Citrus Sinensis ID: 045877
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 801 | 2.2.26 [Sep-21-2011] | |||||||
| Q38834 | 852 | Disease resistance RPP13- | no | no | 0.524 | 0.492 | 0.216 | 1e-16 | |
| Q42484 | 909 | Disease resistance protei | no | no | 0.298 | 0.262 | 0.282 | 3e-07 | |
| Q9FW44 | 787 | Disease resistance protei | no | no | 0.168 | 0.171 | 0.296 | 3e-07 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.103 | 0.083 | 0.380 | 5e-07 | |
| Q9LZ25 | 811 | Probable disease resistan | no | no | 0.101 | 0.099 | 0.390 | 8e-07 | |
| Q9SZA7 | 816 | Probable disease resistan | no | no | 0.081 | 0.079 | 0.410 | 1e-06 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.250 | 0.190 | 0.240 | 1e-06 | |
| Q7KRY7 | 1851 | Protein lap4 OS=Drosophil | no | no | 0.197 | 0.085 | 0.312 | 3e-06 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.255 | 0.209 | 0.262 | 3e-06 | |
| Q9LVT1 | 623 | Putative disease resistan | no | no | 0.147 | 0.189 | 0.3 | 3e-06 |
| >sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 121/559 (21%), Positives = 218/559 (38%), Gaps = 139/559 (24%)
Query: 244 QSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILP 303
+SC+L +++PE+ VI K+ LV+ WIGEGF+ R SA ++ + + I
Sbjct: 416 KSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWR--NGRSATESGEDCFSGLTNRCLIEV 473
Query: 304 VDKKHRGVANSFRMSPLVRSAVITLAKENNFFHFDSEGIPTMNFQKYETFKRACLVYDHK 363
VDK + G + ++ +VR VI +AK+++F + EG+ + F + +HK
Sbjct: 474 VDKTYSGTIITCKIHDMVRDLVIDIAKKDSF--SNPEGLNCRHLGISGNFDEKQIKVNHK 531
Query: 364 EGSVPLRLEQSAIKLAAMELLEEKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKIK 423
LR S K E +L D K + + + + K
Sbjct: 532 -----LRGVVSTTKTG-----EVNKLNSDLAKKFTDCKYLRVLDIS-------------K 568
Query: 424 KLFNFSLS--LEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481
+F+ LS L+EI + + L +FP
Sbjct: 569 SIFDAPLSEILDEIASLQHLACLSLSNTHPLI----QFPR-------------------- 604
Query: 482 QSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACY 541
+++D+ +++I Y + LK ++ I L +LD+ C
Sbjct: 605 --SMEDLHNLQILDASYCQNLKQLQPC-----------------IVLFKKLLVLDMTNCG 645
Query: 542 NLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRW 601
+L ECF PK + L KL+VL GF R
Sbjct: 646 SL-------------------ECF-----PKGIGSLVKLEVLLGF-------KPARSNNG 674
Query: 602 CSLKDLEKLEHLRKLTININ-SEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660
C L +++ L +LRKL +++ ++ + E L +++ +L+ + ++
Sbjct: 675 CKLSEVKNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSISINC-------------- 720
Query: 661 TGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYI 720
D++ +TK H +L Q +P + PSW+ P+ L+ + I
Sbjct: 721 ---YDSYGDDLITKIDALTPPHQLH------ELSLQFYPGKSSPSWLSPHKLPMLRYMSI 771
Query: 721 RGGRLNSL-------EGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVT 773
G L + E + W ++ L L L++L +DW+ LQ+ P L + C ++
Sbjct: 772 CSGNLVKMQEPFWGNENTHWR-IEGLMLSSLSDLDMDWEVLQQSMPYLRTVTANWCPELE 830
Query: 774 LCPCD--GY--GIWEKSDL 788
+ G+ G+W K+ L
Sbjct: 831 SFAIEDVGFRGGVWMKTPL 849
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 129/283 (45%), Gaps = 44/283 (15%)
Query: 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563
+M LR+L L + I E+P I YL L L + + LP E+G L+ L HLD+
Sbjct: 556 HMPVLRVLDL-SFTSITEIPLSIKYLVELYHLSMSG-TKISVLPQELGNLRKLKHLDLQR 613
Query: 564 CFLLDGIPK-KLSLLSKLQVL------KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKL 616
L IP+ + LSKL+VL G+ + ED+ DLE LE+L L
Sbjct: 614 TQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDE---AEELGFADLEYLENLTTL 670
Query: 617 TININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTK--PEPQTGRKDNFFIKTLT- 673
I + S E L T+ F G+ +K + + F + +LT
Sbjct: 671 GITVLS----LETLKTLFEF------------GALHKHIQHLHVEECNELLYFNLPSLTN 714
Query: 674 --KFRTRVTERSQH-VESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEG 730
+ R++ +S H +E + DF+ ++ LPS + + +L NL G NS+
Sbjct: 715 HGRNLRRLSIKSCHDLEYLVTPADFE---NDWLPS-LEVLTLHSLHNLTRVWG--NSVSQ 768
Query: 731 SEWETVKVLRLKYLNELK-IDWKGLQELFPKLEYLEKFKCHKV 772
++ + + + N+LK + W +Q+L PKLE +E F C ++
Sbjct: 769 DCLRNIRCINISHCNKLKNVSW--VQKL-PKLEVIELFDCREI 808
|
Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FW44|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 442 CAMKRGRIETLFNVSEEFP---EFKYDWFSKLEKIKVLY-LGRWQS-TVDDIPHIEIEST 496
C +K ++T F++S+ FP + D L ++K ++ + S ++ + P I
Sbjct: 610 CKVKNSFVQTSFDISKIFPSLSDLTIDHCDDLLELKSIFGITSLNSLSITNCPRI----L 665
Query: 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL 556
+ K L N++ L L L + LP E+ L L+ +D+ C +L LP++ GKL SL
Sbjct: 666 ELPKNLSNVQSLERLRLYACPELISLPVEVCELPCLKYVDISQCVSLVSLPEKFGKLGSL 725
Query: 557 THLDISECFLLDGIPKKLSLLSKLQ 581
+D+ EC LL G+P ++ L L+
Sbjct: 726 EKIDMRECSLL-GLPSSVAALVSLR 749
|
Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLD 560
KN++ L LS+ + ++ELP+ ++ L +L+ LD+R CY L+ LP+E + L SLT L
Sbjct: 877 FKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELF 936
Query: 561 ISECFLLDGIPKKLSLLSKLQVLK 584
+ C +L +P+ L L+ L LK
Sbjct: 937 VEHCNMLKCLPEGLQHLTTLTSLK 960
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHL 559
K L +K L+LL L + LP EI L L+ +D+ C +L LP++IGK+K+L +
Sbjct: 693 KNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDISQCVSLSSLPEKIGKVKTLEKI 752
Query: 560 DISECFLLDGIPKKLSLLSKLQ 581
D EC L IP + LL+ L+
Sbjct: 753 DTRECS-LSSIPNSVVLLTSLR 773
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563
+ L LS+ + ELP +S L +LEIL L AC L LP EI +L L +LDIS+
Sbjct: 678 GLTSLSCLSITNCPRLGELPKNLSKLQALEILRLYACPELKTLPGEICELPGLKYLDISQ 737
Query: 564 CFLLDGIPKKLSLLSKLQ 581
C L +P+++ L KL+
Sbjct: 738 CVSLSCLPEEIGKLKKLE 755
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 19/220 (8%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDI 561
KN+ R L L + +++LP + Y+ +L+ L L C +L +LP +I L +L +LD+
Sbjct: 598 FKNISHARFLDL-SRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDL 656
Query: 562 SECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININ 621
L +P++ L LQ L F +S A D R L DL + +L ++
Sbjct: 657 IGT-KLRQMPRRFGRLKSLQTLTTFFVS--ASDGSRISELGGLHDLHGKLKIVELQRVVD 713
Query: 622 SEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTE 681
NL++ K L ++ W GS++ P + + + L R
Sbjct: 714 VADAAEANLNSK---KHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHR----- 765
Query: 682 RSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIR 721
+EKL + + + P W+ SF + + +R
Sbjct: 766 -------HIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLR 798
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 34/192 (17%)
Query: 454 NVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSL 513
N+ + PE S+L K+K L LG + ++D+P YL L + EL L
Sbjct: 162 NLLKHLPE----TISQLTKLKRLDLG--DNEIEDLP-------PYLGYLPGLHELWLDHN 208
Query: 514 QGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKK 573
Q +Q LP E+ LT L LD+ + L++LP+EI L SLT LD+++ LL+ +P
Sbjct: 209 Q----LQRLPPELGLLTKLTYLDV-SENRLEELPNEISGLVSLTDLDLAQN-LLEALPDG 262
Query: 574 LSLLSKLQVLKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLST 632
++ LS+L +LK D R +R +L + E ++ L I +E F +E ++
Sbjct: 263 IAKLSRLTILK--------LDQNRLQRLNDTLGNCENMQEL------ILTENFLSELPAS 308
Query: 633 VLAFKRLLQLKV 644
+ +L L V
Sbjct: 309 IGQMTKLNNLNV 320
|
Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior. Drosophila melanogaster (taxid: 7227) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 39/244 (15%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDI 561
+ ++ LR L L G I+ LP + L +L+ LDL C +L LP + KL SL +L +
Sbjct: 544 IGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLL 603
Query: 562 SECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININ 621
C L P ++ LL+ L+ L FVI R+ + LK+L
Sbjct: 604 DGCS-LTSTPPRIGLLTCLKSLSCFVIG-----KRKGHQLGELKNL-------------- 643
Query: 622 SEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTE 681
NL ++ +L ++K AN S K + ++ + ++ + V E
Sbjct: 644 -------NLYGSISITKLDRVKKDTDAKEANLSAKANLHS-LCLSWDLDGKHRYDSEVLE 695
Query: 682 RSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRG----------GRLNSLEGS 731
+ S L+ L+ F +LP W++ KN+ ++ IRG G L LE
Sbjct: 696 -ALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESL 754
Query: 732 EWET 735
E T
Sbjct: 755 ELHT 758
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 22/140 (15%)
Query: 442 CAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501
C + +T ++++ FP KL I + Y DD+ E+ ST
Sbjct: 445 CKINNSFDQTAIDIAQIFP--------KLTDITIDY-------CDDLA--ELPST----- 482
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDI 561
+ + L +S+ I+ELP IS L +L++L L AC L LP EI +L L ++DI
Sbjct: 483 ICGITSLNSISITNCPNIKELPKNISKLQALQLLRLYACPELKSLPVEICELPRLVYVDI 542
Query: 562 SECFLLDGIPKKLSLLSKLQ 581
S C L +P+K+ + L+
Sbjct: 543 SHCLSLSSLPEKIGNVRTLE 562
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 801 | ||||||
| 224116254 | 547 | predicted protein [Populus trichocarpa] | 0.626 | 0.917 | 0.387 | 2e-99 | |
| 449469420 | 686 | PREDICTED: putative disease resistance R | 0.709 | 0.827 | 0.377 | 3e-95 | |
| 297791181 | 738 | hypothetical protein ARALYDRAFT_494434 [ | 0.757 | 0.822 | 0.331 | 8e-88 | |
| 359475749 | 835 | PREDICTED: putative disease resistance p | 0.559 | 0.536 | 0.38 | 3e-80 | |
| 186529624 | 771 | RNI-like superfamily protein [Arabidopsi | 0.465 | 0.483 | 0.406 | 1e-75 | |
| 20453164 | 373 | AT5g45500/MFC19_17 [Arabidopsis thaliana | 0.415 | 0.892 | 0.433 | 9e-74 | |
| 255571829 | 720 | conserved hypothetical protein [Ricinus | 0.476 | 0.530 | 0.427 | 1e-73 | |
| 357125440 | 625 | PREDICTED: disease resistance RPP13-like | 0.554 | 0.710 | 0.330 | 5e-72 | |
| 255571831 | 426 | protein binding protein, putative [Ricin | 0.433 | 0.814 | 0.411 | 1e-69 | |
| 297791175 | 768 | hypothetical protein ARALYDRAFT_356455 [ | 0.418 | 0.436 | 0.417 | 3e-69 |
| >gi|224116254|ref|XP_002317252.1| predicted protein [Populus trichocarpa] gi|222860317|gb|EEE97864.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 235/607 (38%), Positives = 330/607 (54%), Gaps = 105/607 (17%)
Query: 184 LNLKSKIPPVNSSSSDDSDAQQRRRINQSKDLPNMADKTRFKEHDFFIEFKKIFQSLG-N 242
LNL +++ + S DS +N ++ + F+ F++FK+ + SL
Sbjct: 13 LNLANEVLKSQNVSGGDS-------LNLIDEILKIRGNKAFEGCSSFVDFKERYSSLDLR 65
Query: 243 DQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFIL 302
D+ CLLCF+VFPEN+V+KKRLL+ WW+GEGF+ ++ + E+ AD +L++F EKGF+
Sbjct: 66 DKLCLLCFSVFPENSVVKKRLLMYWWVGEGFIDPKVDAD-KPEEVADGILKKFLEKGFVE 124
Query: 303 PVDKKHRGVANSFRMSPLVRSAVITLAKENNFFHFDSEGIPTMNFQKYETFKRACLVYDH 362
P KK R V FRM L+R AVI +A++ FFHFDS G PT NF T +RACL+
Sbjct: 125 PEIKKRRLVG--FRMHSLIRYAVIFVAEKVGFFHFDSMGNPTGNFS---TSQRACLI--- 176
Query: 363 KEGSVPLRLEQSAIKLAAMELLEEKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKI 422
+ GE + AL + KPE +
Sbjct: 177 -------------------------KTGEKYSRQ-------ALLDLESKPET-------L 197
Query: 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ 482
LFN V++ +P+ +WFS++ I VL LGR Q
Sbjct: 198 HALFN---------------------------VNDPYPDLNTEWFSRMRNINVLCLGRQQ 230
Query: 483 STVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYN 542
H+E+EST++LKGL+NMK L+ LSLQG+S I ELP I L +L+ILDL +C+N
Sbjct: 231 H------HVEVESTEFLKGLRNMKHLKFLSLQGISRINELPETIQKLVNLKILDLNSCHN 284
Query: 543 LDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWC 602
L+ +P+ I L+ LTHLDISEC++LD +PK L L++LQVLKGFVIS + + K
Sbjct: 285 LEAIPENIVSLQKLTHLDISECYMLDYMPKGLGSLTELQVLKGFVIS-----NLKIKNAG 339
