Citrus Sinensis ID: 045812

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
LSLNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEGFIR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEccccHHHHccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHccHHccHHccccEEEEEEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
LSLNRNNVILArggvagglnreamPRHVAVIMDGNVrwarqrglpssagheAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEGFIR
Flexible Loop (DISEMBL)
lslnrnnvilarggvagglnreaMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEGFIR
Low Complexity Region (SEG)
LSLNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEGFIR
Disordered region (IsUnstruct)
*******VILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGL*****HEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSI*********
Disordered Region (DISOPRED)
***********************MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEGFI*
Disordered Region (DISEMBL)
LSLNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEGFIR
Disordered Region (DISPRO)
*SLNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEGFIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LSLNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKSELEGFIR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q56Y11	310	Dehydrodolichyl diphospha	yes	no	0.8	0.270	0.568	6e-25
Q8DI29	251	Isoprenyl transferase OS=	yes	no	0.819	0.342	0.522	4e-22
Q8YRL4	258	Isoprenyl transferase 2 O	yes	no	0.866	0.352	0.494	2e-21
Q55482	249	Isoprenyl transferase OS=	N/A	no	0.828	0.349	0.505	2e-21
Q7NPE7	249	Isoprenyl transferase OS=	yes	no	0.866	0.365	0.505	3e-21
Q8GY03	289	Dehydrodolichyl diphospha	no	no	0.961	0.349	0.438	4e-21
Q9ZEJ7	249	Isoprenyl transferase OS=	no	no	0.819	0.345	0.5	5e-21
P58563	249	Isoprenyl transferase 1 O	no	no	0.819	0.345	0.5	5e-21
Q7V6T7	265	Isoprenyl transferase OS=	yes	no	0.838	0.332	0.521	5e-21
Q7VBI9	266	Isoprenyl transferase OS=	yes	no	0.761	0.300	0.523	1e-20

>sp|Q56Y11|DDPS2_ARATH Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 4/88 (4%)

Query: 22  EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81
           E MP+HVA+IMDGN RWA+ RGL    GH AGV +L+E+VELC +WG++VLTVFAFS DN
Sbjct: 75  ELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDN 134

Query: 82  W----VEVEFLMKLFEKSIKSELEGFIR 105
           W    +E++FL  LFE+S+K+E +   +
Sbjct: 135 WIRPRIEIDFLFSLFERSLKTEFQNLAK 162

Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp|Q8DI29|ISPT_THEEB Isoprenyl transferase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 4/90 (4%)

Query: 15  VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74
           +   L+R+ +PRHVAVIMDGN RWA+QR LP   GH+ GV +L++L+  C  WG++ LT 
Sbjct: 13  LPADLDRDRLPRHVAVIMDGNGRWAKQRNLPRIMGHQRGVDTLKDLLRCCKDWGIEALTA 72

Query: 75  FAFSYDNW----VEVEFLMKLFEKSIKSEL 100
           +AFS +NW     EVEFLM LFE+ ++ EL
Sbjct: 73  YAFSTENWGRPLPEVEFLMTLFEQVLRREL 102

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q8YRL4|ISPT2_NOSS1 Isoprenyl transferase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS2 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 15  VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74
               L+ + +P+H+AVIMDGN RWA  RGLP  AGH  G R+L+EL+  C  WG+K LT 
Sbjct: 14  TPPDLDPQKIPQHIAVIMDGNGRWATSRGLPRIAGHRQGARTLKELLRCCKDWGIKALTA 73

Query: 75  FAFSYDNWV----EVEFLMKLFEKSIKSELEGFIR 105
           +AFS +NW     EV+FLM LFE+ ++ EL    R
Sbjct: 74  YAFSTENWQRPIEEVDFLMLLFERLLRRELSQMHR 108

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q55482|ISPT_SYNY3 Isoprenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=uppS PE=3 SV=1

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 4/91 (4%)

Query: 15  VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74
           +   L+++ +P+HVAVIMDGN RWA+QRG+P   GH+ GV SL+ L+  C  WG+  LT 
Sbjct: 11  LPPDLDQQRLPQHVAVIMDGNGRWAKQRGMPRIMGHQRGVDSLKNLLRCCDDWGIAALTA 70

Query: 75  FAFSYDNW----VEVEFLMKLFEKSIKSELE 101
           +AFS +NW     EVEFLM LFE+ ++ EL+
Sbjct: 71  YAFSTENWGRPLEEVEFLMTLFERVLRRELK 101

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q7NPE7|ISPT_GLOVI Isoprenyl transferase OS=Gloeobacter violaceus (strain PCC 7421) GN=uppS PE=3 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 61/95 (64%), Gaps = 4/95 (4%)

Query: 14  GVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLT 73
            +   L+   +PRHVA IMDGN RWA +R LP   GH+AGV +L+EL+  C  WG+  LT
Sbjct: 10  SLPSDLDPNRLPRHVAAIMDGNGRWASKRNLPRVMGHQAGVSALKELLRCCKDWGIGALT 69

Query: 74  VFAFSYDNW----VEVEFLMKLFEKSIKSELEGFI 104
           V+AFS +NW     EVEFLM LFEK +  EL   +
Sbjct: 70  VYAFSTENWKRPQYEVEFLMALFEKVLNHELSEMV 104

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q8GY03|DDPS4_ARATH Dehydrodolichyl diphosphate synthase 4 OS=Arabidopsis thaliana GN=At5g58782 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 3   LNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVE 62
           +++   ++        L RE MPRHVAVIMDGN RWA+Q GL +S G+EAG + L E  +
Sbjct: 36  IDKGTYVVGEEETPKELQRELMPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFAD 95

Query: 63  LCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSELEGF 103
           LC + G+  ++ FAFS +NW    +EV+ LM LF++ +KS+++ F
Sbjct: 96  LCFKLGINTVSAFAFSTENWGRHKIEVKCLMYLFQRYLKSKIQFF 140

Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZEJ7|ISPT_ANAVT Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 4/90 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           L RE +P+HVAVIMDGN RWA+++GLP   GH+ GV +L++L+  C  WG++ LT +AFS
Sbjct: 15  LKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAFS 74

Query: 79  YDNWV----EVEFLMKLFEKSIKSELEGFI 104
            +NW     EVEFLM LF++ ++ EL   +
Sbjct: 75  TENWKRPQEEVEFLMTLFQRVLRQELREMV 104

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|P58563|ISPT1_NOSS1 Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS1 PE=3 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 4/90 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           L RE +P+HVAVIMDGN RWA+++GLP   GH+ GV +L++L+  C  WG++ LT +AFS
Sbjct: 15  LKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAFS 74

Query: 79  YDNWV----EVEFLMKLFEKSIKSELEGFI 104
            +NW     EVEFLM LF++ ++ EL   +
Sbjct: 75  TENWKRPQEEVEFLMTLFQRVLRQELREMV 104

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q7V6T7|ISPT_PROMM Isoprenyl transferase OS=Prochlorococcus marinus (strain MIT 9313) GN=uppS PE=3 SV=1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 18  GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
           GL+   +P HVAVIMDGN RWA+ RGLP   GH AGV +L+  + LC  WG+  LT +AF
Sbjct: 20  GLDPYRLPNHVAVIMDGNGRWAKARGLPRMVGHRAGVEALKRTLRLCSDWGIGALTAYAF 79

Query: 78  SYDNWV----EVEFLMKLFEKSIKSELEGFIR 105
           S +NW     EV FLM LFE+ ++ ELE   R
Sbjct: 80  STENWSRPGDEVNFLMTLFERVLQRELESLER 111

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q7VBI9|ISPT_PROMA Isoprenyl transferase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=uppS PE=3 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 4/84 (4%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
           +P H+A+IMDGN RWA  + LP + GH AGV +L++ + LC  WG+ VLTV+AFS +NW 
Sbjct: 27  LPEHIAIIMDGNGRWANAKKLPRAMGHSAGVDALKQTLRLCNDWGIGVLTVYAFSTENWS 86

Query: 84  ----EVEFLMKLFEKSIKSELEGF 103
               EV FLM LFE+ +K ELE  
Sbjct: 87  RPKEEVNFLMTLFERVLKKELEAL 110

Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
147833024	592	hypothetical protein VITISV_028791 [Viti	0.876	0.155	0.677	2e-32
224104283	234	predicted protein [Populus trichocarpa]	0.780	0.350	0.770	3e-31
359478855	311	PREDICTED: dehydrodolichyl diphosphate s	0.876	0.295	0.677	8e-31
356553066	322	PREDICTED: dehydrodolichyl diphosphate s	0.828	0.270	0.670	4e-30
224054548	242	predicted protein [Populus trichocarpa]	0.838	0.363	0.688	2e-29
395146547	290	hypothetical protein [Linum usitatissimu	0.838	0.303	0.652	2e-28
297745904	233	unnamed protein product [Vitis vinifera]	0.780	0.351	0.697	3e-28
449450932	301	PREDICTED: dehydrodolichyl diphosphate s	0.828	0.289	0.648	1e-27
255569335	310	undecaprenyl pyrophosphate synthetase, p	0.866	0.293	0.642	1e-27
357490673	310	Dehydrodolichyl diphosphate synthase [Me	0.828	0.280	0.659	1e-27

>gi|147833024|emb|CAN61894.1| hypothetical protein VITISV_028791 [Vitis vinifera]

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/96 (67%), Positives = 77/96 (80%), Gaps = 4/96 (4%)

Query: 14  GVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLT 73
           G   GL RE MP HVAVIMDGNVRWA++RGLP+++GH+AGVRSLRELV LCC+WG+KVL+
Sbjct: 75  GFPDGLRRELMPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLS 134

Query: 74  VFAFSYDNWV----EVEFLMKLFEKSIKSELEGFIR 105
           VFAFSYDNW     EV FLM L E+ +K+EL  F R
Sbjct: 135 VFAFSYDNWSRSEGEVGFLMSLIERVVKAELPNFGR 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104283|ref|XP_002313383.1| predicted protein [Populus trichocarpa] gi|222849791|gb|EEE87338.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 74/87 (85%), Gaps = 5/87 (5%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPS-SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82
           MPRHVAVIMDGN RWARQRG  + SAGHEAG RSLRELVELCC WGV+VLTVFAFSYDNW
Sbjct: 1   MPRHVAVIMDGNARWARQRGFIALSAGHEAGARSLRELVELCCDWGVRVLTVFAFSYDNW 60

Query: 83  ----VEVEFLMKLFEKSIKSELEGFIR 105
               VEV+FLM LFE+ +KSEL+ F+R
Sbjct: 61  IRPKVEVDFLMSLFERMLKSELDNFVR 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478855|ref|XP_002279235.2| PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Vitis vinifera]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 77/96 (80%), Gaps = 4/96 (4%)

Query: 14  GVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLT 73
           G   GL RE MP HVAVIMDGNVRWA++RGLP+++GH+AGVRSLRELV LCC+WG+KVL+
Sbjct: 69  GFPDGLRRELMPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLS 128

