----ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDL 612 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccE
Confidence 357899999999999999887421 1134556655544321 113468999
Q ss_pred EEEee-----------eeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 125 VTLIF-----------MLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 125 ii~~~-----------~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|++.- ++... .+...++..+.++|+|||.++++.
T Consensus 613 Ii~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 613 IFIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp EEECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99843 22333 456788999999999999999874
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.4e-07 Score=76.16 Aligned_cols=89 Identities=11% Similarity=0.207 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CC-CCCCeeEEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NV-NPSSVDVVTL 127 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~-~~~~fD~ii~ 127 (231)
++.+|||+|||+|..+..++.... ....++++|++..++.. +. .+++||+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~---~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMN---NEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTT---TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence 788999999999999999884211 01234555555443210 11 3468999998
Q ss_pred e------eeeeccCCC--------------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 128 I------FMLSAVSPK--------------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 128 ~------~~l~~~~~~--------------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
. .++.+.|.. ....++..+.++|||||+++.++.+.
T Consensus 194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 3 223332210 02478999999999999999886544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=9e-07 Score=73.15 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------CCCCCCeeEEEEeeeeec----
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------NVNPSSVDVVTLIFMLSA---- 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------~~~~~~fD~ii~~~~l~~---- 133 (231)
.++.+|||+|||+|.++..++.... ...+++++|+++.++.. ....++||+|+++=.+..
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~---~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHG---TAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHC---SCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhC---CCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEECcCccCcccc
Confidence 3456999999999999988873210 12356677776655431 123468999999522111
Q ss_pred ------cCCC-----------------CHHHHHHHHHHhcCCCeEEEEEec
Q 045799 134 ------VSPK-----------------KMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 134 ------~~~~-----------------~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++.+ -...+++.+.++|+|||.+++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 1100 122678999999999999988753
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-08 Score=77.01 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCC-CCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVN-PSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~-~~~fD~ii~~ 128 (231)
.++.+|||+|||+|.++..++... .+++++|+++.++.. +++ +++| .|+++
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~------~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n 100 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKIS------KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGN 100 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS------SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEe
Confidence 567899999999999999987321 234455544433211 223 2567 55553
Q ss_pred e-----------eeeccCCCCHHHHH----HHHHHhcCCCeEEEEE
Q 045799 129 F-----------MLSAVSPKKMPLIL----QNIKAVLKPDGYILVC 159 (231)
Q Consensus 129 ~-----------~l~~~~~~~~~~~l----~~~~~~Lk~gG~l~i~ 159 (231)
- ++.|. .....++ +.+.++|+|||.+.+.
T Consensus 101 ~Py~~~~~~~~~~~~~~--~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 101 IPYHLSTQIIKKVVFES--RASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp CCSSSCHHHHHHHHHHC--CCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred CCccccHHHHHHHHhCC--CCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 2 11222 2333344 6689999999998764
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-07 Score=73.74 Aligned_cols=21 Identities=48% Similarity=0.662 Sum_probs=19.2
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.++.+|||||||+|.++..++
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~ 47 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLL 47 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHH
T ss_pred CCCCEEEEEcCcccHHHHHHH
Confidence 567899999999999999998
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.7e-06 Score=68.29 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc------------------c---cccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE------------------F---REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~------------------~---~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++.... . .-.++.+...|+.......++.+++||+|++.
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d- 363 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD- 363 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC-
T ss_pred CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC-
Confidence 4668999999999999999984310 0 00123344444432111112345689999973
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
-|......+++.+.+ ++|+++++++
T Consensus 364 ----PPr~g~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 364 ----PARAGAAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp ----CCTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred ----CCCccHHHHHHHHHh-cCCCeEEEEE
Confidence 232333456665553 7899988886
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-06 Score=65.24 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++.... ...+.++|+...+. ...++.+++|+|++-.
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~g----v~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDm 164 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLKN----VKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDI 164 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC----CCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecC
Confidence 6778999999999999987763221 11223333321100 0134568999999976
Q ss_pred eeeccCC---CCHH--HHHHHHHHhcCCC--eEEEEEeccC
Q 045799 130 MLSAVSP---KKMP--LILQNIKAVLKPD--GYILVCDYAI 163 (231)
Q Consensus 130 ~l~~~~~---~~~~--~~l~~~~~~Lk~g--G~l~i~~~~~ 163 (231)
..+ ... +... .++.-+.++|+|| |.|++-.+.+
T Consensus 165 Apn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 165 GES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp CCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred ccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 655 211 1111 3577778999999 9999987773
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-06 Score=67.78 Aligned_cols=55 Identities=24% Similarity=0.365 Sum_probs=37.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||||||+|.++..++.. ..+++++|+++.++.. .++..+||+|++..
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~------~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~Vv~n~ 114 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPL------AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDVCTANI 114 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTT------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSEEEEEC
T ss_pred CCcCEEEEEcCcCcHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCEEEEcC
Confidence 56789999999999999999843 1245666665443210 12235899999865
Q ss_pred ee
Q 045799 130 ML 131 (231)
Q Consensus 130 ~l 131 (231)
..
T Consensus 115 py 116 (299)
T 2h1r_A 115 PY 116 (299)
T ss_dssp CG
T ss_pred Cc
Confidence 43
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-06 Score=69.57 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+|||+|.++..++... .+++++|+++.++.. .+...+||+|++.-
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~------~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~~fD~Vv~dP- 361 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG------FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDP- 361 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT------CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCTTCSEEEECC-
T ss_pred CCCCEEEEeeccchHHHHHHHHcC------CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCccCCCEEEEcC-
Confidence 567899999999999999988431 244555555433211 11123799999832
Q ss_pred eeccCCCCH-HHHHHHHHHhcCCCeEEEEEe
Q 045799 131 LSAVSPKKM-PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 131 l~~~~~~~~-~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|.... ..+++.+. .|+|+|+++++.
T Consensus 362 ----Pr~g~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 362 ----PRAGLHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp ----CTTCSCHHHHHHHH-HHCCSEEEEEES
T ss_pred ----CccchHHHHHHHHH-hcCCCcEEEEEC
Confidence 22222 34566655 589999999873
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-06 Score=71.81 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=56.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---cc------ccceeeeeecCCcccccC------------------------CC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---FR------EERVNAFVCNVVNDDLSR------------------------NV 117 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---~~------~~~~~~~~~D~~~~~~~~------------------------~~ 117 (231)
.++.+|||.|||+|.++..++.... .. ....+++++|+.+.++.. ..
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 5567999999999999887762210 00 012345566655432210 01
Q ss_pred CCCCeeEEEEeeeeeccCCCC---------------HHHHHHHHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKK---------------MPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~---------------~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+||+|+++-.+......+ ...+++.+.+.|+|||++++..
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 224899999976655432111 1378999999999999998765
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-05 Score=55.35 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCCCC-cchHHHhcCccccccceeeeeecCCccccc-------CCCCC--CCeeEEEEeeeeeccCCCCHH
Q 045799 71 GNPKVVLEVGCGAG-NTIFPLVSHSEFREERVNAFVCNVVNDDLS-------RNVNP--SSVDVVTLIFMLSAVSPKKMP 140 (231)
Q Consensus 71 ~~~~~iLdvGcG~G-~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------~~~~~--~~fD~ii~~~~l~~~~~~~~~ 140 (231)
.++.+|||||||+| ..+..|+.+. ++.++++|+++..+. .+..+ +.||+|.+.. |+.+++
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~-----g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsir-----PP~El~ 103 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS-----KVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIR-----PPAEIH 103 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS-----CCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEES-----CCTTTH
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC-----CCeEEEEECCccccceEEccCCCCcccccCCcCEEEEcC-----CCHHHH
Confidence 44679999999999 5998887422 456777887654321 12221 4899998865 678888
Q ss_pred HHHHHHHHhcCCCeEEEEEeccC
Q 045799 141 LILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 141 ~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
..+.++++.. |.-++|...+.
T Consensus 104 ~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 104 SSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp HHHHHHHHHH--TCEEEEECBTT
T ss_pred HHHHHHHHHc--CCCEEEEcCCC
Confidence 8888888754 45577765444
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.5e-05 Score=59.65 Aligned_cols=87 Identities=16% Similarity=0.104 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc---------------------cCCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL---------------------SRNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~---------------------~~~~~~~~fD~ii~~~ 129 (231)
.++.+|||+||++|.++..++.... ...+.++|+...+. ...+..+.+|+|++-.
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~g----v~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~ 155 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKE----VMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDI 155 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcC----CceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecC
Confidence 6789999999999999988885321 11233444432110 0123567899999965
Q ss_pred eeeccCC---CCH--HHHHHHHHHhcCCC-eEEEEEecc
Q 045799 130 MLSAVSP---KKM--PLILQNIKAVLKPD-GYILVCDYA 162 (231)
Q Consensus 130 ~l~~~~~---~~~--~~~l~~~~~~Lk~g-G~l~i~~~~ 162 (231)
..+ -.. +.. ..++.-+.++|+|| |.|++-.+.
T Consensus 156 APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 156 GES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 444 211 111 24477778999999 999998777
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.4e-06 Score=63.87 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=41.5
Q ss_pred CeeEEEEeee-eeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHH
Q 045799 121 SVDVVTLIFM-LSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFL 199 (231)
Q Consensus 121 ~fD~ii~~~~-l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (231)
.||+|+.-.. -...|+--...+++.++++|+|||+++.. +. ...+
T Consensus 173 ~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ty--sa--------------------------------a~~v 218 (257)
T 2qy6_A 173 KVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF--TS--------------------------------AGFV 218 (257)
T ss_dssp CEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEES--CC--------------------------------BHHH
T ss_pred eEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEE--eC--------------------------------CHHH
Confidence 7999998431 11111001357999999999999998752 11 1357
Q ss_pred HHHHHHcCceEEEEEEE
Q 045799 200 STLFLEAGFSTVDINIH 216 (231)
Q Consensus 200 ~~~l~~~Gf~~~~~~~~ 216 (231)
++.|.++||++.+....
T Consensus 219 rr~L~~aGF~v~~~~g~ 235 (257)
T 2qy6_A 219 RRGLQEAGFTMQKRKGF 235 (257)
T ss_dssp HHHHHHHTEEEEEECCS
T ss_pred HHHHHHCCCEEEeCCCC
Confidence 88889999998875443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.1e-06 Score=65.71 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.2
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.++.+|||||||+|.++..++
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~ 49 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELV 49 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEEeCCchHHHHHHH
Confidence 567899999999999999988
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1e-05 Score=63.49 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++.+|||||||+|.++..++.
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~ 70 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAK 70 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHH
T ss_pred CCcCEEEEECCCchHHHHHHHh
Confidence 5678999999999999999983
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.2e-05 Score=58.79 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc----------------------------cccccceeeeeecCCcccccCCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS----------------------------EFREERVNAFVCNVVNDDLSRNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~----------------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~f 122 (231)
++.++||-||.|.|..++.++.+. .+...+++++..|...-. .-..++|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l---~~~~~~y 158 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV---NQTSQTF 158 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT---SCSSCCE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH---hhccccC
Confidence 667899999999999999998332 122344555555544222 1245789
Q ss_pred eEEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|+.-..=..-+.. -...+++.+++.|+|||+++...
T Consensus 159 DvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 159 DVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 999985431111111 23579999999999999998753
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-05 Score=79.28 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-ccccceeeeeecCCcccc--------------------c-CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-FREERVNAFVCNVVNDDL--------------------S-RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-~~~~~~~~~~~D~~~~~~--------------------~-~~~~~~~fD~ii~~ 128 (231)
.+..+|||||.|+|..+..++.... ....-.++...|++...+ . .++....||+||+.
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 4567999999999998766542111 000112445555553322 0 12234679999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
+++|.. .+....+.+++++|||||.+++.+...... +. .. ..+.........++.+.++|.++|.++||
T Consensus 1319 ~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~----~g----~~-~~~~~~~~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1319 CALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGHP----LG----EM-VGFLTSPEQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp CC----------------------CCEEEEEEC-----------------------------------CTTTTSSTTTTE
T ss_pred cccccc--ccHHHHHHHHHHhcCCCcEEEEEecccccc----cc----cc-ccccccccccCCcccCHHHHHHHHHhCCC
Confidence 999876 678889999999999999998876432100 00 00 00100000011234677888999999999
Q ss_pred eEEEEE
Q 045799 209 STVDIN 214 (231)
Q Consensus 209 ~~~~~~ 214 (231)
..+...
T Consensus 1388 ~~~~~~ 1393 (2512)
T 2vz8_A 1388 HLVALK 1393 (2512)
T ss_dssp EEEEEE
T ss_pred ceeeec
Confidence 887653
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=7e-05 Score=58.71 Aligned_cols=64 Identities=19% Similarity=0.045 Sum_probs=45.4
Q ss_pred CCCCeeEEEEeeeeeccCCCCH----HHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKM----PLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFY 193 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~----~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
.+.++|+|+.-. +-|..++ ..+++.++++++|||.+.-.
T Consensus 183 ~~~~~Da~flDg---FsP~kNPeLWs~e~f~~l~~~~~pgg~laTY---------------------------------- 225 (308)
T 3vyw_A 183 ENFKADAVFHDA---FSPYKNPELWTLDFLSLIKERIDEKGYWVSY---------------------------------- 225 (308)
T ss_dssp CSCCEEEEEECC---SCTTTSGGGGSHHHHHHHHTTEEEEEEEEES----------------------------------
T ss_pred cccceeEEEeCC---CCcccCcccCCHHHHHHHHHHhCCCcEEEEE----------------------------------
Confidence 445789888754 1233444 58899999999999988542
Q ss_pred eCHHHHHHHHHHcCceEEEEEEEee
Q 045799 194 FSEDFLSTLFLEAGFSTVDINIHLK 218 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~~~~ 218 (231)
-....+++.|.++||+|.+..-.++
T Consensus 226 taag~VRR~L~~aGF~V~k~~G~g~ 250 (308)
T 3vyw_A 226 SSSLSVRKSLLTLGFKVGSSREIGR 250 (308)
T ss_dssp CCCHHHHHHHHHTTCEEEEEECC--
T ss_pred eCcHHHHHHHHHCCCEEEecCCCCC
Confidence 1235789999999999998876543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.67 E-value=6.5e-05 Score=57.77 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++.+|||||||+|.++..++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~ 49 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLT 49 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTT
T ss_pred CCcCEEEEEcccccHHHHHHHH
Confidence 5678999999999999999984
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=8.7e-05 Score=56.27 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeec--CCccc-------c-c-------CCCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCN--VVNDD-------L-S-------RNVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D--~~~~~-------~-~-------~~~~~~~fD~ii~~~~l~~ 133 (231)
.++.+|||+||++|.++...+.......-.-.++++| +.+.. + . ..+...++|+|+|-..-.
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~DvVLSDMAPn- 150 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIGES- 150 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCCSEEEECCCCC-
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCCCEEEeCCCCC-
Confidence 8899999999999999988875411111001123333 11110 0 0 012345899999955322
Q ss_pred cCCC--CH---HHHHHHHHHhcCCCe-EEEEEeccC
Q 045799 134 VSPK--KM---PLILQNIKAVLKPDG-YILVCDYAI 163 (231)
Q Consensus 134 ~~~~--~~---~~~l~~~~~~Lk~gG-~l~i~~~~~ 163 (231)
-+.. |. ..++.-+.+.|+||| .|++-.+..
T Consensus 151 SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 151 SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 1100 11 125666779999999 898887774
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.4e-05 Score=63.18 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc----------------------------------cccceeeeeecCCcccccC-
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF----------------------------------REERVNAFVCNVVNDDLSR- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~----------------------------------~~~~~~~~~~D~~~~~~~~- 115 (231)
.++..|||.+||+|.++...+....- ......++++|+++.++..
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 46789999999999998777621100 0112457888887766531
Q ss_pred ----------------------CCCCCCeeEEEEeeeee-cc-CCCCHHHHHHHHHHhcCC--CeEEEEEecc
Q 045799 116 ----------------------NVNPSSVDVVTLIFMLS-AV-SPKKMPLILQNIKAVLKP--DGYILVCDYA 162 (231)
Q Consensus 116 ----------------------~~~~~~fD~ii~~~~l~-~~-~~~~~~~~l~~~~~~Lk~--gG~l~i~~~~ 162 (231)
....++||+|+++=-.. .+ ..++...+++.+.+.||+ ||.+++.+..
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred HHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11235899999973221 11 113456677777777776 8888876543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.53 E-value=5.2e-05 Score=61.56 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCcchHHHhc
Q 045799 73 PKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~ 92 (231)
+.+|||+|||+|.++..++.
T Consensus 214 ~~~vLDl~cG~G~~~l~la~ 233 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR 233 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 57899999999999998873
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.53 E-value=4.2e-05 Score=62.48 Aligned_cols=92 Identities=5% Similarity=0.134 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc--------------c--------------------cccceeeeeecCCcccccC-
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE--------------F--------------------REERVNAFVCNVVNDDLSR- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~--------------~--------------------~~~~~~~~~~D~~~~~~~~- 115 (231)
.++..|||++||+|.++..++.... + ......++++|+++.++..
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 4678999999999999888762210 0 0112457788887766531
Q ss_pred ----------------------CCCCCCeeEEEEeeeee-ccC-CCCHHHHHHHHHHhcCC--CeEEEEEecc
Q 045799 116 ----------------------NVNPSSVDVVTLIFMLS-AVS-PKKMPLILQNIKAVLKP--DGYILVCDYA 162 (231)
Q Consensus 116 ----------------------~~~~~~fD~ii~~~~l~-~~~-~~~~~~~l~~~~~~Lk~--gG~l~i~~~~ 162 (231)
....++||+|+++=-.. .+. .++...+++.+.+.|++ |+.+++.+..
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred HHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 11236899999954322 111 13556778888888877 8888776543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.001 Score=53.42 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=48.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc----------------cCCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL----------------SRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~----------------~~~~~~~~fD~ii~~~~l~~~ 134 (231)
.++.++||+||++|.++..++.. +..++++|..+... ....+.+++|+|+|-.+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r------g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~---- 279 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR------NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMV---- 279 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT------TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCS----
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC------CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCC----
Confidence 78999999999999999988754 34677777653221 01234568999999443
Q ss_pred CCCCHHHHHHHHHHhcCCC
Q 045799 135 SPKKMPLILQNIKAVLKPD 153 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~g 153 (231)
..+..++..+.+.|..+
T Consensus 280 --~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 --EKPAKVAALMAQWLVNG 296 (375)
T ss_dssp --SCHHHHHHHHHHHHHTT
T ss_pred --CChHHhHHHHHHHHhcc
Confidence 34666666666666554
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.47 E-value=3.5e-05 Score=65.74 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc--ccc------------cceeeeeecCCccccc------------------C---
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE--FRE------------ERVNAFVCNVVNDDLS------------------R--- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~--~~~------------~~~~~~~~D~~~~~~~------------------~--- 115 (231)
.++.+|||.|||+|.++..++.... ... ....++++|+.+.++. .
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4578999999999998877752110 000 1124555555433211 0
Q ss_pred --------CCCCCCeeEEEEeeeeeccCC------------CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 116 --------NVNPSSVDVVTLIFMLSAVSP------------KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 116 --------~~~~~~fD~ii~~~~l~~~~~------------~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.....+||+|+++=.+..... .....+++.+.+.|+|||++.+..
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 012468999999654433211 112378999999999999988764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.47 E-value=9.5e-05 Score=60.29 Aligned_cols=92 Identities=8% Similarity=0.041 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc--------------c--------------------cccceeeeeecCCcccccC-
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE--------------F--------------------REERVNAFVCNVVNDDLSR- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~--------------~--------------------~~~~~~~~~~D~~~~~~~~- 115 (231)
.++..+||.+||+|.++...+.... + ......++++|++..++..
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 5678999999999999887762110 0 0112457788887766531
Q ss_pred ----------------------CCCCCCeeEEEEeeeee-cc-CCCCHHHHHHHHHHhcCC--CeEEEEEecc
Q 045799 116 ----------------------NVNPSSVDVVTLIFMLS-AV-SPKKMPLILQNIKAVLKP--DGYILVCDYA 162 (231)
Q Consensus 116 ----------------------~~~~~~fD~ii~~~~l~-~~-~~~~~~~~l~~~~~~Lk~--gG~l~i~~~~ 162 (231)
.....+||+|+++=-.. -+ ..++...+++.+.+.||+ ||.+++.+..
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred HHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 01235899999863321 12 124567788888888887 8888877543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=9.6e-05 Score=60.14 Aligned_cols=80 Identities=14% Similarity=0.029 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcccc-------------------------------------c-cceeeeeecCCcccc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFR-------------------------------------E-ERVNAFVCNVVNDDL 113 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~-------------------------------------~-~~~~~~~~D~~~~~~ 113 (231)
++.+|||+|||+|..+..++....-. . .++.++..|+...+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 46799999999999999887321100 0 012233333322111
Q ss_pred cCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 114 SRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 114 ~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
. ..++||+|++. |+-....++..+.+.|++||++++..
