Citrus Sinensis ID: 045855

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGGLMVIYQPQVSKVLS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccHHHHHHHHHccccccccccccHHHHEEEEccccHHHHHHHHcccHHHHHHHcccccccccccccccccEEcccHHHHcc
Coil and Loop (DISEMBL)
MALKHVFFILALTCLIMANIanatskndplnnnmklgydhatrleasgglmnqvdigsdcyraidiityncwpamLTFLGFTAeegnmlrgycdasfapspgglmviyqpqvskvls
Flexible Loop (DISEMBL)
MALKHVFFILALTCLIMANIANatskndplnnNMKLGYDHATRLEASGGLMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGGLMVIYQpqvskvls
Low Complexity Region (SEG)
MALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGGLMVIYQPQVSKVLS
Disordered region (IsUnstruct)
***KHVFFILALTCLIMANIANATS******NNMKLGYDHATRLEASGGLMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGGLMVIYQ********
Disordered Region (DISOPRED)
***KHVFFILALTCLIMA*****************LGYDHATRLEASGGLMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCD*************YQPQVSKV**
Disordered Region (DISEMBL)
MALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGGLMVIYQPQVSKVLS
Disordered Region (DISPRO)
*ALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGGLMVI**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGGLMVIYQPQVSKVLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q9T039	127	Egg cell-secreted protein	yes	no	0.820	0.755	0.356	6e-12
Q9SJ23	125	Egg cell-secreted protein	no	no	0.435	0.408	0.518	8e-10
Q9SJ24	125	Egg cell-secreted protein	no	no	0.393	0.368	0.521	8e-10
Q9SRD8	158	Egg cell-secreted protein	no	no	0.393	0.291	0.521	8e-08
Q9FGG1	155	Egg cell-secreted protein	no	no	0.470	0.354	0.383	3e-05

>sp|Q9T039|EC14_ARATH Egg cell-secreted protein 1.4 OS=Arabidopsis thaliana GN=EC1.4 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 33/129 (25%)

Query: 1   MALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMN-------- 52
           MA    F    +T LI+      + ++ P  ++  +    A RL+ SGGLM         
Sbjct: 1   MASNTTFLFSTVTLLIILLNTTVSGRDLPAESSTNI----AARLQ-SGGLMECWNALYEL 55

Query: 53  --------------QVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYC----- 93
                         +  +G  C  ++DIIT NCWPAMLT LGFT EE N+LRG+C     
Sbjct: 56  KSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNS 115

Query: 94  -DASFAPSP 101
            D+S APSP
Sbjct: 116 GDSSPAPSP 124

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ23|EC13_ARATH Egg cell-secreted protein 1.3 OS=Arabidopsis thaliana GN=EC1.3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 50  LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGG 103
           L  +  +G  C  A+D+IT +CWPAMLT LGFT EE N+LRG+C    +P+ GG
Sbjct: 65  LNGETKLGYGCCNAVDVITTDCWPAMLTSLGFTLEETNVLRGFCQ---SPNSGG 115

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ24|EC12_ARATH Egg cell-secreted protein 1.2 OS=Arabidopsis thaliana GN=EC1.2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 36/46 (78%)

Query: 50  LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDA 95
           L  +  +G DC +A+++IT +CWPAMLT LGFT++E N+LRG+C +
Sbjct: 65  LNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETNVLRGFCQS 110

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRD8|EC11_ARATH Egg cell-secreted protein 1.1 OS=Arabidopsis thaliana GN=EC1.1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 29/46 (63%)

Query: 50  LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDA 95
           L  +  IG  C  AI  I   CWP M+  LGFTA+EG+ML+GYCD 
Sbjct: 76  LNGETYIGPGCCSAIRTIGRKCWPTMIGVLGFTAQEGDMLQGYCDG 121