Query: 74  VFAFSYDNWV----EVEFLMKLFEKSIKSELEGFIR 105
           VFAFSYDNW     EV FLM L E+ +K+EL  F R
Sbjct: 129 VFAFSYDNWSRSEGEVGFLMSLIERVVKAELPNFGR 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553066|ref|XP_003544879.1| PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Glycine max]

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/91 (67%), Positives = 75/91 (82%), Gaps = 4/91 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           L  E MP+HVAVIMDGN RWA+ +GLP SAGH+AGV+SLR++V LCC WG+KVLTVFAFS
Sbjct: 84  LAAEMMPKHVAVIMDGNGRWAKVKGLPPSAGHQAGVQSLRKMVRLCCSWGIKVLTVFAFS 143

Query: 79  YDNW----VEVEFLMKLFEKSIKSELEGFIR 105
            DNW    VEV+FLM+LFE++I SE++ F R
Sbjct: 144 TDNWVRPKVEVDFLMRLFERTINSEVQTFKR 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054548|ref|XP_002298315.1| predicted protein [Populus trichocarpa] gi|222845573|gb|EEE83120.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 76/93 (81%), Gaps = 5/93 (5%)

Query: 18  GLNREAMPRHVAVIMDGNVRWARQRGLPS-SAGHEAGVRSLRELVELCCRWGVKVLTVFA 76
           GL RE MPRHVAVIMDGN +WARQRG  + SAGHEAG RSLRELV+ CC WG++VLTVFA
Sbjct: 4   GLRREVMPRHVAVIMDGNAKWARQRGFSAASAGHEAGGRSLRELVKSCCEWGIRVLTVFA 63

Query: 77  FSYDNW----VEVEFLMKLFEKSIKSELEGFIR 105
           FSYDNW    +EV FL+ LFE+ ++SEL+ F+R
Sbjct: 64  FSYDNWTRPKMEVVFLLSLFERMLQSELDNFMR 96

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146547|gb|AFN53700.1| hypothetical protein [Linum usitatissimum]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 75/92 (81%), Gaps = 4/92 (4%)

Query: 18  GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
           GL  + +PRHVAVIMDGN RWA+QRGL + AGHEAGVRSL+E+V LC +WG+ VLTVFAF
Sbjct: 52  GLREDLIPRHVAVIMDGNGRWAKQRGLVAGAGHEAGVRSLKEMVRLCIQWGISVLTVFAF 111

Query: 78  SYDNW----VEVEFLMKLFEKSIKSELEGFIR 105
           S DNW    VEV+FLM LFE+++++ELE  +R
Sbjct: 112 STDNWIRPKVEVDFLMSLFERALRTELEDIVR 143

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745904|emb|CBI15960.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%), Gaps = 4/86 (4%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
           MP HVAVIMDGNVRWA++RGLP+++GH+AGVRSLRELV LCC+WG+KVL+VFAFSYDNW 
Sbjct: 1   MPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLSVFAFSYDNWS 60

Query: 84  ----EVEFLMKLFEKSIKSELEGFIR 105
               EV FLM L E+ +K+EL  F R
Sbjct: 61  RSEGEVGFLMSLIERVVKAELPNFGR 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450932|ref|XP_004143216.1| PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Cucumis sativus] gi|449496707|ref|XP_004160203.1| PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Cucumis sativus]

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 4/91 (4%)

Query: 15  VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74
           + GGL +E +PRHVAVIMDGNVRWAR   +  S GH+AGVRSLRE+V+LC  W + VL+V
Sbjct: 59  LPGGLQKEFLPRHVAVIMDGNVRWARAMNMADSKGHDAGVRSLREMVDLCLEWDIPVLSV 118

Query: 75  FAFSYDNWV----EVEFLMKLFEKSIKSELE 101
           FAFSYDNW+    EVEFLM LFE+ +KSE+E
Sbjct: 119 FAFSYDNWLRSKREVEFLMFLFERVLKSEME 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569335|ref|XP_002525635.1| undecaprenyl pyrophosphate synthetase, putative [Ricinus communis] gi|223535071|gb|EEF36753.1| undecaprenyl pyrophosphate synthetase, putative [Ricinus communis]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 73/95 (76%), Gaps = 4/95 (4%)

Query: 15  VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTV 74
           +  GL  E MPRHVAVIMDGN RWA+Q+G P S GHEAGVRSL E++ LC  WG+KVLTV
Sbjct: 69  LPDGLLLELMPRHVAVIMDGNGRWAKQQGWPPSKGHEAGVRSLMEIMNLCGHWGIKVLTV 128

Query: 75  FAFSYDNW----VEVEFLMKLFEKSIKSELEGFIR 105
           FAFS +NW    VE++FLM LFE+ +KSELE  +R
Sbjct: 129 FAFSCENWTRPKVEIDFLMSLFERVLKSELENLLR 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490673|ref|XP_003615624.1| Dehydrodolichyl diphosphate synthase [Medicago truncatula] gi|355516959|gb|AES98582.1| Dehydrodolichyl diphosphate synthase [Medicago truncatula]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 71/91 (78%), Gaps = 4/91 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           L  + MP+HVAVIMDGN RWA+ RGLP+SAGH AG++SLR +V LC  WG+KVLTVFAFS
Sbjct: 73  LQADLMPKHVAVIMDGNGRWAKMRGLPASAGHVAGIKSLRRMVMLCYSWGIKVLTVFAFS 132

Query: 79  YDNW----VEVEFLMKLFEKSIKSELEGFIR 105
            DNW    VEVEFLM LFE++I SE+E   R
Sbjct: 133 TDNWIRPKVEVEFLMSLFERTINSEIEALER 163

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2178823	310	cPT4 "cis-prenyltransferase 4"	0.828	0.280	0.560	9.7e-25
TAIR|locus:505006701	289	cPT6 "cis-prenyltransferase 6"	0.809	0.294	0.516	5.7e-20
TAIR|locus:2178838	302	cPT5 "cis -prenyltransferase 5	0.828	0.288	0.516	1.5e-19
TIGR_CMR|SPO_1665	243	SPO_1665 "undecaprenyl diphosp	0.714	0.308	0.569	2.2e-18
TAIR|locus:2046867	303	CPT "cis-prenyltransferase" [A	0.838	0.290	0.483	7.5e-18
TAIR|locus:2046857	253	AT2G23400 [Arabidopsis thalian	0.828	0.343	0.461	9.5e-18
TAIR|locus:505006702	302	AT5G58784 [Arabidopsis thalian	0.761	0.264	0.511	4.1e-17
TIGR_CMR|GSU_1917	246	GSU_1917 "undecaprenyl diphosp	0.780	0.333	0.5	8.6e-17
TIGR_CMR|CHY_1781	255	CHY_1781 "undecaprenyl diphosp	0.790	0.325	0.459	1.1e-16
TIGR_CMR|CBU_1382	237	CBU_1382 "undecaprenyl diphosp	0.742	0.329	0.512	1.8e-16

TAIR|locus:2178823 cPT4 "cis-prenyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 51/91 (56%), Positives = 69/91 (75%)

Query:    19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
             L+ E MP+HVA+IMDGN RWA+ RGL    GH AGV +L+E+VELC +WG++VLTVFAFS
Sbjct:    72 LHAELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFS 131

Query:    79 YDNWV----EVEFLMKLFEKSIKSELEGFIR 105
              DNW+    E++FL  LFE+S+K+E +   +
Sbjct:   132 TDNWIRPRIEIDFLFSLFERSLKTEFQNLAK 162

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

TAIR|locus:505006701 cPT6 "cis-prenyltransferase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 46/89 (51%), Positives = 64/89 (71%)

Query:    19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
             L RE MPRHVAVIMDGN RWA+Q GL +S G+EAG + L E  +LC + G+  ++ FAFS
Sbjct:    52 LQRELMPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFAFS 111

Query:    79 YDNW----VEVEFLMKLFEKSIKSELEGF 103
              +NW    +EV+ LM LF++ +KS+++ F
Sbjct:   112 TENWGRHKIEVKCLMYLFQRYLKSKIQFF 140

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

TAIR|locus:2178838 cPT5 "cis -prenyltransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 47/91 (51%), Positives = 63/91 (69%)

Query:    19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
             L RE MPRHVAVIMDGN RWA++ GL +S GHEAG + L E  ELC + G+  ++ FAFS
Sbjct:    65 LQRELMPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAFAFS 124

Query:    79 YDNW----VEVEFLMKLFEKSIKSELEGFIR 105
              +NW    +EV+ LM L +  +KS+++ F R
Sbjct:   125 TENWGRHKIEVKCLMSLIQHYLKSKIQYFQR 155

GO:0005576 "extracellular region" evidence=ISM

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

GO:0002094 "polyprenyltransferase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0050267 "rubber cis-polyprenylcistransferase activity" evidence=IGI

TIGR_CMR|SPO_1665 SPO_1665 "undecaprenyl diphosphate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 45/79 (56%), Positives = 54/79 (68%)

Query:    25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW-- 82
             PRHVA+IMDGN RWA+ RG P   GH AG R +RE+VE C + G+K LT+FAFS +NW  
Sbjct:    13 PRHVAIIMDGNGRWAQARGRPRLFGHHAGARRVREVVEACPQLGIKYLTIFAFSTENWKR 72

Query:    83 --VEVEFLMKLFEKSIKSE 99
               VEV  LM LF + I  E
Sbjct:    73 TQVEVAGLMSLFRRYIAKE 91

GO:0005737 "cytoplasm" evidence=ISS

GO:0008834 "di-trans,poly-cis-decaprenylcistransferase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TAIR|locus:2046867 CPT "cis-prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 45/93 (48%), Positives = 61/93 (65%)

Query:    18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
             GL RE MPRHVA I+DGN RWA++ GL +S GHEAG + L ++ ELC   GV  ++ FAF
Sbjct:    64 GLQRELMPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAF 123

Query:    78 SYDNW----VEVEFLMKLFEK-SIKSELEGFIR 105
             S +NW    +E++ LM L +    KS ++ F R
Sbjct:   124 STENWGRDKIEIDNLMSLIQHYRNKSNIKFFHR 156

GO:0005576 "extracellular region" evidence=ISM

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

TAIR|locus:2046857 AT2G23400 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 42/91 (46%), Positives = 60/91 (65%)

Query:    19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
             L RE MPRHV+ I+DGN RWA++ GL ++ GHEAG + + E+ E+C   G+  ++ FAFS
Sbjct:    31 LQRELMPRHVSFILDGNRRWAKRDGLTTAQGHEAGTKRIIEIAEVCFELGIHTVSAFAFS 90

Query:    79 YDNW----VEVEFLMKLFEKSIKSELEGFIR 105
              +NW     EV+ LM LF   +KS ++ F R
Sbjct:    91 TENWGRDKFEVKCLMSLFNHYLKSNIQYFQR 121

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

TAIR|locus:505006702 AT5G58784 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 43/84 (51%), Positives = 56/84 (66%)