Query: 603 SLKDLEKLEHLRKLTININSEKF-QTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQT 661
+L DL L LRKL+I + F + ++L + L +L + WGG S K +
Sbjct: 340 TLDDLRGLPKLRKLSIYTTKKDFPRVKDLKALRHITALQKLTIEWGGKSGVKK-----EE 394
Query: 662 GRKDNFFIKTLTKFRT-RVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYI 720
R D+ + FR + + L KLD QC+P+ K P W+ P KNL+ LYI
Sbjct: 395 IRNDSRGLTRSNAFRRENIPAAIPDLPEHLVKLDLQCYPETKAPEWLLPLRLKNLQKLYI 454
Query: 721 RGGRLNSL----EGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCP 776
RGG L++L G+ VK+LRLK+L ELK+DW+ L + FP L YLEKFKC K+T P
Sbjct: 455 RGGHLSALGQAQGGNHKWNVKILRLKFLKELKMDWRVLHDAFPHLIYLEKFKCPKLTFFP 514
Query: 777 CDGYGIW 783
CDG G+W
Sbjct: 515 CDGTGVW 521
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469420|ref|XP_004152418.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 250/662 (37%), Positives = 349/662 (52%), Gaps = 94/662 (14%)
Query: 145 IQDLKDDLELVL---TSQATGSKSVQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDDS 201
IQ ++ +L++V+ GS Q++ +D + I Q LK +IP S +
Sbjct: 97 IQSIETNLDIVIKRVNDAPPGSPLTQKIG--EDYLDAIIQDVRTLKFRIPSYRKLSLAKT 154
Query: 202 DAQQRRRINQSKD-----LPNMADKTRFKEHDFFIEFKKIFQSLGND--QSCLLCFAVFP 254
A R + + LPN+ F E F E +KI+ +D + C L FAVFP
Sbjct: 155 VAHSGGRGSHALTPIEFVLPNLQGDEVFDESPAFKEVQKIYYEFNDDIFRKCFLYFAVFP 214
Query: 255 ENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVANS 314
EN V+KK+ L WWIGEG L + G+++ E A +L +F EKG I+PV ++ + V
Sbjct: 215 ENVVLKKQFLTYWWIGEGILDVKGTGDSNLEDEAGGILLKFVEKGLIVPVKEEQKKVKKK 274
Query: 315 FRMSPLVRSAVITLAKENNFFHFDSEGIPTMNFQKYETF--KRACLVYDHKEGSVPLRLE 372
FRM PLVR A I LA EN F +FD G PT Y +F R LV K G
Sbjct: 275 FRMPPLVRFASIKLAIENKFLNFDDWGNPT-----YRSFGCDRILLV---KGGG------ 320
Query: 373 QSAIKLAAMELLEEKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKIKKLFNFSLSL 432
F+ E P + EK+ +FN S
Sbjct: 321 ---------------------------------FHPPEAPTKYQNLEEKMVTIFNVS--- 344
Query: 433 EEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPH-I 491
+ + A + K+G ++ E W KLE +KVLYLGRWQS VDD H I
Sbjct: 345 QPFPDSALEWLAKKGDVDMRTTKVVE-------WLLKLEHLKVLYLGRWQSEVDDEEHVI 397
Query: 492 EIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551
E+ S ++L+GL+ MK+LRLLSLQG+ I ELP+ I+ L L +LDL+ CYNL+KLP IG
Sbjct: 398 EVLSLEFLEGLRKMKKLRLLSLQGIFWINELPNSINMLCDLRVLDLKCCYNLEKLPGGIG 457
Query: 552 KLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLE 611
LKSLTHLD++ C++L+G+PK +S L++L+VLKGFV SL DL+ L+
Sbjct: 458 SLKSLTHLDVTGCYMLNGMPKSISRLTQLRVLKGFVTGKS-----------SLNDLKGLK 506
Query: 612 HLRKLTININSEKFQTENLSTVL----AFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNF 667
LRKL+IN NS F VL L L + W +A +P + +
Sbjct: 507 KLRKLSINTNSPGFPDAKDLRVLRELGEHGELRNLSIMW---AAEGLKFDQPPSKTEKGT 563
Query: 668 FIKTLTKFRTRVT----ERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGG 723
FI+ LTK +++T + + + LEKL+ +C ++ LP+W++P + +LK LYIRGG
Sbjct: 564 FIRELTKQISKLTAQPNDETSELPKNLEKLELECLREKNLPNWLNPDNLTSLKKLYIRGG 623
Query: 724 RLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIW 783
L +L +WE +V+RLKY+ ELKI W+ LQ FPKL YL+K KC +VTL PCD G+W
Sbjct: 624 SLETLGNKKWEAAEVVRLKYMTELKIKWRELQNNFPKLSYLQKVKCPRVTLFPCDASGVW 683
Query: 784 EK 785
K
Sbjct: 684 IK 685
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791181|ref|XP_002863475.1| hypothetical protein ARALYDRAFT_494434 [Arabidopsis lyrata subsp. lyrata] gi|297309310|gb|EFH39734.1| hypothetical protein ARALYDRAFT_494434 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 238/718 (33%), Positives = 370/718 (51%), Gaps = 111/718 (15%)
Query: 115 HPLNQLDHDLIYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQATGSKSVQE---VET 171
H + +L +L ++ + +L+ + + LEL+L G K +
Sbjct: 83 HHIPKLQRNLRLLKEDVVKLQDLRTEVAEEVLKHIRPLELLLDKVEKGEKDPSKPPLTLG 142
Query: 172 LQDEIRRISQKFLNLKSKIP--PVNSSSSDDSDAQQRRRINQSKD---LPNM-ADKTRFK 225
++ ++ I++K NL ++P P ++ SDA N K LP + A+K K
Sbjct: 143 MKKDLDDINKKIFNLMCQVPLLPNKRKNAKGSDADDGEGDNNGKGIVCLPGIHANKEDLK 202
Query: 226 EHDFFIEFKKIFQSLGNDQS-CLLCFAVFPENAVIKKRLLVNWWIGEGFLKER-IQGENS 283
F F+ L N Q CLL F+VFPEN + + +L+ WW+GEG L + I E
Sbjct: 203 RRAVFRYVLGEFEELSNQQKFCLLSFSVFPENQEVNRTMLMYWWMGEGILSSKDISSEKG 262
Query: 284 AEKAAD---KLLREFEEKGFILPVDKKHRGVANSFRMSPLVRSAVITLAKENNFFH-FDS 339
K D +L +F+++ I PV+ K + NS++M+P V S+V+ ++KE F +D
Sbjct: 263 ILKPEDVVKDILDDFKDRNLIEPVEIKRKEKPNSYKMAPFVHSSVVLISKEIGLFDMYDK 322
Query: 340 EGIPTMNFQKYETFKRACLVYDHKEGSVPLRLEQSAIKLAAMELLEEKRLGEDNQKAVQF 399
+ PTM K + CLV EGS + E A K+A ++ +E
Sbjct: 323 KEKPTM---KQSGLHKVCLV----EGSSS-QQEAKAKKMADVDQIE-------------- 360
Query: 400 AESMALFNFGEK-PEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEE 458
+FN E+ P+ F F E+ + K L
Sbjct: 361 ----TVFNISERFPD------------FTFKWFFEDKPTRNK-----------LTLSKAT 393
Query: 459 FPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSG 518
+P K+KVLYLGRW+ T HIE+E+ + +K LK+M +L+LLS QG+S
Sbjct: 394 YP-----------KLKVLYLGRWERTAKR--HIEVENPELMKNLKHMIKLKLLSFQGISR 440
Query: 519 IQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLS 578
I+ L + + L L ILDLRACYNL+KLPD+I LK+L +LDI++C+++D +PK+LS L
Sbjct: 441 IERLDNAVCKLRELIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRMPKRLSWLD 500
Query: 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL-STVLAFK 637
L+VLKGFV+SD +D+ C+L +L +L+ LRKL+I+IN E+F ++ V FK
Sbjct: 501 NLEVLKGFVVSDAVDDE----TVCTLAELVELKKLRKLSISINKEEFSIVDVFVAVKNFK 556
Query: 638 RLLQLKVSWGGGS------------ANKSTKPEPQ---------TGRKDNFFIKTLTKFR 676
+L +LKV+WGG + ++ KP+ + +K + T FR
Sbjct: 557 KLEKLKVAWGGINTHPQDKGVDGEKGDRKVKPKEEENDNAIAAADNKKPTILERAATMFR 616
Query: 677 TRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETV 736
+ + L+KLD QCFP + LP W+ P + +N++ LYI+GG + G V
Sbjct: 617 KEKGPKDPELPETLKKLDLQCFPGKLLPEWLEPDNLRNVEKLYIKGGTKLTGFGKSLPIV 676
Query: 737 K------VLRLKYLNELKIDWKGL-QELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSD 787
K VLRLK+L +LK++W+ L + FP+L++LEK++C +V+LCPCDG GIW K +
Sbjct: 677 KTKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPE 734
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475749|ref|XP_002269771.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 209/550 (38%), Positives = 281/550 (51%), Gaps = 102/550 (18%)
Query: 246 CLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVD 305
CLLCFA+FPE A+I KR L+ WWIGEGF+ R E +AE+ ++ ++ + G I P
Sbjct: 162 CLLCFAIFPEKAIIMKRQLIYWWIGEGFV--RKTKEKTAEEMGEEYFQKLIDMGLIYPKY 219
Query: 306 KKHRGVANSFRMSPLVRSAVITLAKENNFFHFDSEGIPTMNFQKYETFKRACLVYDHKEG 365
KK V +S M P +R VIT+AK+ FF D G PT + +R C D
Sbjct: 220 KKANPVVDSCTMHPWIRRMVITVAKKAEFFDLDRRGAPTAVSSQS---RRICFAKD---- 272
Query: 366 SVPLRLEQSAIKLAAMELLEEKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKIKKL 425
L + Q+ E ED Q S+ FN +K + V
Sbjct: 273 ---LEINQTVTPPNTDE-------SEDQQT------SLPWFNRDQKYQLPFV-------- 308
Query: 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTV 485
TLFN+ +++ + K +WFSKL ++ VL LGRWQ
Sbjct: 309 -------------------------TLFNIDQKYVDIKEEWFSKLNRVSVLQLGRWQHAA 343
Query: 486 DDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545
D HIE+E+ D+LK L + L+ LSL+GMS I ELPS + L L+ILDLRAC+NL++
Sbjct: 344 DH--HIEVENQDFLKHLGALTHLKYLSLRGMSRITELPSSVVDLVLLQILDLRACHNLER 401
Query: 546 LPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLK 605
LP +I L+ LTHLD+SEC+LL+ +PK L L LQVLKGFVI E RR R L
Sbjct: 402 LPPDISSLRKLTHLDLSECYLLESMPKGLDKLFSLQVLKGFVI----ETSRR--RSGKLV 455
Query: 606 DLEKLEHLRKLTININSEKF-QTENLSTVLAFKRLLQLKVSWG-------GGSANKSTKP 657
DL +L+ LRKL+I I S+ Q E L ++ + L L ++W GSA +
Sbjct: 456 DLSQLKKLRKLSIYIGSQDLAQQEELHSLKDIQNLRVLTITWKEVAEVKPKGSAQSEEEN 515
Query: 658 EPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKN 717
E G+ +F SKLEKLD +C P + P W+ P NLK+
Sbjct: 516 ERHAGKSFSF-------------------PSKLEKLDLRCIPFKNQPEWLKPSLLFNLKS 556
Query: 718 LYIRGGRLNSL--EGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLC 775
LYIRGG+L+ L E ++ VK+LRLKYLN + D K L + FP L+Y EK K
Sbjct: 557 LYIRGGKLDGLATETNQKWKVKILRLKYLNAFQTDDKILLKDFPDLKYFEKINTLK---- 612
Query: 776 PCDGYGIWEK 785
G +W K
Sbjct: 613 ---GDEVWGK 619
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186529624|ref|NP_199363.3| RNI-like superfamily protein [Arabidopsis thaliana] gi|334188211|ref|NP_001190474.1| RNI-like superfamily protein [Arabidopsis thaliana] gi|9758740|dbj|BAB09178.1| unnamed protein product [Arabidopsis thaliana] gi|332007877|gb|AED95260.1| RNI-like superfamily protein [Arabidopsis thaliana] gi|332007878|gb|AED95261.1| RNI-like superfamily protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 168/413 (40%), Positives = 246/413 (59%), Gaps = 40/413 (9%)
Query: 405 LFNFGEKPEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKY 464
+++ +KP K K+ + S E K +D IET+FNVSE FP+F +
Sbjct: 365 MYDIKDKPVMKKSGMHKVCLVEGSSSQQEAKAKKMEDV----DHIETVFNVSERFPDFTF 420
Query: 465 DWFSK--------------LEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRL 510
WFS+ +K+KV YLGRW+ T HIE+E+ + +K LK M +L+L
Sbjct: 421 KWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKR--HIEVENPELMKNLKRMIKLKL 478
Query: 511 LSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGI 570
LS QG+S I+ L + L L ILDLRACYNL+KLPD+I LK+L +LDI++C+++D +
Sbjct: 479 LSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRM 538
Query: 571 PKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL 630
PK+LS L L+VLKGFV+SD +++ C+L +L L+ LRKL+I+IN E F +++
Sbjct: 539 PKRLSWLDNLEVLKGFVVSDATDEE----TVCTLAELVHLKKLRKLSISINKENFSIDDV 594
Query: 631 -STVLAFKRLLQLKVSWGG------GSANKSTKPEPQTGRKDNFFI--KTLTKFRTRVTE 681
V +FK+L +LKV+WGG G S K + K+N I + T FR
Sbjct: 595 FVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDP 654
Query: 682 RSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWET------ 735
+ + L+KLD QCFP E LP W+ P + N++ LYI+GG + G +
Sbjct: 655 TAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCK 714
Query: 736 VKVLRLKYLNELKIDWKGL-QELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSD 787
V VLRLK+L +LK++W+ L + FP+L++LEK++C +V+LCPCDG GIW K +
Sbjct: 715 VTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPE 767
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20453164|gb|AAM19823.1| AT5g45500/MFC19_17 [Arabidopsis thaliana] gi|23308327|gb|AAN18133.1| At5g45500/MFC19_17 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 285 bits (728), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 160/369 (43%), Positives = 231/369 (62%), Gaps = 36/369 (9%)
Query: 449 IETLFNVSEEFPEFKYDWFSK--------------LEKIKVLYLGRWQSTVDDIPHIEIE 494
IET+FNVSE FP+F + WFS+ +K+KV YLGRW+ T HIE+E
Sbjct: 7 IETVFNVSERFPDFTFKWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKR--HIEVE 64
Query: 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLK 554
+ + +K LK M +L+LLS QG+S I+ L + L L ILDLRACYNL+KLPD+I LK
Sbjct: 65 NPELMKNLKRMIKLKLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLK 124
Query: 555 SLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLR 614
+L +LDI++C+++D +PK+LS L L+VLKGFV+SD +++ C+L +L L+ LR
Sbjct: 125 ALIYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDEETV----CTLAELVHLKKLR 180
Query: 615 KLTININSEKFQTENL-STVLAFKRLLQLKVSWGG------GSANKSTKPEPQTGRKDNF 667
KL+I+IN E F +++ V +FK+L +LKV+WGG G S K + K+N
Sbjct: 181 KLSISINKENFSIDDVFVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENI 240