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGG1|EC15_ARATH Egg cell-secreted protein 1.5 OS=Arabidopsis thaliana GN=EC1.5 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 56  IGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCD-----ASFAPSPGGLMVIYQP 110
           I  DC  AI ++  +CW  M T LG T  EGN LR YC+     +  +PSP    +   P
Sbjct: 86  IDKDCCGAIGLVVKDCWSVMFTSLGLTTMEGNNLREYCEFQAEKSELSPSPAPETLALSP 145

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
359482498	128	PREDICTED: uncharacterized protein LOC10	0.871	0.796	0.442	2e-17
296082551	135	unnamed protein product [Vitis vinifera]	0.752	0.651	0.474	4e-16
224060465	146	predicted protein [Populus trichocarpa]	0.521	0.417	0.567	8e-14
255578404	136	conserved hypothetical protein [Ricinus	0.435	0.375	0.647	1e-12
116830619	128	unknown [Arabidopsis thaliana]	0.820	0.75	0.356	2e-10
15235039	127	uncharacterized protein [Arabidopsis tha	0.820	0.755	0.356	2e-10
297825031	125	hypothetical protein ARALYDRAFT_900605 [	0.444	0.416	0.534	1e-09
297802032	127	hypothetical protein ARALYDRAFT_490711 [	0.384	0.354	0.6	7e-09
255566628	141	conserved hypothetical protein [Ricinus	0.572	0.475	0.410	2e-08
147774833	117	hypothetical protein VITISV_016791 [Viti	0.401	0.401	0.553	2e-08

>gi|359482498|ref|XP_002274398.2| PREDICTED: uncharacterized protein LOC100260034 [Vitis vinifera] gi|147772490|emb|CAN65099.1| hypothetical protein VITISV_039724 [Vitis vinifera] gi|297743029|emb|CBI35896.3| unnamed protein product [Vitis vinifera]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 71/131 (54%), Gaps = 29/131 (22%)

Query: 1   MALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMN-------- 52
           MALK +F ++ALT L+    ANA +  D   N    G D  TRLE SGGL+         
Sbjct: 1   MALKTLFLLVALTWLM----ANAAATRDLPTNP---GLDLTTRLETSGGLVECWNALMEI 53

Query: 53  --------------QVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFA 98
                         Q  +G +C +AI IIT NCWPAMLT LGFTAEEGN+L+GYC+AS  
Sbjct: 54  RQCTNEIILFFLNGQTVLGPECCQAISIITRNCWPAMLTSLGFTAEEGNILQGYCNASSG 113

Query: 99  PSPGGLMVIYQ 109
           P       +YQ
Sbjct: 114 PPTPASPPLYQ 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082551|emb|CBI21556.3| unnamed protein product [Vitis vinifera]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 66/116 (56%), Gaps = 28/116 (24%)

Query: 3   LKHVFFILALTCLIMANIANATSKNDPLNNNMKLG-YDHATRLEASGGLMN--------- 52
           +K+VF ++AL+ LI     NA++  + L  +MK    D   RLE SGGL+          
Sbjct: 4   IKNVFLLVALSWLI----TNASASRE-LPMSMKPAELDLVARLETSGGLVECWNALVELK 58

Query: 53  -------------QVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDA 95
                        Q DIG DC  AIDIIT NCWP MLT LGFTAEEGN+LRGYCDA
Sbjct: 59  SCTNEIILFFLNGQADIGPDCCGAIDIITRNCWPTMLTSLGFTAEEGNILRGYCDA 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060465|ref|XP_002300213.1| predicted protein [Populus trichocarpa] gi|222847471|gb|EEE85018.1| predicted protein [Populus trichocarpa]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 45/74 (60%), Gaps = 13/74 (17%)

Query: 50  LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDAS-----------FA 98
           +  Q DIG DC RAI  IT+NCWPAM T LGFT EEGN+LRGYCDAS            A
Sbjct: 70  MTGQADIGPDCCRAIHTITHNCWPAMFTSLGFTDEEGNILRGYCDASPNSPSIYFSPASA 129