T Consensus 127 ~---~~~~fD~I~lD------P~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 E---RHRYFHFIDLD------PFGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp H---STTCEEEEEEC------CSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred h---ccCCCCEEEeC------CCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 0 13479998842 11234678999999999999888763
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.42 E-value=7.3e-05 Score=57.62 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=26.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN 110 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~ 110 (231)
.++.+|||+|||+|..+..++.. +.+++++|+++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~------g~~V~~vD~s~ 115 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL------GLTVTAFEQHP 115 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT------TCCEEEEECCH
T ss_pred CCcCeEEEeeCccCHHHHHHHHh------CCEEEEEECCh
Confidence 45689999999999999988853 23567777776
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=63.39 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcccc---------------------------ccceeeeeecCCcccccCCCCCCCeeE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFR---------------------------EERVNAFVCNVVNDDLSRNVNPSSVDV 124 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~---------------------------~~~~~~~~~D~~~~~~~~~~~~~~fD~ 124 (231)
....|||||||+|.++...+...... ...++++..|+..-. ..+++|+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~-----LPEKVDI 431 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWV-----APEKADI 431 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCC-----CSSCEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceecc-----CCcccCE
Confidence 44679999999998854444111111 223445555553221 2378999
Q ss_pred EEEeeeeecc-CCCCHHHHHHHHHHhcCCCeEEE
Q 045799 125 VTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 125 ii~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
||+-.+ .++ ..+-...++....+.|||||.++
T Consensus 432 IVSEwM-G~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 432 IVSELL-GSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EECCCC-BTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEcC-cccccccCCHHHHHHHHHhcCCCcEEc
Confidence 999432 222 12445567888889999999975
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=62.85 Aligned_cols=104 Identities=10% Similarity=0.029 Sum_probs=60.6
Q ss_pred chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcc--c---------cccceeeeeecCCccccc----
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSE--F---------REERVNAFVCNVVNDDLS---- 114 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~--~---------~~~~~~~~~~D~~~~~~~---- 114 (231)
.+..+...+.+++. +...+|||.+||+|.++..++.... . ......+.++|+.+.+..
T Consensus 229 TP~~Vv~lmv~ll~-------p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~ 301 (544)
T 3khk_A 229 TPKSIVTLIVEMLE-------PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM 301 (544)
T ss_dssp CCHHHHHHHHHHHC-------CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-------cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence 44455555554442 2234999999999998877641100 0 001345566665543321
Q ss_pred --------------------C-CCCCCCeeEEEEeeeeec-------------------------cCCC--CHHHHHHHH
Q 045799 115 --------------------R-NVNPSSVDVVTLIFMLSA-------------------------VSPK--KMPLILQNI 146 (231)
Q Consensus 115 --------------------~-~~~~~~fD~ii~~~~l~~-------------------------~~~~--~~~~~l~~~ 146 (231)
. .+.+.+||+|+++=-+.. +++. .--.+++.+
T Consensus 302 Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~ 381 (544)
T 3khk_A 302 NMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM 381 (544)
T ss_dssp HHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred HHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence 0 123568999999432221 1111 112689999
Q ss_pred HHhcCCCeEEEEEe
Q 045799 147 KAVLKPDGYILVCD 160 (231)
Q Consensus 147 ~~~Lk~gG~l~i~~ 160 (231)
.+.|+|||++.+..
T Consensus 382 l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 382 LYHLAPTGSMALLL 395 (544)
T ss_dssp HHTEEEEEEEEEEE
T ss_pred HHHhccCceEEEEe
Confidence 99999999987764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=59.36 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcccc-------------------------ccc-eeeeeecCCcccccCCCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFR-------------------------EER-VNAFVCNVVNDDLSRNVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~-------------------------~~~-~~~~~~D~~~~~~~~~~~~~~fD~ 124 (231)
.++.+|||++||+|.++..++.....+ ... +.++..|+..... . ...++||+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~-~-~~~~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLR-K-EWGFGFDY 128 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHH-S-CCSSCEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHH-H-hhCCCCcE
Confidence 356899999999999999887421100 001 3333333321110 0 11357999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|++.- . .....++..+.+.|++||++++..
T Consensus 129 V~lDP----~--g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP----F--GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEECC----S--SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC----C--cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 98743 1 234568999999999999888764
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=56.68 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH 93 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~ 93 (231)
.++ +|||||||+|.++..++..
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~ 67 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEA 67 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHT
T ss_pred CCC-eEEEEeCchHHHHHHHHHc
Confidence 556 9999999999999999843
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.35 E-value=4e-05 Score=66.32 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=27.2
Q ss_pred CCCeeEEEEeeeeecc-CCCCHHHHHHHHHHhcCCCeEEE
Q 045799 119 PSSVDVVTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
.++.|+||+-.+ .++ ..+-...+|..+.+.|||||.++
T Consensus 493 ~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 493 FEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp CCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 578999999554 333 22334567888889999999875
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0017 Score=50.26 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~~~fD~ii~~~ 129 (231)
.++..|||+||++|.++...+.... ...+.++|+-..... ..++..++|+|+|--
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~g----v~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ivcDi 168 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQKR----VQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDI 168 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCTT----EEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSEEEECC
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhcC----CCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCEEEEEC
Confidence 6778999999999999987774432 114566666554111 123447799999865
Q ss_pred eeeccCCC--CH---HHHHHHHHHhcCCC-eEEEEEeccCC
Q 045799 130 MLSAVSPK--KM---PLILQNIKAVLKPD-GYILVCDYAIG 164 (231)
Q Consensus 130 ~l~~~~~~--~~---~~~l~~~~~~Lk~g-G~l~i~~~~~~ 164 (231)
. +.-+.. +. ..+|..+.+.|+++ |-+++-.+.+.
T Consensus 169 g-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 169 G-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred c-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 5 333211 11 23677778999998 88888777773
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=57.05 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++.+|||||||+|.++..++.
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~ 62 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIA 62 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHH
T ss_pred CCcCEEEEEccccHHHHHHHHH
Confidence 5678999999999999999984
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0014 Score=50.19 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=26.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDD 112 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~ 112 (231)
.++.+|||||||+|.++..++... ..+++++|+++.+
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~~-----~~~v~avEid~~~ 66 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQHP-----LKKLYVIELDREM 66 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTSC-----CSEEEEECCCHHH
T ss_pred CCcCEEEEEcCchHHHHHHHHHcC-----CCeEEEEECCHHH
Confidence 567899999999999999998441 1244555555433
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00089 Score=52.90 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.1
Q ss_pred CCCCCeEEEEcCCCCcchHHHhc
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
..++.+|||+|||+|..+..++.
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~ 122 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAA 122 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHH
T ss_pred CCCCCEEEEeCCChhHHHHHHHH
Confidence 36788999999999999998873
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0055 Score=45.94 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++..|||+||++|.++...+..... ..+.++|+-....+. ..+..++|+|+|-.
T Consensus 77 ~~g~~VvDLGaapGGWSq~~a~~~g~----~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~DtllcDI 152 (267)
T 3p8z_A 77 IPEGRVIDLGCGRGGWSYYCAGLKKV----TEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDI 152 (267)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTE----EEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCEEEEcCCCCCcHHHHHHHhcCC----CEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccccEEEEec
Confidence 67889999999999999877744321 144555554332221 23457899999954
Q ss_pred eeeccCCC-CH---HHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 130 MLSAVSPK-KM---PLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 130 ~l~~~~~~-~~---~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.=..=.+. |. ..+|.-+.+.|++ |-+++-.+.+..
T Consensus 153 geSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 153 GESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred CCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 32111000 11 2366667788988 788887777766
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0019 Score=54.93 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-------------------------cC--C-CCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-------------------------SR--N-VNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-------------------------~~--~-~~~~~f 122 (231)
.++.+|||.+||+|.++..++.... ......+.+.|+..... .. + ....+|
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~-~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSR-QPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCS-CTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCEEeecccchhHHHHHHHHHHH-hccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 4678999999999999887752210 00122334444332211 00 1 235789
Q ss_pred eEEEEeeeee--c-----------------cCC--CCHHHHHHHHHHhcC-CCeEEEEEe
Q 045799 123 DVVTLIFMLS--A-----------------VSP--KKMPLILQNIKAVLK-PDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~--~-----------------~~~--~~~~~~l~~~~~~Lk-~gG~l~i~~ 160 (231)
|+|+++=-+. . +++ ..--.+++.+.+.|+ +||++.+..
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 9999852111 0 110 011258999999999 999987754
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=58.32 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------------CCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------------NVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------------~~~~~ 120 (231)
.++.+|||.|||+|.++..++..... ....++.+.|+.+..+.. .....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~e-i~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNN-VMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTT-CCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcc-cCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 45789999999999999887743210 012344566655432110 11246
Q ss_pred CeeEEEEeeeeec-cC-------------------C-------CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 121 SVDVVTLIFMLSA-VS-------------------P-------KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 121 ~fD~ii~~~~l~~-~~-------------------~-------~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+||+|+++=-+.. .. + +-...+++.+.+.|++||++.+..
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 8999999543311 00 0 113457889999999999998764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00081 Score=59.12 Aligned_cols=91 Identities=9% Similarity=0.037 Sum_probs=54.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc----------ccc----------------------------ccceeeeeecCCccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS----------EFR----------------------------EERVNAFVCNVVNDD 112 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~----------~~~----------------------------~~~~~~~~~D~~~~~ 112 (231)
.++..|||.+||+|.++...+... .|. .....++++|+++.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 467899999999999988776211 000 112467788887766
Q ss_pred ccC--------------------------CCCCCCeeEEEEeeee--eccCCCCHHHHHHHHHHhc---CCCeEEEEEec
Q 045799 113 LSR--------------------------NVNPSSVDVVTLIFML--SAVSPKKMPLILQNIKAVL---KPDGYILVCDY 161 (231)
Q Consensus 113 ~~~--------------------------~~~~~~fD~ii~~~~l--~~~~~~~~~~~l~~~~~~L---k~gG~l~i~~~ 161 (231)
+.. +...++||+|+++=-. ..-..++...+++.+.+.| .|||.+++.+.
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 531 1122389999996322 1111234555666555554 47999988643
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0081 Score=44.23 Aligned_cols=35 Identities=14% Similarity=-0.145 Sum_probs=26.9
Q ss_pred CCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.++||+|+.-. ......+..+.+.|+|||++++-+
T Consensus 120 ~~~fDlIfIDg-------~k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 120 FRHPDVVLVDG-------RFRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp CCCCSEEEECS-------SSHHHHHHHHHHHCSSCEEEEETT
T ss_pred CCCCCEEEEeC-------CCchhHHHHHHHhcCCCeEEEEeC
Confidence 37899999865 334567777889999999997754
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0023 Score=51.65 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------------- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------------- 115 (231)
.++++||=||.|.|..++.++.+.. ..+. .+|+.+..++.
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~---~~V~--~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKP---KMVT--MVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC---SEEE--EEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCC---ceeE--EEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh
Confidence 4568999999999999999985421 2232 23322221100
Q ss_pred CCCCCCeeEEEEeeeeecc---C--CC---CHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 NVNPSSVDVVTLIFMLSAV---S--PK---KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~---~--~~---~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.-..++||+||.-..-... | +. -.+.+++.+++.|+|||+++.-
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 0023579999985321110 0 00 1256789999999999999764
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00078 Score=51.62 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.++.+|||||||+|.++. +... ...+++++|+++.++
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~~-----~~~~v~avEid~~~~ 56 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVGE-----RLDQLTVIELDRDLA 56 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHHT-----TCSCEEEECCCHHHH
T ss_pred CCcCEEEEECCCCcHHHH-hhhC-----CCCeEEEEECCHHHH
Confidence 567899999999999998 5421 111256666665544
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.001 Score=52.33 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS 114 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~ 114 (231)
.++.+|||+|||+|.++..++.... ..+++++|.++.++.
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~----~~~VigvD~d~~al~ 64 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCP----GCRIIGIDVDSEVLR 64 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT----TCEEEEEESCHHHHH
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCC----CCEEEEEECCHHHHH
Confidence 5678999999999999999984321 346788998887764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0038 Score=50.27 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=54.9
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------------CCCC
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------------RNVN 118 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------------~~~~ 118 (231)
...++.+|||+++|+|.=+.+++.... .-.++..|++..-+. ....
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~----~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~ 220 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGC----CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE 220 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTC----EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC----CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc
Confidence 457889999999999999988874211 112334444321110 0123
Q ss_pred CCCeeEEEEeee--------eeccC-------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 119 PSSVDVVTLIFM--------LSAVS-------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 119 ~~~fD~ii~~~~--------l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
.+.||.|++-.- +..-+ ++ -...+|..+.+.|||||+++-++-+.
T Consensus 221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 568999997321 11000 00 11467888999999999998765444
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.026 Score=43.81 Aligned_cols=93 Identities=12% Similarity=0.003 Sum_probs=52.2
Q ss_pred CCCCCCCeEEEEcC------CCCcchHHHhcCccccccceeeeeecCCcccccC----------CCCCCCeeEEEEeee-
Q 045799 68 CPNGNPKVVLEVGC------GAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------NVNPSSVDVVTLIFM- 130 (231)
Q Consensus 68 ~~~~~~~~iLdvGc------G~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------~~~~~~fD~ii~~~~- 130 (231)
...+.+.+|||+|+ .+|.....-. .+.+..++.+|+.+..... ....++||+|++-..
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS~VLr~~-----~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGTAVLRQW-----LPTGTLLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHHHHHHHH-----SCTTCEEEEEESSCCBCSSSEEEESCGGGEEESSCEEEEEECCCC
T ss_pred EeecCCCEEEeCCCCCCCCCCCcHHHHHHh-----CCCCcEEEEeeCcccccCCCeEEEccccccccCCCCCEEEecCCC
Confidence 35688999999996 5665322111 1111233444444322111 012378999999432
Q ss_pred --eeccCCCC------HHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 131 --LSAVSPKK------MPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 131 --l~~~~~~~------~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
..+.+-+. .+.++.-+.+.|+|||.|++-.+....
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 12221111 456677788899999999997655443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.014 Score=46.50 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcC-c---------------------cc---------------------cccceeeeeecC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSH-S---------------------EF---------------------REERVNAFVCNV 108 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~-~---------------------~~---------------------~~~~~~~~~~D~ 108 (231)
+...|+.+|||.......+... . .. ...+...+.+|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 4578999999999888777610 0 00 123566778888
Q ss_pred Cccccc----CCC-CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCC---chhhh-hhhccccc-c
Q 045799 109 VNDDLS----RNV-NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIG---DFAQV-KLLDRNQM-I 178 (231)
Q Consensus 109 ~~~~~~----~~~-~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~---~~~~~-~~~~~~~~-~ 178 (231)
...... ... ..+...++++-.++.++++++..++++.+.+.+ |+|.+++.+...+ +.... .+...... .
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~r 255 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKESR 255 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhccc
Confidence 764321 111 235679999999999999889999999999887 7888877665444 11110 00000000 0
Q ss_pred ccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 179 GDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+..+ .+ ...+.+.++..+.|.++||+
T Consensus 256 g~~l----~~-~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 256 NLEM----PT-LMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp CCCC----TT-TTTTCSHHHHHGGGTTSSEE
T ss_pred CCcc----cc-cccCCCHHHHHHHHHHCCCC
Confidence 0000 00 01246889999999999997
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0075 Score=46.83 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+.++||+|+.-.-. . +.....+..+...|+|||++++-++
T Consensus 206 ~~~~~d~vfIDaD~--y--~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 206 PIDTLAVLRMDGDL--Y--ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCCCEEEEEECCCS--H--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCCCEEEEEEcCCc--c--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 34678888875421 1 2345789999999999999988764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.004 Score=51.02 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=18.2
Q ss_pred CCCeEEEEcCCCCcchHHHh
Q 045799 72 NPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~ 91 (231)
++.+|||+|||+|..+..++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA 112 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALM 112 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHH
Confidence 47899999999999998887
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.064 Score=41.92 Aligned_cols=97 Identities=14% Similarity=0.170 Sum_probs=53.7
Q ss_pred eeeeeecCCcccccCCCCCCCeeEEEEeeeeecc----C-C-------------CCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 101 VNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV----S-P-------------KKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 101 ~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~----~-~-------------~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+.+++.|..... ..+++++||+|++.=-.... . . ..+..+++++.++|+|||.+++....
T Consensus 22 ~~i~~gD~~~~l--~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 22 HRLHVGDAREVL--ASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp EEEEESCHHHHH--TTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CEEEECcHHHHH--hhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 456677765422 13457889999884322110 0 0 11346788999999999999875211
Q ss_pred CCchhhhhhhccccccccceEEeCCCeEEEeeC-HHHHHHHHHHcCceEEEEEEEe
Q 045799 163 IGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFS-EDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
.. . .. ...+.+ ..++ ...+..+++++||......++.
T Consensus 100 ~~-~------------~~----~~~g~~-~~~~~~~~l~~~~~~~Gf~~~~~iiW~ 137 (297)
T 2zig_A 100 VA-V------------AR----RRFGRH-LVFPLHADIQVRCRKLGFDNLNPIIWH 137 (297)
T ss_dssp EE-E------------EC----C----E-EEECHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred Cc-c------------cc----ccCCcc-cccccHHHHHHHHHHcCCeeeccEEEe
Confidence 00 0 00 000001 1122 3567888999999887765544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.052 Score=46.11 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=24.8
Q ss_pred chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHh
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+..+.+.+.+++. ..++.+|+|-+||+|.+.....
T Consensus 201 TP~~Vv~lmv~l~~------p~~~~~I~DPacGsGgfL~~a~ 236 (530)
T 3ufb_A 201 TPRPVVRFMVEVMD------PQLGESVLDPACGTGGFLVEAF 236 (530)
T ss_dssp CCHHHHHHHHHHHC------CCTTCCEEETTCTTTHHHHHHH
T ss_pred CcHHHHHHHHHhhc------cCCCCEEEeCCCCcchHHHHHH
Confidence 34445555544442 3567799999999999987664
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.016 Score=45.31 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.++..|||++||+|.++..++.. +.+++++|+++.++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~------g~~~~g~e~~~~~~ 270 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW------GRRALGVELVPRYA 270 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT------TCEEEEEESCHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHH
Confidence 57889999999999999887754 34778999886543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=94.02 E-value=0.018 Score=44.13 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=17.2
Q ss_pred CeEEEEcCCCCcchHHHh
Q 045799 74 KVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~ 91 (231)
.+|||+|||+|..+..++
T Consensus 90 ~~VLDl~~G~G~dal~lA 107 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLA 107 (258)
T ss_dssp CCEEETTCTTCHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHH
Confidence 899999999999999888
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.15 Score=40.08 Aligned_cols=134 Identities=10% Similarity=0.035 Sum_probs=78.5
Q ss_pred CeEEEEcCCCCcchHHHhcC------------------------ccccccceeeeeecCCcccccC-----CCCCCCeeE
Q 045799 74 KVVLEVGCGAGNTIFPLVSH------------------------SEFREERVNAFVCNVVNDDLSR-----NVNPSSVDV 124 (231)
Q Consensus 74 ~~iLdvGcG~G~~~~~l~~~------------------------~~~~~~~~~~~~~D~~~~~~~~-----~~~~~~fD~ 124 (231)
..|+++|||--.....+... ......+...+.+|+.. .+.. .+....--+
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~ 182 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTA 182 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCEE
Confidence 57999999976655444310 00123345667778765 3211 233345678
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccc-cceEEeC-----C-CeEEEeeC-H
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIG-DSFYVRG-----D-GTCSFYFS-E 196 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-~~~~~~~~-~ 196 (231)
+++-.+++|+++++...+++.+.+.+.||+.+++....... ...... ..... ..+...+ . .....+.+ .
T Consensus 183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~-~~~~~~--~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 259 (310)
T 2uyo_A 183 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHG-DEWREQ--MQLRFRRVSDALGFEQAVDVQELIYHDENR 259 (310)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTC-SHHHHH--HHHHHHHHHC-----------CCTTCCTTC
T ss_pred EEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCC-cchhHH--HHHHHHHHHHHcCCcCCCCccccccCCCCh
Confidence 88889999999888899999999999899888776544332 100000 00000 0110011 0 00011225 6
Q ss_pred HHHHHHHHHcCceEE
Q 045799 197 DFLSTLFLEAGFSTV 211 (231)
Q Consensus 197 ~~l~~~l~~~Gf~~~ 211 (231)
+++.+.|.+.||+.+
T Consensus 260 ~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 260 AVVADWLNRHGWRAT 274 (310)
T ss_dssp CCHHHHHTTTTEEEE
T ss_pred HHHHHHHHHCcCccc
Confidence 789999999999988
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.29 Score=38.71 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=55.2
Q ss_pred ccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc-----CC-------CCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 98 EERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV-----SP-------KKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 98 ~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~-----~~-------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
.....++..|.....- .+++++||+|++.=-.... .. .....++.+++++|+|||.+++..-....
T Consensus 12 ~~~~~ii~gD~~~~l~--~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~ 89 (323)
T 1boo_A 12 TSNGSMYIGDSLELLE--SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYM 89 (323)
T ss_dssp CSSEEEEESCHHHHGG--GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEE
T ss_pred cCCceEEeCcHHHHHh--hCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEec
Confidence 3445666777653221 3457789999884221100 00 13678899999999999999886211100
Q ss_pred hhhhhhhccccccccceEEeCCCe-EEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 166 FAQVKLLDRNQMIGDSFYVRGDGT-CSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
.+. ....+....+.++++.+||......++
T Consensus 90 ---------------------~g~~~~~~~~~~~i~~~~~~~Gf~~~~~iiW 120 (323)
T 1boo_A 90 ---------------------KGVPARSIYNFRVLIRMIDEVGFFLAEDFYW 120 (323)
T ss_dssp ---------------------TTEEEECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ---------------------CCCcccccchHHHHHHHHHhCCCEEEEEEEE
Confidence 000 001123445667788999988765554
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.32 Score=38.67 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=66.9
Q ss_pred cceeeeeecCCccc-cc-----CCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhh-
Q 045799 99 ERVNAFVCNVVNDD-LS-----RNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKL- 171 (231)
Q Consensus 99 ~~~~~~~~D~~~~~-~~-----~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~- 171 (231)
.+...+.+|+.... +. ..+..+.--++++-.++.|+++++..++++.+.+.. |+|.+++.+...++......
T Consensus 163 ~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M 241 (334)
T 3iei_A 163 KRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIM 241 (334)
T ss_dssp SSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHH
T ss_pred CceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHH
Confidence 34566777776421 11 124445678899999999999889999999999877 55666666655443322111
Q ss_pred hccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 172 LDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
.......+..+ .....|.+.++..+.|.++||+.+...