Query: 668 FI--KTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRL 725
I + T FR + + L+KLD QCFP E LP W+ P + N++ LYI+GG
Sbjct: 241 GILERAATMFRKEKDPTAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIK 300
Query: 726 NSLEGSEWET------VKVLRLKYLNELKIDWKGL-QELFPKLEYLEKFKCHKVTLCPCD 778
+ G + V VLRLK+L +LK++W+ L + FP+L++LEK++C +V+LCPCD
Sbjct: 301 LTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCD 360
Query: 779 GYGIWEKSD 787
G GIW K +
Sbjct: 361 GIGIWRKPE 369
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571829|ref|XP_002526857.1| conserved hypothetical protein [Ricinus communis] gi|223533756|gb|EEF35488.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 177/414 (42%), Positives = 239/414 (57%), Gaps = 32/414 (7%)
Query: 396 AVQFAESMALFNFGEKPEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRG--RIETLF 453
V AE + FNF +F + ++ +E E ++D M ++ TLF
Sbjct: 293 VVFLAEKLGFFNFNSTWNPTG-DFLSCGR----AIMVENAEGNSRDIIMSLNPEKLITLF 347
Query: 454 NVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSL 513
N+S+ FP+FK WF K+ +KVL LGR D HIE+E T +LKGLKNM+ L LSL
Sbjct: 348 NISDRFPDFKVKWFLKMRNVKVLCLGR---CADPTSHIEVEDTKFLKGLKNMRHLTSLSL 404
Query: 514 QGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKK 573
QG+S I+ LP++++ L +L LDL+AC+NL+ LPD IG L++LTHLDISEC+LLD +PK
Sbjct: 405 QGVSRIERLPNDVTKLINLRTLDLKACHNLEALPDSIGSLRNLTHLDISECYLLDRMPKG 464
Query: 574 LSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT-ENLST 632
+ LL +LQVLKGFV++ D++ K SL DL +L +LRKL+I+ F T + L
Sbjct: 465 IELLWQLQVLKGFVVT-----DKKMKGAGSLSDLSRLSYLRKLSISTTKRDFPTAKELDA 519
Query: 633 VLAFKRLLQLKVSWGGGS-ANKSTKPEPQTG--RKDNFFIKT--LTKFRTRVTERSQHVE 687
+ K L +L + W G S A + T+P G R + F K L + T V E S
Sbjct: 520 LQDCKSLQKLTIIWAGTSDAKQLTRPSALKGLSRSNAFGRKNDQLNRALTLVNEESIMAL 579
Query: 688 S-----KLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSL-----EGSEWETVK 737
S LEKLD Q FP + PSW+ P K L+ LYI GG L L EG +W VK
Sbjct: 580 SPKLPKTLEKLDLQFFPGTEAPSWLMPSKLKYLEKLYISGGNLQGLNQAEDEGHKWN-VK 638
Query: 738 VLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINL 791
+L LK L EL + WK LQ+ FPKL YLEK C +T PC+ G+W+ L+ L
Sbjct: 639 ILCLKSLPELSMHWKELQDAFPKLVYLEKDNCPNLTFFPCEENGVWQNRKLLAL 692
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357125440|ref|XP_003564402.1| PREDICTED: disease resistance RPP13-like protein 4-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 180/545 (33%), Positives = 279/545 (51%), Gaps = 101/545 (18%)
Query: 246 CLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVD 305
CLLCF++FPEN++I KR +++WWIGEG ++ +AE I PV
Sbjct: 173 CLLCFSIFPENSIISKRAMIHWWIGEGLVEA--TKSQTAEDIGKDCFERLITVEMIEPVR 230
Query: 306 KKHRGVANSFRMSPLVRSAVITLAKENNFFHFDSEGIPTMNFQKYETFKRACLVYDHKEG 365
K G N ++ P +R +IT+A++ F FDS+G T F RACLV +H +
Sbjct: 231 HKRIGSVNQCKLHPWIRRMLITVARQERFVEFDSDGNATWGFSGTH---RACLVGEHIQV 287
Query: 366 --SVPLRLEQSAIKLAAMELLEEKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKIK 423
+ PLR NQ + + +FN E + ++F+K
Sbjct: 288 TETGPLR----------------------NQSNPDYL--LTIFNVNE----QYLQFDK-- 317
Query: 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQS 483
N+ + L +IE ++ GR +L+
Sbjct: 318 ---NWFMDLRKIE------VLQLGRWHSLYR----------------------------- 339
Query: 484 TVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNL 543
HIE++ST+YL+GL++ K+L+ L L+G+S + ELP+ + LT+L ILDL AC+NL
Sbjct: 340 -----HHIEVDSTEYLEGLQSSKQLKYLCLRGISRVTELPASVGALTNLRILDLHACHNL 394
Query: 544 DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS 603
++L + I L+ LTHLD+SEC+LL+G+P+ + LL++LQVLKGFVI + C
Sbjct: 395 ERLTESITSLQLLTHLDVSECYLLEGMPRGIGLLAELQVLKGFVIGGSIGNSN-----CR 449
Query: 604 LKDLEKLEHLRKLTININSEKFQTEN-LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662
+ +L +L+ L+KL+I I S+ TE+ L+ V K L L ++W + K G
Sbjct: 450 VAELVRLDKLKKLSIYIGSKVLVTEDELNEVENIKALRVLTITWAVLLSKKG------AG 503
Query: 663 RKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRG 722
++D+ LT S + LEKLD +CFP +P W+ L+ LY G
Sbjct: 504 QQDSAATTLLT---------SLSLPPHLEKLDLRCFPGVDMPVWLILGRRLRLRRLYFTG 554
Query: 723 GRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGI 782
G L++ S V++LRLK+LN+L ++W ++E+FPKL +LE F+C ++ PCD G+
Sbjct: 555 GMLHTFGESTLWNVEILRLKFLNDLVLEWTQVREMFPKLTFLEVFQCSRIKSFPCDKDGV 614
Query: 783 WEKSD 787
W D
Sbjct: 615 WMSCD 619
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571831|ref|XP_002526858.1| protein binding protein, putative [Ricinus communis] gi|223533757|gb|EEF35489.1| protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/379 (41%), Positives = 221/379 (58%), Gaps = 32/379 (8%)
Query: 432 LEEIENKAKDCAMKRG--RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIP 489
+E E ++D M ++ TL N+S+ FP+ + WF K+ IKVL LGRW+ +
Sbjct: 40 VENEEGNSRDMVMSLNPEKLITLINISDRFPDLEVKWFLKMRNIKVLCLGRWEE--NTTS 97
Query: 490 HIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549
HIE+E T +L GLKNMK L LSLQG+S + LP ++ L +L LDL+AC+NL+ LPD
Sbjct: 98 HIEVEDTKFLNGLKNMKHLEFLSLQGVSRVCRLPDNVTKLINLRTLDLKACHNLEALPDS 157
Query: 550 IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEK 609
IG L++L HLDISEC+LLD +PK + LLS+L+VLKGFV++ D++ + S+ DL +
Sbjct: 158 IGSLRNLAHLDISECYLLDRMPKGIELLSQLEVLKGFVVT-----DKKMRGAGSISDLSR 212
Query: 610 LEHLRKLTININSEKFQT-ENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQT------- 661
L LRKL+IN F T E L + L +L + W G S KP ++
Sbjct: 213 LLQLRKLSINATKRDFPTAEELDALQGCISLQKLTIVWAGTS---DAKPVVRSSGLKRLN 269
Query: 662 -----GRKDNFFIKTLTKF-RTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNL 715
RK+N + T R + + L+KLD QCFP+ + PSW+ P ++L
Sbjct: 270 RSFAFARKNNRLNRASTVIGRESMASGGPKLPVHLKKLDLQCFPETEAPSWLMPSKLESL 329
Query: 716 KNLYIRGGRLNSL-----EGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCH 770
+ LYIRGG+L L EG +W V +LRLK+ EL + W+ +Q FP+L YLEK C
Sbjct: 330 EKLYIRGGKLQFLNEAGDEGPKW-NVMILRLKFSTELSMHWREVQSTFPELIYLEKVDCP 388
Query: 771 KVTLCPCDGYGIWEKSDLI 789
+T PCD GIW S+++
Sbjct: 389 NLTFFPCDENGIWLNSEML 407
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791175|ref|XP_002863472.1| hypothetical protein ARALYDRAFT_356455 [Arabidopsis lyrata subsp. lyrata] gi|297309307|gb|EFH39731.1| hypothetical protein ARALYDRAFT_356455 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/357 (41%), Positives = 222/357 (62%), Gaps = 22/357 (6%)
Query: 439 AKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498
AK AMK ++T+FN SE FP+F + WF ++ I+VLYLGRW+ + HIE+EST++
Sbjct: 412 AKTSAMKPKTLQTVFNSSERFPDFTFKWFPLMDSIRVLYLGRWERMAE--RHIEVESTEF 469
Query: 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTH 558
LK +K++K LRL S QG+SGI+++ + I L L ILDLRACY+L LP++IG L++L +
Sbjct: 470 LKNMKSLKNLRLASFQGISGIKKIDNSICALQKLMILDLRACYDLQVLPNDIGSLENLIY 529
Query: 559 LDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTI 618
LD+SEC LD +P + LS LQVLKGFVIS ++D+ C++K L +LRKL+I
Sbjct: 530 LDVSECLKLDCMPDRFEKLSGLQVLKGFVIS-QSDDEHN----CAVK---HLVNLRKLSI 581
Query: 619 NINSEKFQTENL-STVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRT 677
I + +F+ ENL ++ K+L L +W + E K + TK
Sbjct: 582 TIKNYRFKAENLIESLRDLKQLESLTFAWRARFPVDDRRGEETKEAKLLMGMGNQTKKWG 641
Query: 678 RVTERSQHVE------SKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGS 731
++ Q ++ L+KL+ +CFP+ + PSW++P K LK L I+GG+L+ +
Sbjct: 642 IRWQKDQSIDDTYKFPDSLKKLELECFPETEPPSWLNPKDLKELKRLSIKGGKLSRMSDE 701
Query: 732 EWET-----VKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIW 783
T V++LRLKYL+E K++W+ L++LFPK+ LEK+KC K+ CP DG G+W
Sbjct: 702 SRNTEDKWAVEILRLKYLHEFKVEWRDLKDLFPKMTLLEKYKCPKIAFCPTDGNGVW 758
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 801 | ||||||
| TAIR|locus:2163578 | 771 | AT5G45500 "AT5G45500" [Arabido | 0.465 | 0.483 | 0.401 | 1.1e-69 | |
| TAIR|locus:2163593 | 1167 | AT5G45520 "AT5G45520" [Arabido | 0.322 | 0.221 | 0.358 | 7.7e-63 | |
| TAIR|locus:2078012 | 852 | ZAR1 "HOPZ-ACTIVATED RESISTANC | 0.144 | 0.136 | 0.308 | 7.7e-15 | |
| TAIR|locus:2201986 | 885 | RFL1 "AT1G12210" [Arabidopsis | 0.136 | 0.123 | 0.296 | 1e-09 | |
| TAIR|locus:2171579 | 843 | AT5G47250 [Arabidopsis thalian | 0.302 | 0.287 | 0.276 | 5.2e-08 | |
| TAIR|locus:2031366 | 898 | AT1G63350 "AT1G63350" [Arabido | 0.337 | 0.300 | 0.273 | 8.9e-08 | |
| TAIR|locus:2034765 | 884 | AT1G12290 [Arabidopsis thalian | 0.325 | 0.295 | 0.256 | 1.7e-07 | |
| TAIR|locus:2100182 | 1007 | AT3G44400 [Arabidopsis thalian | 0.200 | 0.159 | 0.303 | 3.6e-07 | |
| TAIR|locus:2006932 | 787 | ADR1 "ACTIVATED DISEASE RESIST | 0.156 | 0.158 | 0.303 | 1.1e-06 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.209 | 0.160 | 0.276 | 2.7e-06 |
| TAIR|locus:2163578 AT5G45500 "AT5G45500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 166/413 (40%), Positives = 240/413 (58%)
Query: 405 LFNFGEKPEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKY 464
+++ +KP K K+ + S E K +D IET+FNVSE FP+F +
Sbjct: 365 MYDIKDKPVMKKSGMHKVCLVEGSSSQQEAKAKKMEDV----DHIETVFNVSERFPDFTF 420
Query: 465 DWFS-------KL-------EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRL 510
WFS KL +K+KV YLGRW+ T HIE+E+ + +K LK M +L+L
Sbjct: 421 KWFSEDKPTRNKLTLSKVTYQKLKVFYLGRWERTAKR--HIEVENPELMKNLKRMIKLKL 478
Query: 511 LSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGI 570
LS QG+S I+ L + L L ILDLRACYNL+KLPD+I LK+L +LDI++C+++D +
Sbjct: 479 LSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALIYLDITDCYMIDRM 538
Query: 571 PXXXXXXXXXXXXXGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL 630
P GFV+SD A D+ + C+L +L L+ LRKL+I+IN E F +++
Sbjct: 539 PKRLSWLDNLEVLKGFVVSD-ATDE---ETVCTLAELVHLKKLRKLSISINKENFSIDDV 594
Query: 631 ST-VLAFKRLLQLKVSWGG------GSANKSTKPEPQTGRKDNFFI--KTLTKFRTRVTE 681
V +FK+L +LKV+WGG G S K + K+N I + T FR
Sbjct: 595 FVAVKSFKKLEKLKVAWGGINTHPQGKGVDSEKGDENVKPKENIGILERAATMFRKEKDP 654
Query: 682 RSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGG-RLN----SLEGSEWET- 735
+ + L+KLD QCFP E LP W+ P + N++ LYI+GG +L SL +
Sbjct: 655 TAPELPKTLKKLDLQCFPGEHLPEWLEPDNLLNVEKLYIKGGIKLTGFGKSLPSQNSKCK 714
Query: 736 VKVLRLKYLNELKIDWKGLQE-LFPKLEYLEKFKCHKVTLCPCDGYGIWEKSD 787
V VLRLK+L +LK++W+ L + FP+L++LEK++C +V+LCPCDG GIW K +
Sbjct: 715 VTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQCPQVSLCPCDGIGIWRKPE 767
|
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| TAIR|locus:2163593 AT5G45520 "AT5G45520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 7.7e-63, Sum P(2) = 7.7e-63
Identities = 98/273 (35%), Positives = 155/273 (56%)
Query: 397 VQFAESMALFNFGEKPEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVS 456
+ A+ M LF K + ++ KK+ S + AK M+ ++T+FN S
Sbjct: 309 IYLAKEMDLFELYNKNGKLIMKKSSKKKVCLVKGS--SLLRDAKTSVMEPKTLQTVFNSS 366
Query: 457 EEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGM 516
E +P+F + WF ++ ++VLYLGRW+ T HIE+EST++LK +K++K LRL S QG+
Sbjct: 367 ERYPDFTFKWFPLMDSLRVLYLGRWEQTAKR--HIEVESTEFLKNMKSLKNLRLASFQGI 424
Query: 517 SGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPXXXXX 576
S I+ L + I L L ILDL+ACYNL+ LP +IG + L +LD+SEC++LD +P
Sbjct: 425 SRIERLENSICALPELVILDLKACYNLEVLPSDIGLFEKLIYLDVSECYMLDRMPKGIAK 484
Query: 577 XXXXXXXXGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL-STVLA 635
GFVIS+ ++ C++K L +LRKL+I +N F+ E+L ++
Sbjct: 485 LSRLQVLKGFVISESDHENN-----CAVKHLV---NLRKLSITVNKYSFKVESLMESLTG 536
Query: 636 FKRLLQLKVSWGG-GSANKSTKPEPQTG-RKDN 666
+ L LK++WG N++ + T +K+N
Sbjct: 537 LQGLESLKIAWGACEEPNEAVESRETTNEKKEN 569
