Citrus Sinensis ID: 045860

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKDR
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEccccHHHcHHHHHHHHHHHccccEEcccHHccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mattsfqniscgkydaflsfrgedtrKGFIGYLYTALNNkgiyvfrddkqlekggsispnLLKAIDESRISIIVLSKNYASSTWCLDELLKITecknredqifpifygveptvVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANIsgwelkdr
Flexible Loop (DISEMBL)
mattsfqniscgkyDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKvvanisgwelkdr
Low Complexity Region (SEG)
MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTasfgeafaeheeffRDNIEKVQKWRHALKVVANISGWELKDR
Disordered region (IsUnstruct)
******QNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWE****
Disordered Region (DISOPRED)
************KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEF*****EKVQKWRHALKVVANISGWELKD*
Disordered Region (DISEMBL)
MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKDR
Disordered Region (DISPRO)
*********SCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGW*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.881	0.123	0.563	6e-42
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.887	0.109	0.469	3e-29
O82500	1095	Putative disease resistan	no	no	0.868	0.126	0.447	4e-29
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.987	0.446	0.347	2e-23
Q9SYC9	571	Vesicle-associated protei	no	no	0.931	0.260	0.333	9e-20
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.843	0.328	0.369	6e-19
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.875	0.357	0.369	3e-18
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.762	0.064	0.275	2e-06
Q9FHE5	332	Uncharacterized protein P	no	no	0.506	0.243	0.366	8e-06
Q9FL92	1372	Probable WRKY transcripti	no	no	0.5	0.058	0.306	9e-06

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  169 bits (428), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 104/142 (73%), Gaps = 1/142 (0%)

Query: 14  YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
           YD FLSFRGEDTRK F  +LY  LN+KGI  F+DDK+LE G +I   L KAI+ES+ +I+
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 74  VLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           V S+NYA+S WCL+EL+KI ECK R  Q + PIFY V+P+ VR Q  SF +AF EHE  +
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 133 RDNIEKVQKWRHALKVVANISG 154
           +D++E +Q+WR AL   AN+ G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 97/147 (65%), Gaps = 5/147 (3%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           +YD F SFRGED R  F+ +L   L  K I  F DD ++E+  SI P LL AI ESRI+I
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDD-EIERSRSIGPELLSAIKESRIAI 68

Query: 73  IVLSKNYASSTWCLDELLKITEC-KNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEF 131
           ++ SKNYASSTWCL+EL++I +C  N    + PIF+ V+ + V+KQT  FG+ F E  + 
Sbjct: 69  VIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVFEETCKA 128

Query: 132 FRDNIEKVQKWRHALKVVANISGWELK 158
             ++ EK Q W+ AL  VA ++G++L+
Sbjct: 129 KSED-EK-QSWKQALAAVAVMAGYDLR 153

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 4/143 (2%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           +YD F SFRGED R  F+ +L     +KGI  FRDD  +++  +I   L  AI ES+IS+
Sbjct: 10  RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHELRAAIRESKISV 68

Query: 73  IVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTASFGEAFAEHEEF 131
           ++ S+NYASS+WCLDEL++I +CK  +  ++ P+FY V+P+ +RKQT  FG +F   E  
Sbjct: 69  VLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFL--ETC 126

Query: 132 FRDNIEKVQKWRHALKVVANISG 154
                E+   WR AL   ANI G
Sbjct: 127 CGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 92/161 (57%), Gaps = 3/161 (1%)

Query: 1   MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPN 60
           MA +S    +      F++FRG+D R GF+ +L  A+    I VF D  ++   G+   N
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVV--GTDLVN 58

Query: 61  LLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTA 119
           L   I ESR+++++ SK+Y SS WCLDEL +I +C N+      PIFY + P+ V +   
Sbjct: 59  LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKG 118

Query: 120 SFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKDR 160
            FG+ F   +E ++++ E+ QKW+ AL+ +  + G  L ++
Sbjct: 119 GFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGLRLAEK 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 92/153 (60%), Gaps = 4/153 (2%)

Query: 2   ATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
           ++T    I+  +Y  F++FRG++ R  F+G+L  A+  + I VF D+ +L +G +++  L
Sbjct: 346 SSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVEL-RGTNLN-YL 403

Query: 62  LKAIDESRISIIVLSKNYASSTWCLDELLKITE-CKNREDQIFPIFYGVEPTVVRKQTAS 120
            + I+ESR+++ + S+ Y  S WCLDEL+K+ E  +  +  + P+FY +  T  ++   +
Sbjct: 404 FRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGA 463

Query: 121 FGEAFAEHEEFFRDNIEKVQKWRHAL-KVVANI 152
           FG+     E  +R   E++QKW+ AL  V +NI
Sbjct: 464 FGDNLRNLEWEYRSEPERIQKWKEALSSVFSNI 496

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 3/138 (2%)

Query: 16  AFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVL 75
            F++FRG+D RKGF+ +L  AL  + I VF D++  E+ G    +L   I ES+I++++ 
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQ--EERGKYLISLFDTIGESKIALVIF 81

Query: 76  SKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRD 134
           S+ Y  S WC+DEL+KI E  ++    I PIFY ++  VV+  T  FG+ F +  + ++ 
Sbjct: 82  SEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQP 141

Query: 135 NIEKVQKWRHALKVVANI 152
             +K+ KW  AL  V  +
Sbjct: 142 EPKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 9/149 (6%)

Query: 16  AFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVL 75
            F+ FRG D RK FI +L  AL    I VF D+ +    GS   NLL  I+ES +++++ 
Sbjct: 17  VFICFRGADVRKHFISFLVPALREANINVFIDENEFL--GSEMANLLTRIEESELALVIF 74

Query: 76  SKNYASSTWCLDELLKITECKNREDQ----IFPIFYGVEPTVVRKQTASFGEAFAEHEEF 131
           S ++  S  CL+EL KI E   R+DQ    + PIFY V+P+ V+     FG+ F   E  
Sbjct: 75  SVDFTRSHRCLNELAKIKE---RKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERN 131

Query: 132 FRDNIEKVQKWRHALKVVANISGWELKDR 160
            R  +   QKW+ AL+ +    G  L ++
Sbjct: 132 NRHMLPITQKWKEALESIPGSIGMPLAEQ 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 27/149 (18%)

Query: 14  YDAFLSF-RGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           YD  + + R + + + FI +L  +L  +GI V+    +++           A+ + R+ I
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVYEKFNEVD-----------ALPKCRVLI 716

Query: 73  IVLSKNYASSTWCLDELLKITECKNREDQI-FPIFYGVEPTVVRKQTASFGEAFAEHEEF 131
           IVL+  Y  S      LL I E ++ ED++ +PIFY + P         F      +E F
Sbjct: 717 IVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSP-------YDFVCNSKNYERF 764

Query: 132 FRDNIEKVQKWRHALKVVANISGWELKDR 160
           +  +  K  KW+ ALK +  + G+ L D+
Sbjct: 765 YLQDEPK--KWQAALKEITQMPGYTLTDK 791

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 23  EDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASS 82
           ED  KG I +L   L NK I VF D++++   G    NL K I +S+IS+ + S++    
Sbjct: 51  EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKG--LKNLFKRIQDSKISLAIFSESKCD- 107

Query: 83  TWCLDELLKITECKNREDQIFPIFYGVEPT 112
               ++LLK  E     D+  PIFY V+ T
Sbjct: 108 ---FNDLLKNNESA---DEAIPIFYKVDAT 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 8/88 (9%)

Query: 23  EDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASS 82
           E+ R  F+ +L  AL  KG+    +D  ++   S+S      ++ +R+S+++L  N    
Sbjct: 14  EEVRYSFVSHLSKALQRKGV----NDVFIDSDDSLSNESQSMVERARVSVMILPGN---R 66

Query: 83  TWCLDELLKITECKNREDQ-IFPIFYGV 109
           T  LD+L+K+ +C+  +DQ + P+ YGV
Sbjct: 67  TVSLDKLVKVLDCQKNKDQVVVPVLYGV 94

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224130518	1121	tir-nbs-lrr resistance protein [Populus	1.0	0.142	0.577	3e-49
105922482	1121	TIR-NBS-LRR type disease resistance prot	1.0	0.142	0.577	4e-49
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.918	0.122	0.621	3e-47
224144414	520	tir-nbs-lrr resistance protein [Populus	0.912	0.280	0.619	1e-46
224145716	532	tir-nbs-lrr resistance protein [Populus	0.912	0.274	0.605	8e-46
37781280	1136	nematode resistance-like protein [Solanu	0.9	0.126	0.605	7e-45
37781226	1136	nematode resistance protein [Solanum tub	0.9	0.126	0.605	1e-44
37781356	1136	nematode resistance-like protein [Solanu	0.9	0.126	0.605	1e-44
399920225	1076	TIR-NBS-LRR [Rosa rugosa]	0.893	0.132	0.615	2e-44
113205444	645	TMV resistance protein N, putative [Sola	0.918	0.227	0.572	2e-44

>gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 1   MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPN 60
           MA +  +  +  KYD FLSFRGEDTRK F  +LYTAL ++G+  FRDD++LE+G  IS  
Sbjct: 1   MAASYSRTTTRWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERGNEISRE 60

Query: 61  LLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTA 119
           LL+AI +SR S+IV S+NY SSTWCL+EL+KI EC  +  Q + P+FY V+P+ VR QT 
Sbjct: 61  LLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVECMKQGRQTVIPVFYDVDPSEVRNQTG 120

Query: 120 SFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKDR 160
              +AFA+HEE F+DNIEKVQ WR A+K+VAN+SGW+L+DR
Sbjct: 121 RLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922482|gb|ABF81419.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 1   MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPN 60
           MA +  +  +  KYD FLSFRGEDTRK F  +LYTAL ++G+  FRDD++LE+G  IS  
Sbjct: 1   MAASYSRTTTRWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERGNEISRE 60

Query: 61  LLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTA 119
           LL+AI +SR S+IV S+NY SSTWCL+EL+KI EC  +  Q + P+FY V+P+ VR QT 
Sbjct: 61  LLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVECMKQGRQTVIPVFYDVDPSEVRNQTG 120