T Consensus 242 ~~~l~~~g~pl-----~sl~~y~t~~~~~~r~~~~Gw~~~~~~ 279 (334)
T 3iei_A 242 IENLRRRQCDL-----AGVETCKSLESQKERLLSNGWETASAV 279 (334)
T ss_dssp HHHHHTTTCCC-----TTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHHhCCCC-----cccccCCCHHHHHHHHHHcCCCcceee
Confidence 00000011000 000125688899999999999987643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.41 Score=41.86 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCeeEEEEeeeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHH
Q 045799 120 SSVDVVTLIFMLSAVS-PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDF 198 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
..||+|+.-..-.... .--...+++.++++++|||.+... -....
T Consensus 178 ~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~----------------------------------~~~~~ 223 (676)
T 3ps9_A 178 QKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF----------------------------------TSAGF 223 (676)
T ss_dssp TCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES----------------------------------CCCHH
T ss_pred CcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec----------------------------------cCcHH
Confidence 4677776644211111 111356788888888888876432 12247
Q ss_pred HHHHHHHcCceEEEEE
Q 045799 199 LSTLFLEAGFSTVDIN 214 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~ 214 (231)
+++.|.++||.+....
T Consensus 224 vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 224 VRRGLQDAGFTMQKRK 239 (676)
T ss_dssp HHHHHHHHTCEEEEEE
T ss_pred HHHHHHhCCeEEEecc
Confidence 8889999999988765
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.72 Score=40.39 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=39.6
Q ss_pred CCCeeEEEEeeeeecc-CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHH
Q 045799 119 PSSVDVVTLIFMLSAV-SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSED 197 (231)
Q Consensus 119 ~~~fD~ii~~~~l~~~-~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (231)
+..+|+++.-..-... |.--...++..+.+++++||.+... -...
T Consensus 169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~----------------------------------~~~~ 214 (689)
T 3pvc_A 169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF----------------------------------TAAG 214 (689)
T ss_dssp TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES----------------------------------CCCH
T ss_pred CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec----------------------------------cCcH
Confidence 3567777764421111 1112367788888888888876432 1235
Q ss_pred HHHHHHHHcCceEEEEEE
Q 045799 198 FLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~~~~ 215 (231)
.+++.|.++||.+.....
T Consensus 215 ~vr~~l~~aGf~~~~~~~ 232 (689)
T 3pvc_A 215 FVRRGLQQAGFNVTKVKG 232 (689)
T ss_dssp HHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHhCCeEEEeccC
Confidence 788999999999888653
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.075 Score=41.07 Aligned_cols=37 Identities=5% Similarity=0.008 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.++..+||++||.|..+..++.. +..++++|..+..+
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~------~g~VigiD~Dp~Ai 57 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAV 57 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHC------CCEEEEEeCCHHHH
Confidence 67889999999999999999865 33778999987775
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.26 Score=33.54 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEE
Q 045799 116 NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 116 ~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
.++.+.||.|+...--..-...-+..+++.+.+.|||||.|..
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 4678999999986633310013348899999999999999975
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=87.06 E-value=0.39 Score=38.43 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCcchHHHh
Q 045799 72 NPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~ 91 (231)
++..|||||.|.|.++..|+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll 77 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFY 77 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHH
Confidence 46889999999999999998
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=86.63 E-value=2.1 Score=33.07 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcC
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLK 151 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk 151 (231)
.+..|+=+|||.|.+...|+....--...++.+.+|..+.... . .+.-++.+.... ++ +.-+.+.++.+.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~--l-~~~~NV~li~~f---vd----e~dl~~l~~~~~ 129 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPI--L-NGLRDVTLVTRF---VD----EEYLRSIKKQLH 129 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGG--G-TTCTTEEEEECC---CC----HHHHHHHHHHHT
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhh--h-cCCCcEEEEecc---CC----HHHHHHHHHhcc
Confidence 3569999999999999988843222124678899999543321 1 112344333332 21 223566777777
Q ss_pred CCeEEEEEeccCC
Q 045799 152 PDGYILVCDYAIG 164 (231)
Q Consensus 152 ~gG~l~i~~~~~~ 164 (231)
...+++|+|....
T Consensus 130 ~~~iLLISDIRS~ 142 (307)
T 3mag_A 130 PSKIILISDVRSK 142 (307)
T ss_dssp TSCEEEEECCCC-
T ss_pred CCCEEEEEEecCC
Confidence 8899999987664
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.74 E-value=0.59 Score=35.59 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDD 112 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~ 112 (231)
.++..|||..||+|..+...+.. +-+++++|+.+..
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~------gr~~ig~e~~~~~ 246 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEY 246 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHH
Confidence 67889999999999998877654 3477888887543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.85 E-value=1 Score=36.01 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=45.2
Q ss_pred CCCCCeEEEEcCCC-CcchHHHhcCccccccceeeeeecCCccccc-------------------C---CCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGA-GNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------R---NVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~-G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------~---~~~~~~fD~ii 126 (231)
..++.+||-+|+|. |..+..++...... .++.+|.++...+ . ...++.+|+|+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~----~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vi 263 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGAS----IIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFAL 263 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCS----EEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC----eEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEE
Confidence 46789999999875 66666665321100 1233332221110 0 01123688887
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.... ....+..+.++|+++|.+++.-
T Consensus 264 d~~g--------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 264 ESTG--------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp ECSC--------CHHHHHHHHHTEEEEEEEEECC
T ss_pred ECCC--------CHHHHHHHHHHHhcCCEEEEeC
Confidence 6432 1346788899999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 231 | ||||
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 1e-17 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 5e-10 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-06 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 4e-06 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 4e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 4e-05 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 5e-05 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 6e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-04 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 4e-04 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 6e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 8e-04 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 0.002 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 0.002 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 0.003 |
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 1e-17
Identities = 29/255 (11%), Positives = 62/255 (24%), Gaps = 83/255 (32%)
Query: 24 LEEHYQS-KAKKYWDGFYKRHKNKFFKDRHYLE---KDWGNYFSDDSCCPNGNPKVVLEV 79
+ YQ + + Y Y + + F+ + + ++++
Sbjct: 6 VASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGE----VSGRTLIDI 61
Query: 80 GCGAGNTIFPLVS----------------------------HSEFREERVNAFVCNVVND 111
G G T++ L+S F + C +
Sbjct: 62 GSG--PTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 119
Query: 112 DLSRNVN----------------------------PSSVDVVTLIFMLSAVS--PKKMPL 141
P D + F L AVS
Sbjct: 120 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQR 179
Query: 142 ILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLST 201
L +I +L+P G++L+ + + SE+ +
Sbjct: 180 ALDHITTLLRPGGHLLLIGALEESW---------------YLAGEARLTVVPVSEEEVRE 224
Query: 202 LFLEAGFSTVDINIH 216
+ +G+ D+ +
Sbjct: 225 ALVRSGYKVRDLRTY 239
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (132), Expect = 5e-10
Identities = 25/251 (9%), Positives = 56/251 (22%), Gaps = 81/251 (32%)
Query: 26 EHYQSK--AKKYWDGFYKRHKNKFFKD--RHYLEKDWGNYFSDDSCCPNGNPKVVLEVGC 81
+ YQ + Y +Y + + + + F ++++G
Sbjct: 5 DEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGL----QGDTLIDIGS 60
Query: 82 GAGNTIFPLVSHS----------------------------EFREERVNAFVCN------ 107
G I+ +++ + F C
Sbjct: 61 GPT--IYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 118
Query: 108 --------------------VVNDDLSRNVNPSSVDVVTLIFMLSAVS--PKKMPLILQN 145
V + D V + + L N
Sbjct: 119 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCN 178
Query: 146 IKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205
+ ++LKP G+++ + S+ V + + L+
Sbjct: 179 LASLLKPGGHLVTTVT---------------LRLPSYMVGKREFSCVALEKGEVEQAVLD 223
Query: 206 AGFSTVDINIH 216
AGF +
Sbjct: 224 AGFDIEQLLHS 234
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.9 bits (105), Expect = 3e-06
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 41/182 (22%)
Query: 10 RHSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCP 69
+ + + P +++ +A + W + +++ + + +L +
Sbjct: 5 YRTRSLGVAAEGIP-DQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQH-------- 55
Query: 70 NGNPKVVLEVGCGAGNTIFPLVSH-------------------------SEFREERVNAF 104
VL+V CG G LV E ++
Sbjct: 56 --GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE 113
Query: 105 VCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPL-----ILQNIKAVLKPDGYILVC 159
N + D V+ L + + K L+NI ++++P G +++
Sbjct: 114 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173
Query: 160 DY 161
Sbjct: 174 HR 175
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 43.8 bits (102), Expect = 4e-06
Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 46 KFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPL-------------VS 92
+F +++ L + + + P L++GCG G L +
Sbjct: 7 NYFTEKYGLTRTHSDVLAA---AKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPA 63
Query: 93 HSEFREERVNAFVCNVVNDDLSRNVNPS---SVDVVTLIFMLSAVSPKKMPLILQNIKAV 149
E A + + DL + D + ++ + + +P ++ N++
Sbjct: 64 SMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRC 123
Query: 150 LKPDGYILVCDY 161
KP GY L+
Sbjct: 124 TKPGGYNLIVAA 135
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.2 bits (98), Expect = 1e-05
Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 27/156 (17%)
Query: 76 VLEVGCGAGNTIFPLVSH-----------------SEFREERVNAFVCNVVNDDLSRNVN 118
VL++G GAG+T + S F +E+ V S
Sbjct: 20 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79
Query: 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD-YAIGDFAQVKLLDRNQM 177
S D++T + + ++ + VLK DG L+ D YA D + ++
Sbjct: 80 DDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNR 137
Query: 178 IGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
+ D +VR S +F + DI
Sbjct: 138 LRDPSHVR-------ESSLSEWQAMFSANQLAYQDI 166
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 41.4 bits (96), Expect = 4e-05
Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 36/206 (17%)
Query: 40 YKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPL--------- 90
Y ++ + + Y+ F ++ P +++ GCG G L
Sbjct: 1 YLKNTRDLYYNDDYVS------FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSK 54
Query: 91 ----------VSHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMP 140
++ + + + D +N + F+L +P+ M
Sbjct: 55 YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETM- 113
Query: 141 LILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD---RNQMIGDSFYVRGDGTCSFYFSED 197
LQ + +K G I+ + LLD +++ I + + + +D
Sbjct: 114 --LQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKD 171
Query: 198 F-----LSTLFLEAGFSTVDINIHLK 218
+ E G ++ + K
Sbjct: 172 GNIGMKIPIYLSELGVKNIECRVSDK 197
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 24/149 (16%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAG- 84
E Y A+ Y+D Y+R + + ++E+ + + VL++ CG G
Sbjct: 3 ELYTLLAE-YYDTIYRRRIERVKAEIDFVEEIFKEDA-------KREVRRVLDLACGTGI 54
Query: 85 ---------------NTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129
+ ++ + + + N + + D L V
Sbjct: 55 PTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFS 114
Query: 130 MLSAVSPKKMPLILQNIKAVLKPDGYILV 158
+ + + + + LKP G +
Sbjct: 115 TIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.9 bits (94), Expect = 5e-05
Identities = 24/212 (11%), Positives = 63/212 (29%), Gaps = 22/212 (10%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEK---------DWGNYFSDDSCCPNGNPKVV 76
+ Y Y D + ++++ L K D S
Sbjct: 3 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-- 60
Query: 77 LEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSP 136
+ ++ + + + V +V D + + D V I + P
Sbjct: 61 ---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 117
Query: 137 KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSE 196
++ + + ++ VLKP G ++ + + + L + ++G +++ S +
Sbjct: 118 LELNQVFKEVRRVLKPSGKFIMYFTDLREL--LPRLKESLVVGQKYWI------SKVIPD 169
Query: 197 DFLSTLFLEAGFSTVDINIHLKQIKNRSQDIT 228
T+ +E + ++
Sbjct: 170 QEERTVVIEFKSEQDSFRVRFNVWGKTGVELL 201
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 40.7 bits (94), Expect = 6e-05
Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 35/207 (16%)
Query: 25 EEHYQSKAKKYWDGFYKRHKNKF--FKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCG 82
E+ + KA +YW H ++ + F + P L+ G G
Sbjct: 46 EKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNF--IASLPGHGTSRALDCGAG 103
Query: 83 AGNTIFPLVSH----------------SEFREERVNAFVCNVVNDDLSRNVNPSSVDVVT 126
G L++ RE ++ + + P++ D++
Sbjct: 104 IGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV 163
Query: 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRG 186
+ + ++ ++ + L P+GYI + +
Sbjct: 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG-------------DRFLVDKE 210
Query: 187 DGTCSFYFSEDFLSTLFLEAGFSTVDI 213
D S S+ LF E+G V
Sbjct: 211 DS--SLTRSDIHYKRLFNESGVRVVKE 235
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 19/169 (11%), Positives = 42/169 (24%), Gaps = 14/169 (8%)
Query: 69 PNGNPKVVLEVGCGAGNTIFPL-----------VSHSEFREERVNAFVCNVVNDDLSRNV 117
P P +LE+G G+ L S + +
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDA 76
Query: 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQM 177
++ + + L+ + L G + + ++ + +
Sbjct: 77 QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGII 136
Query: 178 IGDSFYVRGDGT--CSFYFSEDFLSTLFLEAGFSTVDIN-IHLKQIKNR 223
+S + ++ D L AG + I K + N
Sbjct: 137 SHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKALANF 185
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 18/155 (11%), Positives = 40/155 (25%), Gaps = 21/155 (13%)
Query: 74 KVVLEVGCGAGNTIFPLVSH---------------SEFREERVNAFVCNVVNDDLSRNVN 118
+ VL+V G G+ N + +
Sbjct: 17 EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMI 178
+ + ++A + VLK G +L+ D + + +
Sbjct: 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV------F 130
Query: 179 GDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
+ D + + + + EAGF ++
Sbjct: 131 YNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 165
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 38.2 bits (88), Expect = 4e-04
Identities = 44/218 (20%), Positives = 77/218 (35%), Gaps = 22/218 (10%)
Query: 11 HSLPAAIQPQNYPLEEHYQSKAKKYWDGFYKRHK-NKFFKDRHYLEKDWGNYFSDDSCCP 69
H L I ++ L + +WD K + N F D + N D
Sbjct: 20 HELKKWIYEEDLTLFGV--TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV 77
Query: 70 NGNPKVVLEVGCGAGNTI------FP-----LVSHSEFREERVNAFVCNVVNDDLSRNVN 118
+ +++VG G G T FP + + E + V D+ ++
Sbjct: 78 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP 137
Query: 119 PSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGY---ILVCDYAIGDFAQVKLLDRN 175
+ D V L ++L + K IL+ K + DG + + D I + +
Sbjct: 138 NA--DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQI 195
Query: 176 QMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
+++ D +G +E+ LF+EAGF I
Sbjct: 196 KLLMDVNMACLNG---KERNEEEWKKLFIEAGFQHYKI 230
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 37.1 bits (85), Expect = 6e-04
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 13/109 (11%)
Query: 74 KVVLEVGCGAG------NTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127
V ++VGCG G V + E ++ N+ L NV D
Sbjct: 35 DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94
Query: 128 IF-------MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQV 169
+ + S ++ IL+ IK LKP G I+V + +
Sbjct: 95 LCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEA 143
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 8e-04
Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 29/155 (18%)
Query: 76 VLEVGCGAGNTIFPLVSHSEFR------------------EERVNAFVCNVVNDDLSRNV 117
+L++G G+G + EE + + +++D + V
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQM 177
DV + + + LKP G +L+ + L +
Sbjct: 97 ANEKCDVAACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPYWRQ------LPATEE 148
Query: 178 IGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVD 212
I + V + + L F + G+ V+
Sbjct: 149 IAQACGVSSTS---DFLTLPGLVGAFDDLGYDVVE 180
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 36.5 bits (83), Expect = 0.002
Identities = 34/169 (20%), Positives = 52/169 (30%), Gaps = 31/169 (18%)
Query: 67 CCPNGNPKVVLEVGCGAGNTIFPLVSHSEF-------REERVNAFVCNVVNDDLSRNV-- 117
+ VL+VG G G + + + + L+ V
Sbjct: 76 AYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTV 135
Query: 118 --------NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDF--- 166
P + DVV L F+L S + IL+ L+P G +LV D A +
Sbjct: 136 AEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA 195
Query: 167 --AQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213
LLD + VR + D + L AG +
Sbjct: 196 DRFFSTLLDLRMLTFMGGRVR---------TRDEVVDLAGSAGLALASE 235
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 36.3 bits (82), Expect = 0.002
Identities = 27/192 (14%), Positives = 57/192 (29%), Gaps = 25/192 (13%)
Query: 26 EHYQSKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGN 85
++ +Y + ++ H+ + + ++ P G +E+G G G
Sbjct: 4 HIFERFVNEY-ERWFLVHRFAYLSELQAVKCLL----------PEGR---GVEIGVGTGR 49
Query: 86 TIFPLVSHSEF----REERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAVSPKKMPL 141
PL R + V + N+ + + +
Sbjct: 50 FAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 109
Query: 142 ILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLST 201
L+ +LK GY++V F + + + +FS + L
Sbjct: 110 ALKEAYRILKKGGYLIVGIVDRESFL-------GREYEKNKEKSVFYKNARFFSTEELMD 162
Query: 202 LFLEAGFSTVDI 213
L +AGF +
Sbjct: 163 LMRKAGFEEFKV 174
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (79), Expect = 0.003
Identities = 27/205 (13%), Positives = 50/205 (24%), Gaps = 25/205 (12%)
Query: 25 EEHYQSKAKKYWD-----------GFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNP 73
E+ + SKAK YW G+ R +L++ +
Sbjct: 8 EKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK------TGT 61
Query: 74 KVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSA 133
L+ G G G L+ + V+ +V V +
Sbjct: 62 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF 121
Query: 134 VSPKKMPLILQNIKAVLKPDGYIL-----VCDYAIGDFAQVKLLDRNQMIGDSFYVRGDG 188
++ + L C ++ + + D G
Sbjct: 122 TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD-- 179
Query: 189 TCSFYFSEDFLSTLFLEAGFSTVDI 213
S D + + AG S +
Sbjct: 180 -SSVCRDLDVVRRIICSAGLSLLAE 203
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 231 | |||
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.86 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.85 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.85 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.84 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.84 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.83 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.81 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.8 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.78 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.77 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.77 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.76 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.75 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.74 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.73 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.73 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.72 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.71 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.71 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.7 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.66 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.66 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.64 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.64 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.63 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.6 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.58 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.52 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.48 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.46 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.46 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.38 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.34 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.31 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.29 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.27 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.26 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.25 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.24 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.24 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.14 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.14 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.13 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.07 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.02 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.98 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.95 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.94 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.93 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.9 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.87 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.75 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.67 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.66 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.52 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.45 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.44 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.38 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.35 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.29 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.25 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.23 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.22 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.04 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.03 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.99 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.99 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.96 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.89 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.88 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.88 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.84 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.81 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.8 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.8 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.76 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.73 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.7 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.67 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.58 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.56 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.55 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.48 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.45 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.37 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.28 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.21 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.97 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.86 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.85 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.74 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.7 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.67 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.83 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.65 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.5 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.25 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 93.96 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.77 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.44 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.97 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.28 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 89.4 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.41 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.28 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 87.83 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 85.73 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 85.38 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 84.4 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 83.91 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 83.58 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 83.39 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 81.44 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 80.59 |
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.2e-21 Score=145.99 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=90.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------CCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------RNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------~~~~~~~fD~ii~~~~l~~~ 134 (231)
.+..+|||||||+|.++..+.. ++++|+++.++. .++++++||+|++.++|+|+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~~----------~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~ 104 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLKI----------KIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV 104 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHTC----------CEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred CCCCeEEEECCCCcccccccce----------EEEEeCChhhcccccccccccccccccccccccccccccccccccccc
Confidence 4456899999999999988852 234444443332 25678999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 214 (231)
+++..++++++++|+|||.+++.++.............. .... ...+..+++.+++.++|+++||+++++.
T Consensus 105 --~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 105 --DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNK--EKSV-----FYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp --SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTT--TC-C-----CSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred --cccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhcc--cccc-----ccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 789999999999999999999988766543321111000 0000 0111246899999999999999988765
Q ss_pred E
Q 045799 215 I 215 (231)
Q Consensus 215 ~ 215 (231)
.
T Consensus 176 ~ 176 (208)
T d1vlma_ 176 Q 176 (208)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.85 E-value=1e-21 Score=148.66 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=98.9
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
..++.+|||||||+|.++..++.. ..+++++|+++.++. .++++++||+|+
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~ 86 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVT 86 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHh------CCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccc
Confidence 377899999999999999888743 235677787765532 256789999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+.++++|+ +++..++++++++|||||++++.++..+......... ..... .....+...++.+++.++|+++
T Consensus 87 ~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~l~~a 158 (231)
T d1vl5a_ 87 CRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFY--NYVEK----ERDYSHHRAWKKSDWLKMLEEA 158 (231)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHH--HHHHH----HHCTTCCCCCBHHHHHHHHHHH
T ss_pred cccccccc--CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHH--HHHHh----hcccCcccCCCHHHHHHHHHHC
Confidence 99999999 7899999999999999999999887665432111100 00000 0011122457889999999999
Q ss_pred CceEEEEEEEeee
Q 045799 207 GFSTVDINIHLKQ 219 (231)
Q Consensus 207 Gf~~~~~~~~~~~ 219 (231)
||+++++......