Query:    21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80
             R  MP+HVAVI+DGN RWA +RGL +S GHEAG R L E  + C   G   +++FAFS +
Sbjct:    67 RNIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAFSTE 126

Query:    81 NWV----EVEFLMKLFEKSIKSEL 100
             NW     EV+ LM LFEK + S++
Sbjct:   127 NWERPEDEVKCLMALFEKYLASDM 150

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0019408 "dolichol biosynthetic process" evidence=IGI;RCA

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IGI

TIGR_CMR|GSU_1917 GSU_1917 "undecaprenyl diphosphate synthase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 43/86 (50%), Positives = 59/86 (68%)

Query:    18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
             GL  + +PRH+A+IMDGN RWA++R L    GH+ GV ++R +VE C R G+  LT+FAF
Sbjct:     3 GLIPDKLPRHLAIIMDGNGRWAQERMLTRIIGHQKGVETVRIIVEECSRLGIGYLTLFAF 62

Query:    78 SYDNWV----EVEFLMKLFEKSIKSE 99
             S +NW+    EV+ LM L +K I SE
Sbjct:    63 SAENWLRPKTEVKALMALLKKYIASE 88

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1781 CHY_1781 "undecaprenyl diphosphate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/87 (45%), Positives = 57/87 (65%)

Query:    19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
             L+   MPRH+A+IMDGN RWA++RG+P   GH AGV ++R +V+ C +  V  LT++AFS
Sbjct:    18 LDFRKMPRHIAIIMDGNGRWAKKRGMPRYFGHRAGVETVRRVVKFCAKLNVPYLTLYAFS 77

Query:    79 YDNW----VEVEFLMKLFEKSIKSELE 101
              +NW     EV  LM L  + I+ E +
Sbjct:    78 TENWRRPQEEVNVLMNLLVEYIEKETD 104

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|CBU_1382 CBU_1382 "undecaprenyl diphosphate synthase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 42/82 (51%), Positives = 54/82 (65%)

Query:    24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
             +PRHVA++MDGN RWA +RGLP  AGH AG + +R +VE      ++VLT+FAFS +N  
Sbjct:     2 IPRHVAIVMDGNGRWANRRGLPRVAGHRAGAKVVRRIVEYAAEKPLEVLTLFAFSIENRA 61

Query:    84 ----EVEFLMKLFEKSIKSELE 101
                 EV FLM LF  S+K   E
Sbjct:    62 RPQSEVNFLMSLFLDSLKKNTE 83

GO:0008834 "di-trans,poly-cis-decaprenylcistransferase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1.31	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_IX000553	hypothetical protein (234 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00060040	SubName- Full=Putative uncharacterized protein; (342 aa)						•	•		0.911
	gw1.IV.3487.1	hypothetical protein (293 aa)						•	•		0.910
	fgenesh4_pm.C_LG_II001087	hypothetical protein (287 aa)						•	•		0.910
	gw1.VII.3333.1	annotation not avaliable (311 aa)						•	•		0.909
	gw1.II.860.1	hypothetical protein (306 aa)						•	•		0.906
	estExt_Genewise1_v1.C_570227	hypothetical protein (366 aa)						•	•		0.904
	gw1.XV.832.1	hypothetical protein (236 aa)						•			0.899
	grail3.0137000601	hypothetical protein (134 aa)						•			0.899
	grail3.0045022601	hypothetical protein (259 aa)						•			0.899
	grail3.0001025501	hypothetical protein (314 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
PRK14831	249	PRK14831, PRK14831, undecaprenyl pyrophosphate syn	2e-37
COG0020	245	COG0020, UppS, Undecaprenyl pyrophosphate synthase	3e-34
PRK14830	251	PRK14830, PRK14830, undecaprenyl pyrophosphate syn	9e-34
pfam01255	222	pfam01255, Prenyltransf, Putative undecaprenyl dip	6e-33
cd00475	221	cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate S	6e-33
TIGR00055	226	TIGR00055, uppS, undecaprenyl diphosphate synthase	3e-31
PRK14836	253	PRK14836, PRK14836, undecaprenyl pyrophosphate syn	5e-30
PRK14832	253	PRK14832, PRK14832, undecaprenyl pyrophosphate syn	7e-30
PRK14833	233	PRK14833, PRK14833, undecaprenyl pyrophosphate syn	1e-29
PRK14839	239	PRK14839, PRK14839, undecaprenyl pyrophosphate syn	4e-25
PRK14838	242	PRK14838, PRK14838, undecaprenyl pyrophosphate syn	2e-23
PRK14834	249	PRK14834, PRK14834, undecaprenyl pyrophosphate syn	2e-22
PRK14841	233	PRK14841, PRK14841, undecaprenyl pyrophosphate syn	4e-21
PRK14829	243	PRK14829, PRK14829, undecaprenyl pyrophosphate syn	1e-19
PRK14837	230	PRK14837, PRK14837, undecaprenyl pyrophosphate syn	3e-19
PRK14840	250	PRK14840, PRK14840, undecaprenyl pyrophosphate syn	8e-18
PRK14835	275	PRK14835, PRK14835, undecaprenyl pyrophosphate syn	3e-16
PTZ00349	322	PTZ00349, PTZ00349, dehydrodolichyl diphosphate sy	1e-15
PRK14842	241	PRK14842, PRK14842, undecaprenyl pyrophosphate syn	2e-15
PRK14827	296	PRK14827, PRK14827, undecaprenyl pyrophosphate syn	3e-15
PRK10240	229	PRK10240, PRK10240, undecaprenyl pyrophosphate syn	9e-14
PRK14828	256	PRK14828, PRK14828, undecaprenyl pyrophosphate syn	2e-11

>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase; Provisional

 Score =  125 bits (317), Expect = 2e-37
 Identities = 45/88 (51%), Positives = 61/88 (69%), Gaps = 4/88 (4%)

Query: 18  GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
            L+ + +P+HVAVIMDGN RWA++RGLP   GH  GV +L++L+  C  WG+  LT +AF
Sbjct: 14  DLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAF 73

Query: 78  SYDNWV----EVEFLMKLFEKSIKSELE 101
           S +NW     EV FLM LFE+ ++ ELE
Sbjct: 74  STENWSRPLEEVNFLMTLFERVLRRELE 101

Length = 249

>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]

 Score =  117 bits (296), Expect = 3e-34
 Identities = 46/86 (53%), Positives = 64/86 (74%), Gaps = 4/86 (4%)

Query: 20  NREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSY 79
               +PRHVA+IMDGN RWA++RGLP   GH+AG ++LRE++E C   G+K LT++AFS 
Sbjct: 12  LPARLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFST 71

Query: 80  DNW----VEVEFLMKLFEKSIKSELE 101
           +NW     EV FLM+LFEK+++ EL+
Sbjct: 72  ENWKRPKEEVSFLMELFEKALREELK 97

Length = 245

>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional

 Score =  116 bits (293), Expect = 9e-34
 Identities = 37/86 (43%), Positives = 60/86 (69%), Gaps = 4/86 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           L++  +P+H+A+IMDGN RWA++R LP  AGH+AG+ +++++ +     GVKVLT++AFS
Sbjct: 17  LDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFS 76

Query: 79  YDNWV----EVEFLMKLFEKSIKSEL 100
            +NW     EV+FLM L  + +   +
Sbjct: 77  TENWKRPKDEVKFLMNLPVEFLDKFV 102

Length = 251

>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase

 Score =  113 bits (285), Expect = 6e-33
 Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 4/75 (5%)

Query: 31  IMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVE 86
           IMDGN RWA++RGLP + GH AG  ++RE++E C   G+K LT++AFS +NW     EV+
Sbjct: 1   IMDGNRRWAKKRGLPRTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEVD 60

Query: 87  FLMKLFEKSIKSELE 101
           FLM+L E+ ++  LE
Sbjct: 61  FLMELLERKLRRLLE 75

Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase. Length = 222

>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates

 Score =  113 bits (285), Expect = 6e-33
 Identities = 39/81 (48%), Positives = 55/81 (67%), Gaps = 4/81 (4%)

Query: 25  PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW-- 82
           P+HVA IMDGN RWA+QRG+    GH+AG   LR+++  C   GVK +T++AFS +NW  
Sbjct: 1   PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKR 60

Query: 83  --VEVEFLMKLFEKSIKSELE 101
              EV+FLM+LF   ++  L+
Sbjct: 61  PKEEVDFLMELFRDVLRRILK 81

A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity. Length = 221

>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase

 Score =  109 bits (274), Expect = 3e-31
 Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 4/79 (5%)

Query: 26  RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW--- 82
           RHVA+IMDGN RWA+++G P + GH+AGV+SLR ++  C   GV+ LT++AFS +NW   
Sbjct: 1   RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRP 60

Query: 83  -VEVEFLMKLFEKSIKSEL 100
             EV+FLM+LFEK +  E+
Sbjct: 61  KEEVDFLMELFEKKLDREV 79

This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 226

>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional

 Score =  106 bits (267), Expect = 5e-30
 Identities = 42/84 (50%), Positives = 61/84 (72%), Gaps = 4/84 (4%)

Query: 22  EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81
           E +PRH+A+IMDGN RWA++RG P   GH AGVR++R  +E C   G+++LT+FAFS +N
Sbjct: 12  ENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSEN 71

Query: 82  WV----EVEFLMKLFEKSIKSELE 101
           W+    EV  LM+LF K++  E++
Sbjct: 72  WLRPADEVSALMELFLKALDREVD 95

Length = 253

>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase; Provisional

 Score =  106 bits (266), Expect = 7e-30
 Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 4/86 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           L+ + +P+H+AVIMDGN RWA  +GLP  AGH  G R+L+EL+  C  WG+K LT +AFS
Sbjct: 13  LDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFS 72

Query: 79  YDNWV----EVEFLMKLFEKSIKSEL 100
            +NW     EV+FLM LFE+ ++ EL
Sbjct: 73  TENWQRPIEEVDFLMLLFERLLRREL 98

Length = 253

>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase; Provisional

 Score =  105 bits (264), Expect = 1e-29
 Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 4/85 (4%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
             +H+A+IMDGN RWA+ RG   +AGH+ GV++LRE+   C    ++ LT++AFS +NW 
Sbjct: 4   TLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWK 63

Query: 83  ---VEVEFLMKLFEKSIKSELEGFI 104
               EV+FLMKL +K +K E   ++
Sbjct: 64  RPKSEVDFLMKLLKKYLKDERSTYL 88

Length = 233

>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase; Provisional

 Score = 94.1 bits (234), Expect = 4e-25
 Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 27  HVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW---- 82
           HVA+IMDGN RWA  RGLP  AGH AGV ++R +VE     G+  LT++AFS DNW    
Sbjct: 12  HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPA 71