Query: 120 SFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKDR 160
              +AFA+HEE F+DNIEKVQ WR A+K+VAN+SGW+L+DR
Sbjct: 121 RLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/148 (62%), Positives = 118/148 (79%), Gaps = 1/148 (0%)

Query: 14  YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
           Y  FLSFRGEDTRK F G+LY+ L+   + VF+DD++LEKG  I+P LLKAI++S  S+I
Sbjct: 26  YHVFLSFRGEDTRKNFTGHLYSGLSRFKLLVFKDDEKLEKGKVIAPELLKAIEQSMFSVI 85

Query: 74  VLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           VLSKNYASS+WCLDEL KI EC +++ Q IFP+FY VEP+ VRKQT SF + FA+HEE +
Sbjct: 86  VLSKNYASSSWCLDELAKIIECGDQKGQKIFPVFYDVEPSDVRKQTGSFQDDFAKHEEKY 145

Query: 133 RDNIEKVQKWRHALKVVANISGWELKDR 160
           R+NI+KV+KWR A+  VAN+SGW  K+R
Sbjct: 146 RENIDKVRKWRAAMTQVANLSGWTSKNR 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144414|ref|XP_002325282.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862157|gb|EEE99663.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 110/147 (74%), Gaps = 1/147 (0%)

Query: 14  YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
           YD FLSFRGEDTRK F  +LYTAL N GI+ FRDD +L +G  ISP LLKAI+ SRISI+
Sbjct: 1   YDVFLSFRGEDTRKNFTDHLYTALGNAGIHTFRDDNELPRGEEISPQLLKAIEGSRISIV 60

Query: 74  VLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           V SK+YASS WCLDEL+KI EC+ +  Q + PIFY  EP+ VRKQT S+ +AF EHEE F
Sbjct: 61  VFSKHYASSRWCLDELVKIIECRQKIGQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEERF 120

Query: 133 RDNIEKVQKWRHALKVVANISGWELKD 159
           ++ +EKV KWR AL    N+SGW L +
Sbjct: 121 KEEMEKVNKWRGALAEAGNLSGWGLHN 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145716|ref|XP_002325741.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|224145719|ref|XP_002325742.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862616|gb|EEF00123.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862617|gb|EEF00124.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 109/147 (74%), Gaps = 1/147 (0%)

Query: 14  YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
           YD FLSFRG+DTRK F  +LYTAL   GI+ FRDD +L +G  ISP L+KAI+ SRISI+
Sbjct: 10  YDVFLSFRGKDTRKNFTDHLYTALIQAGIHTFRDDNELPRGEEISPQLVKAIEGSRISIV 69

Query: 74  VLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           V SK YASS WCLDEL+KI EC+ + DQ + PIFY  EP+ VRKQT S+ +AF EHEE F
Sbjct: 70  VFSKQYASSRWCLDELVKIVECRQKIDQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEEHF 129

Query: 133 RDNIEKVQKWRHALKVVANISGWELKD 159
           ++ +EKV KWR AL    N+SGW L +
Sbjct: 130 KEEMEKVNKWRGALAEAGNLSGWGLNN 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781280|gb|AAP44392.1| nematode resistance-like protein [Solanum tuberosum]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 114/147 (77%), Gaps = 3/147 (2%)

Query: 14  YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
           YD FLSFRGED RK F+ +LY AL  K I  F+DD++LEKG  ISP L+ +I+ESRI++I
Sbjct: 18  YDVFLSFRGEDVRKTFVDHLYLALQQKCINTFKDDEKLEKGKFISPELMSSIEESRIALI 77

Query: 74  VLSKNYASSTWCLDELLKITECKNREDQI-FPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           + SKNYA+STWCLDEL KI ECKN + QI  P+FY V+P+ VRKQ + FGEAF++HE  F
Sbjct: 78  IFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARF 137

Query: 133 RDNIEKVQKWRHALKVVANISGWELKD 159
           ++  +KVQKWR AL+  ANISGW+L +
Sbjct: 138 QE--DKVQKWRAALEEAANISGWDLPN 162

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781226|gb|AAP44390.1| nematode resistance protein [Solanum tuberosum]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 114/147 (77%), Gaps = 3/147 (2%)

Query: 14  YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
           YD FLSFRGED RK F+ +LY AL  K I  F+DD++LEKG  ISP L+ +I+ESRI++I
Sbjct: 18  YDVFLSFRGEDVRKTFVDHLYLALEQKCINTFKDDEKLEKGKFISPELVSSIEESRIALI 77

Query: 74  VLSKNYASSTWCLDELLKITECKNREDQI-FPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           + SKNYA+STWCLDEL KI ECKN + QI  P+FY V+P+ VRKQ + FGEAF++HE  F
Sbjct: 78  IFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARF 137

Query: 133 RDNIEKVQKWRHALKVVANISGWELKD 159
           ++  +KVQKWR AL+  ANISGW+L +
Sbjct: 138 QE--DKVQKWRAALEEAANISGWDLPN 162

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781356|gb|AAP44393.1| nematode resistance-like protein [Solanum tuberosum]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 114/147 (77%), Gaps = 3/147 (2%)

Query: 14  YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
           YD FLSFRGED RK F+ +LY AL  K I  F+DD++LEKG  ISP L+ +I+ESRI++I
Sbjct: 18  YDVFLSFRGEDVRKTFVDHLYLALQQKCINTFKDDEKLEKGKFISPELVSSIEESRIALI 77

Query: 74  VLSKNYASSTWCLDELLKITECKNREDQI-FPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           + SKNYA+STWCLDEL KI ECKN + QI  P+FY V+P+ VRKQ + FGEAF++HE  F
Sbjct: 78  IFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARF 137

Query: 133 RDNIEKVQKWRHALKVVANISGWELKD 159
           ++  +KVQKWR AL+  ANISGW+L +
Sbjct: 138 QE--DKVQKWRAALEEAANISGWDLPN 162

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399920225|gb|AFP55572.1| TIR-NBS-LRR [Rosa rugosa]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/143 (61%), Positives = 104/143 (72%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           KYD FLSFRGEDTRKGF GYLY  L  +GI  FRDD QLE+G +ISP LL AI++SR +I
Sbjct: 18  KYDVFLSFRGEDTRKGFTGYLYHELQRRGIRSFRDDPQLERGTTISPKLLTAIEQSRFAI 77

Query: 73  IVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           +VLS NYASSTWCL EL KI EC      I PIFY V+P+ VR Q  SF EAF EHEE F
Sbjct: 78  VVLSPNYASSTWCLLELSKILECMEERGTILPIFYEVDPSHVRHQRGSFAEAFQEHEEKF 137

Query: 133 RDNIEKVQKWRHALKVVANISGW 155
            +  ++V+ WR AL  VA+++GW
Sbjct: 138 GEGNKEVEGWRDALTKVASLAGW 160

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113205444|gb|AAW28561.2| TMV resistance protein N, putative [Solanum demissum]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 117/152 (76%), Gaps = 5/152 (3%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           KY  FLSFRGEDTRK F G+LY  L N+GI  F+DDK+LE G SI   LL+AI+ES++++
Sbjct: 18  KYVVFLSFRGEDTRKTFTGHLYEGLKNRGISTFQDDKRLEHGDSIPKELLRAIEESQVAL 77

Query: 73  IVLSKNYASSTWCLDELLKITECKNRED--QIFPIFYGVEPTVVRKQTASFGEAFAEHEE 130
           IV SKNYA+S WCL+EL+KI ECK+ E+   + PIFY V+P+ VR Q+ SFG AFAEHE 
Sbjct: 78  IVFSKNYATSKWCLNELVKIMECKDEENGQTVIPIFYDVDPSHVRNQSESFGAAFAEHEL 137

Query: 131 FFRDNIE---KVQKWRHALKVVANISGWELKD 159
            ++D++E   KVQ+WR+AL V AN+ G++++D
Sbjct: 138 KYKDDVEGMQKVQRWRNALTVAANLKGYDIRD 169

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.95	0.132	0.496	1.2e-33
TAIR|locus:2032713	363	AT1G72900 [Arabidopsis thalian	0.875	0.385	0.489	3.3e-31
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.881	0.512	0.482	4.2e-31
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.881	0.380	0.475	8.8e-31
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.906	0.382	0.450	7.9e-30
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.875	0.795	0.475	1.6e-29
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.912	0.112	0.477	2.8e-29
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.875	0.368	0.468	7.1e-29
TAIR|locus:2013875	429	AT1G66090 [Arabidopsis thalian	0.906	0.337	0.449	1.2e-28
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.906	0.121	0.469	1.4e-28

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 378 (138.1 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 77/155 (49%), Positives = 102/155 (65%)

Query:     1 MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPN 60
             MA++S  + S   YD FLSFRGEDTRK F  +LY  LN+KGI  F+DDK+LE G +I   
Sbjct:     1 MASSS--SSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGE 58

Query:    61 LLKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTX 119
             L KAI+ES+ +I+V S+NYA+S WCL+EL+KI ECK R  Q + PIFY V+P+ VR Q  
Sbjct:    59 LCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKE 118

Query:   120 XXXXXXXXXXXXXRDNIEKVQKWRHALKVVANISG 154
                          +D++E +Q+WR AL   AN+ G
Sbjct:   119 SFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032713 AT1G72900 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 70/143 (48%), Positives = 94/143 (65%)

Query:    14 YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
             YD FLSFRG DTR+ FI +LY  L  + I  F+DDK+LE G  ISP L+ AI++SR +++
Sbjct:    10 YDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVV 69

Query:    74 VLSKNYASSTWCLDELLKITEC-KNRED-QIFPIFYGVEPTVVRKQTXXXXXXXXXXXXX 131
             V+S NYA+S+WCLDEL+KI +  KN+    + PIFYGV P  +R+Q              
Sbjct:    70 VVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAR 129

Query:   132 XRDNIEKVQKWRHALKVVANISG 154
              +D +EKV KWR AL  +A+ISG
Sbjct:   130 EKD-LEKVLKWRQALAALADISG 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 69/143 (48%), Positives = 93/143 (65%)

Query:    13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
             KYD FLSFRG DTR+ FI +LY  L  + I  F+DDK+LE G  ISP L +AI+ES+ ++
Sbjct:     8 KYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    73 IVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTXXXXXXXXXXXXX 131
             +V+S NYA+S WCLDEL+KI + +N+    + PIFYGV+P  +R+Q              
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAR 127