T Consensus 159 Gf~~~~~~~~~~~ 171 (231)
T d1vl5a_ 159 GFELEELHCFHKT 171 (231)
T ss_dssp TCEEEEEEEEEEE
T ss_pred CCEEEEEEEeecC
Confidence 9999887765443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.5e-21 Score=147.03 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++.+|||||||+|.++..++... ..++.++|+++.++. .++++++||+|++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~ 133 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI 133 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhc-----CCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence 566899999999999998886332 124567777766542 1456789999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
.++++|+++++...++++++++|+|||.+++.+....+.. .+...+. ...++.+.+.++|+++|
T Consensus 134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~--------------~~~~~~~--~~~~~~~~~~~l~~~aG 197 (222)
T d2ex4a1 134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV--------------ILDDVDS--SVCRDLDVVRRIICSAG 197 (222)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE--------------EEETTTT--EEEEBHHHHHHHHHHTT
T ss_pred ccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc--------------ccccCCc--eeeCCHHHHHHHHHHcC
Confidence 9999999765667899999999999999999875443211 0111111 23468999999999999
Q ss_pred ceEEEEEE
Q 045799 208 FSTVDINI 215 (231)
Q Consensus 208 f~~~~~~~ 215 (231)
|++++.+.
T Consensus 198 f~ii~~~~ 205 (222)
T d2ex4a1 198 LSLLAEER 205 (222)
T ss_dssp CCEEEEEE
T ss_pred CEEEEEEE
Confidence 99998765
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1e-20 Score=145.78 Aligned_cols=172 Identities=16% Similarity=0.296 Sum_probs=118.2
Q ss_pred hHHHhh-HHHhhHHHHHHhccCCcccchh---hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccc
Q 045799 25 EEHYQS-KAKKYWDGFYKRHKNKFFKDRH---YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREER 100 (231)
Q Consensus 25 ~~~~~~-~~~~~w~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~ 100 (231)
.+.|.. ++..||+.+|......+..+.. +....+.+.+.. ....+.+|||||||+|..+...+... .
T Consensus 7 ~~~~~~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~----g~~~g~~vLDiGcG~g~~~~~~~~~~-----~ 77 (263)
T d2g72a1 7 ASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFAT----GEVSGRTLIDIGSGPTVYQLLSACSH-----F 77 (263)
T ss_dssp HHHGGGCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHT----SCSCCSEEEEETCTTCCGGGTTGGGG-----C
T ss_pred HHHHhhcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCC----CCCCCcEEEEeccCCCHHHHHHhccc-----C
Confidence 345544 5778999999877766665553 444555665532 24568899999999997764433111 1
Q ss_pred eeeeeecCCcccccC-----------------------------------------------------------CCCCCC
Q 045799 101 VNAFVCNVVNDDLSR-----------------------------------------------------------NVNPSS 121 (231)
Q Consensus 101 ~~~~~~D~~~~~~~~-----------------------------------------------------------~~~~~~ 121 (231)
-+++++|+++.++.. +.+.++
T Consensus 78 ~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 157 (263)
T d2g72a1 78 EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLP 157 (263)
T ss_dssp SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSS
T ss_pred CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCc
Confidence 145666666554321 123468
Q ss_pred eeEEEEeeeeeccCC--CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeE-EEeeCHHH
Q 045799 122 VDVVTLIFMLSAVSP--KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC-SFYFSEDF 198 (231)
Q Consensus 122 fD~ii~~~~l~~~~~--~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 198 (231)
||+|++.+++||+++ +++..++++++++|||||++++.+.... .++..+.... ..+++.++
T Consensus 158 fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~----------------~~~~~~~~~~~~~~~t~e~ 221 (263)
T d2g72a1 158 ADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE----------------SWYLAGEARLTVVPVSEEE 221 (263)
T ss_dssp EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC----------------CEEEETTEEEECCCCCHHH
T ss_pred cCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC----------------cccccCCcccccCCCCHHH
Confidence 999999999999963 3678999999999999999999764332 1222222222 23589999
Q ss_pred HHHHHHHcCceEEEEEEEeeeee
Q 045799 199 LSTLFLEAGFSTVDINIHLKQIK 221 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~~~~~~~~ 221 (231)
+.++|+++||++++++.......
T Consensus 222 v~~~l~~aGf~v~~~~~~~~~~~ 244 (263)
T d2g72a1 222 VREALVRSGYKVRDLRTYIMPAH 244 (263)
T ss_dssp HHHHHHHTTEEEEEEEEEECCGG
T ss_pred HHHHHHHCCCeEEEEEEeeccCc
Confidence 99999999999999887665444
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.5e-21 Score=148.78 Aligned_cols=163 Identities=12% Similarity=0.140 Sum_probs=115.8
Q ss_pred HHhhHHHHHHhccCCcccc--hhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCC
Q 045799 32 AKKYWDGFYKRHKNKFFKD--RHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVV 109 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~ 109 (231)
...||+.+|......+..+ ..|+...+.+.+.. ...++.+|||||||+|.++..++.. ...+++++|++
T Consensus 13 ~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~vLDlGcG~G~~~~~~~~~-----~~~~v~giD~S 83 (257)
T d2a14a1 13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGP----GGLQGDTLIDIGSGPTIYQVLAACD-----SFQDITLSDFT 83 (257)
T ss_dssp HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHST----TSCCEEEEEESSCTTCCGGGTTGGG-----TEEEEEEEESC
T ss_pred hHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcc----cCCCCCEEEEECCCCCHhHHHHhcc-----ccCcEEEecCC
Confidence 5689999987766554433 23455555555432 2356789999999999988655422 12257888888
Q ss_pred ccccc---------------------------------------------------------CCCCCCCeeEEEEeeeee
Q 045799 110 NDDLS---------------------------------------------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 110 ~~~~~---------------------------------------------------------~~~~~~~fD~ii~~~~l~ 132 (231)
+.++. .+++.++||+|++.+++|
T Consensus 84 ~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 163 (257)
T d2a14a1 84 DRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME 163 (257)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHH
Confidence 76653 134678999999999999
Q ss_pred ccCC--CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeE-EEeeCHHHHHHHHHHcCce
Q 045799 133 AVSP--KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTC-SFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 133 ~~~~--~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~Gf~ 209 (231)
|++. +++..+++++.++|||||++++.++..... +......+ ..+++.++++++|+++||+
T Consensus 164 ~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 227 (257)
T d2a14a1 164 CACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS----------------YMVGKREFSCVALEKGEVEQAVLDAGFD 227 (257)
T ss_dssp HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE----------------EEETTEEEECCCCCHHHHHHHHHHTTEE
T ss_pred HhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccc----------------ceeccccccccCCCHHHHHHHHHHCCCE
Confidence 9963 467789999999999999999987544321 11111111 2468999999999999999
Q ss_pred EEEEEEEeee
Q 045799 210 TVDINIHLKQ 219 (231)
Q Consensus 210 ~~~~~~~~~~ 219 (231)
+++++.....
T Consensus 228 v~~~~~~~~~ 237 (257)
T d2a14a1 228 IEQLLHSPQS 237 (257)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEeccc
Confidence 9998765543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=3.5e-21 Score=146.07 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=100.0
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
.+++.+|||||||+|.++..++... .+++++|+++.|+. .++++++||+|+
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~------~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 87 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYV------QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIIT 87 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhC------CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceee
Confidence 4789999999999999999998432 25677887766542 267889999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++|+ +++..++++++++|||||++++.++..+........ ...+.. .....+...++..+|..+++++
T Consensus 88 ~~~~l~~~--~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (234)
T d1xxla_ 88 CRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEF--VNHLNR----LRDPSHVRESSLSEWQAMFSAN 159 (234)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH--HHHHHH----HHCTTCCCCCBHHHHHHHHHHT
T ss_pred eeceeecc--cCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHH--HHHHHh----hCCCcccccCCHHHHHHHHHHC
Confidence 99999999 789999999999999999999988765543311100 000000 0011122346889999999999
Q ss_pred CceEEEEEEEeeee
Q 045799 207 GFSTVDINIHLKQI 220 (231)
Q Consensus 207 Gf~~~~~~~~~~~~ 220 (231)
||.+..+.......
T Consensus 160 gf~~~~~~~~~~~~ 173 (234)
T d1xxla_ 160 QLAYQDIQKWNLPI 173 (234)
T ss_dssp TEEEEEEEEEEEEE
T ss_pred CCceeEEEEeeCcc
Confidence 99998877655433
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.81 E-value=6.5e-21 Score=146.08 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=89.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc---------------------CCCCCCCeeEEEEe
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS---------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~---------------------~~~~~~~fD~ii~~ 128 (231)
..+..+|||+|||+|+.+..|+.... -.+.++|.++.+++ .++++++||+|++.
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~-----~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~ 165 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLY-----ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQ 165 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHC-----SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEecccCChhhHHHHhhcC-----ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEee
Confidence 45678999999999999988873210 02344444444332 24567899999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
.+++|+++++...+++++++.|+|||.+++.+........ .....++ ..+.+.+.+.++|+++||
T Consensus 166 ~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~-------------~~d~~d~--~~~rs~~~~~~l~~~aGf 230 (254)
T d1xtpa_ 166 WTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF-------------LVDKEDS--SLTRSDIHYKRLFNESGV 230 (254)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE-------------EEETTTT--EEEBCHHHHHHHHHHHTC
T ss_pred ccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc-------------eecccCC--ceeCCHHHHHHHHHHcCC
Confidence 9999997666789999999999999999998644332110 0111122 234689999999999999
Q ss_pred eEEEEEE
Q 045799 209 STVDINI 215 (231)
Q Consensus 209 ~~~~~~~ 215 (231)
++++...
T Consensus 231 ~ii~~~~ 237 (254)
T d1xtpa_ 231 RVVKEAF 237 (254)
T ss_dssp CEEEEEE
T ss_pred EEEEEEe
Confidence 9988654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.80 E-value=1.7e-19 Score=135.82 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
+++.+|||||||+|..+..++.... ..+.+++++|+++.|+.. +++.+.+|+|++.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~--~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~ 115 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN 115 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCC--CSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhc--CCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEe
Confidence 6788999999999999998884322 336688999999988742 4456789999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh------hhc--ccccccc-ceEEeCC--CeEEEeeCHH
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK------LLD--RNQMIGD-SFYVRGD--GTCSFYFSED 197 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~------~~~--~~~~~~~-~~~~~~~--~~~~~~~~~~ 197 (231)
.++||++++++..+++++++.|||||.+++.+...+...... +.. ....... ....... ......++.+
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 195 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE 195 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence 999999888999999999999999999999887655432110 000 0000000 0000000 0001236889
Q ss_pred HHHHHHHHcCceEEEEE
Q 045799 198 FLSTLFLEAGFSTVDIN 214 (231)
Q Consensus 198 ~l~~~l~~~Gf~~~~~~ 214 (231)
++.++|+++||+.+++.
T Consensus 196 ~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 196 THKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCceEEe
Confidence 99999999999988764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.78 E-value=2.3e-19 Score=139.67 Aligned_cols=132 Identities=19% Similarity=0.080 Sum_probs=95.1
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~i 125 (231)
.+++.+|||||||+|.++..|+... +.+++++|+++.++. .++++++||+|
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V 139 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI 139 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccC-----CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchh
Confidence 4788999999999999998887321 235567777765532 26678999999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
++..+++|+ +++..++++++++|||||++++.++...+........ .+...+. ...+.+..++.+++++
T Consensus 140 ~~~~~l~h~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~s~~~~~~~l~~ 208 (282)
T d2o57a1 140 WSQDAFLHS--PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQ---PILDRIK------LHDMGSLGLYRSLAKE 208 (282)
T ss_dssp EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGH---HHHHHHT------CSSCCCHHHHHHHHHH
T ss_pred hccchhhhc--cCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHH---HHHHHhc------cCCCCCHHHHHHHHHH
Confidence 999999999 7899999999999999999999876554322111000 0000000 0123578899999999
Q ss_pred cCceEEEEEEEe
Q 045799 206 AGFSTVDINIHL 217 (231)
Q Consensus 206 ~Gf~~~~~~~~~ 217 (231)
+||+.+.+...+
T Consensus 209 ~Gf~~i~~~d~~ 220 (282)
T d2o57a1 209 CGLVTLRTFSRP 220 (282)
T ss_dssp TTEEEEEEEECH
T ss_pred cCCceEEEEECc
Confidence 999988876543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.9e-19 Score=137.58 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=106.7
Q ss_pred hhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcC--ccccccceeeeeecCCcccccC--------------
Q 045799 52 HYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSH--SEFREERVNAFVCNVVNDDLSR-------------- 115 (231)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~--~~~~~~~~~~~~~D~~~~~~~~-------------- 115 (231)
.|+.+.++.++..+. ..++..+|||||||+|.++..++.. ..+....+.++++|++..++..
T Consensus 22 ~~~~~~l~~~l~~l~--~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~ 99 (280)
T d1jqea_ 22 EFMDKKLPGIIGRIG--DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENV 99 (280)
T ss_dssp HHHHHTHHHHTTTTT--TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTE
T ss_pred HHHHHHHHHHHHHhc--cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccc
Confidence 366777777665441 2345568999999999998888732 2333445677888988766421
Q ss_pred ------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccc
Q 045799 116 ------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQM 177 (231)
Q Consensus 116 ------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~ 177 (231)
+.++++||+|++.++++|+ +++..++++++++|+|||.+++..+.........+......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~--~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~ 177 (280)
T d1jqea_ 100 KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSR 177 (280)
T ss_dssp EEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGG
T ss_pred cccchhhhhhhhcchhcccCCCCceeEEEEccceecC--CCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHh
Confidence 3457899999999999999 78999999999999999999988765543221111100111
Q ss_pred cccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 178 IGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
. ..+.+..+++.+++.++|++.||..+......
T Consensus 178 ~-------~~~~~~~~~~~~~~~~~L~~~G~~~~~~~~~~ 210 (280)
T d1jqea_ 178 F-------PQDDLCQYITSDDLTQMLDNLGLKYECYDLLS 210 (280)
T ss_dssp S-------CCCTTSCCCCHHHHHHHHHHHTCCEEEEEECC
T ss_pred c-------CCCcccccCCHHHHHHHHHHCCCceEEEeccc
Confidence 1 11111245788999999999999876655443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.77 E-value=3.9e-19 Score=133.81 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------CCCCCCeeEEEEeeeeec
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------NVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------~~~~~~fD~ii~~~~l~~ 133 (231)
.+.+|||||||+|.++..++.. +.+++++|+++.++.. ...+++||+|++..+|+|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~------g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEH 93 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHc------CCeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEe
Confidence 3568999999999999988743 2356777777655421 124579999999999999
Q ss_pred cCCCCHHHHHHHHH-HhcCCCeEEEEEeccCCchhhhhhhccccccccce-EE--eCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 134 VSPKKMPLILQNIK-AVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSF-YV--RGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 134 ~~~~~~~~~l~~~~-~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+ +++..++++++ ++|+|||.+++..++............+ ...... .. .....+.+.|+.+++.++++++||+
T Consensus 94 ~--~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~ 170 (225)
T d2p7ia1 94 I--DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMG-IISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ 170 (225)
T ss_dssp C--SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTT-SSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred c--CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhh-hhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCE
Confidence 9 88999999998 7899999999987655433211000000 000000 00 0001123468999999999999999
Q ss_pred EEEEEEE
Q 045799 210 TVDINIH 216 (231)
Q Consensus 210 ~~~~~~~ 216 (231)
+++....
T Consensus 171 i~~~~~~ 177 (225)
T d2p7ia1 171 VTYRSGI 177 (225)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9887643
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=4.5e-19 Score=135.53 Aligned_cols=115 Identities=17% Similarity=0.333 Sum_probs=82.9
Q ss_pred HHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcc
Q 045799 32 AKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVND 111 (231)
Q Consensus 32 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~ 111 (231)
-+++|+..|.+....+.....++...+.... ..+..+|||||||+|..+..|+.. +.+++++|+++.
T Consensus 8 ~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~iLDiGcGtG~~~~~l~~~------~~~v~gvD~s~~ 74 (251)
T d1wzna1 8 LAEYYDTIYRRRIERVKAEIDFVEEIFKEDA-------KREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEE 74 (251)
T ss_dssp TGGGHHHHTHHHHHTHHHHHHHHHHHHHHTC-------SSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHH
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-------CCCCCEEEEeCCCCCccchhhccc------ceEEEEEeeccc
Confidence 3567777765554333333334444443333 356779999999999999988754 346788898887
Q ss_pred cccC----------------------CCCCCCeeEEEEe-eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 112 DLSR----------------------NVNPSSVDVVTLI-FMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 112 ~~~~----------------------~~~~~~fD~ii~~-~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+.. +++ ++||+|++. .+++|++.+++..+|++++++|||||++++..
T Consensus 75 mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 75 MLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7642 333 689999996 57888866678899999999999999998854
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.5e-18 Score=130.86 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=109.5
Q ss_pred HhhHHHHHHhccCCccc-chh-hhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCc
Q 045799 33 KKYWDGFYKRHKNKFFK-DRH-YLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVN 110 (231)
Q Consensus 33 ~~~w~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~ 110 (231)
.++|+..|......+.. ... ++.+.+..++. ..++.+|||+|||+|..+..|+.. +.+++++|+|+
T Consensus 10 ~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~------~~~~~rvLd~GCG~G~~a~~LA~~------G~~V~gvD~S~ 77 (229)
T d2bzga1 10 LEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLK------GKSGLRVFFPLCGKAVEMKWFADR------GHSVVGVEISE 77 (229)
T ss_dssp HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHT------TCCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCH
T ss_pred HHHHHHHHccCCCCCccCCCCHHHHHHHHHhcC------CCCCCEEEEeCCCCcHHHHHHHhC------CCcEEEEeCCH
Confidence 47899988776544322 122 34444444442 367889999999999999999855 56788999887
Q ss_pred ccccC-----------------------------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHh
Q 045799 111 DDLSR-----------------------------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAV 149 (231)
Q Consensus 111 ~~~~~-----------------------------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~ 149 (231)
.++.. +...+.||+|+...+++|+++++...+++++.++
T Consensus 78 ~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~ 157 (229)
T d2bzga1 78 LGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSL 157 (229)
T ss_dssp HHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhh
Confidence 66521 2346789999999999999988999999999999
Q ss_pred cCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 150 LKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 150 Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
|||||.+++..+....... ...+++++.+++.+++.. +|++..++..
T Consensus 158 LkpgG~~~l~~~~~~~~~~-------------------~gpp~~~~~~el~~lf~~-~~~i~~le~~ 204 (229)
T d2bzga1 158 LGKKFQYLLCVLSYDPTKH-------------------PGPPFYVPHAEIERLFGK-ICNIRCLEKV 204 (229)
T ss_dssp EEEEEEEEEEEEECCTTTC-------------------CCSSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred cCCcceEEEEEcccCCCCC-------------------CCCCCCCCHHHHHHHhcC-CCEEEEEEEe
Confidence 9999998887655432110 001234788999999964 7887766543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=6.9e-19 Score=132.23 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
++..+|||||||+|.++..++.. +.+++++|++..++. .++++++||+|++.
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~------~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~ 109 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFI 109 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhh------hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEe
Confidence 56789999999999999988743 346788888877763 15678999999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
++++|++..++..+++++.++|||||++++....
T Consensus 110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999997668889999999999999999887654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.73 E-value=6.2e-18 Score=128.82 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=66.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------CC-CCCCeeEEEEe-
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------NV-NPSSVDVVTLI- 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~~-~~~~fD~ii~~- 128 (231)
.++++|||||||+|.++..++.. +.+++++|+++.|+.. .+ .+++||+|+|.
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~------g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~ 109 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCL 109 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECT
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh------CCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceee
Confidence 55689999999999999999844 3467888888877531 11 35789999986
Q ss_pred eeeeccC-CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVS-PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++++|+. ++++.+++++++++|+|||.+++..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 5778874 4578889999999999999998753
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=3.5e-18 Score=129.94 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------CCCCCCeeEEEEe-eeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------NVNPSSVDVVTLI-FMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------~~~~~~fD~ii~~-~~l~ 132 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++.. ++++++||+|++. .++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~ 114 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLS 114 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCCCEEEEECCCCchhccccccc------ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhh
Confidence 56789999999999999999754 3477888988877642 5778999999985 5899
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|+ +++..+++++.++|||||++++..++
T Consensus 115 ~~--~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 115 YV--ENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HC--SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hh--hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 99 78999999999999999999987644
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.9e-18 Score=130.63 Aligned_cols=131 Identities=14% Similarity=0.172 Sum_probs=93.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii 126 (231)
..++.+|||||||+|..+..++... ++.++++|+++.++.. .+++++||+|+
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~-----~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~ 105 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDH-----GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAA 105 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHT-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhc-----CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEE
Confidence 3778999999999999998887321 3456777877665421 24678999999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
+..+++|+ .++..++++++++|||||++++.+.............. ... ......+.+...+...++++
T Consensus 106 ~~~~~~~~--~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~a 174 (245)
T d1nkva_ 106 CVGATWIA--GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ--ACG-------VSSTSDFLTLPGLVGAFDDL 174 (245)
T ss_dssp EESCGGGT--SSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH--TTT-------CSCGGGSCCHHHHHHHHHTT
T ss_pred EEehhhcc--CCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHH--Hhc-------cCCCcccCCHHHHHHHHHHc
Confidence 99999999 78999999999999999999998754332211000000 000 00011246788999999999
Q ss_pred CceEEEEEEE
Q 045799 207 GFSTVDINIH 216 (231)
Q Consensus 207 Gf~~~~~~~~ 216 (231)
||+++.....
T Consensus 175 G~~~v~~~~~ 184 (245)
T d1nkva_ 175 GYDVVEMVLA 184 (245)
T ss_dssp TBCCCEEEEC
T ss_pred CCEEEEEEeC
Confidence 9998876544
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.71 E-value=4.1e-18 Score=130.34 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=91.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
....+|||||||+|.++..++.... .+.++++|+. .++.. .....+||+|++.