Query: 99  PSP--GGLMVIYQP 110
           PSP   G    YQP
Sbjct: 130 PSPLAAGAPAQYQP 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578404|ref|XP_002530067.1| conserved hypothetical protein [Ricinus communis] gi|223530420|gb|EEF32307.1| conserved hypothetical protein [Ricinus communis]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 40/51 (78%)

Query: 50  LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPS 100
           L    DIG+DC R+I I T+NCWPAMLT +GFTAEEGN+LRGYCD + + S
Sbjct: 67  LNGHTDIGADCCRSIAIFTHNCWPAMLTSIGFTAEEGNILRGYCDNASSSS 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830619|gb|ABK28267.1| unknown [Arabidopsis thaliana]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 33/129 (25%)

Query: 1   MALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMN-------- 52
           MA    F    +T LI+      + ++ P  ++  +    A RL+ SGGLM         
Sbjct: 1   MASNTTFLFSTVTLLIILLNTTVSGRDLPAESSTNI----AARLQ-SGGLMECWNALYEL 55

Query: 53  --------------QVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYC----- 93
                         +  +G  C  ++DIIT NCWPAMLT LGFT EE N+LRG+C     
Sbjct: 56  KSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNS 115

Query: 94  -DASFAPSP 101
            D+S APSP
Sbjct: 116 GDSSPAPSP 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235039|ref|NP_195644.1| uncharacterized protein [Arabidopsis thaliana] gi|75213705|sp|Q9T039.1|EC14_ARATH RecName: Full=Egg cell-secreted protein 1.4; Flags: Precursor gi|4914446|emb|CAB43649.1| hypothetical protein [Arabidopsis thaliana] gi|7270918|emb|CAB80597.1| hypothetical protein [Arabidopsis thaliana] gi|91805627|gb|ABE65542.1| hypothetical protein At4g39340 [Arabidopsis thaliana] gi|332661658|gb|AEE87058.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 33/129 (25%)

Query: 1   MALKHVFFILALTCLIMANIANATSKNDPLNNNMKLGYDHATRLEASGGLMN-------- 52
           MA    F    +T LI+      + ++ P  ++  +    A RL+ SGGLM         
Sbjct: 1   MASNTTFLFSTVTLLIILLNTTVSGRDLPAESSTNI----AARLQ-SGGLMECWNALYEL 55

Query: 53  --------------QVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYC----- 93
                         +  +G  C  ++DIIT NCWPAMLT LGFT EE N+LRG+C     
Sbjct: 56  KSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNS 115

Query: 94  -DASFAPSP 101
            D+S APSP
Sbjct: 116 GDSSPAPSP 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825031|ref|XP_002880398.1| hypothetical protein ARALYDRAFT_900605 [Arabidopsis lyrata subsp. lyrata] gi|297326237|gb|EFH56657.1| hypothetical protein ARALYDRAFT_900605 [Arabidopsis lyrata subsp. lyrata]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 6/58 (10%)

Query: 50  LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCD------ASFAPSP 101
           L  +  +GS C  A+D+IT +CWPAMLT LGFT+EE N+LRG+C       +S APSP
Sbjct: 65  LNGETKLGSGCCNAVDVITTDCWPAMLTSLGFTSEETNVLRGFCQSPTSGGSSPAPSP 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802032|ref|XP_002868900.1| hypothetical protein ARALYDRAFT_490711 [Arabidopsis lyrata subsp. lyrata] gi|297314736|gb|EFH45159.1| hypothetical protein ARALYDRAFT_490711 [Arabidopsis lyrata subsp. lyrata]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 32/45 (71%)