Query: 83  VEVEFLMKLFEKSIKSELEGFIR 105
            EV  LM+L    +++E E   R
Sbjct: 72  AEVGGLMRLLRAYLRNETERLAR 94

Length = 239

>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase; Provisional

 Score = 89.5 bits (222), Expect = 2e-23
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
          ++   +P+H+A+IMDGN RWA++RG   S GH+AG  ++  + E   R GVK LT++ FS
Sbjct: 5  IDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFS 64

Query: 79 YDNWV----EVEFLMKLFEKSIKSE 99
           +NW     EV  LM L   SI+ E
Sbjct: 65 TENWNRPSDEVAALMSLLLDSIEEE 89

Length = 242

>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase; Provisional

 Score = 87.5 bits (217), Expect = 2e-22
 Identities = 42/94 (44%), Positives = 55/94 (58%), Gaps = 4/94 (4%)

Query: 11  ARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVK 70
           A        +  ++PRHVA+IMDGN RWA+ RGLP +AGH AGV +LR +V      G+ 
Sbjct: 1   AAAPAKDESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIG 60

Query: 71  VLTVFAFSYDNWV----EVEFLMKLFEKSIKSEL 100
            LT+FAFS +NW     EV  L  L    I+ +L
Sbjct: 61  YLTLFAFSSENWSRPASEVSDLFGLLRLFIRRDL 94

Length = 249

>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional

 Score = 83.5 bits (206), Expect = 4e-21
 Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
           +P+HVA+IMDGN RWA++RGLP   GH+ G   L   V+     G+K LT F+FS +NW 
Sbjct: 3   IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWK 62

Query: 84  ----EVEFLMKLFEKSIKSELE 101
               EVEFLM LF + I  E+E
Sbjct: 63  RPKEEVEFLMDLFVQMIDREME 84

Length = 233

>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional

 Score = 79.4 bits (196), Expect = 1e-19
 Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 4/73 (5%)

Query: 21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYD 80
          +  +PRH+AV+MDGN RWA QRGL  + GH+AG   L ++V      GV  L+++ FS +
Sbjct: 11 KNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTE 70

Query: 81 NWV----EVEFLM 89
          NW     EV FLM
Sbjct: 71 NWKRSPDEVRFLM 83

Length = 243

>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase; Provisional

 Score = 78.3 bits (193), Expect = 3e-19
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 4/87 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           +N+ ++P HV +IMDGN RWA ++GL    GH+ G++  +E+V+   + G+K L+++ FS
Sbjct: 1   MNKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60

Query: 79  YDNW----VEVEFLMKLFEKSIKSELE 101
            +NW     E+E LM L    + SE  
Sbjct: 61  TENWNRTDSEIEHLMFLIADYLSSEFN 87

Length = 230

>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase; Provisional

 Score = 74.9 bits (184), Expect = 8e-18
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 8/87 (9%)

Query: 22  EAMPRHVAVIMDGNVRWARQ----RGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
           +++PRHVA+IMDGN RW R+        + +GH  G +SL ++V+     G++VLT+FAF
Sbjct: 16  QSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAF 75

Query: 78  SYDNWV----EVEFLMKLFEKSIKSEL 100
           S +N+     EV  L  LF   + S+L
Sbjct: 76  STENFSRSKEEVAELFSLFNSQLDSQL 102

Length = 250

>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase; Provisional

 Score = 71.4 bits (175), Expect = 3e-16
 Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
           +PRH+ +I+DGN R+AR  GL    GHE GV+   E++E C   G+  +T++ FS DN+ 
Sbjct: 41  LPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFS 100

Query: 83  ---VEVEFLMKLFEKSIK 97
               EVE LM LFE+  +
Sbjct: 101 RSPAEVETLMNLFEREAR 118

Length = 275

>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase; Provisional

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 28/70 (40%), Positives = 50/70 (71%), Gaps = 4/70 (5%)

Query: 26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW--- 82
          +H+++IMDGN R+A+++GL S+ GH  G ++L +++E+C +  +K+L+VF+FS  N+   
Sbjct: 21 KHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRS 80

Query: 83 -VEVEFLMKL 91
            E+ FL  L
Sbjct: 81 PEEIHFLFYL 90

Length = 322

>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase; Provisional

 Score = 68.9 bits (168), Expect = 2e-15
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 18  GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAF 77
           GL    +P H+AVIMDGN RWA  +G   S GH  G  ++  L++    +G+K ++++AF
Sbjct: 2   GLFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAF 61

Query: 78  SYDNW----VEVEFLMKLFEKSIKSELE 101
           S +NW     E+  +  L  + I++ L+
Sbjct: 62  STENWKRPITEIRSIFGLLVEFIETRLD 89

Length = 241

>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase; Provisional

 Score = 68.8 bits (168), Expect = 3e-15
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
           +P HVA++MDGN RWA QRGL  + GH+ G   + ++       G+K L+++AFS +NW 
Sbjct: 67  LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWK 126

Query: 84  ----EVEFLM 89
               EV FLM
Sbjct: 127 RSPEEVRFLM 136

Length = 296

>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase; Provisional

 Score = 63.8 bits (155), Expect = 9e-14
 Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 32  MDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEF 87
           MDGN RWA+++G   + GH+AG +S+R  V      G++ LT++AFS +NW     EV  
Sbjct: 1   MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA 60

Query: 88  LMKLFEKSIKSELEGFIR 105
           LM+LF  ++ SE++   R
Sbjct: 61  LMELFVWALDSEVKSLHR 78

Length = 229

>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 15 VAGGLNREAMPRHVAVIMDGNVRWARQRGLPS-SAGHEAGVRSLRELVELCCRWGVKVLT 73
          + G L+   +P HV +I+DGN RWAR+ G    S GH AG   + E +  C    V V+T
Sbjct: 17 LLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVT 76

Query: 74 VFAFSYDN 81
          ++  S DN
Sbjct: 77 LYLLSTDN 84

Length = 256

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PRK14837	230	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14831	249	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14842	241	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14832	253	undecaprenyl pyrophosphate synthase; Provisional	100.0
PTZ00349	322	dehydrodolichyl diphosphate synthetase; Provisiona	100.0
PRK14829	243	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14827	296	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14833	233	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14841	233	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14840	250	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14828	256	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14834	249	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14835	275	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14838	242	undecaprenyl pyrophosphate synthase; Provisional	100.0
cd00475	221	CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (	100.0
PRK14836	253	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14839	239	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14830	251	undecaprenyl pyrophosphate synthase; Provisional	100.0
TIGR00055	226	uppS undecaprenyl diphosphate synthase. Alternate	100.0
KOG1602	271	consensus Cis-prenyltransferase [Lipid transport a	100.0
COG0020	245	UppS Undecaprenyl pyrophosphate synthase [Lipid me	99.97
PF01255	223	Prenyltransf: Putative undecaprenyl diphosphate sy	99.97
PRK10240	229	undecaprenyl pyrophosphate synthase; Provisional	99.96
PF02739	169	5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolv	86.46
PF04055	166	Radical_SAM: Radical SAM superfamily; InterPro: IP	83.52
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	82.42

>PRK14837 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4.2e-38  Score=244.17  Aligned_cols=85  Identities=39%  Similarity=0.773  Sum_probs=80.7

Q ss_pred             CCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHH
Q 045812           20 NREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKS   95 (105)
Q Consensus        20 ~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~   95 (105)
                      +.+++|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+||||||||    +||+.||+|+.++
T Consensus         2 ~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~   81 (230)
T PRK14837          2 NKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADY   81 (230)
T ss_pred             CCCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999    9999999999999


Q ss_pred             HHHHHHhhh
Q 045812           96 IKSELEGFI  104 (105)
Q Consensus        96 ~~~~~~~~~  104 (105)
                      +.+..++++
T Consensus        82 l~~~~~~~~   90 (230)
T PRK14837         82 LSSEFNFYK   90 (230)
T ss_pred             HHHHHHHHH
Confidence            998776653

>PRK14831 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=6.1e-38  Score=245.10  Aligned_cols=95  Identities=47%  Similarity=0.936  Sum_probs=87.6

Q ss_pred             hHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHH
Q 045812           10 LARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEV   85 (105)
Q Consensus        10 ~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev   85 (105)
                      .++..+...++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++||+||||+|||    +||
T Consensus         6 ~~~~~~~~~~~~~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev   85 (249)
T PRK14831          6 TKLQDLPADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEV   85 (249)
T ss_pred             CcchhhhhhcccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHH
Confidence            4555666777778999999999999999999999999999999999999999999999999999999999999    999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 045812           86 EFLMKLFEKSIKSELEGFI  104 (105)
Q Consensus        86 ~~Lm~l~~~~~~~~~~~~~  104 (105)
                      +.||+|+.+++.+..+.+.
T Consensus        86 ~~Lm~L~~~~l~~~~~~~~  104 (249)
T PRK14831         86 NFLMTLFERVLRRELEELM  104 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999998766543

>PRK14842 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.1e-37  Score=242.97  Aligned_cols=86  Identities=35%  Similarity=0.708  Sum_probs=81.4

Q ss_pred             CCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHH
Q 045812           19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEK   94 (105)
Q Consensus        19 i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~   94 (105)
                      +-.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+||||+|||    +||+.||+++.+
T Consensus         3 ~~~~~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~   82 (241)
T PRK14842          3 LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVE   82 (241)
T ss_pred             CCCCCCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHH
Confidence            4467899999999999999999999999999999999999999999999999999999999999    999999999999


Q ss_pred             HHHHHHHhhh
Q 045812           95 SIKSELEGFI  104 (105)
Q Consensus        95 ~~~~~~~~~~  104 (105)
                      ++++..+.+.
T Consensus        83 ~l~~~~~~~~   92 (241)
T PRK14842         83 FIETRLDTIH   92 (241)
T ss_pred             HHHHHHHHHH
Confidence            9998876643

>PRK14832 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.2e-37  Score=244.28  Aligned_cols=89  Identities=51%  Similarity=0.970  Sum_probs=83.8

Q ss_pred             hccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHH
Q 045812           16 AGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKL   91 (105)
Q Consensus        16 ~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l   91 (105)
                      ...+..+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+||||+|||    +||+.||++
T Consensus        10 ~~~~~~~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L   89 (253)
T PRK14832         10 PPDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLL   89 (253)
T ss_pred             cccCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHH
Confidence            4557778999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHhhh
Q 045812           92 FEKSIKSELEGFI  104 (105)
Q Consensus        92 ~~~~~~~~~~~~~  104 (105)
                      +.+++.+..+.++
T Consensus        90 ~~~~l~~~~~~~~  102 (253)
T PRK14832         90 FERLLRRELAQMH  102 (253)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998776653

>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional

Probab=100.00  E-value=1.3e-37  Score=251.07  Aligned_cols=92  Identities=33%  Similarity=0.564  Sum_probs=87.2

Q ss_pred             hHhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----H
Q 045812            8 VILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----V   83 (105)
Q Consensus         8 ~~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~   83 (105)
                      +.+.++.+.+.++.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+||||||||    +
T Consensus         3 ~~~~~~~~~~~l~~g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~   82 (322)
T PTZ00349          3 LNIIERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPE   82 (322)
T ss_pred             hHHHHHHHHHHhhcCCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHH
Confidence            456778888889999999999999999999999999999999999999999999999999999999999999999    9