Query:   132 XRDNIEKVQKWRHALKVVANISG 154
               D+ EKV  WR AL  +A+ISG
Sbjct:   128 EEDH-EKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 68/143 (47%), Positives = 92/143 (64%)

Query:    13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
             KYD FLSFRG DTR+ FI +LY     + I  F+DDK+LE G  ISP L +AI+ES+ ++
Sbjct:     8 KYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    73 IVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTXXXXXXXXXXXXX 131
             +V+S NYA+S WCLDEL+KI + +N+    + PIFYGV+P  +R+Q              
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAR 127

Query:   132 XRDNIEKVQKWRHALKVVANISG 154
               D+ EKV  WR AL  +A+ISG
Sbjct:   128 EEDH-EKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 68/151 (45%), Positives = 98/151 (64%)

Query:    13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
             K+D FLSFRG DTR+ FI +LY  L  + I  F+DDK+L+ G  I+P L++AI+ SR ++
Sbjct:    10 KFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAV 69

Query:    73 IVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTXXXXXXXXXXXXX 131
             +V+S NYA+S WCL+EL+KI + +N    ++ PIFYGV+P  VR+Q              
Sbjct:    70 VVVSVNYAASRWCLEELVKIMDFENMGSLKVMPIFYGVDPCHVRRQIGEVAEQFKKHEG- 128

Query:   132 XRDNIEKVQKWRHALKVVANISG---WELKD 159
              R++ EKV  WR AL  +A+ISG   W+ +D
Sbjct:   129 -REDHEKVLSWRQALTNLASISGDCSWKWED 158

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 68/143 (47%), Positives = 88/143 (61%)

Query:    13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
             KYD FLSFRG DTR  FI +LY  L  + I  F+DDK+LE G   SP L   I+ SR ++
Sbjct:     8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query:    73 IVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTXXXXXXXXXXXXX 131
             +V+S+NYA+S+WCLDEL+ I + + +    + PIFYGVEP  VR QT             
Sbjct:    68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126

Query:   132 XRDNIEKVQKWRHALKVVANISG 154
              R++ EKV KWR AL   A +SG
Sbjct:   127 -REDPEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 73/153 (47%), Positives = 98/153 (64%)

Query:     2 ATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
             +++S  + +  K D F+SFRGED RK F+ +L+   +  GI  FRDD  L++G SISP L
Sbjct:     6 SSSSSSSSTVWKTDVFVSFRGEDVRKTFVSHLFCEFDRMGIKAFRDDLDLQRGKSISPEL 65

Query:    62 LKAIDESRISIIVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVRKQTXXX 121
             + AI  SR +I+V+S+NYA+S+WCLDELLKI EC   +D I PIFY V+P+ VR+Q    
Sbjct:    66 IDAIKGSRFAIVVVSRNYAASSWCLDELLKIMECN--KDTIVPIFYEVDPSDVRRQRGSF 123

Query:   122 XXXXXXXXXXXRDNIEKVQKWRHALKVVANISG 154
                         D  EKV KW+ ALK +A ISG
Sbjct:   124 GEDVESHS----DK-EKVGKWKEALKKLAAISG 151

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 67/143 (46%), Positives = 89/143 (62%)

Query:    13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
             KYD FLSFRG DTR+ FI +LY  L  + I  F+DDK+LE G  IS  L + I+ SR ++
Sbjct:     8 KYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAV 67

Query:    73 IVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTXXXXXXXXXXXXX 131
             +V+S+ YA+S+WCLDEL+ I + + +    + PIFYGVEP  VR QT             
Sbjct:    68 VVVSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHGS- 126

Query:   132 XRDNIEKVQKWRHALKVVANISG 154
              R++ EKV KWR AL   A +SG
Sbjct:   127 -REDHEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2013875 AT1G66090 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 67/149 (44%), Positives = 92/149 (61%)

Query:    13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
             +Y  F SF G D R  F+ +L    N  GI +F DD+++E+  +++P L +AI ES+I I
Sbjct:    25 RYMTFTSFHGPDVRNTFLSHLRKQFNTNGITMF-DDQRMERSQTLAPTLTQAIRESKIYI 83

Query:    73 IVLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTXXXXXXXXXXXXX 131
             ++LSKNYASS+WCLDELL+I  CK +  Q +  IFYGV P+ VRKQT             
Sbjct:    84 VLLSKNYASSSWCLDELLEILNCKEKRGQRVMTIFYGVNPSDVRKQTGEFGIAFNETCA- 142

Query:   132 XRDNIEKVQKWRHALKVVANISGWELKDR 160
              R   E+ +KW HAL  V NI+G  ++DR
Sbjct:   143 -RKTEEERRKWSHALTCVGNITGVHVQDR 170

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.4e-28, P = 1.4e-28
 Identities = 70/149 (46%), Positives = 93/149 (62%)

Query:    14 YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
             YD F+SFRG D RK F+ +LY +L   GI  F DD +L++G  ISP LL AI+ S+I I+
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    74 VLSKNYASSTWCLDELLKITEC-KNREDQ-IFPIFYGVEPTVVRKQTXXXXXXXXXXXXX 131
             VL+K+YASS WCLDEL+ I +  KN     +FPIF  V+P+ +R Q              
Sbjct:    77 VLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKNS 136

Query:   132 XRDNIEKVQKWRHALKVVANISGWELKDR 160
                N  K++ WR AL  VANISGW++K+R
Sbjct:   137 HPLN--KLKDWREALTKVANISGWDIKNR 163

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00770103 tir-nbs-lrr resistance protein (1121 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam01582	135	pfam01582, TIR, TIR domain	1e-43
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-39
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-39
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	2e-13
pfam13676	102	pfam13676, TIR_2, TIR domain	4e-09

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  140 bits (355), Expect = 1e-43
 Identities = 57/135 (42%), Positives = 83/135 (61%), Gaps = 3/135 (2%)

Query: 16  AFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVL 75
            F+SF G+D R  F+ +L   L  KGI +  DD+    G SI  NL +AI++SR +I++ 
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 76  SKNYASSTWCLDELLKITECKNREDQ---IFPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           S NYASS WCLDEL++I +C         I PIFY V+P+ VR Q+  FG+AF +  ++ 
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 133 RDNIEKVQKWRHALK 147
            D  +K++ W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  129 bits (327), Expect = 2e-39
 Identities = 60/144 (41%), Positives = 82/144 (56%), Gaps = 8/144 (5%)

Query: 13  KYDAFLSFRG-EDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRIS 71
           +YD F+S+ G ED R  F+ +L   L   G+ VF DD   E GG     + +AI++SRI+
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDF--EPGGGDLEEIDEAIEKSRIA 58

Query: 72  IIVLSKNYASSTWCLDELLKITECKNREDQ--IFPIFYGVEPTVVRKQTASFGEAFAEHE 129
           I+VLS NYA S WCLDEL+   E    E    + PIFY V P+ VRKQ   F + F ++ 
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 130 -EFFRDNIEKVQKWRHALKVVANI 152
            ++  D  EK Q W+ AL  V + 
Sbjct: 119 LKWPED--EKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  140 bits (354), Expect = 4e-39
 Identities = 65/146 (44%), Positives = 95/146 (65%), Gaps = 4/146 (2%)

Query: 14  YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISII 73
           YD F SF GED R  F+ +    L+ K I  F+D+ ++E+  S+ P L +AI +SRI+++
Sbjct: 13  YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVV 71

Query: 74  VLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTASFGEAFAEHEEFF 132
           V SKNYASS+WCL+ELL+I  CK    Q + P+FYG++P+ VRKQT  FGEAF +  +  
Sbjct: 72  VFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQ-- 129

Query: 133 RDNIEKVQKWRHALKVVANISGWELK 158
               ++  +W+ AL  VANI G+  +
Sbjct: 130 NKTEDEKIQWKQALTDVANILGYHSQ 155

syringae 6; Provisional. Length = 1153

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 15  DAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIV 74
           D F++ RG DT++     LY  L+   +  F D+K ++ G  +   +  AI   ++ + V
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 75  LSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEPTVVR 115
            S  Y  S +CL EL  I E K R   + PIF  V+P+ +R
Sbjct: 88  FSPRYCESYFCLHELALIMESKKR---VIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 51.0 bits (123), Expect = 4e-09
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 17  FLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLS 76
           F+S+   D  + +  +L  AL   GI V+ D   +  G      + +A+  + + +++LS
Sbjct: 2   FISYASAD--REWAEWLADALEAAGIRVWLD-WDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 77  KNYASSTWCLDELLKITECKNREDQIFPIFYG 108
             Y +S WC  E         R  ++ P+   
Sbjct: 59  PAYLASPWCRAEWG---AALERGKRLIPVRLE 87

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.95
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.79
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.27
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.84
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.04
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.35
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	94.89
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	93.97
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	91.99
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	87.4
COG4271	233	Predicted nucleotide-binding protein containing TI	83.63
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	81.38
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	80.48

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=2.6e-43  Score=262.30  Aligned_cols=139  Identities=26%  Similarity=0.471  Sum_probs=127.3

Q ss_pred             CCCCCCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChh
Q 045860            5 SFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTW   84 (160)
Q Consensus         5 ss~~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~w   84 (160)
                      |++++....|||||||++.|+++.|++||+.+|+++||++|+|+.++.+|+.+.+.|.++|++|+++|+|||++|+.|.|
T Consensus        18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W   97 (187)
T PLN03194         18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF   97 (187)
T ss_pred             ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence            55566667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCceeeEEeccCchhhhcc-cchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcccceeccC
Q 045860           85 CLDELLKITECKNREDQIFPIFYGVEPTVVRKQ-TASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKD  159 (160)
Q Consensus        85 c~~El~~~~~~~~~~~~iiPVf~~v~p~~v~~~-~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~~  159 (160)
                      |++||.+++++   +..||||||+|+|++||+| .|.             .+++++++||.||++|++++|++++.
T Consensus        98 CLdEL~~I~e~---~~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~  157 (187)
T PLN03194         98 CLHELALIMES---KKRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDS  157 (187)
T ss_pred             HHHHHHHHHHc---CCEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCC
Confidence            99999999986   4579999999999999997 321             23689999999999999999998753