|
|
| TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 144 (55.7 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 37/120 (30%), Positives = 63/120 (52%)
Query: 244 QSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILP 303
+SC+L +++PE+ VI K+ LV+ WIGEGF+ R G ++ E D + I
Sbjct: 416 KSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWR-NGRSATESGED-CFSGLTNRCLIEV 473
Query: 304 VDKKHRGVANSFRMSPLVRSAVITLAKENNFFHFDSEGIPTMNFQKYETFKRACLVYDHK 363
VDK + G + ++ +VR VI +AK+++F + EG+ + F + +HK
Sbjct: 474 VDKTYSGTIITCKIHDMVRDLVIDIAKKDSFSN--PEGLNCRHLGISGNFDEKQIKVNHK 531
|
|
| TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 35/118 (29%), Positives = 53/118 (44%)
Query: 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISEC 564
M L +L L + ELP EIS L SL+ LDL Y +++LP + +L+ L HL +
Sbjct: 562 MPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTY-IERLPHGLHELRKLVHLKLERT 620
Query: 565 FLLDGIPXXXXXXXXXXXXXGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS 622
L+ I D + +K+L+ LEHL +T +I+S
Sbjct: 621 RRLESISGISYLSSLRTL--------RLRDSKTTLDTGLMKELQLLEHLELITTDISS 670
|
|
| TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 79/286 (27%), Positives = 124/286 (43%)
Query: 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISEC 564
M L +L L I ELP IS L SL +L+L ++ LP+ +G L L HL++
Sbjct: 557 MSTLVVLDLSWNFQITELPKGISALVSLRLLNLSGT-SIKHLPEGLGVLSKLIHLNLEST 615
Query: 565 FLLDGIPXXXXXXXXXXXXXGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624
L + F S A D C LK LE+L+ L+ LT+ +N++
Sbjct: 616 SNLRSVGLISELQKLQVLR--FYGSAAALD------CCLLKILEQLKGLQLLTVTVNNDS 667
Query: 625 FQTENL-STVLAFKR----LLQLKVSWGG-GSANKSTKPE------PQTG------RKDN 666
E L ST LA L LKVS+ G+ + K E ++G R+D
Sbjct: 668 VLEEFLGSTRLAGMTQGIYLEGLKVSFAAIGTLSSLHKLEMVNCDITESGTEWEGKRRDQ 727
Query: 667 FFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGG-RL 725
+ T + + +T + + + C + L +W+ Y+ NL++L + ++
Sbjct: 728 YSPSTSS---SEITPSNPWFKDLSAVVINSCIHLKDL-TWLM-YA-ANLESLSVESSPKM 781
Query: 726 NSLEGSE---------WETVKVLRLKYLNELKIDWKGLQELFPKLE 762
L E ++ ++VLRL YL EL + G Q FPKL+
Sbjct: 782 TELINKEKAQGVGVDPFQELQVLRLHYLKELGSIY-GSQVSFPKLK 826
|
|
| TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 84/307 (27%), Positives = 130/307 (42%)
Query: 490 HIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549
H+E S+++ +M +L +L L G + ELP+ IS L SL+ L+L + + LP
Sbjct: 548 HLEKISSEFFN---SMPKLAVLDLSGNYYLSELPNGISELVSLQYLNLSST-GIRHLPKG 603
Query: 550 IGKLKSLTHLDISECFLLDG-IPXXXXXXXXXXXXXGFVISDHAEDDRRWKRWCSLKDLE 608
+ +LK L HL + L + G S +A D ++K+LE
Sbjct: 604 LQELKKLIHLYLERTSQLGSMVGISCLHNLKVLKLSG---SSYAWD------LDTVKELE 654
Query: 609 KLEHLRKLTININSEKFQTEN-LSTVLAFKRLLQLKVSWGGG-SANKSTKPEPQT-GRKD 665
LEHL LT I+ T+ LS+ + LK+S + N S P T R
Sbjct: 655 ALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQ 714
Query: 666 NFFIKTL--TKFRT-RVTERSQHVE------SKLEKLDFQCF-PDEKLPSWVHPYSFKNL 715
F I+ ++ + R+ S +E +L +L F F P+ K +H S L
Sbjct: 715 EFTIEHCHTSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKR---LHVVSSNQL 771
Query: 716 KNLYIRGGRLNSLEGS---EWETVKVLRLKYLNELK-IDWKGLQELFPKLEYLEKFKCHK 771
+++ I + + E S + + L L L ELK I W L FP LE + C
Sbjct: 772 EDI-INKEKAHDGEKSGIVPFPKLNELHLYNLRELKNIYWSPLP--FPCLEKINVMGCPN 828
Query: 772 VTLCPCD 778
+ P D
Sbjct: 829 LKKLPLD 835
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| TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 75/292 (25%), Positives = 120/292 (41%)
Query: 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDIS 562
++M L +L L + LP +IS L SL LDL + ++ +LP + KLK L HL++
Sbjct: 562 RSMPRLVVLDLSWNVNLSGLPDQISELVSLRYLDL-SYSSIGRLPVGLLKLKKLMHLNLE 620
Query: 563 ECFLLDGIPXXXXXXXXXXXXXGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS 622
L+ + + R W L++LE+LE+L LTI I S
Sbjct: 621 SMLCLESVSGIDHLSNLKTV--------RLLNLRMWLTISLLEELERLENLEVLTIEIIS 672
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
+ L + + L ++ V + + + P G FI R + ER
Sbjct: 673 SSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTL-PSIGDLREVFIGGCG-MRDIIIER 730
Query: 683 SQHVES----KLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGR-----LNSLEGSEW 733
+ + S L K+ K +W+ NL +L + R ++ + S
Sbjct: 731 NTSLTSPCFPNLSKVLITGCNGLKDLTWL--LFAPNLTHLNVWNSRQIEEIISQEKASTA 788
Query: 734 ETVKVLRLKYLN-----ELK-IDWKGLQELFPKLEYLE-KFKCHKVTLCPCD 778
+ V +L+YL+ ELK I W L FP L + + KC K+T P D
Sbjct: 789 DIVPFRKLEYLHLWDLPELKSIYWNPLP--FPCLNQINVQNKCRKLTKLPLD 838
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| TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 51/168 (30%), Positives = 83/168 (49%)
Query: 408 FGEKPEQKAVEFEKIKKLFNFSLSLEE-IENKAKDCAMKRGRIETLFNVSEEFPEFKYDW 466
F K QK + F+ I + L+LE+ I + + ++K + + S PEF +
Sbjct: 593 FTHKERQKLLHFKIIHQPERVQLALEDLIYHSPRIRSLKWFGYQNICLPSTFNPEFLVEL 652
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK---ELRLLSLQGMSGIQELP 523
K++ L+ G Q + ++ +++ ++ LK L N+ L L L+ S + ELP
Sbjct: 653 DMSSSKLRKLWEGTKQ--LRNLKWMDLSDSEDLKELPNLSTATNLEELKLRRCSSLVELP 710
Query: 524 SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIP 571
S I LTSL+ILDL +C +L +LP G L LD+ C L +P
Sbjct: 711 SSIEKLTSLQILDLHSCSSLVELPS-FGNATKLEKLDLENCSSLVKLP 757
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| TAIR|locus:2006932 ADR1 "ACTIVATED DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 147 (56.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 41/135 (30%), Positives = 70/135 (51%)
Query: 442 CAMKRGRIETLFNVSEEFP---EFKYDWFSKLEKIKVLY-LGRWQS-TVDDIPHIEIEST 496
C +K ++T F++S+ FP + D L ++K ++ + S ++ + P I
Sbjct: 610 CKVKNSFVQTSFDISKIFPSLSDLTIDHCDDLLELKSIFGITSLNSLSITNCPRI----L 665
Query: 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL 556
+ K L N++ L L L + LP E+ L L+ +D+ C +L LP++ GKL SL
Sbjct: 666 ELPKNLSNVQSLERLRLYACPELISLPVEVCELPCLKYVDISQCVSLVSLPEKFGKLGSL 725
Query: 557 THLDISECFLLDGIP 571
+D+ EC LL G+P
Sbjct: 726 EKIDMRECSLL-GLP 739
|
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| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 50/181 (27%), Positives = 77/181 (42%)
Query: 602 CSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQT 661
CSL+DL + LR LTI + E E L+ + + L+ GS + TK +
Sbjct: 694 CSLEDLRGMVRLRTLTIELRKET-SLETLAASIGGLKYLESLTITDLGSEMR-TK---EA 748
Query: 662 GRKDNF-FIKTLT-KFRTRVTERSQHVESKLEKLDFQ-C-FPDEKLP--SWVHPYSFKNL 715
G +F ++KTLT K + QH S L L Q C ++ +P +H L
Sbjct: 749 GIVFDFVYLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELEL 808
Query: 716 KNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLC 775
+ G + G + ++ L +K L E + DWK + P L L+ C K+
Sbjct: 809 RRKSFSGKEMVCSSGG-FPQLQKLSIKGLEEWE-DWKVEESSMPVLHTLDIRDCRKLKQL 866
Query: 776 P 776
P
Sbjct: 867 P 867
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XI.2183.1 | hypothetical protein (468 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 801 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-05 | |
| TIGR02031 | 589 | TIGR02031, BchD-ChlD, magnesium chelatase ATPase s | 7e-04 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 0.002 | |
| PHA01732 | 94 | PHA01732, PHA01732, proline-rich protein | 0.003 | |
| pfam05308 | 248 | pfam05308, Mito_fiss_reg, Mitochondrial fission re | 0.003 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTH 558
L GL+N+ L+G ++E+P ++S T+LE L L C +L +LP I L L
Sbjct: 633 LTGLRNI------DLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685
Query: 559 LDISECFLLDGIPKKLSLLS 578
LD+S C L+ +P ++L S
Sbjct: 686 LDMSRCENLEILPTGINLKS 705
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syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 5e-05
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 30 HERVSKEKRPPHTPQSTQDHKKPPPPPPPPPPPQPPT 66
V + RP +ST+ PP P PP PQ P
Sbjct: 2880 RPPVRRLARPA-VSRSTESFALPPDQPERPPQPQAPP 2915
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Length = 3151 |
| >gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 43 PQSTQDHKKPPPPPPPPPPPQPPTTTEE 70
P++T+ + P PPPPPPPP+PP EE
Sbjct: 261 PRATRLPEPEPQPPPPPPPPEPPEPEEE 288
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLD 560
L N+ L L+L + ++P E+ + SL+ + L NL ++P EIG L SL HLD
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL-GYNNLSGEIPYEIGGLTSLNHLD 242
Query: 561 ISECFLLDGIPKKLSLLSKLQVL 583
+ L IP L L LQ L
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYL 265
|
Length = 968 |
| >gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 0.003
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 38 RPPHTPQSTQDHKKPPPPPPPPPPPQPPTTT 68
+PP P PPPPP PP P PT
Sbjct: 8 KPPEPPAPLPPAPVPPPPPAPPAPVPEPTVK 38
|
Length = 94 |
| >gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 39 PPHTPQSTQDHKKPPPPPPPPPPPQPPTTTEES 71
P P PPPPPPPPPPP P S
Sbjct: 175 PTEEPVLEV----PPPPPPPPPPPPPSLQQSTS 203
|
In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 801 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.91 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.85 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.84 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.79 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.78 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.77 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.73 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.69 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.67 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.65 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.64 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.61 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.58 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.52 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.52 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.51 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.49 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.42 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.04 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.0 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.94 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.87 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.83 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.82 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.78 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.74 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.73 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.72 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.71 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.7 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.7 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.67 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.6 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.42 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.41 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.35 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.32 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.13 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.02 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.0 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.0 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.99 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.76 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.72 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.5 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.39 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.39 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.31 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.23 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.23 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.22 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.2 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.19 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.02 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.89 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.74 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.45 | |