Q ss_pred             HHHHHHHHHHHHHHHH
Q 045812           84 EVEFLMKLFEKSIKSE   99 (105)
Q Consensus        84 Ev~~Lm~l~~~~~~~~   99 (105)
                      ||++||+|+..++.+.
T Consensus        83 EV~~Lm~L~~~~l~~~   98 (322)
T PTZ00349         83 EIHFLFYLNLLILINE   98 (322)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998888765

>PRK14829 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.5e-37  Score=242.07  Aligned_cols=87  Identities=41%  Similarity=0.713  Sum_probs=82.2

Q ss_pred             ccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHH
Q 045812           17 GGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLF   92 (105)
Q Consensus        17 ~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~   92 (105)
                      ..++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++||+|+||+|||    +||+.||+++
T Consensus         7 ~~~~~~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~   86 (243)
T PRK14829          7 PDIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFS   86 (243)
T ss_pred             cccccCCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHH
Confidence            456778999999999999999999999999999999999999999999999999999999999999    9999999999


Q ss_pred             HHHHHHHHHhh
Q 045812           93 EKSIKSELEGF  103 (105)
Q Consensus        93 ~~~~~~~~~~~  103 (105)
                      ++++.+..+.+
T Consensus        87 ~~~l~~~~~~~   97 (243)
T PRK14829         87 RDVIHRRREQM   97 (243)
T ss_pred             HHHHHHHHHHH
Confidence            99998876554

>PRK14827 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=2.2e-37  Score=247.28  Aligned_cols=96  Identities=33%  Similarity=0.610  Sum_probs=89.2

Q ss_pred             HhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HH
Q 045812            9 ILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VE   84 (105)
Q Consensus         9 ~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~E   84 (105)
                      +.+.+.+...++.+++|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+||||||||    +|
T Consensus        52 ~~~~~~~~~~l~~~~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~E  131 (296)
T PRK14827         52 QHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEE  131 (296)
T ss_pred             CCcccccccccCCCCCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHH
Confidence            44667777888889999999999999999999999999999999999999999999999999999999999999    99


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 045812           85 VEFLMKLFEKSIKSELEGFI  104 (105)
Q Consensus        85 v~~Lm~l~~~~~~~~~~~~~  104 (105)
                      |+.||+++++++.+..+.+.
T Consensus       132 V~~Lm~L~~~~l~~~~~~~~  151 (296)
T PRK14827        132 VRFLMGFNRDVVRRRRDNLN  151 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998766543

>PRK14833 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=3e-37  Score=239.37  Aligned_cols=83  Identities=46%  Similarity=0.875  Sum_probs=79.3

Q ss_pred             CCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812           22 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK   97 (105)
Q Consensus        22 ~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~   97 (105)
                      +++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+|||    +||+.||+++.+++.
T Consensus         2 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~   81 (233)
T PRK14833          2 DNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLK   81 (233)
T ss_pred             CCCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             HHHHhhh
Q 045812           98 SELEGFI  104 (105)
Q Consensus        98 ~~~~~~~  104 (105)
                      +..+.+.
T Consensus        82 ~~~~~~~   88 (233)
T PRK14833         82 DERSTYL   88 (233)
T ss_pred             HHHHHHH
Confidence            8776643

>PRK14841 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=3.1e-37  Score=239.31  Aligned_cols=82  Identities=50%  Similarity=0.877  Sum_probs=78.4

Q ss_pred             CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812           23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS   98 (105)
Q Consensus        23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~   98 (105)
                      ++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+|||    +||+.||+++.+++.+
T Consensus         2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~   81 (233)
T PRK14841          2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR   81 (233)
T ss_pred             CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999999    9999999999999988


Q ss_pred             HHHhhh
Q 045812           99 ELEGFI  104 (105)
Q Consensus        99 ~~~~~~  104 (105)
                      ..+.++
T Consensus        82 ~~~~~~   87 (233)
T PRK14841         82 EMELLR   87 (233)
T ss_pred             HHHHHH
Confidence            766543

>PRK14840 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4.6e-37  Score=240.67  Aligned_cols=92  Identities=38%  Similarity=0.615  Sum_probs=84.4

Q ss_pred             hhhhccCCCCCCCCeEEEeecCchHHHHhcC----CCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HH
Q 045812           13 GGVAGGLNREAMPRHVAVIMDGNVRWARQRG----LPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VE   84 (105)
Q Consensus        13 ~~l~~~i~~~~~P~HIaiImDGNRRwAk~~g----l~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~E   84 (105)
                      +.-..-++.+++|+|||||||||||||+++|    ++..+||++|++++.++++||.++||++||+||||||||    +|
T Consensus         7 ~~~~~~~~~~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~E   86 (250)
T PRK14840          7 QAQENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEE   86 (250)
T ss_pred             hhhhhhcccCCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHH
Confidence            3334557789999999999999999999975    899999999999999999999999999999999999999    99


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 045812           85 VEFLMKLFEKSIKSELEGFI  104 (105)
Q Consensus        85 v~~Lm~l~~~~~~~~~~~~~  104 (105)
                      |+.||+++.+++.+.++++.
T Consensus        87 V~~Lm~L~~~~l~~~~~~~~  106 (250)
T PRK14840         87 VAELFSLFNSQLDSQLPYLH  106 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877654

>PRK14828 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=8.1e-37  Score=239.54  Aligned_cols=92  Identities=32%  Similarity=0.581  Sum_probs=87.1

Q ss_pred             HhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCch-HhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----H
Q 045812            9 ILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSS-AGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----V   83 (105)
Q Consensus         9 ~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~-~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~   83 (105)
                      .+|++.+...++.+++|+|||||||||||||+++|++.. +||++|++++.++++||.++||++||+||||||||    +
T Consensus        11 ~~~~~~~~~~~~~~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~   90 (256)
T PRK14828         11 KVYARRLLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSE   90 (256)
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHH
Confidence            466778888888889999999999999999999999998 99999999999999999999999999999999999    9


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 045812           84 EVEFLMKLFEKSIKSEL  100 (105)
Q Consensus        84 Ev~~Lm~l~~~~~~~~~  100 (105)
                      ||+.||+++++++.+.+
T Consensus        91 Ev~~Lm~L~~~~l~~~~  107 (256)
T PRK14828         91 ELNPLLDIIEDVVRQLA  107 (256)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998765

>PRK14834 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=6.1e-37  Score=239.69  Aligned_cols=87  Identities=47%  Similarity=0.807  Sum_probs=82.7

Q ss_pred             ccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHH
Q 045812           17 GGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLF   92 (105)
Q Consensus        17 ~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~   92 (105)
                      .+++++++|+||||||||||||||++|+++.+||++|++++.++++||.++||+.||+|+||+|||    +||+.||+++
T Consensus         7 ~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~   86 (249)
T PRK14834          7 DESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLL   86 (249)
T ss_pred             CCCCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHH
Confidence            456888999999999999999999999999999999999999999999999999999999999999    9999999999


Q ss_pred             HHHHHHHHHhh
Q 045812           93 EKSIKSELEGF  103 (105)
Q Consensus        93 ~~~~~~~~~~~  103 (105)
                      ..++.+..+.+
T Consensus        87 ~~~l~~~~~~~   97 (249)
T PRK14834         87 RLFIRRDLAEL   97 (249)
T ss_pred             HHHHHHHHHHH
Confidence            99999876654

>PRK14835 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=8.3e-37  Score=241.78  Aligned_cols=93  Identities=37%  Similarity=0.622  Sum_probs=87.9

Q ss_pred             HhHHhhhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HH
Q 045812            9 ILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VE   84 (105)
Q Consensus         9 ~~~~~~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~E   84 (105)
                      .+|++.+...+..+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+|||    +|
T Consensus        26 ~~~~~~l~~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~E  105 (275)
T PRK14835         26 WGYEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAE  105 (275)
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHH
Confidence            34778888888888999999999999999999999999999999999999999999999999999999999999    99


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 045812           85 VEFLMKLFEKSIKSELE  101 (105)
Q Consensus        85 v~~Lm~l~~~~~~~~~~  101 (105)
                      |++||+++.+++.+.++
T Consensus       106 V~~Lm~L~~~~l~~~~~  122 (275)
T PRK14835        106 VETLMNLFEREARRMAV  122 (275)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999988654

>PRK14838 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.1e-36  Score=237.52  Aligned_cols=82  Identities=45%  Similarity=0.801  Sum_probs=78.2

Q ss_pred             cCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHH
Q 045812           18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFE   93 (105)
Q Consensus        18 ~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~   93 (105)
                      .+..+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+|||    +||+.||+++.
T Consensus         4 ~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~   83 (242)
T PRK14838          4 QIDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLL   83 (242)
T ss_pred             cccCCCCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999    99999999999


Q ss_pred             HHHHHH
Q 045812           94 KSIKSE   99 (105)
Q Consensus        94 ~~~~~~   99 (105)
                      +++.+.
T Consensus        84 ~~l~~~   89 (242)
T PRK14838         84 DSIEEE   89 (242)
T ss_pred             HHHHHH
Confidence            999763

>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates

Probab=100.00  E-value=1.3e-36  Score=234.16  Aligned_cols=80  Identities=49%  Similarity=0.936  Sum_probs=77.4

Q ss_pred             CCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHHH
Q 045812           25 PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSEL  100 (105)
Q Consensus        25 P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~~  100 (105)
                      |+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+||||||||    +||+.||++++.++++.+
T Consensus         1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~   80 (221)
T cd00475           1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL   80 (221)
T ss_pred             CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999    999999999999999987


Q ss_pred             Hhhh
Q 045812          101 EGFI  104 (105)
Q Consensus       101 ~~~~  104 (105)
                      +.+.
T Consensus        81 ~~~~   84 (221)
T cd00475          81 KELE   84 (221)
T ss_pred             HHHH
Confidence            7643

A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.