Query: 50  LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCD 94
           L  +  +G  C  A+DIIT NCWPAMLT LGFT EE N+LRG+C 
Sbjct: 67  LNGETKLGVSCCEAVDIITTNCWPAMLTSLGFTPEEANVLRGFCQ 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566628|ref|XP_002524298.1| conserved hypothetical protein [Ricinus communis] gi|223536389|gb|EEF38038.1| conserved hypothetical protein [Ricinus communis]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 38  YDHATRLEASGG------LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRG 91
           +D   +L+A  G      L  +  +G  C  AI IIT  CWP M+  LGFT EEG++L G
Sbjct: 50  WDSLVQLQACTGEIILFFLNGETYLGHSCCEAIRIITKQCWPTMIDTLGFTTEEGDILEG 109

Query: 92  YC-----DASFAPSPGGL 104
           YC     D+++ PSP  L
Sbjct: 110 YCDKADDDSTYPPSPPSL 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774833|emb|CAN73446.1| hypothetical protein VITISV_016791 [Vitis vinifera]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 34/47 (72%)

Query: 50 LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDAS 96
          L  +  +G +C RAI II   CWPA+LT LGFT +E ++LRGYCDA+
Sbjct: 45 LNGETHLGPNCCRAIRIIEQQCWPALLTLLGFTPQEEDILRGYCDAT 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2136293	127	EC1.4 "AT4G39340" [Arabidopsis	0.444	0.409	0.551	8.2e-12
TAIR|locus:2052536	125	EC1.2 "AT2G21740" [Arabidopsis	0.435	0.408	0.5	3.5e-11
TAIR|locus:2052556	125	EC1.3 "AT2G21750" [Arabidopsis	0.435	0.408	0.518	7.4e-11
TAIR|locus:2030136	158	EC1.1 "AT1G76750" [Arabidopsis	0.452	0.335	0.471	9.7e-09
TAIR|locus:2176080	155	EC1.5 "AT5G64720" [Arabidopsis	0.393	0.296	0.431	2.6e-06

TAIR|locus:2136293 EC1.4 "AT4G39340" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 32/58 (55%), Positives = 39/58 (67%)

Query:    50 LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYC------DASFAPSP 101
             L  +  +G  C  ++DIIT NCWPAMLT LGFT EE N+LRG+C      D+S APSP
Sbjct:    67 LNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052536 EC1.2 "AT2G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 27/54 (50%), Positives = 40/54 (74%)

Query:    50 LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGG 103
             L  +  +G DC +A+++IT +CWPAMLT LGFT++E N+LRG+C +   P+ GG
Sbjct:    65 LNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETNVLRGFCQS---PNSGG 115

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052556 EC1.3 "AT2G21750" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 28/54 (51%), Positives = 37/54 (68%)

Query:    50 LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGG 103
             L  +  +G  C  A+D+IT +CWPAMLT LGFT EE N+LRG+C +   P+ GG
Sbjct:    65 LNGETKLGYGCCNAVDVITTDCWPAMLTSLGFTLEETNVLRGFCQS---PNSGG 115

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2030136 EC1.1 "AT1G76750" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:    50 LMNQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPG 102
             L  +  IG  C  AI  I   CWP M+  LGFTA+EG+ML+GYCD + + + G
Sbjct:    76 LNGETYIGPGCCSAIRTIGRKCWPTMIGVLGFTAQEGDMLQGYCDGNDSDNNG 128

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0005622 "intracellular" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0048240 "sperm capacitation" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2176080 EC1.5 "AT5G64720" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query:    56 IGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCD-----ASFAPSP 101
             I  DC  AI ++  +CW  M T LG T  EGN LR YC+     +  +PSP
Sbjct:    86 IDKDCCGAIGLVVKDCWSVMFTSLGLTTMEGNNLREYCEFQAEKSELSPSP 136


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117       117   0.00091  102 3  11 22  0.44    30
                                                     29  0.46    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.05u 0.11s 11.16t   Elapsed:  00:00:00
  Total cpu time:  11.05u 0.11s 11.16t   Elapsed:  00:00:00
  Start:  Fri May 10 08:29:38 2013   End:  Fri May 10 08:29:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005576 "extracellular region" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034113001 SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgun sequence); (128 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
pfam05617	67	pfam05617, Prolamin_like, Prolamin-like	3e-04