| KOG2675 | 480 | consensus Adenylate cyclase-associated protein (CA | 96.41 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.29 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 95.97 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.47 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.39 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.17 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.79 | |
| PF01213 | 312 | CAP_N: Adenylate cyclase associated (CAP) N termin | 94.47 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.38 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.16 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 92.7 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 92.22 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.73 | |
| COG5178 | 2365 | PRP8 U5 snRNP spliceosome subunit [RNA processing | 88.88 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 88.75 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.2 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 87.59 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 84.45 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 83.66 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 83.66 | |
| KOG2675 | 480 | consensus Adenylate cyclase-associated protein (CA | 82.64 | |
| PF05308 | 253 | Mito_fiss_reg: Mitochondrial fission regulator; In | 81.69 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=494.11 Aligned_cols=433 Identities=22% Similarity=0.304 Sum_probs=322.7
Q ss_pred CCCcchhhcccCCCCCCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhH
Q 045877 76 GNCWDYVIISNNKGKISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDL 152 (801)
Q Consensus 76 ~~~w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~ 152 (801)
...|+.+..+++....|+++++|||.+.||..+..+...++++.|..+| ||.+.||......
T Consensus 273 ~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~--------------- 337 (889)
T KOG4658|consen 273 EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS--------------- 337 (889)
T ss_pred cccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccc---------------
Confidence 3448889999988888999999999999999833378999999999999 9999888864411
Q ss_pred HHHHhhhccCCccchhhhhhhHHHHHHHHHHHHHhCCCCCcc----cCCCCCchhHHhhhccCCCC------CCCCcccc
Q 045877 153 ELVLTSQATGSKSVQEVETLQDEIRRISQKFLNLKSKIPPVN----SSSSDDSDAQQRRRINQSKD------LPNMADKT 222 (801)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kc~GlPlai----~~~l~~~~~~~W~~~l~~~~------~~~~~~~~ 222 (801)
++.+.++|++|++||+|+|||+ +.|..+.+.++|+++.+... .+++.
T Consensus 338 --------------------~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~--- 394 (889)
T KOG4658|consen 338 --------------------HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME--- 394 (889)
T ss_pred --------------------cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh---
Confidence 2448999999999999999995 23445588889999877631 22222
Q ss_pred ccccchhHHHHHHhhhccC-CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcc
Q 045877 223 RFKEHDFFIEFKKIFQSLG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFI 301 (801)
Q Consensus 223 ~~~~~~i~~~L~~SYd~L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll 301 (801)
+.|+.+|++|||.|| ++|.||+|||+||+||.|++++||.+|+||||+.+...+ ++++++|+.|+++|+++||+
T Consensus 395 ----~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~-~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 395 ----ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGG-ETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred ----hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccc-cchhcchHHHHHHHHHHHHH
Confidence 469999999999999 999999999999999999999999999999999995544 99999999999999999999
Q ss_pred cccccccCCccceEEechhHHHHHHHHhh-----cCCceeecCCCCC-cccccccccceeeeeeecccCCCcchhhhHHH
Q 045877 302 LPVDKKHRGVANSFRMSPLVRSAVITLAK-----ENNFFHFDSEGIP-TMNFQKYETFKRACLVYDHKEGSVPLRLEQSA 375 (801)
Q Consensus 302 ~~~~~~~~~~~~~~~mHdlv~dl~~~~a~-----~e~f~~~~~~~~~-~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~ 375 (801)
+..+.. ++..+|+|||+|||||.++|+ +|+++.-.+.... ......+...||+++..
T Consensus 470 ~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~--------------- 532 (889)
T KOG4658|consen 470 IEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMN--------------- 532 (889)
T ss_pred hhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEec---------------
Confidence 998765 566799999999999999999 5554332211111 11111233445555443
Q ss_pred HHHHHHHHHHHhhhcCcchhhhhhhhhchhcccCCCcchhhhhhhhccccccccccchhhcchhhhhhccccCceeeecC
Q 045877 376 IKLAAMELLEEKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNV 455 (801)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~ 455 (801)
|++..+.... ..+.|++|.+.
T Consensus 533 ---------------------------------------------------------~~~~~~~~~~--~~~~L~tLll~ 553 (889)
T KOG4658|consen 533 ---------------------------------------------------------NKIEHIAGSS--ENPKLRTLLLQ 553 (889)
T ss_pred ---------------------------------------------------------cchhhccCCC--CCCccceEEEe
Confidence 3322211111 23478899988
Q ss_pred Ccc--cCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCC
Q 045877 456 SEE--FPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLE 533 (801)
Q Consensus 456 ~n~--i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~ 533 (801)
.|. +..+...+|..++.|+||||++|.- ...+|..+++|.+||||+|+++ .+..+|..+++|..|.
T Consensus 554 ~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-----------l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 554 RNSDWLLEISGEFFRSLPLLRVLDLSGNSS-----------LSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred ecchhhhhcCHHHHhhCcceEEEECCCCCc-----------cCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 886 7888889999999999999998742 2478999999999999999995 7789999999999999
Q ss_pred EEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccC
Q 045877 534 ILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHL 613 (801)
Q Consensus 534 ~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L 613 (801)
+|++.++.....+|..+..|.+|++|.+..-... .--..++.+.+|++|..+.+.... . .....+..+++|
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s-------~-~~~e~l~~~~~L 692 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISS-------V-LLLEDLLGMTRL 692 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecch-------h-HhHhhhhhhHHH
Confidence 9999998777777887888999999998765411 111123334444444422243332 1 122334445554
Q ss_pred C----eeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 614 R----KLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 614 ~----~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
+ .+.+.++.... ....+..+.+|+.|.+.++.+..
T Consensus 693 ~~~~~~l~~~~~~~~~---~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRT---LISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HHHhHhhhhcccccce---eecccccccCcceEEEEcCCCch
Confidence 4 33332222111 15678889999999999888764
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=462.61 Aligned_cols=555 Identities=16% Similarity=0.179 Sum_probs=381.7
Q ss_pred cchhhcccCCCCCCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHH
Q 045877 79 WDYVIISNNKGKISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELV 155 (801)
Q Consensus 79 w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~ 155 (801)
|+.+.........|++|+||||...++..++ ..++|+|+.++++| +|+++||+...
T Consensus 311 l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~-~~~~~~v~~l~~~ea~~LF~~~Af~~~~-------------------- 369 (1153)
T PLN03210 311 LDALAGQTQWFGSGSRIIVITKDKHFLRAHG-IDHIYEVCLPSNELALEMFCRSAFKKNS-------------------- 369 (1153)
T ss_pred HHHHHhhCccCCCCcEEEEEeCcHHHHHhcC-CCeEEEecCCCHHHHHHHHHHHhcCCCC--------------------
Confidence 4444443344457999999999999998766 67899999999988 99999997543
Q ss_pred HhhhccCCccchhhhhhhHHHHHHHHHHHHHhCCCCCcc---cCCCCCchhHHhhhccCCCCCCCCccccccccchhHHH
Q 045877 156 LTSQATGSKSVQEVETLQDEIRRISQKFLNLKSKIPPVN---SSSSDDSDAQQRRRINQSKDLPNMADKTRFKEHDFFIE 232 (801)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kc~GlPlai---~~~l~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~i~~~ 232 (801)
.++++.+++++|+++|+|+|||+ |..+.+++..+|++++++.... . +.+|+.+
T Consensus 370 ----------------~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~-~-------~~~I~~~ 425 (1153)
T PLN03210 370 ----------------PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG-L-------DGKIEKT 425 (1153)
T ss_pred ----------------CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC-c-------cHHHHHH
Confidence 13678999999999999999995 4455568999999988763211 1 1359999
Q ss_pred HHHhhhccC--CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCC
Q 045877 233 FKKIFQSLG--NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRG 310 (801)
Q Consensus 233 L~~SYd~L~--~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~ 310 (801)
|++|||+|+ ..|.||+||||||.++.+ +.|..|++++.+... ..++.|+++|||+....
T Consensus 426 L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~~------------~~l~~L~~ksLi~~~~~---- 486 (1153)
T PLN03210 426 LRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDVN------------IGLKNLVDKSLIHVRED---- 486 (1153)
T ss_pred HHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCch------------hChHHHHhcCCEEEcCC----
Confidence 999999998 599999999999998744 457788887655432 13889999999987532
Q ss_pred ccceEEechhHHHHHHHHhhcCCceeecCCCCCcccccccccceeeeeeecccCCCcchhhhHHHHHHHHHHHHHHhhhc
Q 045877 311 VANSFRMSPLVRSAVITLAKENNFFHFDSEGIPTMNFQKYETFKRACLVYDHKEGSVPLRLEQSAIKLAAMELLEEKRLG 390 (801)
Q Consensus 311 ~~~~~~mHdlv~dl~~~~a~~e~f~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (801)
+++|||++|+||+.+++++.- . +.+.+++|...+- ++..... .+
T Consensus 487 ---~~~MHdLl~~~~r~i~~~~~~-~-------------~~~r~~l~~~~di------------------~~vl~~~-~g 530 (1153)
T PLN03210 487 ---IVEMHSLLQEMGKEIVRAQSN-E-------------PGEREFLVDAKDI------------------CDVLEDN-TG 530 (1153)
T ss_pred ---eEEhhhHHHHHHHHHHHhhcC-C-------------CCcceeEeCHHHH------------------HHHHHhC-cc
Confidence 689999999999999988641 0 1133344432100 0000000 00
Q ss_pred CcchhhhhhhhhchhcccCCCc--chhhhhhhhccccccccccchh------hcchhhhhhccc-cCceeeecCCcccCC
Q 045877 391 EDNQKAVQFAESMALFNFGEKP--EQKAVEFEKIKKLFNFSLSLEE------IENKAKDCAMKR-GRIETLFNVSEEFPE 461 (801)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~~-~~L~~L~l~~n~i~~ 461 (801)
... ...+.+...+.. ......|..+++|+.|.+..+. +....|..|..+ .+|+.|...++.+..