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p----~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~ 153 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAP----HVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILS 153 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcc----eeEEEEccCH-HHHHHHHHHHHHhhcccchhhccccchhhcccchhheeec
Confidence 5568999999999999999983221 2344445542 22110 1123579999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGF 208 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 208 (231)
+++||+++++...+|+++++.|||||.++|.+............ ............. ...++.++|.++|+++||
T Consensus 154 ~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~--~~~~dl~~~~~~~---g~~rt~~e~~~ll~~AGf 228 (253)
T d1tw3a2 154 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQ--FTELDLRMLVFLG---GALRTREKWDGLAASAGL 228 (253)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHH--HHHHHHHHHHHHS---CCCCBHHHHHHHHHHTTE
T ss_pred cccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhH--HHHhhHHHHhhCC---CcCCCHHHHHHHHHHCCC
Confidence 99999976677789999999999999999988655432211000 0000000000000 112588999999999999
Q ss_pred eEEEEEEEeeeee
Q 045799 209 STVDINIHLKQIK 221 (231)
Q Consensus 209 ~~~~~~~~~~~~~ 221 (231)
+++++...+....
T Consensus 229 ~~~~v~~~~~p~~ 241 (253)
T d1tw3a2 229 VVEEVRQLPSPTI 241 (253)
T ss_dssp EEEEEEEEECSSS
T ss_pred eEEEEEECCCCCC
Confidence 9999887665443
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=1.5e-17 Score=128.96 Aligned_cols=139 Identities=15% Similarity=0.189 Sum_probs=98.0
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTL 127 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~ 127 (231)
...++.+|||||||.|.++..++... +++++++++++.+... ++.+++||.|++
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~-----g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~s 132 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEY-----DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVS 132 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEE
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhc-----CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEee
Confidence 46889999999999999999887332 4567788887765321 346789999999
Q ss_pred eeeeeccCC-------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-cc--------cccccceEEeCCCeEE
Q 045799 128 IFMLSAVSP-------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-RN--------QMIGDSFYVRGDGTCS 191 (231)
Q Consensus 128 ~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~ 191 (231)
..+++|+++ +....+++++.++|||||++++.++...+........ .. .-+....+ .+ .
T Consensus 133 ie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiF---pg--g 207 (291)
T d1kpia_ 133 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF---PG--G 207 (291)
T ss_dssp ESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC---TT--C
T ss_pred chhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhc---CC--C
Confidence 999999964 3468999999999999999999887765432210000 00 00000000 00 1
Q ss_pred EeeCHHHHHHHHHHcCceEEEEEEEe
Q 045799 192 FYFSEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 192 ~~~~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
.+.+..++...++++||+++++...+
T Consensus 208 ~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCHHHHHhhhcccccccceeeecc
Confidence 24578899999999999999886654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=1.2e-17 Score=123.23 Aligned_cols=119 Identities=18% Similarity=0.340 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~~ 129 (231)
++++|||||||+|.++..|+.. +.+++++|+++.+++. ...+++||+|++..
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~------g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~ 103 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTV 103 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEES
T ss_pred CCCcEEEECCCCCHHHHHHHHH------hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEee
Confidence 4469999999999999999854 4567788888766531 12468999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
+++|+++++..+++++++++|+|||++++.++........ ... ..+.++..++.+.+ .||+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-------~~~----------~~~~~~~~el~~~~--~~~~ 164 (198)
T d2i6ga1 104 VMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPC-------TVG----------FPFAFKEGELRRYY--EGWD 164 (198)
T ss_dssp CGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC--------------------------CCCCBCTTHHHHHT--TTSE
T ss_pred eeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCC-------CCC----------CCCccCHHHHHHHh--CCCe
Confidence 9999988888999999999999999999976544321110 000 01235666788777 5788
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
++....
T Consensus 165 i~~~~e 170 (198)
T d2i6ga1 165 MLKYNE 170 (198)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 876543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=7.8e-18 Score=130.17 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=95.8
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTL 127 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~ 127 (231)
...++.+|||||||+|.++..++... +++++++|++..+... ...+++||.|++
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~-----g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~s 123 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVS 123 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhC-----ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhH
Confidence 45789999999999999998876321 3467778877666421 124579999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhh-------------hccccccccceEEeCCCeEEEee
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKL-------------LDRNQMIGDSFYVRGDGTCSFYF 194 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 194 (231)
..+++|++.++...++++++++|||||.+++.+....+...... ......+... ..+.
T Consensus 124 i~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPg---------g~lP 194 (280)
T d2fk8a1 124 IEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPG---------GRLP 194 (280)
T ss_dssp ESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTT---------CCCC
T ss_pred hhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCC---------Cccc
Confidence 99999998777899999999999999999997654432211000 0000011111 1235
Q ss_pred CHHHHHHHHHHcCceEEEEEEEe
Q 045799 195 SEDFLSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 195 ~~~~l~~~l~~~Gf~~~~~~~~~ 217 (231)
+..++.+.++++||++.+++..+
T Consensus 195 S~~~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 195 STEMMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp CHHHHHHHHHHTTCBCCCCEECH
T ss_pred chHhhhhhHHhhccccceeeecc
Confidence 88999999999999999877643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=1.6e-16 Score=122.77 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=96.2
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTL 127 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~ 127 (231)
...++.+|||||||.|.++..++... +++++++++++.+.+. ...+++||.|++
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~-----g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~s 133 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKY-----DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVS 133 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEE
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcC-----CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceee
Confidence 46899999999999999999887331 4566777776554321 123579999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhh-------h--ccccccccceEEeCCCeEEEeeCHHH
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKL-------L--DRNQMIGDSFYVRGDGTCSFYFSEDF 198 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
..+++|+...+...++++++++|||||.+++.++.......... . ....-+....+ . + ....+..+
T Consensus 134 i~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiF--p-g--g~lPsl~~ 208 (285)
T d1kpga_ 134 IGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF--P-G--GRLPSIPM 208 (285)
T ss_dssp ESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS--T-T--CCCCCHHH
T ss_pred ehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhc--c-C--CCCCChhh
Confidence 99999998777899999999999999999987765432211000 0 00000000000 0 1 12357889
Q ss_pred HHHHHHHcCceEEEEEEEe
Q 045799 199 LSTLFLEAGFSTVDINIHL 217 (231)
Q Consensus 199 l~~~l~~~Gf~~~~~~~~~ 217 (231)
+..+++++||+++++...+
T Consensus 209 ~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 209 VQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHhchhhcccccch
Confidence 9999999999999987654
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.66 E-value=8.6e-17 Score=122.86 Aligned_cols=140 Identities=16% Similarity=0.263 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CC-CCCCeeEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NV-NPSSVDVV 125 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~-~~~~fD~i 125 (231)
+++.+|||||||+|..+..++... ..+++++|+++.++.. ++ .+++||+|
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~-----~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAG-----IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-----CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcC-----CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEE
Confidence 678999999999999998886321 1256788888776521 22 45689999
Q ss_pred EEeeeeeccC--CCCHHHHHHHHHHhcCCCeEEEEEeccCCchhh-hh------------hhcccc--ccccc---eEEe
Q 045799 126 TLIFMLSAVS--PKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQ-VK------------LLDRNQ--MIGDS---FYVR 185 (231)
Q Consensus 126 i~~~~l~~~~--~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~-~~------------~~~~~~--~~~~~---~~~~ 185 (231)
++.+++||+. .++...+++++.++|||||++++..+....... .. +..... ..... +...
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 177 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 177 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEcc
Confidence 9999999984 345678999999999999999886543221100 00 000000 00000 0110
Q ss_pred --CCCeEEEeeCHHHHHHHHHHcCceEEEEEE
Q 045799 186 --GDGTCSFYFSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 186 --~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
......+..+.+.+.++++++||++++...
T Consensus 178 ~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~ 209 (252)
T d1ri5a_ 178 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKG 209 (252)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred cccccCcccccCHHHHHHHHHHcCCEEEEEec
Confidence 012233566789999999999999988654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.64 E-value=7.9e-17 Score=123.19 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
....+|||||||+|..+..++... + .++++++|+. .++. .+. +..||+|++
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~--P--~~~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-p~~~D~v~~ 153 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRA--P--HLRGTLVELA-GPAERARRRFADAGLADRVTVAEGDFFKPL-PVTADVVLL 153 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHC--T--TCEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SCCEEEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhh--c--CcEEEEecCh-HHHHHHHHHHhhcCCcceeeeeeeeccccc-cccchhhhc
Confidence 456799999999999999998432 1 3445556642 2211 122 346999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh-hhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHc
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA-QVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEA 206 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 206 (231)
.++||++++++...+|+++++.|||||.++|.+....+.. ....... .....+..... ...++.++|.++++++
T Consensus 154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~--~~d~~ml~~~~---g~~rt~~e~~~ll~~A 228 (256)
T d1qzza2 154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFST--LLDLRMLTFMG---GRVRTRDEVVDLAGSA 228 (256)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHH--HHHHHHHHHHS---CCCCCHHHHHHHHHTT
T ss_pred cccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHH--HHHHHHHhhCC---CccCCHHHHHHHHHHC
Confidence 9999999776778899999999999999999886433211 1000000 00000000000 1125889999999999
Q ss_pred CceEEEEEEEeee
Q 045799 207 GFSTVDINIHLKQ 219 (231)
Q Consensus 207 Gf~~~~~~~~~~~ 219 (231)
||+++++...+..
T Consensus 229 Gf~~~~~~~~~~~ 241 (256)
T d1qzza2 229 GLALASERTSGST 241 (256)
T ss_dssp TEEEEEEEEECCS
T ss_pred CCceeEEEEeCCc
Confidence 9999998776543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.64 E-value=2.3e-17 Score=121.29 Aligned_cols=120 Identities=11% Similarity=0.083 Sum_probs=89.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------------
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------------- 115 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------------- 115 (231)
.+++.+|||+|||+|..+..|+.+ +.+++++|+++.++..
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 378899999999999999999854 5678899988777632
Q ss_pred --CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEe
Q 045799 116 --NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFY 193 (231)
Q Consensus 116 --~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
+....+||+|++..+++|+++++...+++++++.|||||.+++..+....... ... .+.
T Consensus 92 l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~---------~~p----------~~~ 152 (201)
T d1pjza_ 92 LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL---------EGP----------PFS 152 (201)
T ss_dssp STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS---------SSC----------CCC
T ss_pred cccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccC---------CCc----------ccc
Confidence 01135799999999999998777899999999999999999887544432210 000 123
Q ss_pred eCHHHHHHHHHHcCceEEEEEE
Q 045799 194 FSEDFLSTLFLEAGFSTVDINI 215 (231)
Q Consensus 194 ~~~~~l~~~l~~~Gf~~~~~~~ 215 (231)
.+.+++.+++. .+|++..++.
T Consensus 153 ~~~~el~~l~~-~~~~i~~~~~ 173 (201)
T d1pjza_ 153 VPQTWLHRVMS-GNWEVTKVGG 173 (201)
T ss_dssp CCHHHHHHTSC-SSEEEEEEEE
T ss_pred CCHHHHHHHhC-CCcEEEEEEE
Confidence 57788888774 6788766554
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=5.1e-16 Score=121.02 Aligned_cols=116 Identities=17% Similarity=0.292 Sum_probs=83.6
Q ss_pred hHHHhhHHHHHHhccCCcccchhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCC
Q 045799 30 SKAKKYWDGFYKRHKNKFFKDRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVV 109 (231)
Q Consensus 30 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~ 109 (231)
..++.+|+.+......+......|+... +. ..++.+|||+|||+|..+..|+.. +.+++++|++
T Consensus 24 ~~~~~~~~~~~~~~~~r~~~~~~~l~~~----l~------~~~~~~vLD~GcG~G~~~~~la~~------g~~v~gvD~S 87 (292)
T d1xvaa_ 24 GEAARVWQLYIGDTRSRTAEYKAWLLGL----LR------QHGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDAS 87 (292)
T ss_dssp SHHHHHHHHHHHTTCCBCHHHHHHHHHH----HH------HTTCCEEEESSCTTSHHHHHHHHT------TCEEEEEESC
T ss_pred chHHHHHHHHhcchhhhHHHHHHHHHHH----hh------hcCCCEEEEecCCCcHHHHHHHHc------CCeeeeccCc
Confidence 3567899988766554433223344333 22 144679999999999999999854 4578999999
Q ss_pred cccccC------------------------------CCCCCCeeEEEEee-eeeccCC-----CCHHHHHHHHHHhcCCC
Q 045799 110 NDDLSR------------------------------NVNPSSVDVVTLIF-MLSAVSP-----KKMPLILQNIKAVLKPD 153 (231)
Q Consensus 110 ~~~~~~------------------------------~~~~~~fD~ii~~~-~l~~~~~-----~~~~~~l~~~~~~Lk~g 153 (231)
+.|+.. ....++||+|++.+ +++|++. ++...++++++++||||
T Consensus 88 ~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 167 (292)
T d1xvaa_ 88 DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 167 (292)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred hHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence 877531 01357899999864 7999853 24678999999999999
Q ss_pred eEEEEEec
Q 045799 154 GYILVCDY 161 (231)
Q Consensus 154 G~l~i~~~ 161 (231)
|++++...
T Consensus 168 G~li~~~~ 175 (292)
T d1xvaa_ 168 GLLVIDHR 175 (292)
T ss_dssp EEEEEEEE
T ss_pred cEEEEeec
Confidence 99988643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.60 E-value=2e-16 Score=122.66 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||||||+|.++..++.... .+.+++++|+++.++.. ++ +++||+|++.
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~---~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~-~~~fD~v~~~ 101 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLP---EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICH 101 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSC---TTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCC---CCCEEEEEecchhHhhhhhcccccccccccccccccccccc-cCCceEEEEe
Confidence 5678999999999999988874321 12356777777654321 22 4689999999
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
++++|+ +++..+++++++.|||||.+++.+..
T Consensus 102 ~~l~~~--~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 102 AFLLHM--TTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp SCGGGC--SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhhcC--CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999 78999999999999999999988743
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=2.2e-15 Score=112.86 Aligned_cols=121 Identities=15% Similarity=0.077 Sum_probs=89.3
Q ss_pred CCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------CCCCCCeeEE
Q 045799 68 CPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------NVNPSSVDVV 125 (231)
Q Consensus 68 ~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~~~~~~fD~i 125 (231)
....++.+|||+|||+|..+.+++... . .-.++++|+++.++.. ...+..+|++
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~--~--~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIA--D--KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHT--T--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhC--C--CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeE
Confidence 356899999999999999999998432 2 2367889998877642 2355678888
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
++...+++. ++...++.++++.|||||.+++.+......... ......+++.+.|++
T Consensus 146 ~i~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~---------------------~~~~~~~e~~~~L~~ 202 (230)
T d1g8sa_ 146 VIYEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK---------------------DPKEIFKEQKEILEA 202 (230)
T ss_dssp EEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS---------------------CHHHHHHHHHHHHHH
T ss_pred Eeeccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCC---------------------CHHHHHHHHHHHHHH
Confidence 888888887 789999999999999999999876433221100 001134678899999
Q ss_pred cCceEEEEEE
Q 045799 206 AGFSTVDINI 215 (231)
Q Consensus 206 ~Gf~~~~~~~ 215 (231)
+||++++...
T Consensus 203 aGF~ive~id 212 (230)
T d1g8sa_ 203 GGFKIVDEVD 212 (230)
T ss_dssp HTEEEEEEEE
T ss_pred cCCEEEEEec
Confidence 9999988654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=1.7e-14 Score=109.39 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~~ 129 (231)
.++.+|||+|||+|.++..++.. +.+++++|+++.++.. .++.++||+|+++.
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~------g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani 192 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL 192 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC
T ss_pred CccCEEEEcccchhHHHHHHHhc------CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc
Confidence 67899999999999999877643 3467888988877642 34567999999875
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCce
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFS 209 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 209 (231)
..+. ...++..+.++|||||+++++.+.. ...+++.+.++++||+
T Consensus 193 ~~~~-----l~~l~~~~~~~LkpGG~lilSgil~------------------------------~~~~~v~~~~~~~Gf~ 237 (254)
T d2nxca1 193 YAEL-----HAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFR 237 (254)
T ss_dssp CHHH-----HHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCE
T ss_pred cccc-----HHHHHHHHHHhcCCCcEEEEEecch------------------------------hhHHHHHHHHHHCCCE
Confidence 4443 5678899999999999999864211 1346889999999999
Q ss_pred EEEEEE
Q 045799 210 TVDINI 215 (231)
Q Consensus 210 ~~~~~~ 215 (231)
+++...
T Consensus 238 ~~~~~~ 243 (254)
T d2nxca1 238 PLEEAA 243 (254)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.5e-15 Score=111.53 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ii 126 (231)
.++.+|||||||+|..+..++... ..+++++|+++.++.. ++++++||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~-----~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 126 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 126 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-----EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcC-----CCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccccccccee
Confidence 668899999999999999887432 2256788888766532 45778999998
Q ss_pred E-----eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHH
Q 045799 127 L-----IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLST 201 (231)
Q Consensus 127 ~-----~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (231)
. ...++|+ .+...++++++++|||||++++.+....... .. ..... ......+.+..
T Consensus 127 fD~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~---~~---~~~~~----------~~~~~~~~~~~ 188 (229)
T d1zx0a1 127 YDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL---MK---SKYSD----------ITIMFEETQVP 188 (229)
T ss_dssp ECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHH---TT---TTCSC----------HHHHHHHHTHH
T ss_pred ecccccccccccc--cCHHHHHHHHHHHcCCCcEEEEEecCCcchh---hh---hhhhh----------cchhhhhHHHH
Confidence 4 5556677 6788999999999999999987432211100 00 00000 00012345667
Q ss_pred HHHHcCceEEEEEEEeeee
Q 045799 202 LFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 202 ~l~~~Gf~~~~~~~~~~~~ 220 (231)
.+.++||++.+++.....+
T Consensus 189 ~l~~agF~~~~i~~~~~~~ 207 (229)
T d1zx0a1 189 ALLEAGFRRENIRTEVMAL 207 (229)
T ss_dssp HHHHTTCCGGGEEEEEEEC
T ss_pred HHHHCCCeeEEEEEEEecc
Confidence 7778999887776544443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=5.5e-14 Score=107.93 Aligned_cols=84 Identities=18% Similarity=0.398 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------CCCCCCCeeEEEEeeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------RNVNPSSVDVVTLIFMLS 132 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------~~~~~~~fD~ii~~~~l~ 132 (231)
.++.+|||||||+|.++..++.... +..++++|+++.++. .++++++||+|++.++++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~----~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 158 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALP----EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC 158 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT----TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC----CCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH
Confidence 5678999999999999999985432 346678888876653 267889999999988776
Q ss_pred ccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchh
Q 045799 133 AVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFA 167 (231)
Q Consensus 133 ~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~ 167 (231)
|+ +++.|+|||||.+++.+++...+.
T Consensus 159 ~~---------~e~~rvLkpgG~l~~~~p~~~~l~ 184 (268)
T d1p91a_ 159 KA---------EELARVVKPGGWVITATPGPRHLM 184 (268)
T ss_dssp CH---------HHHHHHEEEEEEEEEEEECTTTTH
T ss_pred HH---------HHHHHHhCCCcEEEEEeeCCcchH
Confidence 64 578999999999999987766544
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.46 E-value=2.6e-14 Score=107.93 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc----------------cccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS----------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~----------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
....+|||||||+|..+..++... .....+++++..|+.+ +++ ..|++++..++|++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~-----~~p--~~D~~~l~~vLh~~ 152 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFA-----SVP--QGDAMILKAVCHNW 152 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTT-----CCC--CEEEEEEESSGGGS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccc-----ccc--cceEEEEehhhhhC
Confidence 445799999999999999998221 1112344555555431 233 45999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhc-cccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLD-RNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
++++...+|+++++.|+|||.++|.+...++........ ....+.........+ .-+|.++|.++|+++||+.+++
T Consensus 153 ~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g---~ert~~e~~~ll~~AGF~~v~v 229 (244)
T d1fp1d2 153 SDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG---RERTEKQYEKLSKLSGFSKFQV 229 (244)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSC---CCEEHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCC---cCCCHHHHHHHHHHcCCCceEE
Confidence 888889999999999999999999987544321100000 000000000000011 1257899999999999999887
Q ss_pred EE
Q 045799 214 NI 215 (231)
Q Consensus 214 ~~ 215 (231)
..
T Consensus 230 ~~ 231 (244)
T d1fp1d2 230 AC 231 (244)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.38 E-value=4.9e-13 Score=100.84 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=88.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc----------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE----------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~----------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
....+|||||||+|..+..++.... -...+++++..|..+ +. ..+|++++.++||++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~-----~~--p~aD~~~l~~vLHdw 151 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFT-----SI--PNADAVLLKYILHNW 151 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTT-----CC--CCCSEEEEESCGGGS
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCccc-----CC--CCCcEEEEEeecccC
Confidence 3447899999999999999982211 112355555556542 22 257999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCC---eEEEEEeccCCchhhhhhhcccc-ccccceEEeCCCeEEEeeCHHHHHHHHHHcCceE
Q 045799 135 SPKKMPLILQNIKAVLKPD---GYILVCDYAIGDFAQVKLLDRNQ-MIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFST 210 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~g---G~l~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 210 (231)
++++...+|+++++.|+|| |+++|.+...++........... .....+. ...+ .-.+.++|.++|+++||++
T Consensus 152 ~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~-~~~G---~ert~~e~~~ll~~AGf~~ 227 (244)
T d1fp2a2 152 TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA-CLNG---KERNEEEWKKLFIEAGFQH 227 (244)
T ss_dssp CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGG-GGTC---CCEEHHHHHHHHHHTTCCE
T ss_pred ChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHH-hCCC---cCCCHHHHHHHHHHcCCce
Confidence 8888889999999999998 78888876544322110000000 0000000 0011 1258899999999999999
Q ss_pred EEEEEE
Q 045799 211 VDINIH 216 (231)
Q Consensus 211 ~~~~~~ 216 (231)
+++...
T Consensus 228 ~~i~~~ 233 (244)
T d1fp2a2 228 YKISPL 233 (244)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 987654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.34 E-value=8.8e-13 Score=97.16 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=62.2
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------CCCCCCeeEEE-
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVT- 126 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii- 126 (231)
...++.+|||+|||+|..+.+++.... ..+++++|+++.++.. ......+|.+.