>PLN03210 Resistant to P

Probab=100.00  E-value=2.9e-41  Score=310.44  Aligned_cols=155  Identities=43%  Similarity=0.763  Sum_probs=145.2

Q ss_pred             CCCCCCCCCCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCC
Q 045860            1 MATTSFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYA   80 (160)
Q Consensus         1 ~~s~ss~~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~   80 (160)
                      |||+||++ +.++|||||||+|+|+|+.|++||+.+|.++||.+|.|+ ++.+|+.+..++.++|++|+++|||+|++|+
T Consensus         1 ~~~~~~~~-~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya   78 (1153)
T PLN03210          1 MASSSSSS-RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA   78 (1153)
T ss_pred             CCCCCCCC-CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence            67766554 567899999999999999999999999999999999987 6999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHH-hhcCCceeeEEeccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcccceeccC
Q 045860           81 SSTWCLDELLKITEC-KNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKD  159 (160)
Q Consensus        81 ~S~wc~~El~~~~~~-~~~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~~  159 (160)
                      .|.||++||.++++| ++.+++||||||+|+|++||+|+|.||++|.++.+...  ++++++||+||++|++++||++.+
T Consensus        79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~--~~~~~~w~~al~~~~~~~g~~~~~  156 (1153)
T PLN03210         79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKT--EDEKIQWKQALTDVANILGYHSQN  156 (1153)
T ss_pred             cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccc--hhHHHHHHHHHHHHhCcCceecCC
Confidence            999999999999999 88899999999999999999999999999999887653  689999999999999999999865

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.95  E-value=3e-29  Score=181.33  Aligned_cols=133  Identities=34%  Similarity=0.570  Sum_probs=116.5

Q ss_pred             EEEecccCCCcchHHHHHHHHHhcC--CcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHHHH
Q 045860           16 AFLSFRGEDTRKGFIGYLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKIT   93 (160)
Q Consensus        16 VFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~   93 (160)
                      |||||++.+.+..|+++|.++|+++  |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|+.|.||+.|+..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333467899999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             HH-hhc--CCceeeEEeccCchhhh-cccchHHHHHHHHHHhhcCC--HHHHHHHHHHHHH
Q 045860           94 EC-KNR--EDQIFPIFYGVEPTVVR-KQTASFGEAFAEHEEFFRDN--IEKVQKWRHALKV  148 (160)
Q Consensus        94 ~~-~~~--~~~iiPVf~~v~p~~v~-~~~~~f~~~f~~~~~~~~~~--~~~~~~W~~al~~  148 (160)
                      ++ ...  ...|+|||+++.+++++ .+.+.|+..|..+......+  .+....|++++.+
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~  141 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH  141 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence            99 443  48999999999999999 79999999998888776643  5688999998763

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=7.2e-26  Score=162.38  Aligned_cols=136  Identities=39%  Similarity=0.674  Sum_probs=115.3

Q ss_pred             cccEEEeccc-CCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHH
Q 045860           13 KYDAFLSFRG-EDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLK   91 (160)
Q Consensus        13 ~~dVFISy~~-~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~   91 (160)
                      .|||||||++ ++....|+.+|...|...|+.+|.|+..  +|.....+|.++|++|+++|+|+|++|+.|.||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            4899999998 4555789999999999999999998743  343333499999999999999999999999999999999


Q ss_pred             HHHH-h-hcCCceeeEEeccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 045860           92 ITEC-K-NREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVAN  151 (160)
Q Consensus        92 ~~~~-~-~~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~  151 (160)
                      ++++ . ....+||||+++..|+.+..+.+.++..+...+..+.++..+ ..|+.++..+.+
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            9998 3 377899999999999999999999999998876666654444 789999988754

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.79  E-value=3.3e-20  Score=126.68  Aligned_cols=87  Identities=33%  Similarity=0.531  Sum_probs=76.0

Q ss_pred             EEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHHHHHH
Q 045860           16 AFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKITEC   95 (160)
Q Consensus        16 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~~~   95 (160)
                      |||||++.|.  .++..|...|+++|+++|+|. ++.+|..+.++|.++|++|+.+|+++|++|..|+||..|+..|.+ 
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence            8999999995  679999999999999999997 999999999999999999999999999999999999999999854 


Q ss_pred             hhcCCceeeEEec
Q 045860           96 KNREDQIFPIFYG  108 (160)
Q Consensus        96 ~~~~~~iiPVf~~  108 (160)
                        .+++||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              45689999975

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.27  E-value=2.5e-11  Score=101.83  Aligned_cols=127  Identities=26%  Similarity=0.356  Sum_probs=98.9

Q ss_pred             CCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCC-------
Q 045860            9 ISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYAS-------   81 (160)
Q Consensus         9 ~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~-------   81 (160)
                      +-++..||||||+..-. ...++.|.-.|+-+||+||+|.+.+..|.. .+.+.+.|..++.+|+|+||+.+.       
T Consensus       608 ~~skq~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~n  685 (832)
T KOG3678|consen  608 MLSKQIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDN  685 (832)
T ss_pred             cccCCcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence            45677899999987643 567888888999999999999988988865 578899999999999999999653       


Q ss_pred             -ChhHHHHHHHHHHHhhcCCceeeEEec---------cCchhhhcccchHHHHHHHHHHhhcCCHHHHHHH
Q 045860           82 -STWCLDELLKITECKNREDQIFPIFYG---------VEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKW  142 (160)
Q Consensus        82 -S~wc~~El~~~~~~~~~~~~iiPVf~~---------v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W  142 (160)
                       -.|...|+.-+.++   ++.|||||-.         +.|.|++..+..-|..|...++...  .+++.++
T Consensus       686 CeDWVHKEl~~Afe~---~KNIiPI~D~aFE~Pt~ed~iPnDirmi~kyNGvKWvHdYQdA~--maKvvRF  751 (832)
T KOG3678|consen  686 CEDWVHKELKCAFEH---QKNIIPIFDTAFEFPTKEDQIPNDIRMITKYNGVKWVHDYQDAC--MAKVVRF  751 (832)
T ss_pred             HHHHHHHHHHHHHHh---cCCeeeeecccccCCCchhcCcHHHHHHHhccCeeeehhhHHHH--HHHHHHH
Confidence             35777788877775   6789999843         7788888777655666666555433  4555555

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.84  E-value=6.2e-09  Score=74.18  Aligned_cols=91  Identities=20%  Similarity=0.335  Sum_probs=49.3

Q ss_pred             ccEEEecccCCCcchHHHHHHHHHhcC-------CcEE----------EEeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 045860           14 YDAFLSFRGEDTRKGFIGYLYTALNNK-------GIYV----------FRDDKQLEKGGSISPNLLKAIDESRISIIVLS   76 (160)
Q Consensus        14 ~dVFISy~~~D~~~~fv~~L~~~L~~~-------gi~v----------~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS   76 (160)
                      |.|||||++.|.. ..+..|...+...       .+..          .-+..+......+...|.+.|..|+++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999998864 2466677777663       1211          11222223345788899999999999999999


Q ss_pred             cCCCCChhHHHHHHHHHHHhhcCCceeeEEec
Q 045860           77 KNYASSTWCLDELLKITECKNREDQIFPIFYG  108 (160)
Q Consensus        77 ~~~~~S~wc~~El~~~~~~~~~~~~iiPVf~~  108 (160)
                      ++...|.|+.+|+..+++   .+..||.|.++
T Consensus        80 ~~T~~s~wV~~EI~~A~~---~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK---KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT---T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH---CCCCEEEEECC
Confidence            999999999999999887   57788888764

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.04  E-value=1e-05  Score=58.62  Aligned_cols=65  Identities=23%  Similarity=0.321  Sum_probs=52.9

Q ss_pred             cEEEecccCCCcc-hHHHHHHHHHhcC-CcEEEEeCCCCCC--CCCchHHHHHHHHhcceEEEEeecCC
Q 045860           15 DAFLSFRGEDTRK-GFIGYLYTALNNK-GIYVFRDDKQLEK--GGSISPNLLKAIDESRISIIVLSKNY   79 (160)
Q Consensus        15 dVFISy~~~D~~~-~fv~~L~~~L~~~-gi~v~~d~~d~~~--G~~~~~~i~~~I~~S~~~ivvlS~~~   79 (160)
                      -|||||+.....+ ..|..|...|++. |+.|.+|..+...  +..+..=+.+.+++++.+|+|.||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            4999998855432 4588899999999 9999999888743  55666677888999999999999543

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.35  E-value=0.00097  Score=47.32  Aligned_cols=78  Identities=17%  Similarity=0.126  Sum_probs=62.1

Q ss_pred             cEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCC-------------C
Q 045860           15 DAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYA-------------S   81 (160)
Q Consensus        15 dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~-------------~   81 (160)
                      .|||.|+ .|.  ..+..+...|+..|+.+.+-......|..+.+.+.+.+.+++..|++++|+=.             .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 554  56788999999889877766656689999999999999999999999999611             1


Q ss_pred             ChhHHHHHHHHHHH
Q 045860           82 STWCLDELLKITEC   95 (160)
Q Consensus        82 S~wc~~El~~~~~~   95 (160)
                      ......|+..++.+
T Consensus        78 R~NVifE~G~f~g~   91 (125)
T PF10137_consen   78 RQNVIFELGLFIGK   91 (125)
T ss_pred             ccceeehhhHHHhh
Confidence            23467788888875

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=94.89  E-value=0.15  Score=33.25  Aligned_cols=66  Identities=24%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             cEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCC-CCCCchHHHHHHHHhcceEEEEeecCCCCC
Q 045860           15 DAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLE-KGGSISPNLLKAIDESRISIIVLSKNYASS   82 (160)
Q Consensus        15 dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~-~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S   82 (160)
                      .||||=.-.|.. .-...|...+.+.|+.+..-+. +. .+....+.+.+.|++|++.|.++-..|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~-~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEF-FPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeee-ecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            389998777764 4467788889887765443321 32 345556778899999999999999998754

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=93.97  E-value=0.073  Score=42.21  Aligned_cols=95  Identities=22%  Similarity=0.154  Sum_probs=65.3