>PRK14836 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=8.8e-37  Score=239.12  Aligned_cols=90  Identities=47%  Similarity=0.855  Sum_probs=84.4

Q ss_pred             hhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHH
Q 045812           15 VAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMK   90 (105)
Q Consensus        15 l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~   90 (105)
                      +...++.+++|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+|+||+|||    +||+.||+
T Consensus         5 ~~~~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~   84 (253)
T PRK14836          5 IQMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALME   84 (253)
T ss_pred             cccccccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHH
Confidence            44567788999999999999999999999999999999999999999999999999999999999999    99999999


Q ss_pred             HHHHHHHHHHHhhh
Q 045812           91 LFEKSIKSELEGFI  104 (105)
Q Consensus        91 l~~~~~~~~~~~~~  104 (105)
                      ++..++.+..+++.
T Consensus        85 l~~~~l~~~~~~~~   98 (253)
T PRK14836         85 LFLKALDREVDKLH   98 (253)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998776653

>PRK14839 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=3.7e-36  Score=234.52  Aligned_cols=82  Identities=49%  Similarity=0.793  Sum_probs=78.1

Q ss_pred             CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812           23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS   98 (105)
Q Consensus        23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~   98 (105)
                      .-|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||||||    +||+.||+|+.+++.+
T Consensus         8 ~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~   87 (239)
T PRK14839          8 RSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRN   87 (239)
T ss_pred             CCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHH
Confidence            459999999999999999999999999999999999999999999999999999999999    9999999999999998


Q ss_pred             HHHhhh
Q 045812           99 ELEGFI  104 (105)
Q Consensus        99 ~~~~~~  104 (105)
                      .++.+.
T Consensus        88 ~~~~~~   93 (239)
T PRK14839         88 ETERLA   93 (239)
T ss_pred             HHHHHH
Confidence            776643

>PRK14830 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=5.9e-36  Score=234.11  Aligned_cols=87  Identities=43%  Similarity=0.794  Sum_probs=82.3

Q ss_pred             ccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHH
Q 045812           17 GGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLF   92 (105)
Q Consensus        17 ~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~   92 (105)
                      ..++.+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||+|||    +||+.||+++
T Consensus        15 ~~~~~~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~   94 (251)
T PRK14830         15 EELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLP   94 (251)
T ss_pred             cccCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHH
Confidence            446678999999999999999999999999999999999999999999999999999999999999    9999999999


Q ss_pred             HHHHHHHHHhh
Q 045812           93 EKSIKSELEGF  103 (105)
Q Consensus        93 ~~~~~~~~~~~  103 (105)
                      ..++.+.++.+
T Consensus        95 ~~~l~~~~~~~  105 (251)
T PRK14830         95 VEFLDKFVPEL  105 (251)
T ss_pred             HHHHHHHHHHH
Confidence            99999877654

>TIGR00055 uppS undecaprenyl diphosphate synthase

Probab=100.00  E-value=7e-36  Score=231.10  Aligned_cols=79  Identities=53%  Similarity=1.015  Sum_probs=76.0

Q ss_pred             CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHHHH
Q 045812           26 RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSELE  101 (105)
Q Consensus        26 ~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~~~  101 (105)
                      +||||||||||||||++|+++.+||++|+++++++++||.++||++||+||||||||    +||++||+|+.+++.+..+
T Consensus         1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~   80 (226)
T TIGR00055         1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK   80 (226)
T ss_pred             CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999    9999999999999998776


Q ss_pred             hhh
Q 045812          102 GFI  104 (105)
Q Consensus       102 ~~~  104 (105)
                      +++
T Consensus        81 ~~~   83 (226)
T TIGR00055        81 ELH   83 (226)
T ss_pred             HHH
Confidence            654

Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.

>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]

Probab=100.00  E-value=3.9e-35  Score=231.36  Aligned_cols=85  Identities=54%  Similarity=0.831  Sum_probs=80.7

Q ss_pred             cCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHH
Q 045812           18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFE   93 (105)
Q Consensus        18 ~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~   93 (105)
                      .+..+++|+||||||||||||||++|++..+||++|+.++.++++||.++||++||+||||+|||    +||+.||+|+.
T Consensus        30 ~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~  109 (271)
T KOG1602|consen   30 LLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLAL  109 (271)
T ss_pred             HHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHH
Confidence            45669999999999999999999999999999999999999999999999999999999999999    99999999999


Q ss_pred             HHHHHHHHh
Q 045812           94 KSIKSELEG  102 (105)
Q Consensus        94 ~~~~~~~~~  102 (105)
                      +.+++..+.
T Consensus       110 ~k~~~~~~~  118 (271)
T KOG1602|consen  110 EKIERLLEQ  118 (271)
T ss_pred             HHHHHHHHH
Confidence            999986543

>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]

Probab=99.97  E-value=3e-31  Score=207.32  Aligned_cols=82  Identities=56%  Similarity=1.068  Sum_probs=79.1

Q ss_pred             CCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHH
Q 045812           23 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKS   98 (105)
Q Consensus        23 ~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~   98 (105)
                      .+|+|||||||||||||+++|+++..||+.|+++++++++||.++||+.+|+|+||||||    +||++||+++.+++.+
T Consensus        15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~   94 (245)
T COG0020          15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE   94 (245)
T ss_pred             ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999999999    9999999999999999


Q ss_pred             HHHhhh
Q 045812           99 ELEGFI  104 (105)
Q Consensus        99 ~~~~~~  104 (105)
                      ..+.++
T Consensus        95 ~~~~l~  100 (245)
T COG0020          95 ELKKLH  100 (245)
T ss_pred             HHHHHh
Confidence            886554

>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2

Probab=99.97  E-value=9.6e-31  Score=200.10  Aligned_cols=73  Identities=53%  Similarity=1.004  Sum_probs=68.1

Q ss_pred             eecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHHHHhh
Q 045812           31 IMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSELEGF  103 (105)
Q Consensus        31 ImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~~~~~  103 (105)
                      |||||||||+++|++..+||++|++++.++++||.++||++||+||||||||    +||+.||+++.+++.+.++..
T Consensus         1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~   77 (223)
T PF01255_consen    1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDEL   77 (223)
T ss_dssp             EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence            8999999999999999999999999999999999999999999999999999    999999999999999988764

5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....

>PRK10240 undecaprenyl pyrophosphate synthase; Provisional

Probab=99.96  E-value=1e-29  Score=196.92  Aligned_cols=73  Identities=42%  Similarity=0.763  Sum_probs=70.2

Q ss_pred             ecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHHHHHHhhh
Q 045812           32 MDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIKSELEGFI  104 (105)
Q Consensus        32 mDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~~~~~~~~  104 (105)
                      ||||||||+++|++..+||++|++++.++++||.++||++||+||||+|||    +||+.||+++.+++.+.++.+.
T Consensus         1 mDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~   77 (229)
T PRK10240          1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLH   77 (229)
T ss_pred             CCCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999    9999999999999998776653

>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities

Probab=86.46  E-value=4  Score=30.07  Aligned_cols=69  Identities=22%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             CCCeEEEeecCchHHHHhcCCCchHhHHHHHHH-----HHHHHHHHHhcCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Q 045812           24 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRS-----LRELVELCCRWGVKVLTVFAFSYDNWVEVEFLMKLFEKSIKS   98 (105)
Q Consensus        24 ~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~-----l~~v~~~c~~~GI~~vT~yafSteN~~Ev~~Lm~l~~~~~~~   98 (105)
                      -|.|+++..|+-+..=|+.-.|...+++.....     +..+-+++..+||+.+..=.+      |=|.++..+.....+
T Consensus        50 ~p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~g~------EADDvIatla~~~~~  123 (169)
T PF02739_consen   50 KPDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEVPGY------EADDVIATLAKKASE  123 (169)
T ss_dssp             TEEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEETTB-------HHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecCCCC------cHHHHHHHHHhhhcc
Confidence            489999999998875566667888888886543     455777888899987765433      556666655555443

The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation

Probab=83.52  E-value=5.5  Score=26.36  Aligned_cols=40  Identities=15%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHhcCCC--EEEEEeeccCCHHHHHHHHHHH
Q 045812           53 GVRSLRELVELCCRWGVK--VLTVFAFSYDNWVEVEFLMKLF   92 (105)
Q Consensus        53 G~~~l~~v~~~c~~~GI~--~vT~yafSteN~~Ev~~Lm~l~   92 (105)
                      ..+.+.+.++.+.+.|++  ...++.+..+|.+|+..+.+++
T Consensus       125 ~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~i  166 (166)
T PF04055_consen  125 SFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRFI  166 (166)
T ss_dssp             HHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCcC
Confidence            467888999999999998  4555556569998888887754

Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=82.42  E-value=9.8  Score=26.58  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEEee
Q 045812           50 HEAGVRSLRELVELCCRWGVKVLTVFAF   77 (105)
Q Consensus        50 h~~G~~~l~~v~~~c~~~GI~~vT~yaf   77 (105)
                      .....+.+.+.++.|.++|++.+++...
T Consensus        66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g   93 (213)
T PF01261_consen   66 REEALEYLKKAIDLAKRLGAKYIVVHSG   93 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred             hHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence            6777889999999999999999999966

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
1f75_A	249	Crystal Structure Of Undecaprenyl Diphosphate Synth		5e-17
4h8e_A	256	Structure Of S. Aureus Undecaprenyl Diphosphate Syn		7e-16
2d2r_A	245	Crystal Structure Of Helicobacter Pylori Undecapren		2e-14
3ugs_B	225	Crystal Structure Of A Probable Undecaprenyl Diphos		2e-14
1ueh_A	253	E. Coli Undecaprenyl Pyrophosphate Synthase In Comp		2e-14
1x08_A	253	Crystal Structure Of D26a Mutant Upps In Complex Wi		2e-13
1jp3_A	253	Structure Of E.Coli Undecaprenyl Pyrophosphate Synt		7e-13
2vg2_A	284	Rv2361 With Ipp Length = 284		1e-10
2vg1_A	228	Rv1086 E,E-Farnesyl Diphosphate Complex Length = 22		5e-07
2vfw_A	227	Rv1086 Native Length = 227		5e-07

>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase From Micrococcus Luteus B-P 26 Length = 249

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 16/104 (15%)
Query: 17  GGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFA 76
             +N   +P+H+A+IMDGN RWA+Q+ +P   GH  G++++R++       GVK LT++A
Sbjct: 13  NNINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYA 72
Query: 77  FSYDNWV----EVEFLMK------------LFEKSIKSELEGFI 104
           FS +NW     EV +LMK            L EK++K E  GFI
Sbjct: 73  FSTENWSRPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFI 116

>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase In Complex With Fpp And Sulfate Length = 256

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 19/117 (16%)
Query: 3   LNRNNVILARGGVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVE 62
           +N+ N I         L+   +P H+A+IMDGN RWA++R +P   GH  G+++++++  
Sbjct: 6   INKKNTI---NNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITR 62
Query: 63  LCCRWGVKVLTVFAFSYDNWVEVE----------------FLMKLFEKSIKSELEGF 103
           +    GVK LT++AFS +NW   E                FL +L EK++K E  GF
Sbjct: 63  IASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGF 119

>pdb|2D2R|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl Pyrophosphate Synthase Length = 245

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 26  RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW--- 82
           +H+A+IMDGN RWA+ +    + GH+ GV++L+++   C    ++ LT++AFS +NW   
Sbjct: 17  KHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRP 76
Query: 83  -VEVEFLMKLFEKSIKSELEGFI 104
             EV+FLMK+ +K +K E   ++
Sbjct: 77  KSEVDFLMKMLKKYLKDERSTYL 99

>pdb|3UGS|B Chain B, Crystal Structure Of A Probable Undecaprenyl Diphosphate Synthase (Upps) From Campylobacter Jejuni Length = 225