T Consensus 531 ~~~-------v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~ 603 (1153)
T PLN03210 531 TKK-------VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC 603 (1153)
T ss_pred cce-------eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC
Confidence 000 000001111111 1234568889999999987664 333445555544 458889888888877
Q ss_pred CChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCC
Q 045877 462 FKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACY 541 (801)
Q Consensus 462 ~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~ 541 (801)
++.. | .+.+|+.|+|++|.+ ..++..+..+++|++|+|++|..++.+|. ++.+++|++|+|++|.
T Consensus 604 lP~~-f-~~~~L~~L~L~~s~l------------~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 604 MPSN-F-RPENLVKLQMQGSKL------------EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS 668 (1153)
T ss_pred CCCc-C-CccCCcEEECcCccc------------cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence 6544 3 578999999999988 35677888999999999999877888885 8899999999999998
Q ss_pred CCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecc
Q 045877 542 NLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININ 621 (801)
Q Consensus 542 ~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n 621 (801)
....+|..++++++|++|++++|...+.+|..+ ++++|+.|+ ++++.. ...++. ...+|+.|+|++|
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~---Lsgc~~------L~~~p~---~~~nL~~L~L~~n 735 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN---LSGCSR------LKSFPD---ISTNISWLDLDET 735 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe---CCCCCC------cccccc---ccCCcCeeecCCC
Confidence 899999999999999999999998788888766 788899888 666540 112222 2467899999999
Q ss_pred cccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCC-CC
Q 045877 622 SEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCF-PD 700 (801)
Q Consensus 622 ~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n-~~ 700 (801)
.+... +..+ .+++|+.|.+..+........ . . .+.......+++|+.|+|++| ..
T Consensus 736 ~i~~l---P~~~-~l~~L~~L~l~~~~~~~l~~~-~------------~-------~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 736 AIEEF---PSNL-RLENLDELILCEMKSEKLWER-V------------Q-------PLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred ccccc---cccc-cccccccccccccchhhcccc-c------------c-------ccchhhhhccccchheeCCCCCCc
Confidence 87643 2222 567888888766432211000 0 0 000111112345666666654 34
Q ss_pred CCCCcccCCCCCCCccEEEeeCCc-CCCCCCC-cccccceeccc-------------ccccccccccccc------CcCC
Q 045877 701 EKLPSWVHPYSFKNLKNLYIRGGR-LNSLEGS-EWETVKVLRLK-------------YLNELKIDWKGLQ------ELFP 759 (801)
Q Consensus 701 ~~lp~~l~~~~l~~L~~L~L~~n~-l~~~~~~-~f~~L~~l~L~-------------~L~~L~l~~n~l~------~~~p 759 (801)
..+|.++. ++++|+.|+|++|. +..++.. .+++|+.+++. +|+.|++++|.++ +.++
T Consensus 792 ~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 792 VELPSSIQ--NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred cccChhhh--CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCC
Confidence 44565554 66666666666653 3333321 23444444443 4566777777775 5688
Q ss_pred CCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcc
Q 045877 760 KLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQ 797 (801)
Q Consensus 760 ~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~ 797 (801)
+|+.|++.+|++|+.+|. .+..++.|+.|+++++.
T Consensus 870 ~L~~L~L~~C~~L~~l~~---~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSL---NISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCEEECCCCCCcCccCc---ccccccCCCeeecCCCc
Confidence 999999999999999988 45667888888888775
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=311.90 Aligned_cols=354 Identities=18% Similarity=0.152 Sum_probs=209.6
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
+..+..+++|++|+|++|.+.+..|..+.++++|++|.+.+|.+....|..|.++++|++|+|++|.+++
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------- 226 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG---------- 226 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC----------
Confidence 3456667777777777777777777777777777777777777766666677777777777777776642
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
.+|..++++++|++|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.
T Consensus 227 -~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 227 -EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred -cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 3466677777777777777766667777777777777777777776677777777777777777777777777777777
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
++++|+.|+ +++|. + ....+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+.
T Consensus 306 ~l~~L~~L~---l~~n~-----~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 306 QLQNLEILH---LFSNN-----F-TGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred CCCCCcEEE---CCCCc-----c-CCcCChhHhcCCCCCEEECcCCCCcCcC--ChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 777777776 55555 1 1234556677777777777777766554 56667777777777777776654433
Q ss_pred CCCCCCCccchhchhhhhcccccccccccc---cCCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCcCCCCCCC
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGRLNSLEGS 731 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~ 731 (801)
.+. ....++.|....+.+....+. -.++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+++..+.
T Consensus 375 ~~~------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 375 GLC------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT--KLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred hHh------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh--cCCCCCEEECcCCcccCccCh
Confidence 221 011222233322222211110 0135555555555433 2344433 455555555555554444332
Q ss_pred ---cccccceecc---------------ccccccccccccccCc-------CCCCceeeccC-------------CCCCc
Q 045877 732 ---EWETVKVLRL---------------KYLNELKIDWKGLQEL-------FPKLEYLEKFK-------------CHKVT 773 (801)
Q Consensus 732 ---~f~~L~~l~L---------------~~L~~L~l~~n~l~~~-------~p~L~~L~l~~-------------c~~L~ 773 (801)
.+++|+.+++ .+|+.|+++.|.+.+. +++|+.|++++ |++|+
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence 2233333322 2355555666555422 33455554443 23344
Q ss_pred ccCCCCC--------cccccCCcceEeCCCcccc
Q 045877 774 LCPCDGY--------GIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 774 ~lp~~~n--------~i~~~~~L~~LdlS~~~~~ 799 (801)
.+.+..| .+..+++|+.|||++|++.
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 4444443 3345677777777777764
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=308.17 Aligned_cols=347 Identities=18% Similarity=0.169 Sum_probs=234.7
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
+..+.++++|++|+|++|++.+..|..+..+++|++|.+.+|.+.+..+..|.++++|++|+|++|.+++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~---------- 298 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG---------- 298 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc----------
Confidence 3445556666666666666665556556666666666666665555555555566666666666665532
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
.+|..+.++++|++|++++|.+.+.+|..++.+++|++|+|++|.+.+.+|..++.+.+|+.|++++|.+.+.+|..+.
T Consensus 299 -~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 299 -EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred -CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 3455666666777777776666666666666777777777777666666666666777777777777776666666666
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+.+|+.|+ +++|. + ....+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+.
T Consensus 378 ~~~~L~~L~---l~~n~-----l-~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 378 SSGNLFKLI---LFSNS-----L-EGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred CcCCCCEEE---CcCCE-----e-cccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHhcCCCCCEEECcCCcccCccCh
Confidence 666666666 55554 1 1234566777888888888888877665 67788888888888888888775543
Q ss_pred CCCCCCCccchhchhhhhccccccccccccc--CCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCcCCCCCCCc
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQHV--ESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSE 732 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~--~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~ 732 (801)
.+ .....++.|+...+.+....+.. ..+|+.|+|++|.+. .+|.++. .+++|+.|+|++|.+.+..+..
T Consensus 447 ~~------~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 447 RK------WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG--SLSELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred hh------ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhh--hhhccCEEECcCCcceeeCChH
Confidence 22 11234555555555443222211 257999999988775 5677766 8999999999999998887766
Q ss_pred ccccceeccccccccccccccccC-------cCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCccccC
Q 045877 733 WETVKVLRLKYLNELKIDWKGLQE-------LFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHRA 800 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n~l~~-------~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~~ 800 (801)
+ ..+.+|+.|++++|.+++ .+++|+.|++++|.-...+|. .+.+++.|+.||+++|++..
T Consensus 519 ~-----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 519 L-----SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred H-----cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh---hHhcCcccCEEeccCCccee
Confidence 6 456778889999998874 456788888888754445554 66788999999999998763
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-28 Score=257.67 Aligned_cols=325 Identities=17% Similarity=0.122 Sum_probs=225.9
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
....|.++.+|+.+.|.+|.++.++ ..-....+++.|++.+|.|+.+....++.++.||+||||.|.++....
T Consensus 94 d~~~f~nl~nLq~v~l~~N~Lt~IP-~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~------ 166 (873)
T KOG4194|consen 94 DFEFFYNLPNLQEVNLNKNELTRIP-RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK------ 166 (873)
T ss_pred cHHHHhcCCcceeeeeccchhhhcc-cccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC------
Confidence 3455667777777777777776543 333344557777777777777777777777777777777776643321
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL 574 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~ 574 (801)
.+|..-.+|++|+|++|.+...--..|.+|.+|.+|.|+.|.+...-+..|.+|++|+.|+|..|++.-.---.|
T Consensus 167 -----~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 167 -----PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred -----CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence 123344567777777765544444567777777777777775555445566667777777777776542223346
Q ss_pred CCCCcccccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCC
Q 045877 575 SLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANK 653 (801)
Q Consensus 575 ~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 653 (801)
..|.+|+.|. +..|. +...- ..|..|.++++|+|..|++.... ..++.+++.|+.|+|++|.+....
T Consensus 242 qgL~Sl~nlk---lqrN~-------I~kL~DG~Fy~l~kme~l~L~~N~l~~vn--~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 242 QGLPSLQNLK---LQRND-------ISKLDDGAFYGLEKMEHLNLETNRLQAVN--EGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred cCchhhhhhh---hhhcC-------cccccCcceeeecccceeecccchhhhhh--cccccccchhhhhccchhhhheee
Confidence 6777777766 55555 22222 35666777777777777766555 566777777777777777766544
Q ss_pred CCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcc
Q 045877 654 STKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEW 733 (801)
Q Consensus 654 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f 733 (801)
.. +| .+.++|+.|+|++|.++++++.-+ ..|..|++|.|++|.++.+....|
T Consensus 310 ~d-------------------------~W--sftqkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 310 ID-------------------------SW--SFTQKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred cc-------------------------hh--hhcccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHH
Confidence 32 23 335899999999999999987654 578999999999999999988888
Q ss_pred cccceecccccccccccccccc----------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 734 ETVKVLRLKYLNELKIDWKGLQ----------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 734 ~~L~~l~L~~L~~L~l~~n~l~----------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
-.+++|+.|+|+.|.++ ..+|+|+.|.+.+. +|+.++- ..+..+++|+.|||.+|-+.
T Consensus 362 -----~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k--rAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 362 -----VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK--RAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred -----HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecch--hhhccCcccceecCCCCcce
Confidence 67889999999999887 23788888888874 7887775 47788999999999999765
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-27 Score=248.20 Aligned_cols=331 Identities=20% Similarity=0.222 Sum_probs=243.7
Q ss_pred hhchhcccCCC-cchhhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCC-CChhhhccCCCCCEEEc
Q 045877 401 ESMALFNFGEK-PEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPE-FKYDWFSKLEKIKVLYL 478 (801)
Q Consensus 401 ~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~f~~l~~L~~L~L 478 (801)
.+..++.+... -+..+.+++.+.+|.+|.+++|++..+..+ +..+++|+.+....|++.. -+|..+..+..|.+|||
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 34445555433 245788999999999999999999876544 4578999999999888743 23455568999999999
Q ss_pred CCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchh-hcCCCCCCEEeccCCCCCCCCcccccCCCCCC
Q 045877 479 GRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDEIGKLKSLT 557 (801)
Q Consensus 479 s~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~ 557 (801)
|+|++ .+.|..+...+++-+|+|++| .+..+|.. +-+|+.|-+|||++| .+..+|..+..|..|+
T Consensus 111 ShNqL------------~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 111 SHNQL------------REVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred chhhh------------hhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhh
Confidence 99999 577999999999999999997 67788855 568999999999998 6778899999999999
Q ss_pred EEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhccc
Q 045877 558 HLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFK 637 (801)
Q Consensus 558 ~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~ 637 (801)
.|+|++|.+...--..+..+++|++|+ +++.+ -+...+|.++..|.+|+.+|++.|.+... +..+.++.
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLh---ms~Tq-----RTl~N~Ptsld~l~NL~dvDlS~N~Lp~v---Pecly~l~ 245 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLH---MSNTQ-----RTLDNIPTSLDDLHNLRDVDLSENNLPIV---PECLYKLR 245 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhh---ccccc-----chhhcCCCchhhhhhhhhccccccCCCcc---hHHHhhhh
Confidence 999999987543333455677777777 66655 33456788999999999999999988755 78999999
Q ss_pred CCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccE
Q 045877 638 RLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKN 717 (801)
Q Consensus 638 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~ 717 (801)
+|+.|+|++|.++..... . ....+|+.|+|+.|.++.+|+.+. .|+.|++
T Consensus 246 ~LrrLNLS~N~iteL~~~---------------------------~-~~W~~lEtLNlSrNQLt~LP~avc--KL~kL~k 295 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMT---------------------------E-GEWENLETLNLSRNQLTVLPDAVC--KLTKLTK 295 (1255)
T ss_pred hhheeccCcCceeeeecc---------------------------H-HHHhhhhhhccccchhccchHHHh--hhHHHHH
Confidence 999999999998754211 0 112578888888888888888887 8888888
Q ss_pred EEeeCCc--CCCCCCCcccccceecccccccccccccccc------CcCCCCceeeccCCCCCcccCCCCCcccccCCcc
Q 045877 718 LYIRGGR--LNSLEGSEWETVKVLRLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLI 789 (801)
Q Consensus 718 L~L~~n~--l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~ 789 (801)
|++.+|+ +.|++.+ . ..|..|+.+...+|.+. ..++.|+.|.+ +|..|.+||. .|--++.|.