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~----~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVD----EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTT----TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhcc----CCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE
Confidence 458899999999999999988874321 2267899998877642 11222333332
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+...+.|. .+...+++++++.|||||.+++.+.
T Consensus 129 v~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 129 IYQDIAQK--NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EEECCCST--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecccCh--hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 22345555 7788999999999999999998754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.31 E-value=4.4e-12 Score=91.84 Aligned_cols=80 Identities=25% Similarity=0.401 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~i 125 (231)
..++.+|||+|||+|.++..++... .+++++|+++.++.. ......||+|
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~------~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v 104 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRV------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIA 104 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEEECCeEcccccccccc------eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEE
Confidence 4788999999999999999887432 256677777665431 2345799999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
++.... .....+++.+.+.|||||.+++..
T Consensus 105 ~~~~~~-----~~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 105 VVGGSG-----GELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp EESCCT-----TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCcc-----ccchHHHHHHHHHhCcCCEEEEEe
Confidence 987654 345779999999999999998763
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.30 E-value=1.3e-12 Score=95.29 Aligned_cols=83 Identities=19% Similarity=0.278 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc------------------------CCCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS------------------------RNVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~------------------------~~~~~~~fD~i 125 (231)
..++.+|||+|||+|.++..++... .++.++|+++.++. ..+++++||+|
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~------~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~I 123 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEV------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKI 123 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGS------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhhc------cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEE
Confidence 3678999999999999998887321 13344555433321 13467899999
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++..++|+.. +....+++++.+.|+|||.+++.
T Consensus 124 i~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 124 ITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEE
Confidence 9988877652 23578899999999999999875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=2.6e-12 Score=94.12 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=59.2
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------CCCCCCCeeEEEE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------~~~~~~~fD~ii~ 127 (231)
.-.|||||||+|..+..++.... ...++++|++..++. ..++++++|.|++
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p----~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i 105 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNP----DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL 105 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCC----CCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccc
Confidence 45799999999999999983211 234455555444331 1367899999998
Q ss_pred eeeeeccCCCCH--------HHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IFMLSAVSPKKM--------PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~~~--------~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.+...+. ... ..+++.++++|||||.+++.+
T Consensus 106 ~fp~P~~--k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 106 NFSDPWP--KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp ESCCCCC--SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccccccc--hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8876665 222 479999999999999998863
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.27 E-value=7.3e-13 Score=96.50 Aligned_cols=89 Identities=16% Similarity=0.247 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCCCcchHHHh----cCccccccceeeeeecCCcccccC-------------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV----SHSEFREERVNAFVCNVVNDDLSR------------------------------- 115 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~----~~~~~~~~~~~~~~~D~~~~~~~~------------------------------- 115 (231)
.+..+|+++|||+|.-+..++ .........+++.+.|++...+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 456799999999999654444 111112235667788877655421
Q ss_pred ------------------------CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 ------------------------NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ------------------------~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+.+.++||+|+|.+||.|++++...++++++++.|+|||+|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 12347899999999999998777789999999999999999884
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.26 E-value=1.4e-12 Score=98.47 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc----------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeeeeecc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE----------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFMLSAV 134 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~----------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~l~~~ 134 (231)
....+|||||||+|.++..++.... ....++.++..|+.. +++ ..|++++..++|+.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~-----~~P--~ad~~~l~~vlh~~ 152 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFV-----SIP--KADAVFMKWICHDW 152 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTT-----CCC--CCSCEECSSSSTTS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccc-----cCC--CcceEEEEEEeecC
Confidence 3357899999999999999983211 011233333334321 233 35778889999999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccc-cccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 135 SPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRN-QMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 135 ~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
++++...+|+++++.|+|||.+++.+...++.......... ..+.-.......+. .-.+.++|.++|+++||+.+++
T Consensus 153 ~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g--~ert~~e~~~ll~~AGf~~vkv 230 (243)
T d1kyza2 153 SDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGG--KERTQKEFEDLAKGAGFQGFKV 230 (243)
T ss_dssp CHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSC--CCEEHHHHHHHHHHHCCSCEEE
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCC--CcCCHHHHHHHHHHcCCCcEEE
Confidence 88889999999999999999999987654322110000000 00000000000011 1257899999999999999987
Q ss_pred EE
Q 045799 214 NI 215 (231)
Q Consensus 214 ~~ 215 (231)
..
T Consensus 231 ~~ 232 (243)
T d1kyza2 231 HC 232 (243)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.25 E-value=4.9e-12 Score=95.22 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=56.4
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCc------------------------c-ccccceeeeeecCCcccccCCCCCCCee
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHS------------------------E-FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~------------------------~-~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
...++.+|||+|||+|.++..|+... . ....++++...|+. ..++++.||
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~-----~~~~~~~fD 156 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA-----DFISDQMYD 156 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT-----TCCCSCCEE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee-----cccccceee
Confidence 45889999999999999998887210 0 01123333333432 134678899
Q ss_pred EEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 124 VVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 124 ~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.|++ ++ .++..++..+++.|||||++++.
T Consensus 157 ~V~l-----d~--p~p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 157 AVIA-----DI--PDPWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEE-----CC--SCGGGSHHHHHHTEEEEEEEEEE
T ss_pred eeee-----cC--CchHHHHHHHHHhcCCCceEEEE
Confidence 9986 45 56778999999999999999875
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=8.2e-12 Score=95.07 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=74.8
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVV 125 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~i 125 (231)
+..++.+|||+|||+|.++..++... ....+++++|+++.++.. .+....||.|
T Consensus 100 ~i~pG~~VLDiG~GsG~lt~~lA~~~---~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V 176 (266)
T d1o54a_ 100 DVKEGDRIIDTGVGSGAMCAVLARAV---GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDAL 176 (266)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHT---TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEE
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeee
Confidence 45889999999999999999887321 112355666666555421 3445667776
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHH
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLE 205 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 205 (231)
+ .++ .++..++.++.++|||||.+++..++. -....+.+.+++
T Consensus 177 ~-----~d~--p~p~~~l~~~~~~LKpGG~lv~~~P~~------------------------------~Qv~~~~~~l~~ 219 (266)
T d1o54a_ 177 F-----LDV--PDPWNYIDKCWEALKGGGRFATVCPTT------------------------------NQVQETLKKLQE 219 (266)
T ss_dssp E-----ECC--SCGGGTHHHHHHHEEEEEEEEEEESSH------------------------------HHHHHHHHHHHH
T ss_pred E-----ecC--CCHHHHHHHHHhhcCCCCEEEEEeCcc------------------------------cHHHHHHHHHHH
Confidence 5 467 678899999999999999998763221 123467788888
Q ss_pred cCceEEEEE
Q 045799 206 AGFSTVDIN 214 (231)
Q Consensus 206 ~Gf~~~~~~ 214 (231)
.||..+++.
T Consensus 220 ~gF~~i~~~ 228 (266)
T d1o54a_ 220 LPFIRIEVW 228 (266)
T ss_dssp SSEEEEEEE
T ss_pred CCceeEEEE
Confidence 999776654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.24 E-value=1.7e-11 Score=91.04 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=62.9
Q ss_pred CCCCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCe
Q 045799 67 CCPNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSV 122 (231)
Q Consensus 67 ~~~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~f 122 (231)
.....++.+|||+|||+|.++.+++.... ..-.++++|+++.++.. +.....+
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG---~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVG---WEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHC---TTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccce
Confidence 34568999999999999999999983211 11245666666555421 2234677
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
|+|++ .+.|. ++...++.++.+.|||||.++++...
T Consensus 145 D~i~~--d~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 145 DVIFE--DVAQP--TQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEEE--CCCST--THHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEEE--Ecccc--chHHHHHHHHHHhcccCCeEEEEEEC
Confidence 87765 34454 67888999999999999999987543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=1.3e-11 Score=91.04 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVT 126 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii 126 (231)
..++.+|||||||+|..+..++.... ....++.+|.++.++. ....+++||+|+
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~---~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~ 149 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIF 149 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred ccccceEEEecCccchhHHHHHHHhC---CCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhh
Confidence 48899999999999999988862110 0112334444332221 123457899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+..+++++| ..+.+.|||||++++.
T Consensus 150 ~~~~~~~~p--------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 150 VTVGVDEVP--------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp ECSBBSCCC--------HHHHHHEEEEEEEEEE
T ss_pred hhccHHHhH--------HHHHHhcCCCcEEEEE
Confidence 999999884 2467889999999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.14 E-value=2.1e-11 Score=92.36 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCcc---------------------------ccccceeeeeecCCcccccCCCCCCC
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSE---------------------------FREERVNAFVCNVVNDDLSRNVNPSS 121 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~---------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~ 121 (231)
...++.+|||+|||+|.++..|+.... ....++.+...|+.. .++++++
T Consensus 93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~----~~~~~~~ 168 (264)
T d1i9ga_ 93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD----SELPDGS 168 (264)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG----CCCCTTC
T ss_pred CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc----ccccCCC
Confidence 458899999999999999999981100 001233333444432 2567899
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
||.|++ ++ .++..++..++++|||||.+++..
T Consensus 169 fDaV~l-----dl--p~P~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 169 VDRAVL-----DM--LAPWEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp EEEEEE-----ES--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred cceEEE-----ec--CCHHHHHHHHHhccCCCCEEEEEe
Confidence 999986 56 678899999999999999998764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.13 E-value=5.6e-11 Score=86.85 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=56.0
Q ss_pred CCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-------------------------cCCCCCCCeeEEEE
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-------------------------SRNVNPSSVDVVTL 127 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-------------------------~~~~~~~~fD~ii~ 127 (231)
...|||||||+|.++..+|.... ...++++|++..++ ...+++.++|.|++
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p----~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i 107 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNP----DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL 107 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCC----CCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc
Confidence 45799999999999999983211 22334444443322 12467889999987
Q ss_pred eeeeeccCCC------CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 128 IFMLSAVSPK------KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~------~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.+.-.+.... -...+++.++++|||||.+++.+
T Consensus 108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6644332100 12579999999999999998864
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=5.2e-11 Score=88.43 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------------CCCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------------RNVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------------~~~~~~~f 122 (231)
.++.+|||||||+|..+..++.... ....++++|..+.++. ...+.++|
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~---~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~f 151 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVG---CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY 151 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhC---CCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhh
Confidence 7889999999999998877762110 0113344444333221 12345789
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
|+|++..+++++| ..+.+.|||||++++.
T Consensus 152 D~I~~~~~~~~ip--------~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 152 DAIHVGAAAPVVP--------QALIDQLKPGGRLILP 180 (224)
T ss_dssp EEEEECSBBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred hhhhhhcchhhcC--------HHHHhhcCCCcEEEEE
Confidence 9999999998874 2467899999999885
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=2.4e-10 Score=89.32 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++++|||||||+|.++..++.... .+++++|.++.+.. .+++.++||+|++
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-----~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs 106 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGA-----RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS 106 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTC-----SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCC-----CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEee
Confidence 3578999999999998877763311 14566666543211 1446689999999
Q ss_pred eeeeeccC-CCCHHHHHHHHHHhcCCCeEEEE
Q 045799 128 IFMLSAVS-PKKMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 128 ~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~i 158 (231)
..+.+++. +..+..++..+.++|||||.++.
T Consensus 107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 77766664 45688999999999999999873
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=6.5e-10 Score=86.58 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=52.8
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCcc-----------------------------------ccccceeeeeecCCcccc
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSE-----------------------------------FREERVNAFVCNVVNDDL 113 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~-----------------------------------~~~~~~~~~~~D~~~~~~ 113 (231)
+..++.+|||+|||+|.++..|+.... ....++.+...|+.....
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~ 174 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 174 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence 358899999999999999999982100 001233444444432211
Q ss_pred cCCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 114 SRNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 114 ~~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.+++..||.|++ .+ .++..++.+++++|||||++++.
T Consensus 175 --~~~~~~fD~V~L-----D~--p~P~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 175 --DIKSLTFDAVAL-----DM--LNPHVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp --------EEEEEE-----CS--SSTTTTHHHHGGGEEEEEEEEEE
T ss_pred --ccCCCCcceEee-----cC--cCHHHHHHHHHHhccCCCEEEEE
Confidence 335678999876 45 45667899999999999999875
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.98 E-value=3.8e-10 Score=88.64 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~ii~ 127 (231)
.++++|||||||+|.++..++.... ..++++|.++... ..++++++||+|++
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga-----~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGA-----KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCC-----SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-----CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEE
Confidence 3578999999999999877763311 1445555553110 11456789999999
Q ss_pred eeeeeccC-CCCHHHHHHHHHHhcCCCeEEE
Q 045799 128 IFMLSAVS-PKKMPLILQNIKAVLKPDGYIL 157 (231)
Q Consensus 128 ~~~l~~~~-~~~~~~~l~~~~~~Lk~gG~l~ 157 (231)
..+.+++. ......++..+.++|||||.++
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 88777664 4677889999999999999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=4.8e-10 Score=85.27 Aligned_cols=108 Identities=16% Similarity=0.277 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc----------------------CCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS----------------------RNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~----------------------~~~~~~~fD~ii~~ 128 (231)
..+.+|||+|||+|..+..++.... ...++++|+++..+. .++++++||+|+++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p----~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN 182 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN 182 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred ccccceeeeehhhhHHHHHHHhhCC----cceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEec
Confidence 5567899999999999999883221 335566666554432 13456799999995
Q ss_pred ee-------------eeccCC----------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEe
Q 045799 129 FM-------------LSAVSP----------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVR 185 (231)
Q Consensus 129 ~~-------------l~~~~~----------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (231)
=- +.|-|. +....+++.+.+.|+|||.+++. .+.
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE-ig~---------------------- 239 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE-HGW---------------------- 239 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE-CCS----------------------
T ss_pred chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE-ECc----------------------
Confidence 21 111111 12356888999999999999884 111
Q ss_pred CCCeEEEeeCHHHHHHHHHHcCceEEEE
Q 045799 186 GDGTCSFYFSEDFLSTLFLEAGFSTVDI 213 (231)
Q Consensus 186 ~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 213 (231)
-..+.+.+++++.||..+++
T Consensus 240 --------~q~~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 240 --------QQGEAVRQAFILAGYHDVET 259 (274)
T ss_dssp --------SCHHHHHHHHHHTTCTTCCE
T ss_pred --------hHHHHHHHHHHHCCCCeEEE
Confidence 12467889999999976554
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.94 E-value=4.7e-10 Score=82.88 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCcc-------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEeee
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSE-------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIFM 130 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~-------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~~ 130 (231)
..++.+|||||||+|.++..|+.... ....++.+...|..... ...++||.|++...
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~----~~~~pfD~Iiv~~a 143 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY----EEEKPYDRVVVWAT 143 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC----GGGCCEEEEEESSB
T ss_pred hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcc----hhhhhHHHHHhhcc
Confidence 47899999999999999987762110 00124444555543221 13478999999998
Q ss_pred eeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 131 LSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 131 l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++++| ..+.+.|+|||++++.
T Consensus 144 ~~~ip--------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 144 APTLL--------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp BSSCC--------HHHHHTEEEEEEEEEE
T ss_pred hhhhh--------HHHHHhcCCCCEEEEE
Confidence 88874 2356889999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=6.1e-10 Score=86.79 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-----------------------CCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-----------------------RNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-----------------------~~~~~~~fD~ii~ 127 (231)
.++++|||||||+|.++..++.... .+++++|.++.+.. .+++.++||+|++
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga-----~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivs 108 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGA-----KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIIS 108 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTC-----SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEE
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCC-----CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEE
Confidence 4578999999999999887773311 14556666554321 1446689999999
Q ss_pred eeeeeccCCC-CHHHHHHHHHHhcCCCeEEEE
Q 045799 128 IFMLSAVSPK-KMPLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 128 ~~~l~~~~~~-~~~~~l~~~~~~Lk~gG~l~i 158 (231)
..+.+++..+ .+..++....+.|+|||+++.
T Consensus 109 e~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 109 EWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 8777766533 456777778899999999873
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=9.3e-11 Score=92.08 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=59.0
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------------C
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------------N 116 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------------~ 116 (231)
...++..|||||||+|.++..++.... ...++++|+++.++.. +
T Consensus 148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~----~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~ 223 (328)
T d1nw3a_ 148 KMTDDDLFVDLGSGVGQVVLQVAAATN----CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE 223 (328)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC----CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHHhC----CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc
Confidence 357889999999999999988873322 1145677777655321 0
Q ss_pred CCCCC--eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 117 VNPSS--VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 117 ~~~~~--fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+.+.. .|+|++. .+.|. +++...+.++.+.|||||.+++..
T Consensus 224 ~~~~~~~advi~~~-~~~f~--~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 224 WRERIANTSVIFVN-NFAFG--PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHHCSEEEEC-CTTTC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccccCcceEEEEc-ceecc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence 11112 3566654 45566 678899999999999999998865
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=2.7e-10 Score=91.08 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCC-C
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVN-P 119 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~-~ 119 (231)
...++.++||||||+|.++..++.... ...++|+|+++.++.. .+. .
T Consensus 213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g----~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~ 288 (406)
T d1u2za_ 213 QLKKGDTFMDLGSGVGNCVVQAALECG----CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN 288 (406)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred CCCCCCEEEeCCCCCcHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhc
Confidence 358899999999999999998874322 1156888888765431 000 0
Q ss_pred -------CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 120 -------SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 120 -------~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
..+|+|++.. +.|. +++...+.++.+.|||||.+++.+
T Consensus 289 ~~~d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 289 NRVAELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEec
Confidence 2356666544 4455 678999999999999999998865
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.75 E-value=3.7e-09 Score=78.03 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc--cccceeeeeecCCccccc----------------------------CCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF--REERVNAFVCNVVNDDLS----------------------------RNVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~--~~~~~~~~~~D~~~~~~~----------------------------~~~~~~ 120 (231)
.++.+|||||||+|..+..++..... .....+++.+|..+.... ...+.+
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~ 158 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA 158 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence 78899999999999998777621100 000112333333222110 022456
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+||.|++...+.++| ..+.+.|++||++++.
T Consensus 159 ~fD~Iiv~~a~~~~p--------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 159 PYNAIHVGAAAPDTP--------TELINQLASGGRLIVP 189 (223)
T ss_dssp SEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred ceeeEEEEeechhch--------HHHHHhcCCCcEEEEE
Confidence 899999999988774 1357899999999874
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.67 E-value=1.1e-08 Score=74.88 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCc----------------------cccccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHS----------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~----------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
..++.+|||||||+|..+..++... .....++.+...|..... ...++||.|++
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~----~~~~pfD~Iiv 151 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF----PPKAPYDVIIV 151 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC----GGGCCEEEEEE
T ss_pred cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC----cccCcceeEEe
Confidence 4788999999999999998776111 111134445555554322 24578999999
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
...+.++| . .+.+.|++||++++.
T Consensus 152 ~~a~~~ip----~----~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 152 TAGAPKIP----E----PLIEQLKIGGKLIIP 175 (215)
T ss_dssp CSBBSSCC----H----HHHHTEEEEEEEEEE
T ss_pred ecccccCC----H----HHHHhcCCCCEEEEE
Confidence 99888774 2 256789999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.66 E-value=1.1e-07 Score=71.64 Aligned_cols=110 Identities=9% Similarity=0.094 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------CCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------NVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------~~~~~~fD~ii~ 127 (231)
.++.+|||+|||+|.++..++... ..+++++|+++..+.. -...+.||.|++
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~-----~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~ 180 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYG-----KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM 180 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-----CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhC-----CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEE
Confidence 678999999999999999887321 1244555555443321 123467999987
Q ss_pred eeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhhhhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcC
Q 045799 128 IFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVKLLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAG 207 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 207 (231)
.. +.....++..+.+.|++||.+.+.++....... ....+.+.++....|
T Consensus 181 ~~------p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~------------------------~~~~e~~~~~~~~~g 230 (260)
T d2frna1 181 GY------VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYG 230 (260)
T ss_dssp CC------CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTT
T ss_pred CC------CCchHHHHHHHHhhcCCCCEEEEEeccccccch------------------------hhHHHHHHHHHHHcC
Confidence 42 234566888899999999999776433222110 013456778888899
Q ss_pred ceEEEEEE
Q 045799 208 FSTVDINI 215 (231)
Q Consensus 208 f~~~~~~~ 215 (231)
+++..+..
T Consensus 231 ~~v~~~~~ 238 (260)
T d2frna1 231 YDVEKLNE 238 (260)
T ss_dssp CEEEEEEE
T ss_pred CceEEEEE
Confidence 98865544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.52 E-value=1.4e-07 Score=73.16 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------------CCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------NVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~~~~~~fD 123 (231)
.++++|||++||+|.++.+++.. ..+++.+|.++.++.. ....++||
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc------CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCC
Confidence 45789999999999999887622 2245666666555421 12357899
Q ss_pred EEEEeeeeeccCC-------CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 124 VVTLIFMLSAVSP-------KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 124 ~ii~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|++.---..... .....++..+.++|+|||.++.+.
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s 261 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 261 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9998532111111 223467888999999999998864
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=3.3e-08 Score=71.05 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=66.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------------------CCCCCCe
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------NVNPSSV 122 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~~~~~~f 122 (231)
..++..+||++||+|..+..++... . ...++++|..+.++.. .+..++|
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~--~--~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~v 96 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHC--P--GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKV 96 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHC--T--TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcC--C--CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCc
Confidence 4778999999999999999998432 2 3467888887766531 2345789
Q ss_pred eEEEEeeeeec--cC-----CCCHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 123 DVVTLIFMLSA--VS-----PKKMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 123 D~ii~~~~l~~--~~-----~~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
|.|+.-..+.. ++ .......+..+.++|+|||.+++.++...+
T Consensus 97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~E 146 (192)
T d1m6ya2 97 DGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLE 146 (192)
T ss_dssp EEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHH
T ss_pred ceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHH
Confidence 99987654421 10 134568889999999999999988766543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.44 E-value=1.4e-07 Score=73.42 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
.++.+|||+|||+|.++..++... ..+++.+|+++..+.. ...+++|
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~g-----a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAG-----ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCCeeecccCcccchhhhhhhcC-----CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 678999999999999999887331 1145666666554321 1245789
Q ss_pred eEEEEeeeeeccCC-------CCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 123 DVVTLIFMLSAVSP-------KKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 123 D~ii~~~~l~~~~~-------~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
|+|++.-....-.. .....++..+.++|+|||.++.+..