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 26  RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV-- 83
           +H+AV+MDGN RWAR +G  +  G+  GV+++++L+E+C    +  L++FAFS +NW   
Sbjct: 8   KHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRP 67
Query: 84  --EVEFLMKLFEKSIKSELEGF 103
             E++F+ +L ++ +   LE F
Sbjct: 68  KDEIDFIFELLDRCLDEALEKF 89

>pdb|1UEH|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex With Triton X- 100, Magnesium And Sulfate Length = 253

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 26  RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW--- 82
           RHVA+IMDGN RWA+++G   + GH+AG +S+R  V      G++ LT++AFS +NW   
Sbjct: 19  RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 83  -VEVEFLMKLFEKSIKSELEGFIR 105
             EV  LM+LF  ++ SE++   R
Sbjct: 79  AQEVSALMELFVWALDSEVKSLHR 102

>pdb|1X08|A Chain A, Crystal Structure Of D26a Mutant Upps In Complex With Mg, Ipp And Fspp Length = 253

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 26  RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW--- 82
           RHVA+IM GN RWA+++G   + GH+AG +S+R  V      G++ LT++AFS +NW   
Sbjct: 19  RHVAIIMAGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 83  -VEVEFLMKLFEKSIKSELEGFIR 105
             EV  LM+LF  ++ SE++   R
Sbjct: 79  AQEVSALMELFVWALDSEVKSLHR 102

>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase Length = 253

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 26  RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW--- 82
           RHVA+I DGN RWA+++G   + GH+AG +S+R  V      G++ LT++AFS +NW   
Sbjct: 19  RHVAIIXDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 83  -VEVEFLMKLFEKSIKSELEGFIR 105
             EV  L +LF  ++ SE++   R
Sbjct: 79  AQEVSALXELFVWALDSEVKSLHR 102

>pdb|2VG2|A Chain A, Rv2361 With Ipp Length = 284

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 14  GVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLT 73
             A  +  + +P HVA++MDGN RWA QRGL  + GH+ G   + ++       G+K L+
Sbjct: 45  AAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLS 104
Query: 74  VFAFSYDNWV----EVEFLM 89
           ++AFS +NW     EV FLM
Sbjct: 105 LYAFSTENWKRSPEEVRFLM 124

>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex Length = 228

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPS-SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81
          +PRH+AV+ DGN RWAR  G    S G+  G   + E++  C   G+++ TV+  S +N
Sbjct: 3  LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTEN 61

>pdb|2VFW|A Chain A, Rv1086 Native Length = 227

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 24 MPRHVAVIMDGNVRWARQRGLPS-SAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDN 81
          +PRH+AV+ DGN RWAR  G    S G+  G   + E++  C   G+++ TV+  S +N
Sbjct: 2  LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTEN 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
3qas_B	253	Undecaprenyl pyrophosphate synthase; alpha-helix,	8e-43
1f75_A	249	Undecaprenyl pyrophosphate synthetase; parallel be	1e-42
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	7e-42
2d2r_A	245	Undecaprenyl pyrophosphate synthase; prenyltransfe	6e-41
3ugs_B	225	Undecaprenyl pyrophosphate synthase; niaid, csgid,	8e-41
2vg0_A	227	Short-chain Z-isoprenyl diphosphate synthetase; pe	4e-39

>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Length = 253

 Score =  139 bits (352), Expect = 8e-43
 Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 4/86 (4%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW- 82
             RHVA+IMDGN RWA+++G   + GH+AG +S+R  V      G++ LT++AFS +NW 
Sbjct: 17  GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWN 76

Query: 83  ---VEVEFLMKLFEKSIKSELEGFIR 105
               EV  LM+LF  ++ SE++   R
Sbjct: 77  RPAQEVSALMELFVWALDSEVKSLHR 102

>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Length = 249

 Score =  138 bits (350), Expect = 1e-42
 Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           +N   +P+H+A+IMDGN RWA+Q+ +P   GH  G++++R++       GVK LT++AFS
Sbjct: 15  INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 74

Query: 79  YDNW----VEVEFLMKLFEKSIKSELEGFIR 105
            +NW     EV +LMKL    + + L   I 
Sbjct: 75  TENWSRPKDEVNYLMKLPGDFLNTFLPELIE 105

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score =  137 bits (348), Expect = 7e-42
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           +  + +P HVA++MDGN RWA QRGL  + GH+ G   + ++       G+K L+++AFS
Sbjct: 50  IPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFS 109

Query: 79  YDNW----VEVEFLMKLFEKSIKSELEGFIR 105
            +NW     EV FLM      ++   +   +
Sbjct: 110 TENWKRSPEEVRFLMGFNRDVVRRRRDTLKK 140

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Length = 245

 Score =  134 bits (339), Expect = 6e-41
 Identities = 32/91 (35%), Positives = 57/91 (62%), Gaps = 4/91 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
              ++  +H+A+IMDGN RWA+ +    + GH+ GV++L+++   C    ++ LT++AFS
Sbjct: 10  EKLDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFS 69

Query: 79  YDNW----VEVEFLMKLFEKSIKSELEGFIR 105
            +NW     EV+FLMK+ +K +K E   ++ 
Sbjct: 70  TENWKRPKSEVDFLMKMLKKYLKDERSTYLD 100

>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} Length = 225

 Score =  133 bits (337), Expect = 8e-41
 Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 4/85 (4%)

Query: 25  PRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW-- 82
            +H+AV+MDGN RWAR +G  +  G+  GV+++++L+E+C    +  L++FAFS +NW  
Sbjct: 7   LKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKR 66

Query: 83  --VEVEFLMKLFEKSIKSELEGFIR 105
              E++F+ +L ++ +   LE F +
Sbjct: 67  PKDEIDFIFELLDRCLDEALEKFEK 91

>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Length = 227

 Score =  129 bits (326), Expect = 4e-39
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 24  MPRHVAVIMDGNVRWARQRGLP-SSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW 82
           +PRH+AV+ DGN RWAR  G    S G+  G   + E++  C   G+++ TV+  S +N 
Sbjct: 2   LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENL 61

Query: 83  ----VEVEFLMKLFEKSIKSELE 101
                E+  L+++    ++    
Sbjct: 62  QRDPDELAALIEIITDVVEEICA 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
4h8e_A	256	Undecaprenyl pyrophosphate synthase; alpha-helix,	100.0
3ugs_B	225	Undecaprenyl pyrophosphate synthase; niaid, csgid,	100.0
3sgv_B	253	Undecaprenyl pyrophosphate synthase; alpha/beta, t	100.0
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	100.0
2d2r_A	245	Undecaprenyl pyrophosphate synthase; prenyltransfe	100.0
1f75_A	249	Undecaprenyl pyrophosphate synthetase; parallel be	100.0
2vg0_A	227	Short-chain Z-isoprenyl diphosphate synthetase; pe	100.0
3qas_B	253	Undecaprenyl pyrophosphate synthase; alpha-helix,	100.0
2ge3_A	170	Probable acetyltransferase; structural GEN PSI, pr	80.84
3pzj_A	209	Probable acetyltransferases; MCSG, PSI-2, structur	80.58
2j8m_A	172	Acetyltransferase PA4866 from P. aeruginosa; GCN5	80.12

>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=9.1e-39  Score=249.99  Aligned_cols=89  Identities=38%  Similarity=0.760  Sum_probs=82.8

Q ss_pred             hccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHH
Q 045812           16 AGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKL   91 (105)
Q Consensus        16 ~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l   91 (105)
                      ..+++.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+||||||||    +||++||++
T Consensus        16 ~~~~~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L   95 (256)
T 4h8e_A           16 NEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNL   95 (256)
T ss_dssp             ---CCTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHH
T ss_pred             HHhccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHH
Confidence            3467888999999999999999999999999999999999999999999999999999999999999    999999999


Q ss_pred             HHHHHHHHHHhhh
Q 045812           92 FEKSIKSELEGFI  104 (105)
Q Consensus        92 ~~~~~~~~~~~~~  104 (105)
                      +.+++++.+++++
T Consensus        96 ~~~~l~~~~~~l~  108 (256)
T 4h8e_A           96 PVNFLKTFLPELI  108 (256)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877653

>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0

Probab=100.00  E-value=3e-38  Score=243.33  Aligned_cols=83  Identities=37%  Similarity=0.794  Sum_probs=65.8

Q ss_pred             CCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812           22 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK   97 (105)
Q Consensus        22 ~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~   97 (105)
                      ..+|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+||||||||    +||++||+|+.++++
T Consensus         4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~   83 (225)
T 3ugs_B            4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD   83 (225)
T ss_dssp             CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             HHHHhhh
Q 045812           98 SELEGFI  104 (105)
Q Consensus        98 ~~~~~~~  104 (105)
                      +.+++++
T Consensus        84 ~~~~~l~   90 (225)
T 3ugs_B           84 EALEKFE   90 (225)
T ss_dssp             HHHHHST
T ss_pred             HHHHHHH
Confidence            9877654

>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...

Probab=100.00  E-value=3.2e-38  Score=246.58  Aligned_cols=84  Identities=43%  Similarity=0.724  Sum_probs=73.3

Q ss_pred             CCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHH
Q 045812           21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSI   96 (105)
Q Consensus        21 ~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~   96 (105)
                      +.++|+||||||||||||||++|+++.+||++|+++++++++||.++||++||+||||||||    +||++||+++.+++
T Consensus        14 ~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l   93 (253)
T 3sgv_B           14 PAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWAL   93 (253)
T ss_dssp             CTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTTH
T ss_pred             CCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             HHHHHhhh
Q 045812           97 KSELEGFI  104 (105)
Q Consensus        97 ~~~~~~~~  104 (105)
                      .+.+++++
T Consensus        94 ~~~~~~l~  101 (253)
T 3sgv_B           94 DSEVKSLH  101 (253)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877653

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A

Probab=100.00  E-value=3.6e-36  Score=237.97  Aligned_cols=90  Identities=36%  Similarity=0.671  Sum_probs=84.7

Q ss_pred             hhhccCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHH
Q 045812           14 GVAGGLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLM   89 (105)
Q Consensus        14 ~l~~~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm   89 (105)
                      .+...++.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++||+|+||||||    +||+.||
T Consensus        45 ~~~~~~~~~~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm  124 (284)
T 2vg3_A           45 AAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM  124 (284)
T ss_dssp             CCCCCCCTTTSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHH
T ss_pred             hhhhhcccCCCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH
Confidence            456667778899999999999999999999999999999999999999999999999999999999999    9999999


Q ss_pred             HHHHHHHHHHHHhh
Q 045812           90 KLFEKSIKSELEGF  103 (105)
Q Consensus        90 ~l~~~~~~~~~~~~  103 (105)
                      +++.+++++.++++
T Consensus       125 ~L~~~~l~~~~~~l  138 (284)
T 2vg3_A          125 GFNRDVVRRRRDTL  138 (284)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877664