Q ss_pred             CCCCcccEEEecccCCCcchHHHHHHHHHhcC--CcEEEEeCC---CCCCCCCchHHHHHHH-HhcceEEEEeecCCCCC
Q 045860            9 ISCGKYDAFLSFRGEDTRKGFIGYLYTALNNK--GIYVFRDDK---QLEKGGSISPNLLKAI-DESRISIIVLSKNYASS   82 (160)
Q Consensus         9 ~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~---d~~~G~~~~~~i~~~I-~~S~~~ivvlS~~~~~S   82 (160)
                      ...+.||+=+||.++-.  +.|.++..+++.+  .+..|.|-.   -+.+| ++.+.+...- .+|++.+|++..+|...
T Consensus       173 ~~~~~~DiG~SFaGEAR--~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~-sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEAR--NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPG-SLVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhhh--hHHHHHHHhhhcccCCceeeeechhhccccCc-cHHHhcccccCceEEEEEEEeCCceEEe
Confidence            45678999999998863  7899999999955  466777641   12222 2222222222 26999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcCCceeeEEe
Q 045860           83 TWCLDELLKITECKNREDQIFPIFY  107 (160)
Q Consensus        83 ~wc~~El~~~~~~~~~~~~iiPVf~  107 (160)
                      .||..|...+-.- ..-+.++||.|
T Consensus       250 ~~c~~E~~~~r~~-~~~d~~~rI~~  273 (329)
T COG4916         250 STCHIEGLEGRLN-PILDTGFRIKY  273 (329)
T ss_pred             eeeccchhhcccc-ccccccceEEE
Confidence            9999998765543 22235666665

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=91.99  E-value=1.7  Score=29.67  Aligned_cols=80  Identities=18%  Similarity=0.120  Sum_probs=54.3

Q ss_pred             chHHHHHHHHHhcCCcEEEEeCC-CCC---CCCCchHHH----HHHHHhcceEEEEeecCCCCChhHHHHHHHHHHHhhc
Q 045860           27 KGFIGYLYTALNNKGIYVFRDDK-QLE---KGGSISPNL----LKAIDESRISIIVLSKNYASSTWCLDELLKITECKNR   98 (160)
Q Consensus        27 ~~fv~~L~~~L~~~gi~v~~d~~-d~~---~G~~~~~~i----~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~~~~~~   98 (160)
                      ...+..+...|++.|+.++.-.+ +..   .+..+..+|    .++|++|+++|+++.+.- .+.-+..|+..|...   
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al---   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL---   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC---
Confidence            45688899999999998886542 221   122233333    568999999999988755 667788999999874   


Q ss_pred             CCceeeEEeccC
Q 045860           99 EDQIFPIFYGVE  110 (160)
Q Consensus        99 ~~~iiPVf~~v~  110 (160)
                      +++|+-+.-+..
T Consensus        89 gkpv~~~~~d~~  100 (113)
T PF05014_consen   89 GKPVILLTEDDR  100 (113)
T ss_dssp             TSEEEEEECCCC
T ss_pred             CCEEEEEEcCCc
Confidence            556655544433

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=87.40  E-value=3.3  Score=26.45  Aligned_cols=59  Identities=10%  Similarity=0.112  Sum_probs=37.6

Q ss_pred             ccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEEeecC
Q 045860           14 YDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIVLSKN   78 (160)
Q Consensus        14 ~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivvlS~~   78 (160)
                      ++|+|...+.+. ...+..+...|++.|+++-+|.+.    ..+...+..+-. +....|+ +.++
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~~----~~~~~~~~~a~~~g~~~~ii-ig~~   61 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLRN----EKLGKKIREAQLQKIPYILV-VGDK   61 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEE-ECcc
Confidence            687777654433 345778999999999999998743    344455555543 3344444 4443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=83.63  E-value=4.1  Score=31.29  Aligned_cols=86  Identities=16%  Similarity=0.136  Sum_probs=59.2

Q ss_pred             cEEEecccCCCcchHHHHHHHHHhcC-C-cEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCC-----C------
Q 045860           15 DAFLSFRGEDTRKGFIGYLYTALNNK-G-IYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYA-----S------   81 (160)
Q Consensus        15 dVFISy~~~D~~~~fv~~L~~~L~~~-g-i~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~-----~------   81 (160)
                      -|||-|+++-    .+.....+|.+. . ..+|.|. -...|..+.+.+.+-|.+++..|++++|+=.     .      
T Consensus        84 kvFvv~ghd~----iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~  158 (233)
T COG4271          84 KVFVVSGHDA----IARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAF  158 (233)
T ss_pred             eEEEEeccHH----HHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhcc
Confidence            8999996543    455555666543 4 4566665 6778999999999999999999999999833     1      


Q ss_pred             ---ChhHHHHHHHHHHHhhcCCceeeEE
Q 045860           82 ---STWCLDELLKITECKNREDQIFPIF  106 (160)
Q Consensus        82 ---S~wc~~El~~~~~~~~~~~~iiPVf  106 (160)
                         ......||...+.+ ..+.+|+.+.
T Consensus       159 praRqNVifELGm~mgr-LgRkrv~Il~  185 (233)
T COG4271         159 PRARQNVIFELGMFMGR-LGRKRVMILM  185 (233)
T ss_pred             ccccccchhhHhhHHhh-cccceEEEEe
Confidence               12356788777775 2234444443

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=81.38  E-value=13  Score=24.68  Aligned_cols=64  Identities=13%  Similarity=0.066  Sum_probs=44.4

Q ss_pred             HHHHHHHHhcCCcEEEEeCC-CCCCCCCchHHHH---HHHHhcceEEEEeecCCCCChhHHHHHHHHHHH
Q 045860           30 IGYLYTALNNKGIYVFRDDK-QLEKGGSISPNLL---KAIDESRISIIVLSKNYASSTWCLDELLKITEC   95 (160)
Q Consensus        30 v~~L~~~L~~~gi~v~~d~~-d~~~G~~~~~~i~---~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~~~   95 (160)
                      .......|+.+|+.|.-=-. ....|.++.+-+.   ..+..|+..++.  |++-.|.-|+-|...|...
T Consensus        18 f~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l--~gWe~S~GA~~E~~~A~~l   85 (92)
T PF14359_consen   18 FNAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYML--PGWENSRGARLEHELAKKL   85 (92)
T ss_pred             HHHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEc--CCcccCcchHHHHHHHHHC
Confidence            45588899999976653221 2356666655443   445577755554  9999999999999988874

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=80.48  E-value=7.6  Score=24.80  Aligned_cols=61  Identities=20%  Similarity=0.204  Sum_probs=38.0

Q ss_pred             ccEEEecccCC--CcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecC
Q 045860           14 YDAFLSFRGED--TRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKN   78 (160)
Q Consensus        14 ~dVFISy~~~D--~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~   78 (160)
                      ++|+|...+.+  .....+..+...|++.|+.+-+|..    +..+...+..+-...-..++++.++
T Consensus         2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~----~~~~~k~~~~a~~~g~~~~iiig~~   64 (94)
T cd00738           2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR----ERKIGKKFREADLRGVPFAVVVGED   64 (94)
T ss_pred             eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC----CcCHhHHHHHHHhCCCCEEEEECCC
Confidence            57777654330  1235677899999999999999763    3455555555544333456666653

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		7e-32
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		7e-28
1fyv_A	161	Crystal Structure Of The Tir Domain Of Human Tlr1 L		6e-05

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  132 bits (333), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 10  SCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESR 69
           +  KYD FLSFRG DTR  FI +LY  L  + I  F+DDK+LE G   SP L   I+ SR
Sbjct: 5   TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSR 64
Query: 70  ISIIVLSKNYASSTWCLDELLKITECKNRED-QIFPIFYGVEPTVVRKQTXXXXXXXXXX 128
            +++V+S+NYA+S+WCLDEL+ I + + +    + PIFYGVEP  VR QT          
Sbjct: 65  FAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT--GVLAEQFK 122
Query: 129 XXXXRDNIEKVQKWRHALKVVANISG 154
               R++ EKV KWR AL   A +SG
Sbjct: 123 KHASREDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  119 bits (298), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           +Y+ FLSFRG DTR+ F  +LY +L    I+ FRDD +L KG  I PNLL+AID+S+I +
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 73  IVLSKNYASSTWCLDELLKITECKNREDQ--IFPIFYGVEPTVVRKQTXXXXXXXXXXXX 130
            ++S  YA S WCL EL +I   +  + +  I PIFY V+P+ VR QT            
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 XXRDNIEKVQKWRHALKVVANISGWEL 157
               + + +Q W+ ALK V ++ GW +
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWHI 179

>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1 Length = 161

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
          ++ AF+S+ G D+       L   L  +G  +   ++    G SI  N++  I++S  SI
Sbjct: 12 QFHAFISYSGHDSF-WVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 73 IVLSKNYASSTWCLDEL 89
           VLS N+  S WC  EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-89
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	1e-87
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	2e-72
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	7e-18
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	3e-10
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	4e-10
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
2js7_A	160	Myeloid differentiation primary response protein M	6e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  257 bits (660), Expect = 1e-89
 Identities = 72/148 (48%), Positives = 92/148 (62%), Gaps = 3/148 (2%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           KYD FLSFRG DTR  FI +LY  L  + I  F+DDK+LE G   SP L   I+ SR ++
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query: 73  IVLSKNYASSTWCLDELLKITECKNREDQI-FPIFYGVEPTVVRKQTASFGEAFAEHEEF 131
           +V+S+NYA+S+WCLDEL+ I + + +      PIFYGVEP  VR QT    E F +H   
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126

Query: 132 FRDNIEKVQKWRHALKVVANISGWELKD 159
            R++ EKV KWR AL   A +SG    D
Sbjct: 127 -REDPEKVLKWRQALTNFAQLSGDCSGD 153

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  254 bits (650), Expect = 1e-87
 Identities = 64/149 (42%), Positives = 94/149 (63%), Gaps = 4/149 (2%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           +Y+ FLSFRG DTR+ F  +LY +L    I+ FRDD +L KG  I PNLL+AID+S+I +
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94