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99998432111000 1245678888999999999988753
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.38 E-value=4.3e-07 Score=69.61 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------------CCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------------NVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------------~~~~~~ 121 (231)
.++.+|||+.||+|.++..++.. +.+++.+|.++..+.. ....++
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~ 204 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGST 204 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred cCCCeEEEecCCCcHHHHHHHhC------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCC
Confidence 45789999999999999988743 2356677776655421 112468
Q ss_pred eeEEEEe---eeee------ccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 122 VDVVTLI---FMLS------AVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 122 fD~ii~~---~~l~------~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
||+||+. +.-. .+ .+....++..+..+|+|||.+++.+.+
T Consensus 205 fD~IilDPP~f~~~~~~~~~~~-~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 205 YDIILTDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp BSEEEECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CCEEEECCCcccccccchhHHH-HHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9999982 2111 11 123456777888999999987666433
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.35 E-value=1.4e-07 Score=73.14 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------------CCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------------NVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------------~~~~~~ 121 (231)
.++.+|||+.||+|.++.+++... .-.++.+|.++..+.. ....++
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~g-----a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGG-----AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-----BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCceeecCCCCcHHHHHHHhCC-----CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence 568899999999999998876321 1134455555433321 113468
Q ss_pred eeEEEEee---------eeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLIF---------MLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~~---------~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
||+|++-= ..... .+...+++.+.++|+|||.++++.
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~~--~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSVS--KDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp EEEEEECCCCC-----CCCCHH--HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCEEEEcChhhccchhHHHHHH--HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 99999831 11111 245678899999999999999874
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=3.7e-07 Score=64.35 Aligned_cols=80 Identities=9% Similarity=0.103 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------------CCCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------------NVNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------------~~~~~~fD~ 124 (231)
..+.+|||+|||+|.++..++.. +.+++.+|.++.++.. ....++||+
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~------ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~ 113 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEeccccchhhhhhhhc------cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccce
Confidence 56789999999999999877643 2244566666555421 224578999
Q ss_pred EEEeeeeeccCCCCHHHHHHHHH--HhcCCCeEEEEEe
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIK--AVLKPDGYILVCD 160 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~l~i~~ 160 (231)
|++.=-.+ .+....+..+. .+|+|||++++..
T Consensus 114 If~DPPY~----~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 114 AFMAPPYA----MDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EEECCCTT----SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred eEEccccc----cCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 98732111 12233444433 4789999988753
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.9e-06 Score=62.56 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
.+..++||+|||+|..+..++... .+.+++++|+++..+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~----~~~~~~~~Di~~~al 98 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATL----NGWYFLATEVDDMCF 98 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH----HCCEEEEEESCHHHH
T ss_pred cccceEEEeCCCchHHHHHHHHhC----CCccccceecCHHHH
Confidence 445789999999999998887332 145667777776554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.9e-06 Score=62.98 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------------CCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------------NVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------------~~~~~ 120 (231)
.+.++|||||||+|.-+.+++.... . +-+++.+|..+..... ....+
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~--~-~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALP--A-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSC--T-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCC--C-CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccC
Confidence 5678999999999999999983321 1 2245555555433210 12357
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+||+|+... ..+.....+..+.+.|+|||++++-+...
T Consensus 135 ~fD~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 135 TFDVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp CEEEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred CccEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 899999843 23567788899999999999999875443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.22 E-value=3.2e-07 Score=63.36 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc-----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE-----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~-----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
-.+.+|||+|||+|.++...+.... -....++++..|.... + ....++||+|++
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~-l--~~~~~~fDiIf~ 89 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-I--DCLTGRFDLVFL 89 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-H--HHBCSCEEEEEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc-c--cccccccceeEe
Confidence 3578999999999999987763210 0011233333443321 1 224678999988
Q ss_pred eeeeeccCCCCHHHHHHHHH--HhcCCCeEEEEEe
Q 045799 128 IFMLSAVSPKKMPLILQNIK--AVLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~--~~Lk~gG~l~i~~ 160 (231)
.-... - ......+..+. +.|+|+|.+++..
T Consensus 90 DPPy~-~--~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 90 DPPYA-K--ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp CCSSH-H--HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhhc-c--chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 32111 1 22345566554 4689999998864
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.04 E-value=1.8e-06 Score=62.98 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------------CCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------------NVNPS 120 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------------~~~~~ 120 (231)
.++.+|||+|||+|..+..++.... .+.+++.+|..+..... ....+
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~---~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~ 131 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQ---PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 131 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred hCCCEEEEEccCchhHHHHHHHhCC---CccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccc
Confidence 4568999999999999999874321 12345566655443221 12346
Q ss_pred CeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 121 SVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 121 ~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
+||+|+.-+.-... .....+.+..++|+|||++++-+...
T Consensus 132 ~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 132 TLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp CEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred ccceeeeccccccc---ccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 89999875321111 11234666778899999987755433
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.03 E-value=8.4e-06 Score=59.39 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------CCCCCCeeEEEEeeeeeccC--
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------NVNPSSVDVVTLIFMLSAVS-- 135 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------~~~~~~fD~ii~~~~l~~~~-- 135 (231)
.++.+|||.|||+|.++..++... .....+.+.|+.+..... ......||+|++.-.+....
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~---~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ii~npP~~~~~~~ 94 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAH---GTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA 94 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHH---CSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred CCcCEEEECCCchHHHHHHHHHhc---cccceEEeeecCHHHHhhcccceeeeeehhccccccccceecccCcccccccc
Confidence 667899999999999987776221 112345566665444321 22357899999865433210
Q ss_pred -C-----------------------C-CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 136 -P-----------------------K-KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 136 -~-----------------------~-~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
. . -...++..+.+.|++||++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 95 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 0 0 12356788999999999987764
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.99 E-value=1.9e-06 Score=61.73 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~~~~~fD~ii~~ 128 (231)
-.+++|||+|||+|.++..++.... -+++++|+++..+.. .-.+++||+|+++
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~ga-----~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N 114 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLLGA-----ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN 114 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTB-----SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-----CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence 4578999999999998876653211 134556655444321 1124789999986
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.99 E-value=3.1e-05 Score=56.87 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC-cc--------------c--------cccceeeeeecCCcccccC-CCCCCCeeEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH-SE--------------F--------REERVNAFVCNVVNDDLSR-NVNPSSVDVVT 126 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~-~~--------------~--------~~~~~~~~~~D~~~~~~~~-~~~~~~fD~ii 126 (231)
....+++|||+|.|-.+..++-. .. | .=.++.++...+. .+.. .-..++||+|+
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E--~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAE--TFGQRKDVRESYDIVT 146 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHH--HHTTCTTTTTCEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhh--hccccccccccceEEE
Confidence 35679999999999999988811 00 0 0011122222111 1110 11246899999
Q ss_pred EeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 127 LIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 127 ~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
+..+ ..+..++.-+...++++|.+++.
T Consensus 147 sRAv------a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 147 ARAV------ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EECC------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred Ehhh------hCHHHHHHHHhhhcccCCEEEEE
Confidence 9764 56888999999999999999886
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.96 E-value=1.4e-05 Score=62.27 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=90.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC------------ccccccceeeeeecCCccccc------------------------
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH------------SEFREERVNAFVCNVVNDDLS------------------------ 114 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~------------~~~~~~~~~~~~~D~~~~~~~------------------------ 114 (231)
+...+|.|+||.+|.++..+... ..-....++++--|+-..++.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 34478999999999999766621 111234566666666554432
Q ss_pred ---CCCCCCCeeEEEEeeeeeccCC--C-----------------------------CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 115 ---RNVNPSSVDVVTLIFMLSAVSP--K-----------------------------KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 115 ---~~~~~~~fD~ii~~~~l~~~~~--~-----------------------------~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.-||+++.|+++++..+|+++. . |+..+|+.-++=|+|||++++..
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 1468899999999999999741 0 23468888889999999999987
Q ss_pred ccCCchhhhh------hhc---c-ccccccceEEe----CCCeEEEeeCHHHHHHHHHHcC-ceEEEEEEEe
Q 045799 161 YAIGDFAQVK------LLD---R-NQMIGDSFYVR----GDGTCSFYFSEDFLSTLFLEAG-FSTVDINIHL 217 (231)
Q Consensus 161 ~~~~~~~~~~------~~~---~-~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~~ 217 (231)
++..+..... +.. . .....+..... .-....++.+.++++..+++.| |++.+++...
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~ 281 (359)
T d1m6ex_ 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE 281 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEE
T ss_pred eccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeee
Confidence 6665321100 000 0 00000000000 0011234678899999998865 7888877544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.89 E-value=2.5e-05 Score=57.18 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------cCCCCCCCeeEEEEeeeeec
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------SRNVNPSSVDVVTLIFMLSA 133 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------~~~~~~~~fD~ii~~~~l~~ 133 (231)
.+..+|+|+|||.|.++..++............+++|...... ....+.+..|+|+|-..-.
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~es- 143 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGES- 143 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC-
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCCEEEeeCCCC-
Confidence 6778999999999999988874432111111112222211100 0133568899999965422
Q ss_pred cCCC-----CHHHHHHHHHHhcCCCeEEEEEeccCCc
Q 045799 134 VSPK-----KMPLILQNIKAVLKPDGYILVCDYAIGD 165 (231)
Q Consensus 134 ~~~~-----~~~~~l~~~~~~Lk~gG~l~i~~~~~~~ 165 (231)
-+.. -...++..+.+.|+|||.|++-.+.+..
T Consensus 144 s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~ 180 (257)
T d2p41a1 144 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM 180 (257)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC
Confidence 1100 1125677788999999999887776553
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.88 E-value=1e-05 Score=58.26 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=37.3
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-------------------CCCCCCeeEEEEeeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NVNPSSVDVVTLIFML 131 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~~~~~fD~ii~~~~l 131 (231)
..+++|||+|||+|.++..++... ...++++|+++..+.. ...+++||+|++.=-+
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g-----~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLG-----AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF 119 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred CCCCEEEECcCcchHHHHHHHHcC-----CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence 467899999999999998776321 1245666666544321 1135689999886544
Q ss_pred e
Q 045799 132 S 132 (231)
Q Consensus 132 ~ 132 (231)
.
T Consensus 120 ~ 120 (201)
T d1wy7a1 120 G 120 (201)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=1.1e-05 Score=61.94 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC-----------------------------CCCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-----------------------------NVNPSS 121 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-----------------------------~~~~~~ 121 (231)
+..++||.||+|.|..+..++.... ..++..+|+.+..++. .-.+++
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~----~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~ 151 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPT----VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEER 151 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCC
T ss_pred CCcceEEEeCCCchHHHHHHHhcCC----cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCc
Confidence 5678999999999999998874321 1122333333222110 113568
Q ss_pred eeEEEEeeeeecc---CCC--CHHHHHHHHHHhcCCCeEEEEE
Q 045799 122 VDVVTLIFMLSAV---SPK--KMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 122 fD~ii~~~~l~~~---~~~--~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
||+|++-..=.+. +.. -...+++.+++.|+|||++++.
T Consensus 152 yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred ccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 9999964421111 001 1257999999999999999874
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.84 E-value=1.3e-05 Score=58.62 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc-------------------------------CCCCC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS-------------------------------RNVNP 119 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~-------------------------------~~~~~ 119 (231)
.+.++|||||+++|.-+.+++.... . +.+++.+|..+.... .....
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~--~-~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~ 134 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIP--E-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH 134 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSC--T-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred cCCCcEEEecchhhhhHHHHHhhCC--C-CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccC
Confidence 4678999999999999999882211 1 123344444432211 01135
Q ss_pred CCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 120 SSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 120 ~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
++||+|+.-. ..+.....+..+.++|+|||++++-+.
T Consensus 135 ~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 135 GSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp TCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred CceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 6899999843 225677899999999999999988654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.81 E-value=9e-06 Score=63.06 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc-cccccceeeeeecCCcccccC---------------------CCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS-EFREERVNAFVCNVVNDDLSR---------------------NVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~-~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~~fD~ii~~ 128 (231)
.++.+|||.|||+|.++..+.... ......++++++|+.+.+... .....+||+|+++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 566789999999999988775211 111224567778876544321 2345789999997
Q ss_pred eeeeccCCC----------------CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 129 FMLSAVSPK----------------KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 129 ~~l~~~~~~----------------~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
=-+...... -...++..+.+.|+|||++++..
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 543211000 12247999999999999987653
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=1.6e-05 Score=57.29 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=52.5
Q ss_pred CCeEEEEcCCCCcchHHHhcCc-----------------------cccccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 73 PKVVLEVGCGAGNTIFPLVSHS-----------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 73 ~~~iLdvGcG~G~~~~~l~~~~-----------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
+.+|+|+|+|.|-.+..++-.. ...-.++.++...+.. .....+||+|++..
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fD~V~sRA 140 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-----FPSEPPFDGVISRA 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-----SCCCSCEEEEECSC
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhh-----hccccccceehhhh
Confidence 4689999999999999998110 0001123333333321 12356899999966
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+ .....++.-+...++++|.+++.-
T Consensus 141 ~------~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 141 F------ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp S------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred h------cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4 567889999999999999998863
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.80 E-value=3.4e-05 Score=56.52 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCc----------------------cccccceeeeeecCCcccccCCCCCCCeeEEEEe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHS----------------------EFREERVNAFVCNVVNDDLSRNVNPSSVDVVTLI 128 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~----------------------~~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~ 128 (231)
.++..|||||++.|.-+..++... .....+++++..|.........+....+|+|+.-
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID 158 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 158 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEc
Confidence 346899999999998766555110 1112344444444433222223345567877664
Q ss_pred eeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 129 FMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 129 ~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
.. |+. +....-+ .+...|++||++++.|.
T Consensus 159 ~~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 159 NA-HAN--TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SS-CSS--HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred CC-cch--HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 42 332 1112223 35689999999999874
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=3.1e-05 Score=54.55 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCccccc--------------------CCCCCCCeeEEEEeee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLS--------------------RNVNPSSVDVVTLIFM 130 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~--------------------~~~~~~~fD~ii~~~~ 130 (231)
.++.+|||+||++|.++..+..... ....++++|+.+.... ......++|+|++-..
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~---~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a 97 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIG---GKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHC---TTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCCeEEEEeccCCcceEEEEeecc---ccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEeccc
Confidence 6788999999999999987763211 1123445555432110 0124568999999665
Q ss_pred eeccCCCC---------HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 131 LSAVSPKK---------MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 131 l~~~~~~~---------~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
...-...+ ....+.-+.++|++||.+++-.+..
T Consensus 98 p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 43211111 1255667779999999999875543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.73 E-value=2.3e-05 Score=59.47 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---------------------------ccccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---------------------------FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+..++||-||.|.|..+..++.+.. +...+++++..|...-. .-..++||
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~yD 164 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV---RKFKNEFD 164 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG---GGCSSCEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHH---hcCCCCCC
Confidence 5678999999999999998884321 11122223333322111 11356899
Q ss_pred EEEEeeeeecc-CC--CCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 124 VVTLIFMLSAV-SP--KKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 124 ~ii~~~~l~~~-~~--~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
+|++-..-... +. --...+++.+++.|+|||++++...
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 99985432211 11 1246899999999999999988643
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=2.9e-05 Score=54.95 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcc----------------------ccccceeeeeecCCcccccCCCCCCCeeEEEEee
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSE----------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTLIF 129 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~----------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~~~ 129 (231)
.+.++||++||+|.++...++... .....+.++..|+..- + ...+.+||+|++.=
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~-l--~~~~~~fDlIf~DP 119 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF-L--AQKGTPHNIVFVDP 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH-H--SSCCCCEEEEEECC
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc-c--cccccccCEEEEcC
Confidence 357899999999999988773210 0111223333333211 1 22467899999843
Q ss_pred eeeccCCCCHHHHHHHHHH--hcCCCeEEEEEe
Q 045799 130 MLSAVSPKKMPLILQNIKA--VLKPDGYILVCD 160 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~--~Lk~gG~l~i~~ 160 (231)
-.. ......++..+.+ +|+++|.+++..
T Consensus 120 PY~---~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 120 PFR---RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp SSS---TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccc---cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 211 1345677777765 589999998853
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.67 E-value=1.6e-05 Score=60.01 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC--------------------C-------------C
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR--------------------N-------------V 117 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~--------------------~-------------~ 117 (231)
+++.+||-||+|.|..+..++.+. ...+ ..+|+.+..+.. + -
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~---~~~v--~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHD---VDEV--IMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSC---CSEE--EEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHhC---CceE--EEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence 667899999999999998887431 1122 223332222110 0 0
Q ss_pred CCCCeeEEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.+++||+|++-..-..-+.. ....+++.+++.|+|||++++..
T Consensus 146 ~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 24689999974432111111 12679999999999999998754
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.58 E-value=5e-05 Score=57.12 Aligned_cols=87 Identities=23% Similarity=0.243 Sum_probs=55.5
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCcc---------------------------ccccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSE---------------------------FREERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~---------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+++++||-||.|.|..+..++.... +...+++++..|...-. .-..++||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l---~~~~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI---AKSENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH---HTCCSCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHH---hhcCCCCC
Confidence 5678999999999999999884321 11223333333332111 11357899
Q ss_pred EEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 124 VVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 124 ~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|+.-..-..-+.. -...+++.+++.|+|||+++...
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 99985432111111 24689999999999999998753
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.56 E-value=5.9e-05 Score=57.16 Aligned_cols=88 Identities=25% Similarity=0.283 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc---------------------------cccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF---------------------------REERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~---------------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+..++||-||.|.|..+..++..... ...+++++..|...... ....++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~--~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK--NAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH--TSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh--hccccCcc
Confidence 56689999999999999998843221 11222222222211110 22456899
Q ss_pred EEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 124 VVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 124 ~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|+.-..=..-+.. -...+++.+++.|+|||++++..
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 99984321111101 13578999999999999998864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.55 E-value=4.6e-05 Score=58.14 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC----------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------------~~~~~~f 122 (231)
+.+++||-||.|.|..+..++.+... .++..+|+.+..++. .-..++|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v----~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESV----EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTC----CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCc----ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 56789999999999999999844221 123333333222110 1135689
Q ss_pred eEEEEeeeeeccCCC--CHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVSPK--KMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~~~--~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|++-..-..-+.. -...+++.+++.|+|||+++...
T Consensus 181 DvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 181 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 999985432211111 23578999999999999998863
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.48 E-value=3.1e-05 Score=54.68 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc-----------------------cccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF-----------------------REERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~-----------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
..+.+|||++||+|.++...++.... ....+.++..|+........-...+||+|++
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 45789999999999999988733110 0113334444443211000113468999987
Q ss_pred eeeeeccCCCCHHHHHHHHHH--hcCCCeEEEEEe
Q 045799 128 IFMLSAVSPKKMPLILQNIKA--VLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~l~i~~ 160 (231)
-=-. .. ......+..+.+ +|+++|.+++..
T Consensus 120 DPPY-~~--~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 120 DPPY-AK--QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp CCCG-GG--CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhh-hh--hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 3211 11 456677887765 699999887753
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=9.6e-05 Score=55.80 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccc---------------------------cccceeeeeecCCcccccCCCCCCCee
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEF---------------------------REERVNAFVCNVVNDDLSRNVNPSSVD 123 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~---------------------------~~~~~~~~~~D~~~~~~~~~~~~~~fD 123 (231)
+.+++||-||.|.|..+..++..... ...+++++..|...-. .-..++||
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l---~~~~~~yD 153 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM---KQNQDAFD 153 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH---HTCSSCEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHH---hcCCCCCC
Confidence 56789999999999999999843221 1122222222222111 11356899
Q ss_pred EEEEeeeeeccCC--CCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 124 VVTLIFMLSAVSP--KKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 124 ~ii~~~~l~~~~~--~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|++-..-..-+. --...+++.+++.|+|||++++..
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 9998542111111 123468999999999999998864
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.37 E-value=0.00012 Score=53.92 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.5
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.++..|||||||+|.++..|+
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~ 48 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLA 48 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHH
T ss_pred CCCCeEEEECCCccHHHHHHH
Confidence 677899999999999999998
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.28 E-value=0.00012 Score=51.47 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~i 125 (231)
..++..++|..+|.|..+..++.. ..+++++|..+.++.. ....+.+|.|
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~------~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgI 89 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGI 89 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcc------cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence 478899999999999999999854 2366777776655421 2234679999
Q ss_pred EEeeeeecc--C--C---CCHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 126 TLIFMLSAV--S--P---KKMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 126 i~~~~l~~~--~--~---~~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++-..+... . . ......|....+.|++||.+++..+..
T Consensus 90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 886544322 0 0 123456888899999999999876543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00016 Score=54.12 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL 113 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~ 113 (231)
+...+||+|||+|..+..++.. . ..+++++|+++..+
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~---~--~~~v~a~Dis~~Al 146 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKF---S--DAIVFATDVSSKAV 146 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH---S--SCEEEEEESCHHHH
T ss_pred cccEEEEeeeeeehhhhhhhhc---c--cceeeechhhhhHH
Confidence 4568999999999988877621 1 34567777776554
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.97 E-value=0.0012 Score=50.42 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccc-----------------------cCCCCCCCeeEE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDL-----------------------SRNVNPSSVDVV 125 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~-----------------------~~~~~~~~fD~i 125 (231)
...++.+|||++||.|.=+..++.... ....++..|.+..-+ ..+..+..||.|
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~---~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~I 189 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMR---NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI 189 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTT---TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred cCCccceeeecccchhhhhHhhhhhcc---cccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEE
Confidence 357889999999999998877761100 011122333322111 112235789999
Q ss_pred EEee------eeeccC-------CC-------CHHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 126 TLIF------MLSAVS-------PK-------KMPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 126 i~~~------~l~~~~-------~~-------~~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
++-. ++..-| .+ -...++..+...|||||.++-++-+.