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A

Probab=100.00  E-value=2.8e-36  Score=234.15  Aligned_cols=82  Identities=39%  Similarity=0.811  Sum_probs=72.7

Q ss_pred             CCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812           22 EAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK   97 (105)
Q Consensus        22 ~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~   97 (105)
                      +++|+||||||||||||||++|+++..||++|++++.++++||.++||++||+|+||||||    +||+.||+++.+++.
T Consensus        13 ~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~   92 (245)
T 2d2r_A           13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK   92 (245)
T ss_dssp             -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             HHHHhh
Q 045812           98 SELEGF  103 (105)
Q Consensus        98 ~~~~~~  103 (105)
                      +.++++
T Consensus        93 ~~~~~l   98 (245)
T 2d2r_A           93 DERSTY   98 (245)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987765

>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1

Probab=100.00  E-value=2.7e-36  Score=234.58  Aligned_cols=86  Identities=41%  Similarity=0.783  Sum_probs=73.3

Q ss_pred             cCCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHH
Q 045812           18 GLNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFE   93 (105)
Q Consensus        18 ~i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~   93 (105)
                      .++.+++|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+|+||||||    +||++||+++.
T Consensus        14 ~~~~~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~   93 (249)
T 1f75_A           14 NINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPG   93 (249)
T ss_dssp             CCCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHH
T ss_pred             ccccCCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHH
Confidence            34557899999999999999999999999999999999999999999999999999999999999    99999999999


Q ss_pred             HHHHHHHHhh
Q 045812           94 KSIKSELEGF  103 (105)
Q Consensus        94 ~~~~~~~~~~  103 (105)
                      +++.+.++++
T Consensus        94 ~~l~~~~~~l  103 (249)
T 1f75_A           94 DFLNTFLPEL  103 (249)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999877664

>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*

Probab=100.00  E-value=9.7e-36  Score=228.45  Aligned_cols=78  Identities=32%  Similarity=0.596  Sum_probs=76.0

Q ss_pred             CCCCeEEEeecCchHHHHhcC-CCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHHH
Q 045812           23 AMPRHVAVIMDGNVRWARQRG-LPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSIK   97 (105)
Q Consensus        23 ~~P~HIaiImDGNRRwAk~~g-l~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~~   97 (105)
                      ++|+||||||||||||||++| +++..||++|++++.++++||.++||++||+|+||||||    +||+.||+++.+++.
T Consensus         1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~   80 (227)
T 2vg0_A            1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE   80 (227)
T ss_dssp             CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999999 999999999999999999999999999999999999999    999999999999999


Q ss_pred             HHH
Q 045812           98 SEL  100 (105)
Q Consensus        98 ~~~  100 (105)
                      +.+
T Consensus        81 ~~~   83 (227)
T 2vg0_A           81 EIC   83 (227)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            865

>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*

Probab=100.00  E-value=1e-35  Score=231.99  Aligned_cols=88  Identities=44%  Similarity=0.762  Sum_probs=64.8

Q ss_pred             hccCCCCCCC----CeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHH
Q 045812           16 AGGLNREAMP----RHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEF   87 (105)
Q Consensus        16 ~~~i~~~~~P----~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~   87 (105)
                      ...++.+++|    +||||||||||||||++|+++..||++|++++.++++||.++||++||+|+||||||    +||++
T Consensus         5 ~~~l~~~~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~   84 (253)
T 3qas_B            5 ATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA   84 (253)
T ss_dssp             --------CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC------------
T ss_pred             ccccccCCCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHH
Confidence            3456667899    999999999999999999999999999999999999999999999999999999999    99999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 045812           88 LMKLFEKSIKSELEGF  103 (105)
Q Consensus        88 Lm~l~~~~~~~~~~~~  103 (105)
                      ||+++.+++.+.++++
T Consensus        85 Lm~l~~~~l~~~~~~l  100 (253)
T 3qas_B           85 LMELFVWALDSEVKSL  100 (253)
T ss_dssp             -----CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999877664

>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1

Probab=80.84  E-value=1.4  Score=28.43  Aligned_cols=36  Identities=17%  Similarity=0.292  Sum_probs=30.6

Q ss_pred             chHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812           46 SSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW   82 (105)
Q Consensus        46 ~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~   82 (105)
                      ...|.--|.+-+..++++|.+.|++.|++.++ .+|-
T Consensus        96 ~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~-~~N~  131 (170)
T 2ge3_A           96 AYRNKGLGARLMRRTLDAAHEFGLHRIELSVH-ADNA  131 (170)
T ss_dssp             GGTTSSHHHHHHHHHHHHHHHHTCCEEEEEEE-TTCH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHCCceEEEEEEE-cCCH
Confidence            34567779999999999999999999999998 5664

>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}

Probab=80.58  E-value=2.3  Score=28.78  Aligned_cols=37  Identities=11%  Similarity=-0.001  Sum_probs=32.1

Q ss_pred             CchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812           45 PSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW   82 (105)
Q Consensus        45 ~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~   82 (105)
                      +...|.-.|.+.+..++++|.+.|++.|++.++ .+|-
T Consensus       129 ~~~~g~Gig~~ll~~l~~~a~~~g~~~i~l~v~-~~N~  165 (209)
T 3pzj_A          129 PALRRTRLATEAVFLLLKTAFELGYRRCEWRCD-SRNA  165 (209)
T ss_dssp             TTTTTSHHHHHHHHHHHHHHHHTTCSEEEEEEE-TTCH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHcCCcEEEEeec-CCCH
Confidence            445688889999999999999999999999998 5675

>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A

Probab=80.12  E-value=1.7  Score=28.22  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=30.6

Q ss_pred             chHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812           46 SSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW   82 (105)
Q Consensus        46 ~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~   82 (105)
                      ...|.--|.+-+..++++|.+.|++.+.++++ .+|-
T Consensus        93 ~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~-~~N~  128 (172)
T 2j8m_A           93 DQRGKGLGVQLLQALIERARAQGLHVMVAAIE-SGNA  128 (172)
T ss_dssp             TCTTSSHHHHHHHHHHHHHHHTTCCEEEEEEE-TTCH
T ss_pred             hhcCCCHHHHHHHHHHHHHHHCCccEEEEEEc-CCCH
Confidence            34577779999999999999999999999998 4564

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1f75a_	229	c.101.1.1 (A:) Undecaprenyl diphosphate synthase {	4e-25
d1ueha_	228	c.101.1.1 (A:) Undecaprenyl diphosphate synthase {	1e-23

>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Micrococcus luteus [TaxId: 1270]

 Score = 92.2 bits (228), Expect = 4e-25
 Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 19  LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFS 78
           +N   +P+H+A+IMDGN RWA+Q+ +P   GH  G++++R++       GVK LT++AFS
Sbjct: 2   INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 61

Query: 79  YDN----WVEVEFLMKLFEKSIKSELEGFIR 105
            +N      EV +LMKL    + + L   I 
Sbjct: 62  TENWSRPKDEVNYLMKLPGDFLNTFLPELIE 92

>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

 Score = 88.3 bits (218), Expect = 1e-23
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query: 24  MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWV 83
             RHVA+IMDGN RWA+++G   + GH+AG +S+R  V      G++ LT++AFS +NW 
Sbjct: 5   GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWN 64

Query: 84  EVEFLMKLFEKSIKSELEGFIR 105
                +    +     L+  ++
Sbjct: 65  RPAQEVSALMELFVWALDSEVK 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1f75a_	229	Undecaprenyl diphosphate synthase {Micrococcus lut	100.0
d1ueha_	228	Undecaprenyl diphosphate synthase {Escherichia col	100.0
d1yr0a1	163	Phosphinothricin acetyltransferase {Agrobacterium	81.04

>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]}

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Micrococcus luteus [TaxId: 1270]

Probab=100.00  E-value=5.9e-38  Score=239.20  Aligned_cols=86  Identities=42%  Similarity=0.797  Sum_probs=74.6

Q ss_pred             CCCCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHH
Q 045812           19 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEK   94 (105)
Q Consensus        19 i~~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~   94 (105)
                      ++.+++|+|||||||||||||+++|+++.+||++|++++.++++||.++||++||+||||||||    +||+.||+++..
T Consensus         2 i~~~~lP~HvAiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafSteN~~R~~~Ev~~Lm~l~~~   81 (229)
T d1f75a_           2 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGD   81 (229)
T ss_dssp             CCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHH
T ss_pred             CCccCCCCeEEEeccCcHHHHHHCCCChhHHHHHHHHHHHHHHHHHHhcCCceEEEeeehhhhcccchHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999999999    999999999999


Q ss_pred             HHHHHHHhhh
Q 045812           95 SIKSELEGFI  104 (105)
Q Consensus        95 ~~~~~~~~~~  104 (105)
                      ++++.+++++
T Consensus        82 ~l~~~~~~~~   91 (229)
T d1f75a_          82 FLNTFLPELI   91 (229)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhhhhh
Confidence            9999887654

>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-37  Score=234.46  Aligned_cols=84  Identities=43%  Similarity=0.724  Sum_probs=69.4

Q ss_pred             CCCCCCeEEEeecCchHHHHhcCCCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH----HHHHHHHHHHHHHH
Q 045812           21 REAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW----VEVEFLMKLFEKSI   96 (105)
Q Consensus        21 ~~~~P~HIaiImDGNRRwAk~~gl~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~----~Ev~~Lm~l~~~~~   96 (105)
                      +.+.|+|||||||||||||+++|++..+||++|++++.++++||.++||++||+||||||||    +||+.||+++.+++
T Consensus         2 p~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~l   81 (228)
T d1ueha_           2 PAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWAL   81 (228)
T ss_dssp             CTTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHHH
T ss_pred             CCCCCCEEEEeccCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             HHHHHhhh
Q 045812           97 KSELEGFI  104 (105)
Q Consensus        97 ~~~~~~~~  104 (105)
                      .+..+++.
T Consensus        82 ~~~~~~~~   89 (228)
T d1ueha_          82 DSEVKSLH   89 (228)
T ss_dssp             HHTHHHHH
T ss_pred             HHhHHHHH
Confidence            88766543

>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Phosphinothricin acetyltransferase
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.04  E-value=0.63  Score=29.14  Aligned_cols=38  Identities=24%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCchHhHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCCH
Q 045812           44 LPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNW   82 (105)
Q Consensus        44 l~~~~Gh~~G~~~l~~v~~~c~~~GI~~vT~yafSteN~   82 (105)
                      .|...|+.-|..-+..+++||.+.|++.+.+++++. |-
T Consensus        89 ~p~~rg~Glg~~ll~~~~~~a~~~g~~~l~~~v~~~-N~  126 (163)
T d1yr0a1          89 HKDARGHGIGKRLMQALIDHAGGNDVHVLIAAIEAE-NT  126 (163)
T ss_dssp             CTTSTTSSHHHHHHHHHHHHHHTTTCCEEEEEEETT-CH
T ss_pred             eecccCCCCceeeeecccccccccccceEEEEEecC-CH
Confidence            344567778999999999999999999999999854 64