Query: 73  IVLSKNYASSTWCLDELLKITECKNREDQ--IFPIFYGVEPTVVRKQTASFGEAFAEHEE 130
            ++S  YA S WCL EL +I   +  + +  I PIFY V+P+ VR QT  + +AF +H  
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154

Query: 131 FFRDNIEKVQKWRHALKVVANISGWELKD 159
             + + + +Q W+ ALK V ++ GW +  
Sbjct: 155 --KFDGQTIQNWKDALKKVGDLKGWHIGK 181

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  213 bits (545), Expect = 2e-72
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 4/135 (2%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
            +D F+S   ED +  F+  L   L   G  V+ DD  L  G S+  ++ K +  SR  I
Sbjct: 20  PHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78

Query: 73  IVLSKNYASSTWCLDELLKITECKNREDQ-IFPIFYGVEPTVVRKQTASFGEAFAEHEEF 131
           +VLS ++    W   EL  + + ++     I PI++ V    V   + +  +  A +   
Sbjct: 79  VVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS- 137

Query: 132 FRDNIEKVQKWRHAL 146
              +++++     A+
Sbjct: 138 -TKSVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 74.3 bits (183), Expect = 7e-18
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKAIDESRI 70
            YD  +    ED        L + L  +   +  F   +    GG+I   L +A+  S  
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 71  SIIVLSKNYASSTWCLDELLKI-TECKNREDQIFPIFYGVE----PTVVRKQTASFGEAF 125
            +++++  +    WC  ++L+  TE    E    P+  G+     P  +R          
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYY---VDG 124

Query: 126 AEHEEFFRDNIEKVQKWRHAL 146
              +  FR   E V ++   L
Sbjct: 125 RGPDGGFRQVKEAVMRYLQTL 145

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 54.7 bits (131), Expect = 3e-10
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 14/110 (12%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTAL-----------NNKGIYVFRDDKQLEKGGSISPNL 61
            YDA+LS+   D  +                      + G  +F  D+ L   G+   ++
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 62  LKAIDESRISIIVLSKNYA-SSTWCLDELLKITEC--KNREDQIFPIFYG 108
            + +D+S+  IIV++ NY     W + EL           E ++  I   
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECS 111

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 54.9 bits (132), Expect = 4e-10
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKAIDESRI 70
           ++ AF+S+   D        L   L   +  I +   +   + G SIS N++  I++S  
Sbjct: 35  RFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 71  SIIVLSKNYASSTWCLDELLKITEC--KNREDQIFPIFYGVEP 111
           SI VLS N+  + WC  E             D I  I     P
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIP 136

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 14 YDAFLSFRGEDTRKGFIGYLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKAIDESRIS 71
          YDAF+S+   D        +   L   N    +    +    G  I  N++ +I++S  +
Sbjct: 6  YDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKT 64

Query: 72 IIVLSKNYASSTWCLDEL 89
          + VLS+N+  S W   EL
Sbjct: 65 VFVLSENFVKSEWXKYEL 82

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 13  KYDAFLSFRGEDT---RKGFIGYLYTALNNKGIYVF----RDDKQLEKGGSISPNLLKAI 65
           KYDA+L F  +D    +   + +L T  +++  +      RD      G +   N+  AI
Sbjct: 670 KYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERD---FVPGENRIANIQDAI 726

Query: 66  DESRISIIVLSKNYASSTWCLDEL 89
             SR  + ++S+++    WCL+  
Sbjct: 727 WNSRKIVCLVSRHFLRDGWCLEAF 750

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKAIDE-SR 69
           ++DAF+ +   D +  F+  +   L   N  + +   D+ +  G  +     + I++  R
Sbjct: 16  RFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 73

Query: 70  ISIIVLSKNYASSTWCLDELLKITEC--KNREDQIFPIFYG 108
             ++V+S +Y  S  C  +            + ++ PI Y 
Sbjct: 74  RMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYK 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.97
2js7_A	160	Myeloid differentiation primary response protein M	99.94
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.94
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.94
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.45
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.81
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	94.15
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	87.75
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	87.07
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	83.3

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=9.4e-52  Score=312.78  Aligned_cols=154  Identities=42%  Similarity=0.777  Sum_probs=141.1

Q ss_pred             CCCCCCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChh
Q 045860            5 SFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTW   84 (160)
Q Consensus         5 ss~~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~w   84 (160)
                      ||++.+.++|||||||+++|+++.|+.+|+++|+++||++|+|++++.+|+.|.++|.++|++|+++|+|||++|+.|.|
T Consensus        27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W  106 (204)
T 3ozi_A           27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW  106 (204)
T ss_dssp             -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred             CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-hh-cCCceeeEEeccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcccceeccCC
Q 045860           85 CLDELLKITEC-KN-REDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELKDR  160 (160)
Q Consensus        85 c~~El~~~~~~-~~-~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~~~  160 (160)
                      |++||..+++| ++ .+++||||||+|+|++||+|+|.||++|.++.+.+.  ++++++||.||++|++++||++.++
T Consensus       107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~  182 (204)
T 3ozi_A          107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKN  182 (204)
T ss_dssp             HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred             HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCC
Confidence            99999999999 54 678999999999999999999999999999998874  6899999999999999999999764

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1e-50  Score=302.03  Aligned_cols=148  Identities=48%  Similarity=0.814  Sum_probs=126.6

Q ss_pred             CCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHH
Q 045860            9 ISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDE   88 (160)
Q Consensus         9 ~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~E   88 (160)
                      +..+.|||||||+++|+++.|+++|+++|+++||++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++|
T Consensus         4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E   83 (176)
T 3jrn_A            4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE   83 (176)
T ss_dssp             ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred             CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence            34678999999999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-hhcCCceeeEEeccCchhhhcccchHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcccceecc
Q 045860           89 LLKITEC-KNREDQIFPIFYGVEPTVVRKQTASFGEAFAEHEEFFRDNIEKVQKWRHALKVVANISGWELK  158 (160)
Q Consensus        89 l~~~~~~-~~~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~  158 (160)
                      |..+++| +..+++||||||+|+|++||+|+|.||++|.++.++  .+++++++||.||++|++++||++.
T Consensus        84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            9999999 888999999999999999999999999999999987  4589999999999999999999984

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=7.5e-36  Score=218.11  Aligned_cols=119  Identities=27%  Similarity=0.386  Sum_probs=110.0

Q ss_pred             CCCCCcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHH
Q 045860            8 NISCGKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLD   87 (160)
Q Consensus         8 ~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~   87 (160)
                      ..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            35578999999999999 45799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhcCCceeeEEeccCchhhhcccchHHHHHHH
Q 045860           88 ELLKITEC-KNREDQIFPIFYGVEPTVVRKQTASFGEAFAE  127 (160)
Q Consensus        88 El~~~~~~-~~~~~~iiPVf~~v~p~~v~~~~~~f~~~f~~  127 (160)
                      |+..++++ ...+++||||||+++|++|++|.|.|++.|..
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~  134 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF  134 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence            99999999 77788999999999999999999999977653

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.97  E-value=1.4e-32  Score=199.35  Aligned_cols=133  Identities=17%  Similarity=0.291  Sum_probs=93.2

Q ss_pred             CCCCCCCCcccEEEecccCCCcchHHHHHHHHHhc--CCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCC
Q 045860            5 SFQNISCGKYDAFLSFRGEDTRKGFIGYLYTALNN--KGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASS   82 (160)
Q Consensus         5 ss~~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~--~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S   82 (160)
                      |.|...++.|||||||+++|.  .||.+|.++|++  .|+++|++++|+.+|+.+.++|.++|++|+++|+|+|++|++|
T Consensus         2 ~~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S   79 (146)
T 3ub2_A            2 PGSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD   79 (146)
T ss_dssp             --CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred             CCCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence            455667889999999999997  568999999999  5999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH-hhcCCceeeEEeccCchhhhcccc----h----HHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045860           83 TWCLDELLKITEC-KNREDQIFPIFYGVEPTVVRKQTA----S----FGEAFAEHEEFFRDNIEKVQKWRHAL  146 (160)
Q Consensus        83 ~wc~~El~~~~~~-~~~~~~iiPVf~~v~p~~v~~~~~----~----f~~~f~~~~~~~~~~~~~~~~W~~al  146 (160)
                      .||+.|+..|+++ .....+||||||++++.++....+    .    ....|.++       .+.+.+|++||
T Consensus        80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            9999999999998 444458889999988666543221    1    12333333       36688898875

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.94  E-value=7.9e-28  Score=176.72  Aligned_cols=102  Identities=18%  Similarity=0.278  Sum_probs=92.7

Q ss_pred             CCCCCcccEEEecccCCCcchHHHHHHHHHhcC--CcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEEeecCCCCChh
Q 045860            8 NISCGKYDAFLSFRGEDTRKGFIGYLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIVLSKNYASSTW   84 (160)
Q Consensus         8 ~~~~~~~dVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivvlS~~~~~S~w   84 (160)
                      .+.++.|||||||+++|.  .||.+|.++|++.  |+++|++++|+.+|..+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            344678999999999994  7999999999985  69999999999999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHHH--hhcCCceeeEEeccCc
Q 045860           85 CLDELLKITEC--KNREDQIFPIFYGVEP  111 (160)
Q Consensus        85 c~~El~~~~~~--~~~~~~iiPVf~~v~p  111 (160)
                      |+.|+..|+++  .+.+++||||+|+..+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            99999999998  4556799999997654

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.94  E-value=3e-27  Score=173.44  Aligned_cols=102  Identities=25%  Similarity=0.364  Sum_probs=90.7

Q ss_pred             CcccEEEecccCCCc---------chHHHHHHH-HHh-cCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCC
Q 045860           12 GKYDAFLSFRGEDTR---------KGFIGYLYT-ALN-NKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYA   80 (160)
Q Consensus        12 ~~~dVFISy~~~D~~---------~~fv~~L~~-~L~-~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~   80 (160)
                      +.|||||||+++|.+         ..||.+|.. .|+ +.|+++|++++|+.+|..+.++|.++|++|+++|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            479999999999973         568888665 699 689999999999999999999999999999999999999997