T Consensus 296 Ly~n~NkL~FeGiPSG-I-----GKL~~Levf~aanN~LElVPEglcRC~kL~kL~L-~~NrLiTLPe---aIHlL~~l~ 365 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSG-I-----GKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKL-DHNRLITLPE---AIHLLPDLK 365 (1255)
T ss_pred HHhccCcccccCCccc-h-----hhhhhhHHHHhhccccccCchhhhhhHHHHHhcc-cccceeechh---hhhhcCCcc
Confidence 8888887 4455432 2 34555566666666554 22334444444 2334444443 444556666
Q ss_pred eEeCCCcc
Q 045877 790 NLNNSKQQ 797 (801)
Q Consensus 790 ~LdlS~~~ 797 (801)
+||+-.|.
T Consensus 366 vLDlreNp 373 (1255)
T KOG0444|consen 366 VLDLRENP 373 (1255)
T ss_pred eeeccCCc
Confidence 66666654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-25 Score=238.24 Aligned_cols=312 Identities=15% Similarity=0.119 Sum_probs=226.5
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
+.||+++|.|+.+.+..|.++++|..+.+..|.+..++ .+-....+|+.|+|.+|.|+... .+.+..+
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP-~f~~~sghl~~L~L~~N~I~sv~-----------se~L~~l 148 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP-RFGHESGHLEKLDLRHNLISSVT-----------SEELSAL 148 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcc-cccccccceeEEeeecccccccc-----------HHHHHhH
Confidence 45888888888888888888888888888888777653 23334455888888888775432 4556777
Q ss_pred cCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 506 KELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+.||.|||+.| ++..+| .+|..=.++++|+|++|.+...--..|..|.+|..|.|++|+++..-+..|.+|+.|+.|+
T Consensus 149 ~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 149 PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 78888888886 556665 4566667788888888866665566777888888888888887766666777788888887
Q ss_pred cccccCCcchhhhhhcccC-cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCc
Q 045877 585 GFVISDHAEDDRRWKRWCS-LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGR 663 (801)
Q Consensus 585 ~~~l~~n~~~~~~~~~~~~-~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 663 (801)
+..|. +... -..|..|++|+.|.|..|.+.... ...|..|.++++|+|..|++.....
T Consensus 228 ---LnrN~-------irive~ltFqgL~Sl~nlklqrN~I~kL~--DG~Fy~l~kme~l~L~~N~l~~vn~--------- 286 (873)
T KOG4194|consen 228 ---LNRNR-------IRIVEGLTFQGLPSLQNLKLQRNDISKLD--DGAFYGLEKMEHLNLETNRLQAVNE--------- 286 (873)
T ss_pred ---ccccc-------eeeehhhhhcCchhhhhhhhhhcCccccc--Ccceeeecccceeecccchhhhhhc---------
Confidence 77776 2111 235778888888888888877666 5677888888888888888775432
Q ss_pred cchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccc
Q 045877 664 KDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKY 743 (801)
Q Consensus 664 ~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~ 743 (801)
++...+ +.|+.|+|++|.+.++...-. ..+++|+.|+|+.|+|+.++++.| -.|+.
T Consensus 287 -----------------g~lfgL-t~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf-----~~L~~ 342 (873)
T KOG4194|consen 287 -----------------GWLFGL-TSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSF-----RVLSQ 342 (873)
T ss_pred -----------------cccccc-chhhhhccchhhhheeecchh-hhcccceeEeccccccccCChhHH-----HHHHH
Confidence 222332 789999999998877643222 358999999999999999999888 57888
Q ss_pred ccccccccccccCcCCCCceeeccCCCCCcccCCCCC-----------cccccCCcceEeCCCcccc
Q 045877 744 LNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGY-----------GIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 744 L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n-----------~i~~~~~L~~LdlS~~~~~ 799 (801)
|+.|.|+.|.+. .|.+-.+.+..+|..|.+..| .+..++.|..|++.+||++
T Consensus 343 Le~LnLs~Nsi~----~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 343 LEELNLSHNSID----HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred hhhhcccccchH----HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 999999999886 222222333334444444444 4457999999999999987
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-23 Score=223.05 Aligned_cols=330 Identities=18% Similarity=0.180 Sum_probs=150.9
Q ss_pred cccccccchhhc-chhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 425 LFNFSLSLEEIE-NKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 425 L~~L~Ls~N~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
.+-.|++.|.|+ +..|.....+++++.|-+....+..+ |..++.|.+|+.|.+++|+++ .+-..+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~------------~vhGELs 75 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLI------------SVHGELS 75 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhH------------hhhhhhc
Confidence 444455555555 33444444445555544444433332 334455555555555555542 2333444
Q ss_pred CCcCCceEeecCCCCC-ccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 504 NMKELRLLSLQGMSGI-QELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~-~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.|+.||.+.++.|++- .-+|..|..|..|.+|||++| .+.+.|..+..-+++-+|+||+|+|.++-..-|-+|+.|-.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 4555555555544331 224444555555555555554 23344554544555555555555443221122344444444
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC-CCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN-KSTKPEPQT 661 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~ 661 (801)
|+ +++|. ....|+.+..|.+|++|+|++|.+.-.. ...+..+++|+.|.+++.+-+-. .|...
T Consensus 155 LD---LS~Nr-------Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsl---- 218 (1255)
T KOG0444|consen 155 LD---LSNNR-------LEMLPPQIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSL---- 218 (1255)
T ss_pred hc---cccch-------hhhcCHHHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCch----
Confidence 44 45554 3344444555555555555555443222 22333334444444443321100 00000
Q ss_pred Cccchhchhhhhccccccc---ccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccce
Q 045877 662 GRKDNFFIKTLTKFRTRVT---ERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKV 738 (801)
Q Consensus 662 ~~~~~~~l~~L~~~~~~l~---~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~ 738 (801)
-...++..+++..|.++ .....+ .+|+.|+|++|.++.+..... .-.+|+.|+|+.|+++.++...+
T Consensus 219 --d~l~NL~dvDlS~N~Lp~vPecly~l-~~LrrLNLS~N~iteL~~~~~--~W~~lEtLNlSrNQLt~LP~avc----- 288 (1255)
T KOG0444|consen 219 --DDLHNLRDVDLSENNLPIVPECLYKL-RNLRRLNLSGNKITELNMTEG--EWENLETLNLSRNQLTVLPDAVC----- 288 (1255)
T ss_pred --hhhhhhhhccccccCCCcchHHHhhh-hhhheeccCcCceeeeeccHH--HHhhhhhhccccchhccchHHHh-----
Confidence 00001111111111111 111111 456666666666655544333 44556666666666666554333
Q ss_pred ecccccccccccccccc--------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 739 LRLKYLNELKIDWKGLQ--------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 739 l~L~~L~~L~l~~n~l~--------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
.|+.|..|.+..|.+. |.+-+|+.+...+ .+|..+|. .+..+..|+.|.|++|++.
T Consensus 289 -KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPE---glcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 289 -KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE---GLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred -hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCch---hhhhhHHHHHhccccccee
Confidence 4566666666666665 2222233333322 24444444 6778888888888888764
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-23 Score=213.88 Aligned_cols=344 Identities=19% Similarity=0.169 Sum_probs=205.4
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
...+++.+-.|..++..+|+|+..+++.+ .+.++..+++.+|++..+++.... |+.|+.||...|-+
T Consensus 129 l~~~i~~~~~l~dl~~~~N~i~slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L----------- 195 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNNQISSLPEDMV-NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL----------- 195 (565)
T ss_pred cCchHHHHhhhhhhhccccccccCchHHH-HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh-----------
Confidence 34566777777777777777776554443 456666677777777777776666 77777777777766
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc-CCCCCCEEcccCCccccCCCcc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG-KLKSLTHLDISECFLLDGIPKK 573 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~-~L~~L~~L~Ls~n~l~~~~p~~ 573 (801)
..+|..++.+.+|..|+|.+| .+..+| +|.++..|..|+++.| .+..+|.+.+ +|.+|..|||..|++. .+|++
T Consensus 196 -~tlP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 -ETLPPELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred -hcCChhhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 355666777777777777775 455566 4666666666666665 4455565554 5666666666666643 56666
Q ss_pred cCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccccc-------------------------
Q 045877 574 LSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTE------------------------- 628 (801)
Q Consensus 574 ~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~------------------------- 628 (801)
+.-+++|++|+ +++|. +...|.++++| .|+.|-+.+|.+.....
T Consensus 271 ~clLrsL~rLD---lSNN~-------is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 271 ICLLRSLERLD---LSNND-------ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred HHHhhhhhhhc---ccCCc-------cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 66666666666 66666 55566666666 66666666665421100
Q ss_pred --------------ChhhhhcccCCcEEEeeccCCCCCCCCCCCCC---------CCcc-------chhchh---hhhcc
Q 045877 629 --------------NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ---------TGRK-------DNFFIK---TLTKF 675 (801)
Q Consensus 629 --------------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---------~~~~-------~~~~l~---~L~~~ 675 (801)
.......+.+.+.|+++.-+++.+..+.|.+. +... ....+. ..-.+
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence 00112223344455555444443332222100 0000 000011 11112
Q ss_pred cccccccccc---cCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccc
Q 045877 676 RTRVTERSQH---VESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWK 752 (801)
Q Consensus 676 ~~~l~~~~~~---~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n 752 (801)
++..-++.+. ..++|..|+|++|.+-.+|..++ .+..|+.|+|+.|+|..++.-.. .+..++.+-.+.|
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~--~lv~Lq~LnlS~NrFr~lP~~~y------~lq~lEtllas~n 491 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMG--SLVRLQTLNLSFNRFRMLPECLY------ELQTLETLLASNN 491 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhhhcchhhh--hhhhhheecccccccccchHHHh------hHHHHHHHHhccc
Confidence 2222222211 12577888888888888888877 77778888888887776654211 3344455554556
Q ss_pred ccc-------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 753 GLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 753 ~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
++. +.+.+|..|++.+. .+..+|. .+++|++|..|++++|.+|
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp---~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPP---ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccChHHhhhhhhcceeccCCC-chhhCCh---hhccccceeEEEecCCccC
Confidence 664 34556666666553 5666666 7889999999999999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-21 Score=215.08 Aligned_cols=344 Identities=19% Similarity=0.175 Sum_probs=214.4
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
..++.|+++.|-+-..+-+...+.-+|+.|++++|++..+ |..+..+.+|+.|+++.|-+ ..+|.+.
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i------------~~vp~s~ 87 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYI------------RSVPSSC 87 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccccC-CchhhhHHHHhhcccchhhH------------hhCchhh
Confidence 3477788888876554433334455588899988888765 44567788899999999987 4678888
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC-------------------CEEcccC
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL-------------------THLDISE 563 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L-------------------~~L~Ls~ 563 (801)
.++.+|++|+|.+| ....+|.++..+.+|++|++++|.+ +.+|..+..++.+ +++++..
T Consensus 88 ~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~ 165 (1081)
T KOG0618|consen 88 SNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRL 165 (1081)
T ss_pred hhhhcchhheeccc-hhhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhh
Confidence 99999999999986 7788999999999999999999854 4445333222222 2222222
Q ss_pred CccccCCCcccC-------------------CCCcccccc---------------------------------------c
Q 045877 564 CFLLDGIPKKLS-------------------LLSKLQVLK---------------------------------------G 585 (801)
Q Consensus 564 n~l~~~~p~~~~-------------------~L~~L~~L~---------------------------------------~ 585 (801)
|.+.+.++..+. ++.+|+.|. .
T Consensus 166 n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~ 245 (1081)
T KOG0618|consen 166 NVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQY 245 (1081)
T ss_pred hhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccccccccee
Confidence 222222222111 111122111 0
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccccc--------------------ChhhhhcccCCcEEEee
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTE--------------------NLSTVLAFKRLLQLKVS 645 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~--------------------~~~~l~~l~~L~~L~L~ 645 (801)
+.++.|. ....|.+++.+.+|+.|++.+|++..... .+..+.++++|++|+|.
T Consensus 246 ~dis~n~-------l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 246 LDISHNN-------LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred eecchhh-------hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 0033333 44456778888889999888888743220 02345567788999999
Q ss_pred ccCCCCCCCCCC-------------------CCCCCccchhchhhhhcccccccccccc---cCCCccEEEccCCCCCCC
Q 045877 646 WGGGSANKSTKP-------------------EPQTGRKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEKL 703 (801)
Q Consensus 646 ~n~l~~~~~~~~-------------------~~~~~~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~l 703 (801)
.|++.......+ .+..+......++.|...+|.+...... -..+|+.|+|++|++..+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 888875433111 0111222223344444444444322211 126899999999999889
Q ss_pred CcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc-----CcCCCCceeeccCCCCCcccCCC
Q 045877 704 PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ-----ELFPKLEYLEKFKCHKVTLCPCD 778 (801)
Q Consensus 704 p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~-----~~~p~L~~L~l~~c~~L~~lp~~ 778 (801)
|+... .+++.|+.|+|++|+|+.++... ..+..|+.|....|.+. ..+|.|+.+++ .|.+|+.+-+.