>gnl|CDD|218659 pfam05617, Prolamin_like, Prolamin-like

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 52 NQVDIGSDCYRAIDIITYNCWPAMLTFLGFTAE-EGNMLRGYCD 94
          N+ ++G DC +AI  I  +CWPA+             +L+ YC 
Sbjct: 24 NKGNLGPDCCQAILKIGDDCWPALFKMFPSLPFFPPKLLKNYCS 67

Both DUF784 and DUF1278 members are found to be expressed in the plant embryo sac and are regulated by the Myb98 transcription factor. Computational analysis has revealed that they are homologous to the plant prolamin superfamily (Protease inhibitor-seed storage-LTP family, pfam00234). In contrast to the typical prolamin members that have eight conserved Cys residues forming four pairs of disulfide bonds, both DUF784 and DUF1278 domains only contain six conserved Cys residues that may form three pairs of disulfide bonds. These two domains may have potential functions in lipid transfer or protection during plant embryo sac development and reproduction. This family has been merged with the DUF1278 family. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
PLN00213	118	predicted protein; Provisional	99.28
PF05617	70	Prolamin_like: Prolamin-like; InterPro: IPR008502	99.21
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	95.84

>PLN00213 predicted protein; Provisional

Probab=99.28  E-value=7.7e-12  Score=93.11  Aligned_cols=44  Identities=27%  Similarity=0.582  Sum_probs=38.9

Q ss_pred             ccCchhhHHHHHhhhcchhhhhhcCCCChhhhhhhhhccccCCCCCCCc
Q 045855           55 DIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGNMLRGYCDASFAPSPGG  103 (117)
Q Consensus        55 ~IG~~CC~AI~~I~~~CWP~M~~slGfT~eE~~iLrGyCd~~~~pSp~~  103 (117)
                      .||++||+|+...+ +|||+| +..+|.++   +||+.|.+.+..+++.
T Consensus        73 ~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~  116 (118)
T PLN00213         73 NLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPI  116 (118)
T ss_pred             ccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCC
Confidence            79999999999955 999996 99999998   9999999997666554

>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana

Probab=99.21  E-value=5.4e-12  Score=81.52  Aligned_cols=41  Identities=29%  Similarity=0.642  Sum_probs=37.4

Q ss_pred             eccCchhhHHHHHhhhcchhhhhhcCCCChhhhh----hhhhccc
Q 045855           54 VDIGSDCYRAIDIITYNCWPAMLTFLGFTAEEGN----MLRGYCD   94 (117)
Q Consensus        54 t~IG~~CC~AI~~I~~~CWP~M~~slGfT~eE~~----iLrGyCd   94 (117)
                      +.||++||++|+.++++|||+|+..+++++++.+    .|+++|+
T Consensus        26 ~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~   70 (70)
T PF05617_consen   26 KNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS   70 (70)
T ss_pred             CCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence            7899999999999999999998888888888777    9999996

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=95.84  E-value=0.0056  Score=43.48  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             CchhHHHHHHHHHHHHHhhhhcccccCCC
Q 045855            1 MALKHVFFILALTCLIMANIANATSKNDP   29 (117)
Q Consensus         1 MA~~~~fl~~~lt~~i~a~~a~~~~~r~~   29 (117)
                      ||||. ||||+|.|.+.-+||+.+++|+.
T Consensus         1 MaSK~-~llL~l~LA~lLlisSevaa~~~   28 (95)
T PF07172_consen    1 MASKA-FLLLGLLLAALLLISSEVAAREL   28 (95)
T ss_pred             CchhH-HHHHHHHHHHHHHHHhhhhhHHh
Confidence            99887 66666666666677788888775

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00