Q ss_pred             -CChhHHHHHHHHHHH--hhcCCceeeEEeccCchh
Q 045860           81 -SSTWCLDELLKITEC--KNREDQIFPIFYGVEPTV  113 (160)
Q Consensus        81 -~S~wc~~El~~~~~~--~~~~~~iiPVf~~v~p~~  113 (160)
                       .|.||..|+..|+++  .+++.+||||+++..+..
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~  116 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRGI  116 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence             999999999999998  667789999999866643

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.94  E-value=5.7e-28  Score=180.25  Aligned_cols=103  Identities=27%  Similarity=0.427  Sum_probs=89.5

Q ss_pred             CCCCCCcccEEEecccCCCcchHHHH-HHHHHhc--CCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCCh
Q 045860            7 QNISCGKYDAFLSFRGEDTRKGFIGY-LYTALNN--KGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASST   83 (160)
Q Consensus         7 ~~~~~~~~dVFISy~~~D~~~~fv~~-L~~~L~~--~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~   83 (160)
                      ....++.|||||||+++|.  .||.+ |.++|++  .|+++|++++|+.+|..+.++|.++|++|+++|+|+|++|+.|.
T Consensus        29 ~~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~  106 (178)
T 2j67_A           29 QLKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE  106 (178)
T ss_dssp             -CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred             ccCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence            3567789999999999996  78976 9999998  79999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH--hhcCCceeeEEeccCc
Q 045860           84 WCLDELLKITEC--KNREDQIFPIFYGVEP  111 (160)
Q Consensus        84 wc~~El~~~~~~--~~~~~~iiPVf~~v~p  111 (160)
                      ||+.|+..|+++  .+.+++||||||+..|
T Consensus       107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~  136 (178)
T 2j67_A          107 WCHYEFYFAHHNLFHENSDHIILILLEPIP  136 (178)
T ss_dssp             GGGTHHHHTTCC-------CEEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence            999999999976  5667899999997544

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.94  E-value=3.1e-28  Score=176.92  Aligned_cols=104  Identities=23%  Similarity=0.349  Sum_probs=93.5

Q ss_pred             CCCcccEEEecccCCCcchHHHH-HHHHHhcC--CcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHH
Q 045860           10 SCGKYDAFLSFRGEDTRKGFIGY-LYTALNNK--GIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCL   86 (160)
Q Consensus        10 ~~~~~dVFISy~~~D~~~~fv~~-L~~~L~~~--gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~   86 (160)
                      .++.|||||||+++|.  .||.+ |.++|++.  |+++|+|++|+.+|..+.++|.++|++|+++|+|+|++|+.|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4678999999999997  78997 99999986  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--hhcCCceeeEEec-cCchhhh
Q 045860           87 DELLKITEC--KNREDQIFPIFYG-VEPTVVR  115 (160)
Q Consensus        87 ~El~~~~~~--~~~~~~iiPVf~~-v~p~~v~  115 (160)
                      .|+..|+++  .+.+++||||+|+ +.+..+.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999999965  6677899999996 4444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=1.1e-21  Score=174.52  Aligned_cols=103  Identities=19%  Similarity=0.371  Sum_probs=93.5

Q ss_pred             CCCCCcccEEEecccCCCcchHH-HHHHHHHhc-----CCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCC
Q 045860            8 NISCGKYDAFLSFRGEDTRKGFI-GYLYTALNN-----KGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYAS   81 (160)
Q Consensus         8 ~~~~~~~dVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~   81 (160)
                      ...++.|||||||+++|.  .|| ..|.+.||+     .|+++|+++||+.||+.+.++|.++|++||++|+|+|++|+.
T Consensus       665 ~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~  742 (844)
T 3j0a_A          665 EPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR  742 (844)
T ss_dssp             SSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred             cccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc
Confidence            345789999999999997  566 569999996     489999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHH--hhcCCceeeEEeccCch
Q 045860           82 STWCLDELLKITEC--KNREDQIFPIFYGVEPT  112 (160)
Q Consensus        82 S~wc~~El~~~~~~--~~~~~~iiPVf~~v~p~  112 (160)
                      |+||+.|+..|+++  .+.+++||||||+..|.
T Consensus       743 s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          743 DGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             HTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             ChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            99999999999988  67788999999986654

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.45  E-value=1.3e-07  Score=64.81  Aligned_cols=73  Identities=7%  Similarity=0.028  Sum_probs=57.5

Q ss_pred             CcccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHH
Q 045860           12 GKYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLK   91 (160)
Q Consensus        12 ~~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~   91 (160)
                      ..|.+||||+.+| .   .+.|...|.+.|+... |               +.|+.|+++|++.++...+|+||.+|+..
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            4689999999998 2   4567777753355333 1               67899999999999999999999999998


Q ss_pred             HHHHhhcCCceeeEEe
Q 045860           92 ITECKNREDQIFPIFY  107 (160)
Q Consensus        92 ~~~~~~~~~~iiPVf~  107 (160)
                      |.+   .+.+||-|.-
T Consensus        63 A~~---~gkpIigV~~   75 (111)
T 1eiw_A           63 ARK---SSKPIITVRP   75 (111)
T ss_dssp             HTT---TTCCEEEECC
T ss_pred             HHH---cCCCEEEEEc
Confidence            776   5777777763

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.81  E-value=6.1e-05  Score=55.51  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHhcCCcEEEEeCCCCC-------C-CCCchHHHHHHHHhcceEEEEeecCCCCChhHHHHHHHHH-HHhhc
Q 045860           28 GFIGYLYTALNNKGIYVFRDDKQLE-------K-GGSISPNLLKAIDESRISIIVLSKNYASSTWCLDELLKIT-ECKNR   98 (160)
Q Consensus        28 ~fv~~L~~~L~~~gi~v~~d~~d~~-------~-G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~-~~~~~   98 (160)
                      ...+.|..--.+..+--|.|.++..       . -..|.+.|.+.|..|+.+|+++|++...|.|..+|++.|+ +   .
T Consensus        32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~---~  108 (189)
T 3hyn_A           32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGT---K  108 (189)
T ss_dssp             HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTT---T
T ss_pred             HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHh---c
Confidence            3455565555555555666765552       2 2457788899999999999999999999999999999998 5   5


Q ss_pred             CCceeeEEec
Q 045860           99 EDQIFPIFYG  108 (160)
Q Consensus        99 ~~~iiPVf~~  108 (160)
                      +.+||-|..+
T Consensus       109 ~~PII~Vy~~  118 (189)
T 3hyn_A          109 GLPVIVIYPD  118 (189)
T ss_dssp             CCCEEEEETT
T ss_pred             CCcEEEEECC
Confidence            7888888876

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=94.15  E-value=0.55  Score=33.60  Aligned_cols=73  Identities=8%  Similarity=0.078  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHH----HHHHHhcceEEEEeec--CCCCChhHHHHHHHHHHHhhcCCc
Q 045860           28 GFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNL----LKAIDESRISIIVLSK--NYASSTWCLDELLKITECKNREDQ  101 (160)
Q Consensus        28 ~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i----~~~I~~S~~~ivvlS~--~~~~S~wc~~El~~~~~~~~~~~~  101 (160)
                      .+...+...|++.|+.+++-..+   ...+...|    .++|++|+++|++++|  .-..+.-...|+..|...   +++
T Consensus        27 ~~~~~l~~~l~~~G~~v~~P~~~---~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al---gKP  100 (161)
T 2f62_A           27 SYYNKVRELLKKENVMPLIPTDN---EATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL---NKM  100 (161)
T ss_dssp             HHHHHHHHHHHTTTCEEECTTTT---CCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT---TCE
T ss_pred             HHHHHHHHHHHHCCCEEECCCcc---CcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC---CCE
Confidence            56888999999999988873211   11234444    6789999999999996  444566788999988874   666


Q ss_pred             eeeEE
Q 045860          102 IFPIF  106 (160)
Q Consensus       102 iiPVf  106 (160)
                      |+-+.
T Consensus       101 Vi~l~  105 (161)
T 2f62_A          101 VLTFT  105 (161)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            66654

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=87.75  E-value=5.7  Score=28.08  Aligned_cols=87  Identities=13%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             CcccEEEecccC-CC-cchHHHHHHHHHhcCCcEEEEeCCCCC-----CCCC-------chHHHHHHHHhcceEEEEeec
Q 045860           12 GKYDAFLSFRGE-DT-RKGFIGYLYTALNNKGIYVFRDDKQLE-----KGGS-------ISPNLLKAIDESRISIIVLSK   77 (160)
Q Consensus        12 ~~~dVFISy~~~-D~-~~~fv~~L~~~L~~~gi~v~~d~~d~~-----~G~~-------~~~~i~~~I~~S~~~ivvlS~   77 (160)
                      +...|||+=.-. +. .......+...|++.| .+..+. ...     .|..       +...-.+.|++|+++|++++ 
T Consensus        10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~-~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-   86 (165)
T 2khz_A           10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEH-VADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-   86 (165)
T ss_dssp             CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGG-TTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-Cccccc-ccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence            345799984322 11 1214577999999999 776443 121     2211       11222478999999999997 


Q ss_pred             CCCCChhHHHHHHHHHHHhhcCCceeeEE
Q 045860           78 NYASSTWCLDELLKITECKNREDQIFPIF  106 (160)
Q Consensus        78 ~~~~S~wc~~El~~~~~~~~~~~~iiPVf  106 (160)
                        ..+.-+..|+..|..   .++.|+-+.
T Consensus        87 --~~d~Gt~~EiGyA~a---lgKPVi~l~  110 (165)
T 2khz_A           87 --QPSLGVGYELGRAVA---LGKPILCLF  110 (165)
T ss_dssp             --SCCHHHHHHHHHHHH---TCSSEEEEE
T ss_pred             --CCCCCHHHHHHHHHH---CCCEEEEEE
Confidence              567889999999987   466666653

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=87.07  E-value=5.3  Score=28.18  Aligned_cols=86  Identities=16%  Similarity=0.255  Sum_probs=53.4

Q ss_pred             cEEEe--cccCCCcchHHHHHHHHHhcCCcEEEEeC---CCC-CCCCC-------chHHHHHHHHhcceEEEEeecCCCC
Q 045860           15 DAFLS--FRGEDTRKGFIGYLYTALNNKGIYVFRDD---KQL-EKGGS-------ISPNLLKAIDESRISIIVLSKNYAS   81 (160)
Q Consensus        15 dVFIS--y~~~D~~~~fv~~L~~~L~~~gi~v~~d~---~d~-~~G~~-------~~~~i~~~I~~S~~~ivvlS~~~~~   81 (160)
                      -||++  +.+...+..+...+...|++.| .|+-..   .++ ..|..       +.+.-.+.|++|+++|++++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            46665  2232223356788999999999 664321   111 01111       33334568999999999998   55