T Consensus 190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 8822 222111 01 11467888999999999987765444
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.86 E-value=0.00059 Score=47.87 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCCcchHHHhcCcc------------------------ccccceeeeeecCCcccccCCCCCCCeeEEEE
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSE------------------------FREERVNAFVCNVVNDDLSRNVNPSSVDVVTL 127 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~------------------------~~~~~~~~~~~D~~~~~~~~~~~~~~fD~ii~ 127 (231)
.+.++||+-||||.++...++... .......+...|+. ..+.......+||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~-~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL-DFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH-HHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccc-ccccccccCCcccEEEe
Confidence 357899999999999999983311 00111111222211 11111223467999987
Q ss_pred eeeeeccCCCCHHHHHHHHHH--hcCCCeEEEEEe
Q 045799 128 IFMLSAVSPKKMPLILQNIKA--VLKPDGYILVCD 160 (231)
Q Consensus 128 ~~~l~~~~~~~~~~~l~~~~~--~Lk~gG~l~i~~ 160 (231)
-=-.. . .....++..+.. +|+++|++++..
T Consensus 122 DPPY~-~--~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 122 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhHh-h--hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 32111 1 235567777765 689999998863
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.01 Score=45.72 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.1
Q ss_pred CCCCeEEEEcCCCCcchHHHhcC
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSH 93 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~ 93 (231)
.++.+|||+-||+|.++..|+..
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~ 233 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQ 233 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT
T ss_pred CCCceEEEecccccccchhcccc
Confidence 56789999999999999999843
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.74 E-value=0.00087 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.3
Q ss_pred CCCCCeEEEEcCCCCcchHHHh
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
..++..|||||||+|.++..|+
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll 40 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELV 40 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHH
T ss_pred CCCCCeEEEECCCchHHHHHHH
Confidence 3678999999999999999998
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0033 Score=47.15 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeE
Q 045799 69 PNGNPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDV 124 (231)
Q Consensus 69 ~~~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ 124 (231)
...++.+|||+++|.|.=+..++.... +..++..|.+..-+.. ....+.||.
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~----~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred CccccceeEeccCccccchhhhhhhhh----hhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccE
Confidence 357789999999999999988873211 1234555555433210 113468999
Q ss_pred EEEee------eeecc-------CCCC-------HHHHHHHHHHhcCCCeEEEEEeccC
Q 045799 125 VTLIF------MLSAV-------SPKK-------MPLILQNIKAVLKPDGYILVCDYAI 163 (231)
Q Consensus 125 ii~~~------~l~~~-------~~~~-------~~~~l~~~~~~Lk~gG~l~i~~~~~ 163 (231)
|++-. ++..- .+.+ ...+|..+.+.|||||+++-++-+.
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 99832 22211 1111 2477888899999999998765444
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.67 E-value=0.0008 Score=53.66 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=61.1
Q ss_pred chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHhcCcc----ccc-----cceeeeeecCCcccc-------
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLVSHSE----FRE-----ERVNAFVCNVVNDDL------- 113 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~~~~~----~~~-----~~~~~~~~D~~~~~~------- 113 (231)
.+..+...+.+++. ..++.+|||-+||+|.+...+..... ... ......+.|+.....
T Consensus 146 TP~~Iv~~mv~ll~------~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~ 219 (425)
T d2okca1 146 TPRPLIQAMVDCIN------PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 219 (425)
T ss_dssp CCHHHHHHHHHHHC------CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cchhhhHhhheecc------CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhh
Confidence 45566666655553 35678999999999999877651100 000 011233444332221
Q ss_pred -----------------cCCCCCCCeeEEEEeeeeeccC---------------CCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 114 -----------------SRNVNPSSVDVVTLIFMLSAVS---------------PKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 114 -----------------~~~~~~~~fD~ii~~~~l~~~~---------------~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
....+..+||+|+++=-+..-. ...-..+++.+.+.|++||.+.+..
T Consensus 220 ~l~g~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 220 YLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp HHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCCccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 0123457899999965443211 0112368999999999999887753
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0016 Score=53.25 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=25.2
Q ss_pred chhhhHHhhcccccCCCCCCCCCCCeEEEEcCCCCcchHHHh
Q 045799 50 DRHYLEKDWGNYFSDDSCCPNGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.+..+.+.+.+++. ..++.+|+|-+||+|.+.....
T Consensus 148 TP~~Iv~~mv~ll~------~~~~~~i~DPacGsG~fL~~a~ 183 (524)
T d2ar0a1 148 TPRPLIKTIIHLLK------PQPREVVQDPAAGTAGFLIEAD 183 (524)
T ss_dssp CCHHHHHHHHHHHC------CCTTCCEEETTCTTTHHHHHHH
T ss_pred cccchhHhhhhccc------CccchhhcchhhhcchhhHHHH
Confidence 44455555555542 3567799999999999987654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.005 Score=45.23 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.9
Q ss_pred CCCCeEEEEcCCCCcchHHHhc
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVS 92 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~ 92 (231)
.++..|||||||+|.++..|+.
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~ 41 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGE 41 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHc
Confidence 5678999999999999999984
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.017 Score=42.95 Aligned_cols=21 Identities=48% Similarity=0.662 Sum_probs=19.5
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
.++..|||||+|+|.++..|+
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll 40 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLL 40 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 567899999999999999998
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.25 E-value=0.098 Score=40.24 Aligned_cols=35 Identities=11% Similarity=-0.067 Sum_probs=25.8
Q ss_pred CCCeEEEeeCHHHHHHHHHHcCceEEEEEEEeeee
Q 045799 186 GDGTCSFYFSEDFLSTLFLEAGFSTVDINIHLKQI 220 (231)
Q Consensus 186 ~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~ 220 (231)
+..-.....+...+.+.++++||++.....-...+
T Consensus 269 G~~DIT~~VnFs~L~~~~~~~g~~~~~~~tQ~~FL 303 (365)
T d1zkda1 269 GRADLTAHVDFDALGRAAESIGARAHGPVTQGAFL 303 (365)
T ss_dssp TSSEEECCEEHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred CCcceeeeeCHHHHHHHHHhcCcceeccccHHHHH
Confidence 33444567888999999999999998776544443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.96 E-value=0.022 Score=44.23 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC------------------------------------
Q 045799 72 NPKVVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------------------ 115 (231)
Q Consensus 72 ~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------------------ 115 (231)
.+.+|||..||+|..+..++.... .-.++..|+++..++.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~----~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~ 120 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP----AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 120 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS----CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC----CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence 467999999999999987763221 1134555655433311
Q ss_pred ---CCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 116 ---NVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 116 ---~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
.-..+.||+|..- |.-.+..++..+.+.++.||++.+.
T Consensus 121 ~~~~~~~~~fDvIDiD------PfGs~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 121 RLMAERHRYFHFIDLD------PFGSPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HHHHHSTTCEEEEEEC------CSSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhHhhcCcCCcccCC------CCCCcHHHHHHHHHHhccCCEEEEE
Confidence 0023468876552 2255678999999999999999886
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.77 E-value=0.051 Score=40.64 Aligned_cols=43 Identities=14% Similarity=0.049 Sum_probs=36.0
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
..+.--++++-.++.|+++++..++++.+.+...||+.+++.-
T Consensus 163 d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 163 DPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp CTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred CCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3455677888888999998899999999999999999987753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.44 E-value=0.031 Score=37.96 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=44.7
Q ss_pred CCCCCeEEEEcCC-CCcchHHHhcCccccccceeeeeecCCcccccC-------------------CCCCCCeeEEEEee
Q 045799 70 NGNPKVVLEVGCG-AGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR-------------------NVNPSSVDVVTLIF 129 (231)
Q Consensus 70 ~~~~~~iLdvGcG-~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~-------------------~~~~~~fD~ii~~~ 129 (231)
..++.+||-+|+| .|.++..++... +++++.+|.++...+. ....+.+|+|+...
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-----GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-----cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEe
Confidence 3788999999987 444554444211 2344444444322110 11235789887743
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 130 MLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 130 ~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
.-.+- . .+....++|+++|.+++.-
T Consensus 100 ~~~~~--~----~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 100 SSLTD--I----DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp SCSTT--C----CTTTGGGGEEEEEEEEECC
T ss_pred cCCcc--c----hHHHHHHHhhccceEEEec
Confidence 22111 1 1344678999999998864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.97 E-value=0.043 Score=38.33 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCCCCeEEEEcCCC-CcchHHHhcCccccccceeeeeecCCcccccC----------------------C-CCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGA-GNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------N-VNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~-G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~-~~~~~fD~i 125 (231)
..++.+||-+|||. |..+..++.... ...++.+|.++.-++. . .....+|++
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~g----a~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLG----AAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhc----ccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEE
Confidence 37899999999988 445444442211 1134455554322110 0 123468998
Q ss_pred EEeeeeec-------cCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSA-------VSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~-------~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+....... +........+..+.+.++|+|.+.+.-
T Consensus 99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 87543211 111224568999999999999998763
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.28 E-value=0.18 Score=36.61 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=36.0
Q ss_pred eeeecCCcccccCCCCCCCeeEEEEeee----e-------eccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 103 AFVCNVVNDDLSRNVNPSSVDVVTLIFM----L-------SAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 103 ~~~~D~~~~~~~~~~~~~~fD~ii~~~~----l-------~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
++..|....+- .++++++|+|+..=- . .++ +.....+.++.|+|||+|.+++.
T Consensus 7 ~~~~D~le~l~--~l~d~SIDliitDPPYn~~~~~~~~~~~y~--~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 7 YDVCDCLDTLA--KLPDDSVQLIICDPPYNIMLADWDDHMDYI--GWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEECCHHHHHH--TSCTTCEEEEEECCCSBCCGGGGGTCSSHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEechHHHHHh--hCcCCCccEEEECCCCCCCcccccCHHHHH--HHHHHHHHHHHHHhCCCccEEEe
Confidence 34456654443 467889999988321 1 112 23567788999999999999885
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.2 Score=37.19 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.4
Q ss_pred CCCCCeEEEEcCCCCcchHHHh
Q 045799 70 NGNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 70 ~~~~~~iLdvGcG~G~~~~~l~ 91 (231)
..++.+|||+++|+|.-+.+++
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la 113 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLA 113 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHH
T ss_pred CCccceEEecccchhhHHHHHH
Confidence 4678999999999999888876
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=89.40 E-value=0.26 Score=33.43 Aligned_cols=79 Identities=18% Similarity=0.050 Sum_probs=46.6
Q ss_pred CCCCCeEEEEcCCC-CcchHHHhcCccccccceeeeeecCCcccccC----------------------C-CCCCCeeEE
Q 045799 70 NGNPKVVLEVGCGA-GNTIFPLVSHSEFREERVNAFVCNVVNDDLSR----------------------N-VNPSSVDVV 125 (231)
Q Consensus 70 ~~~~~~iLdvGcG~-G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~----------------------~-~~~~~fD~i 125 (231)
..++.+||=+|||. |.++..++...... .++.+|.++.-... . .....+|+|
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~----~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAG----RIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCS----CEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhccccc----ccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceE
Confidence 37788999999986 66666666332111 23444443321110 0 122458987
Q ss_pred EEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 126 TLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 126 i~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+..-.- ...+....++++|+|.+++.-
T Consensus 101 id~~g~--------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 101 IMAGGG--------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred EEccCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 763321 236677889999999998864
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.41 E-value=0.25 Score=35.31 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=47.5
Q ss_pred eeeecCCcccccCCCCCCCeeEEEEeeee----ecc-CC-------CCHHHHHHHHHHhcCCCeEEEEEeccCCchhhhh
Q 045799 103 AFVCNVVNDDLSRNVNPSSVDVVTLIFML----SAV-SP-------KKMPLILQNIKAVLKPDGYILVCDYAIGDFAQVK 170 (231)
Q Consensus 103 ~~~~D~~~~~~~~~~~~~~fD~ii~~~~l----~~~-~~-------~~~~~~l~~~~~~Lk~gG~l~i~~~~~~~~~~~~ 170 (231)
+...|....+- .++++++|+|+..=-. ... .. +....++++++++|+|+|.+++.. .
T Consensus 7 i~~gDcle~l~--~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~--~------- 75 (256)
T d1g60a_ 7 IHQMNCFDFLD--QVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN--T------- 75 (256)
T ss_dssp EEECCHHHHHH--HSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE--C-------
T ss_pred EEeccHHHHHh--hCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc--C-------
Confidence 34555543332 3467888888873211 000 00 123468889999999999887641 0
Q ss_pred hhccccccccceEEeCCCeEEEeeCHHHHHHHHHHcCceEEEEEEE
Q 045799 171 LLDRNQMIGDSFYVRGDGTCSFYFSEDFLSTLFLEAGFSTVDINIH 216 (231)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 216 (231)
......+...+.+.||......++
T Consensus 76 ----------------------~~~~~~~~~~~~~~g~~~~~~iiW 99 (256)
T d1g60a_ 76 ----------------------PFNCAFICQYLVSKGMIFQNWITW 99 (256)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ----------------------chhhhhhhhhhhcccceeeeeeEe
Confidence 011235667778888887775544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.2 Score=33.89 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEE
Q 045799 118 NPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVC 159 (231)
Q Consensus 118 ~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~ 159 (231)
..+.+|+|+... -...+....++|+|+|.++..
T Consensus 94 ~~~g~d~v~d~~---------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 94 GEKGIDIIIEML---------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CTTCEEEEEESC---------HHHHHHHHHHHEEEEEEEEEC
T ss_pred ccCCceEEeecc---------cHHHHHHHHhccCCCCEEEEE
Confidence 345689888732 134678888999999999875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=87.83 E-value=0.29 Score=33.28 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=44.1
Q ss_pred CCCCeEEEEcCCC-CcchHHHhcCccccccce-eeeeecCCcccccC--------------------------CCCCCCe
Q 045799 71 GNPKVVLEVGCGA-GNTIFPLVSHSEFREERV-NAFVCNVVNDDLSR--------------------------NVNPSSV 122 (231)
Q Consensus 71 ~~~~~iLdvGcG~-G~~~~~l~~~~~~~~~~~-~~~~~D~~~~~~~~--------------------------~~~~~~f 122 (231)
.++.+||-+|+|. |..+..++... +. +++.+|.++...+. -.....+
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~-----Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~ 101 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSL-----GAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGA 101 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHT-----TBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCccchhheeccccc-----ccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCc
Confidence 6789999999873 44555555221 11 33444443322110 0123358
Q ss_pred eEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 123 DVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 123 D~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
|+|+.. ..- ...++.+.++|++||.+++.-
T Consensus 102 Dvvid~-----vG~---~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 102 DFILEA-----TGD---SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEEEC-----SSC---TTHHHHHHHHEEEEEEEEECC
T ss_pred eEEeec-----CCc---hhHHHHHHHHhcCCCEEEEEe
Confidence 887753 211 236778889999999997764
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.73 E-value=1.4 Score=32.98 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=42.0
Q ss_pred ceeeeeecCCccccc-----CCCCCCCeeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEecc
Q 045799 100 RVNAFVCNVVNDDLS-----RNVNPSSVDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDYA 162 (231)
Q Consensus 100 ~~~~~~~D~~~~~~~-----~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~~ 162 (231)
+...+++|+...... ..+....--++++-.++.++++++..++++.+.+.. |+|.+++.+..
T Consensus 167 ~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i 233 (328)
T d1rjda_ 167 RYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI 233 (328)
T ss_dssp SEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccC
Confidence 344556666532211 123334556888888999999888899999999888 45677777754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.38 E-value=0.23 Score=37.41 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=18.8
Q ss_pred CCCCeEEEEcCCCCcchHHHh
Q 045799 71 GNPKVVLEVGCGAGNTIFPLV 91 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~ 91 (231)
..+..|||||.|.|.++..|+
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll 62 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFY 62 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHH
T ss_pred cCCCeEEEECCCCCHHHHHHH
Confidence 457789999999999999987
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=84.40 E-value=0.42 Score=31.91 Aligned_cols=78 Identities=10% Similarity=-0.009 Sum_probs=45.1
Q ss_pred CCCCCeEEEEcCCC-CcchHHHhcCccccccceeeeeecCCcccccC---------------------------CCCCCC
Q 045799 70 NGNPKVVLEVGCGA-GNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------------------NVNPSS 121 (231)
Q Consensus 70 ~~~~~~iLdvGcG~-G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------------------~~~~~~ 121 (231)
.+++.+||-+|||. |.++..++... +.+++.+|.++...+. ....+.
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-----Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-----GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-----cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccC
Confidence 37788999999874 33444443211 2344555554332110 001235
Q ss_pred eeEEEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEe
Q 045799 122 VDVVTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 122 fD~ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
+|+|+..- --...+..+.++++++|.+++.-
T Consensus 99 ~D~vid~~--------g~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 99 PNVTIDCS--------GNEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp CSEEEECS--------CCHHHHHHHHHHSCTTCEEEECS
T ss_pred CceeeecC--------CChHHHHHHHHHHhcCCceEEEe
Confidence 77776532 12357788889999999998764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.91 E-value=0.37 Score=32.05 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEec
Q 045799 140 PLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 140 ~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
...+....++|+++|.+++.-.
T Consensus 104 ~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 104 KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp HHHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHHHHHHhccCCceEeccc
Confidence 4578889999999999988643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=83.58 E-value=0.75 Score=30.96 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=46.4
Q ss_pred CCCCCeEEEEcCCC-CcchHHHhcCccccccceeeeeecCCcccccC------------------------CCCCCCeeE
Q 045799 70 NGNPKVVLEVGCGA-GNTIFPLVSHSEFREERVNAFVCNVVNDDLSR------------------------NVNPSSVDV 124 (231)
Q Consensus 70 ~~~~~~iLdvGcG~-G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~------------------------~~~~~~fD~ 124 (231)
..++.+||=+|||. |.++..++..... -.++..|.++.-.+. ....+.+|+
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga----~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGA----SRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCC----ceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 47889999999987 6566665522110 123344444322110 012245777
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCC-eEEEEEec
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPD-GYILVCDY 161 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~g-G~l~i~~~ 161 (231)
++. +. -....+....+.++++ |.+++.-.
T Consensus 102 vie-----~~---G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 102 SLD-----CA---GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEE-----SS---CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEE-----ec---ccchHHHHHHHHhhcCCeEEEecCC
Confidence 765 32 1244788889999996 99988643
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.39 E-value=0.35 Score=32.33 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=44.4
Q ss_pred eEEEEcCCCCcchHHHhcCccccccceeeeeecCCcccccC---------------CCCCCCeeEEEEeeeeeccCCCCH
Q 045799 75 VVLEVGCGAGNTIFPLVSHSEFREERVNAFVCNVVNDDLSR---------------NVNPSSVDVVTLIFMLSAVSPKKM 139 (231)
Q Consensus 75 ~iLdvGcG~G~~~~~l~~~~~~~~~~~~~~~~D~~~~~~~~---------------~~~~~~fD~ii~~~~l~~~~~~~~ 139 (231)
+|+=|||| .++..++..........++++.|.++...+. .......|+|+. +.|++..
T Consensus 3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIil-----a~p~~~~ 75 (171)
T d2g5ca2 3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVML-----SSPVRTF 75 (171)
T ss_dssp EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEE-----CSCHHHH
T ss_pred EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccc-----cCCchhh
Confidence 57778886 4444444111111112356777876544321 112235677776 4555667
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 045799 140 PLILQNIKAVLKPDGYILV 158 (231)
Q Consensus 140 ~~~l~~~~~~Lk~gG~l~i 158 (231)
..++.++...++++..++-
T Consensus 76 ~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 76 REIAKKLSYILSEDATVTD 94 (171)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred hhhhhhhhccccccccccc
Confidence 8889999999988865543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.44 E-value=0.48 Score=31.68 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=46.2
Q ss_pred CCCCeEEEEcCCCCcchHHHhcCccccccce-eeeeecCCcccccC-----------C--------------CCCCCeeE
Q 045799 71 GNPKVVLEVGCGAGNTIFPLVSHSEFREERV-NAFVCNVVNDDLSR-----------N--------------VNPSSVDV 124 (231)
Q Consensus 71 ~~~~~iLdvGcG~G~~~~~l~~~~~~~~~~~-~~~~~D~~~~~~~~-----------~--------------~~~~~fD~ 124 (231)
.++..||=+|||+..+......+.. +. +++.+|..+..++. . -....+|+
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~----G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAM----GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT----TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHc----CCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceE
Confidence 6788999999977655444332211 11 34555554322210 0 01235677
Q ss_pred EEEeeeeeccCCCCHHHHHHHHHHhcCCCeEEEEEec
Q 045799 125 VTLIFMLSAVSPKKMPLILQNIKAVLKPDGYILVCDY 161 (231)
Q Consensus 125 ii~~~~l~~~~~~~~~~~l~~~~~~Lk~gG~l~i~~~ 161 (231)
|+..-. -...++...+++++||.+++.-.
T Consensus 101 vid~~G--------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 101 TIECTG--------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp EEECSC--------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEeccC--------CchhHHHHHHHhcCCCEEEEEec
Confidence 766331 24478889999999999988643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.59 E-value=0.31 Score=32.46 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEe
Q 045799 140 PLILQNIKAVLKPDGYILVCD 160 (231)
Q Consensus 140 ~~~l~~~~~~Lk~gG~l~i~~ 160 (231)
...+....++|+++|.+++.-
T Consensus 104 ~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 104 NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp HHHHHHHHTTEEEEEEEEECC
T ss_pred chHHHHHHHHhcCCcEEEEEE
Confidence 346778889999999998753
|