Q ss_pred             ChhHHHHHHHHHHHhhcCCceeeEEe
Q 045860           82 STWCLDELLKITECKNREDQIFPIFY  107 (160)
Q Consensus        82 S~wc~~El~~~~~~~~~~~~iiPVf~  107 (160)
                      |.-...|+..|...   +++|+-++-
T Consensus        80 d~Gt~~EiG~A~al---gkPV~~l~~  102 (152)
T 4fyk_A           80 SLGVGYELGRAVAL---GKPILCLFR  102 (152)
T ss_dssp             CHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred             CCCHHHHHHHHHHc---CCeEEEEEe
Confidence            77888999988874   666665553

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=83.30  E-value=8.6  Score=27.31  Aligned_cols=77  Identities=9%  Similarity=0.084  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHhcC--CcEEEEeCCCC----CCCCCchHHH----HHHHHhcceEEEEeecCCCCChhHHHHHHHHHHHhh
Q 045860           28 GFIGYLYTALNNK--GIYVFRDDKQL----EKGGSISPNL----LKAIDESRISIIVLSKNYASSTWCLDELLKITECKN   97 (160)
Q Consensus        28 ~fv~~L~~~L~~~--gi~v~~d~~d~----~~G~~~~~~i----~~~I~~S~~~ivvlS~~~~~S~wc~~El~~~~~~~~   97 (160)
                      .+..++..+|+++  |+.++.=.++-    .++..+...|    .++|++|+++|+++. ....+.....|+..|...  
T Consensus        20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~--   96 (162)
T 3ehd_A           20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK--   96 (162)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC--
Confidence            4577799999875  88888633222    1233444444    457999999999994 445678899999999884  


Q ss_pred             cCCceeeEEec
Q 045860           98 REDQIFPIFYG  108 (160)
Q Consensus        98 ~~~~iiPVf~~  108 (160)
                       +++|+.+.-+
T Consensus        97 -gkPVi~~~~D  106 (162)
T 3ehd_A           97 -GIPVVALYTD  106 (162)
T ss_dssp             -TCCEEEECCC
T ss_pred             -CCEEEEEEcC
Confidence             6667666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	1e-21
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-17

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 1e-21
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISI 72
           ++ AF+S+ G D+       L   L  +G+ +   ++    G SI  N++  I++S  SI
Sbjct: 12  QFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 73  IVLSKNYASSTWCLDELLKITECKNREDQIFPIFYGVEP 111
            VLS N+  S WC  EL         E     I   +EP
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEP 109

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-17
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 13  KYDAFLSFRGEDTRKGFIGYLYTAL--NNKGIYVFRDDKQLEKGGSISPNLLKAIDESRI 70
            YDAF+S+   D        +   L   N    +    +    G  I  N++ +I++S  
Sbjct: 5   CYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 71  SIIVLSKNYASSTWCLDELLKITECKNRE--DQIFPIFYGVEP 111
           ++ VLS+N+  S WC  EL         E  D    I      
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIE 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.92
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.9
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	93.82
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	92.86
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	83.6
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	83.35

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-26  Score=167.05  Aligned_cols=105  Identities=26%  Similarity=0.451  Sum_probs=94.4

Q ss_pred             CCCCCCcccEEEecccCCCcchHH-HHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhH
Q 045860            7 QNISCGKYDAFLSFRGEDTRKGFI-GYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWC   85 (160)
Q Consensus         7 ~~~~~~~~dVFISy~~~D~~~~fv-~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc   85 (160)
                      .....++|||||||+++|.  .|| ..|.+.|+++|+++|+|++|+.+|+.+.++|.++|++|+++|+|+|++|+.|.||
T Consensus         6 ~~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~   83 (161)
T d1fyva_           6 ELQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWC   83 (161)
T ss_dssp             TSSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSH
T ss_pred             HcCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHH
Confidence            4456789999999999996  566 4699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--hhcCCceeeEEeccCchh
Q 045860           86 LDELLKITEC--KNREDQIFPIFYGVEPTV  113 (160)
Q Consensus        86 ~~El~~~~~~--~~~~~~iiPVf~~v~p~~  113 (160)
                      ..|+..|+++  ..+..++|||+++..|..
T Consensus        84 ~~E~~~a~~~~~~~~~~~lIpV~l~~~~~~  113 (161)
T d1fyva_          84 HYELYFAHHNLFHEGSNSLILILLEPIPQY  113 (161)
T ss_dssp             HHHHHTTSCCCSCSSCSSEEEEESSCCCGG
T ss_pred             HHHHHHHHHHHHHcCCCceeEEEEecCchh
Confidence            9999999987  556779999999755543

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-25  Score=161.02  Aligned_cols=102  Identities=24%  Similarity=0.339  Sum_probs=91.0

Q ss_pred             CCCCcccEEEecccCCCcchHHH-HHHHHHhcC--CcEEEEeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCCCChhH
Q 045860            9 ISCGKYDAFLSFRGEDTRKGFIG-YLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKAIDESRISIIVLSKNYASSTWC   85 (160)
Q Consensus         9 ~~~~~~dVFISy~~~D~~~~fv~-~L~~~L~~~--gi~v~~d~~d~~~G~~~~~~i~~~I~~S~~~ivvlS~~~~~S~wc   85 (160)
                      +..+.|||||||+++|.  .+|. .|.+.|++.  |+++|+|++|+.+|+.+.++|.++|++|+++|+|+|++|+.|.||
T Consensus         1 ~~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            35789999999999995  5564 589999874  899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--hhcCCceeeEEeccCch
Q 045860           86 LDELLKITEC--KNREDQIFPIFYGVEPT  112 (160)
Q Consensus        86 ~~El~~~~~~--~~~~~~iiPVf~~v~p~  112 (160)
                      ..|+..|+.+  ..++.++|||+++..+.
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~~  107 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIEK  107 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCch
Confidence            9999998877  66788999999975443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.82  E-value=0.24  Score=33.48  Aligned_cols=78  Identities=12%  Similarity=0.068  Sum_probs=53.6

Q ss_pred             CCcchHHHHHHHHHhcCCcEEEEeCCCCCCC--CCchHHHHHHHHhcceEEEEeec--CCCCChhHHHHHHHHHHHhhcC
Q 045860           24 DTRKGFIGYLYTALNNKGIYVFRDDKQLEKG--GSISPNLLKAIDESRISIIVLSK--NYASSTWCLDELLKITECKNRE   99 (160)
Q Consensus        24 D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G--~~~~~~i~~~I~~S~~~ivvlS~--~~~~S~wc~~El~~~~~~~~~~   99 (160)
                      |........+...|++.|+.++.=. +-...  ..|.+.-.+.|++|+.+|+++++  .-..+.-+..|+..|...   +
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~-d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al---g   90 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPT-DNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL---N   90 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTT-TTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT---T
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccc-cccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC---C
Confidence            3334567889999999999998632 22221  22334445789999999999985  234566789999999984   5


Q ss_pred             CceeeE
Q 045860          100 DQIFPI  105 (160)
Q Consensus       100 ~~iiPV  105 (160)
                      +.|+-.
T Consensus        91 KPVi~~   96 (152)
T d2f62a1          91 KMVLTF   96 (152)
T ss_dssp             CEEEEE
T ss_pred             CeEEEE
Confidence            555443

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.86  E-value=0.2  Score=30.92  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=42.1

Q ss_pred             cccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHh-cceEEEE
Q 045860           13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDE-SRISIIV   74 (160)
Q Consensus        13 ~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~-S~~~ivv   74 (160)
                      ..+|||..-++... ..+..|...|++.|+++.+|..    +..+...+..+-.. ...+|+|
T Consensus         3 ~~~V~i~~~g~~~~-~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iii   60 (97)
T d1wu7a1           3 KKSVYICRVGKINS-SIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIF   60 (97)
T ss_dssp             SCEEEEEEESSCCH-HHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEE
T ss_pred             CceEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEec
Confidence            46899998777654 6788999999999999999863    44666677766553 4444444

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.60  E-value=0.83  Score=27.60  Aligned_cols=57  Identities=19%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             cccEEEecccCCCcchHHHHHHHHHhcCCcEEEEeCCCCCCCCCchHHHHHHHHh-cceEEEE
Q 045860           13 KYDAFLSFRGEDTRKGFIGYLYTALNNKGIYVFRDDKQLEKGGSISPNLLKAIDE-SRISIIV   74 (160)
Q Consensus        13 ~~dVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~d~~~G~~~~~~i~~~I~~-S~~~ivv   74 (160)
                      ..||||.--+++. ...+..|...|++.|+++-+|.+    +..+...+..|=.. +..+|++
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iii   61 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL----QRKIKGQMKQADRLGAKFTIVI   61 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS----CCCHHHHHHHHHHTTCSEEEEE
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC----CCCHHHHHHHHHhcCCCEEEEE
Confidence            4699998655443 35688899999999999999863    44566677776554 4444444

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.35  E-value=1.3  Score=26.84  Aligned_cols=57  Identities=21%  Similarity=0.409  Sum_probs=40.5

Q ss_pred             cccEEEecccCCCcchHHHHHHHHHhcC--CcEEEEeCCCCCCCCCchHHHHHHHH-hcceEEEE
Q 045860           13 KYDAFLSFRGEDTRKGFIGYLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKAID-ESRISIIV   74 (160)
Q Consensus        13 ~~dVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~d~~~G~~~~~~i~~~I~-~S~~~ivv   74 (160)
                      ..||||..-+++. ...+..|...|+++  |+++.+|..    +..+...+..|-. ++..+|++
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~----~~~l~kq~k~A~~~~~~~~iii   62 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG----GGNFKKQFARADKWGARVAVVL   62 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS----CCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC----CCCHHHHHHHHHHhCCChhhhc
Confidence            4699998866654 45678899999876  999999863    4466677777655 45555544