T Consensus 399 pas~~-~kle~LeeL~LSGNkL~~Lp~tv------a~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~ 470 (1081)
T KOG0618|consen 399 PASKL-RKLEELEELNLSGNKLTTLPDTV------ANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL-SCNNLSEVTLP 470 (1081)
T ss_pred CHHHH-hchHHhHHHhcccchhhhhhHHH------HhhhhhHHHhhcCCceeechhhhhcCcceEEec-ccchhhhhhhh
Confidence 98765 68899999999999998887522 35666777776777665 33455566666 34556554443
Q ss_pred CCcccccCCcceEeCCCccc
Q 045877 779 GYGIWEKSDLINLNNSKQQH 798 (801)
Q Consensus 779 ~n~i~~~~~L~~LdlS~~~~ 798 (801)
...=| ++|++||||+|..
T Consensus 471 ~~~p~--p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 471 EALPS--PNLKYLDLSGNTR 488 (1081)
T ss_pred hhCCC--cccceeeccCCcc
Confidence 22222 7888888888863
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-21 Score=198.16 Aligned_cols=344 Identities=19% Similarity=0.167 Sum_probs=212.0
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
.+.+++.+..++.++.++|+++.++++ .+.+.+++.++.++|.+..+++ .++.+..|..|+..+|++
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i----------- 149 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPD-SIGRLLDLEDLDATNNQI----------- 149 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCc-hHHHHhhhhhhhcccccc-----------
Confidence 455667777777777777777665443 3456667777777777766543 345566677777777776
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL 574 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~ 574 (801)
..+|+.+.++.+|..|++.+|. +..+|+..-+++.|+.||...| .++.+|..++.|.+|..|+|..|++. .+| .|
T Consensus 150 -~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef 224 (565)
T KOG0472|consen 150 -SSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR-FLP-EF 224 (565)
T ss_pred -ccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc-cCC-CC
Confidence 3567777777777777777764 3444444444777777777776 67777777888888888888887754 555 67
Q ss_pred CCCCcccccccccccCCcchhhhhhcccCcccc-cCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCC
Q 045877 575 SLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDL-EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANK 653 (801)
Q Consensus 575 ~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l-~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 653 (801)
..+..|.+|+ ++.|. +...+.+. +++.+|..||+..|++... |..+.-+++|.+||+++|.+++..
T Consensus 225 ~gcs~L~Elh---~g~N~-------i~~lpae~~~~L~~l~vLDLRdNklke~---Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 225 PGCSLLKELH---VGENQ-------IEMLPAEHLKHLNSLLVLDLRDNKLKEV---PDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred CccHHHHHHH---hcccH-------HHhhHHHHhcccccceeeeccccccccC---chHHHHhhhhhhhcccCCccccCC
Confidence 7777777777 77776 44455443 3777777777777777655 566677777777777777777654
Q ss_pred CCCCCCCC------C------------ccchhchhhhhc------cccc--cccc-----ccccC-----CCccEEEccC
Q 045877 654 STKPEPQT------G------------RKDNFFIKTLTK------FRTR--VTER-----SQHVE-----SKLEKLDFQC 697 (801)
Q Consensus 654 ~~~~~~~~------~------------~~~~~~l~~L~~------~~~~--l~~~-----~~~~~-----~~L~~L~L~~ 697 (801)
..-..-.+ | .-....+++|.. .+.. -... ...++ .+.+.|++++
T Consensus 292 ~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 292 YSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred cccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 32110000 0 000111222211 0000 0000 00011 4678888888
Q ss_pred CCCCCCCcccCC-CCCCCccEEEeeCCcCCCCCCCcccccceeccccc-ccccccccccc------CcCCCCceeeccCC
Q 045877 698 FPDEKLPSWVHP-YSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYL-NELKIDWKGLQ------ELFPKLEYLEKFKC 769 (801)
Q Consensus 698 n~~~~lp~~l~~-~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L-~~L~l~~n~l~------~~~p~L~~L~l~~c 769 (801)
-.++.+|+.++. ..-.-....+++.|++..++..-- .+..+ ..+.++.|.++ ..+++|..|++++.
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~------~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV------ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH------HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence 888888887762 111227788999999888875211 12222 23345555554 35566666666653
Q ss_pred CCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 770 HKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 770 ~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
-|..+|. .+..+..|+.||+|.|+||
T Consensus 446 -~Ln~LP~---e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 446 -LLNDLPE---EMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred -hhhhcch---hhhhhhhhheecccccccc
Confidence 3566666 5566677888899988876
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=211.13 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=75.7
Q ss_pred CccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCC
Q 045877 610 LEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESK 689 (801)
Q Consensus 610 L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 689 (801)
.++|+.|+|++|...... +..+.++++|+.|+|++|...+..+... ....|+.|+...+......+..+.+
T Consensus 777 ~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred cccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCccccccccccc
Confidence 457888888887655444 6778888999999998875433333211 1223333333332222222333467
Q ss_pred ccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCc-CCCCCC--Ccccccceecccccccc
Q 045877 690 LEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGR-LNSLEG--SEWETVKVLRLKYLNEL 747 (801)
Q Consensus 690 L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~-l~~~~~--~~f~~L~~l~L~~L~~L 747 (801)
|+.|+|++|.+..+|.++. .+++|+.|+|++|+ +..++. ..+++|+.+.+.+|..|
T Consensus 848 L~~L~Ls~n~i~~iP~si~--~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIE--KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cCEeECCCCCCccChHHHh--cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 7788888777777777776 77788888887754 555543 33445555555554444
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-19 Score=184.21 Aligned_cols=214 Identities=18% Similarity=0.133 Sum_probs=179.1
Q ss_pred chhhhhhhhccccccccccchhhcchhhhhhccccCceeeecCC-cccCCCChhhhccCCCCCEEEcCCcccCCCCCCcc
Q 045877 413 EQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVS-EEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHI 491 (801)
Q Consensus 413 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~ 491 (801)
.--...|..+++|++||||+|+|+.+.|..|.++.++.+|.+.+ |.|..++.+.|.++..|+.|.+.-|++.-
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C------ 154 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC------ 154 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc------
Confidence 33467899999999999999999999999999999999998777 99999999999999999999999998842
Q ss_pred cccchhhhHhhcCCcCCceEeecCCCCCccCch-hhcCCCCCCEEeccCCCCCC--------------------------
Q 045877 492 EIESTDYLKGLKNMKELRLLSLQGMSGIQELPS-EISYLTSLEILDLRACYNLD-------------------------- 544 (801)
Q Consensus 492 ~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~-~i~~L~~L~~L~Ls~n~~~~-------------------------- 544 (801)
...+.|..+++|..|.|..| .+..++. +|..+..++++.+..|.+..
T Consensus 155 -----ir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 155 -----IRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred -----hhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 34678888999999999886 5666665 77788888888777654211
Q ss_pred -----------------------------------CCc-ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccc
Q 045877 545 -----------------------------------KLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVI 588 (801)
Q Consensus 545 -----------------------------------~lp-~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l 588 (801)
..| ..|.+|++|+.|+|++|+++..-+.+|..+..++.|. +
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~---L 305 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY---L 305 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh---c
Confidence 011 2367899999999999999998899999999999999 8
Q ss_pred cCCcchhhhhhcccC-cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCC
Q 045877 589 SDHAEDDRRWKRWCS-LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 589 ~~n~~~~~~~~~~~~-~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
..|+ +..+ -..|.++..|+.|+|.+|+|+... +.+|..+.+|..|+|-.|.+.
T Consensus 306 ~~N~-------l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNK-------LEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred Ccch-------HHHHHHHhhhccccceeeeecCCeeEEEe--cccccccceeeeeehccCccc
Confidence 8887 2222 257889999999999999999887 888999999999999887665
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-19 Score=189.05 Aligned_cols=159 Identities=15% Similarity=0.276 Sum_probs=112.1
Q ss_pred cchhhcccCCCCCCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHH
Q 045877 79 WDYVIISNNKGKISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELV 155 (801)
Q Consensus 79 w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~ 155 (801)
|..+...+.....+++++||||...++..+.....+++|+.|+.+| +|.+.++.... ..
T Consensus 116 ~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~----------------- 177 (287)
T PF00931_consen 116 LEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKES-ES----------------- 177 (287)
T ss_dssp H-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS---------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-----------------
Confidence 5555555555556899999999999988776447899999999998 88888776551 00
Q ss_pred HhhhccCCccchhhhhhhHHHHHHHHHHHHHhCCCCCcccCCCCC-----chhHHhhhccCCC--CCCCCccccccccch
Q 045877 156 LTSQATGSKSVQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDD-----SDAQQRRRINQSK--DLPNMADKTRFKEHD 228 (801)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~~l~~-----~~~~~W~~~l~~~--~~~~~~~~~~~~~~~ 228 (801)
++.+.+++++|+++|+|+|||+ +++|+ .+..+|+.+++.. ......+ ....
T Consensus 178 -----------------~~~~~~~~~~i~~~c~glPLal-~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~----~~~~ 235 (287)
T PF00931_consen 178 -----------------PEDLEDLAKEIVEKCGGLPLAL-KLIASYLRSKSTVDEWEEALEELENSLRESRD----YDRS 235 (287)
T ss_dssp ------------------TTSCTHHHHHHHHTTT-HHHH-HHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSG----SCHH
T ss_pred -----------------cccccccccccccccccccccc-cccccccccccccccccccccccccccccccc----cccc
Confidence 1334568999999999999996 33332 3567898877652 1111110 2246
Q ss_pred hHHHHHHhhhccC-CCccccceecccCCCceechhhHHHHHHHcCCCccc
Q 045877 229 FFIEFKKIFQSLG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKER 277 (801)
Q Consensus 229 i~~~L~~SYd~L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~ 277 (801)
++.++.+||+.|+ ++|+||+|||+||+++.|+++.||++|+++|||...
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999 999999999999999999999999999999999875
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=181.60 Aligned_cols=234 Identities=20% Similarity=0.101 Sum_probs=162.2
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
.-..|+|+.|.|+.+ |.++. .+|+.|.+..|++..++. .+++|+.|+|++|+++. +|..
T Consensus 202 ~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts------------LP~l-- 260 (788)
T PRK15387 202 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS------------LPVL-- 260 (788)
T ss_pred CCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCc------------ccCc--
Confidence 456789999999865 44543 378889999999888653 35789999999998853 2321
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L 583 (801)
..+|+.|+|++|. +..+|..+ .+|+.|+|++|++ ..+|.. +++|++|++++|++.+ +|... .+|+.|
T Consensus 261 -p~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~L-t~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L 327 (788)
T PRK15387 261 -PPGLLELSIFSNP-LTHLPALP---SGLCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKL 327 (788)
T ss_pred -ccccceeeccCCc-hhhhhhch---hhcCEEECcCCcc-cccccc---ccccceeECCCCcccc-CCCCc---cccccc
Confidence 3578899999974 45666533 5788899999854 456652 4679999999998764 55432 346666
Q ss_pred ccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCc
Q 045877 584 KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGR 663 (801)
Q Consensus 584 ~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 663 (801)
+ +++|. ...+|. -..+|+.|+|++|++.... .. ..+|+.|++++|.+.+..
T Consensus 328 ~---Ls~N~-------L~~LP~---lp~~Lq~LdLS~N~Ls~LP---~l---p~~L~~L~Ls~N~L~~LP---------- 378 (788)
T PRK15387 328 W---AYNNQ-------LTSLPT---LPSGLQELSVSDNQLASLP---TL---PSELYKLWAYNNRLTSLP---------- 378 (788)
T ss_pred c---cccCc-------cccccc---cccccceEecCCCccCCCC---CC---CcccceehhhccccccCc----------
Confidence 6 66776 333332 1247888999988887643 11 246777888888776421
Q ss_pred cchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccc
Q 045877 664 KDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKY 743 (801)
Q Consensus 664 ~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~ 743 (801)
..+.+|+.|+|++|.+..+|.. .++|+.|+|++|.|++++. + ..+
T Consensus 379 ---------------------~l~~~L~~LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~--l-------~~~ 423 (788)
T PRK15387 379 ---------------------ALPSGLKELIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPM--L-------PSG 423 (788)
T ss_pred ---------------------ccccccceEEecCCcccCCCCc-----ccCCCEEEccCCcCCCCCc--c-------hhh
Confidence 1235789999999988888754 3578899999999887653 1 234
Q ss_pred cccccccccccc
Q 045877 744 LNELKIDWKGLQ 755 (801)
Q Consensus 744 L~~L~l~~n~l~ 755 (801)
|..|++++|.++
T Consensus 424 L~~L~Ls~NqLt 435 (788)
T PRK15387 424 LLSLSVYRNQLT 435 (788)
T ss_pred hhhhhhccCccc
Confidence 566777777765
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=177.88 Aligned_cols=241 Identities=18% Similarity=0.071 Sum_probs=168.2
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
.+|+.|++++|+|+.++. ..++|++|.+.+|.+..++. ..++|+.|+|++|.++ .+|..
T Consensus 222 ~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~------------~Lp~l- 280 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT------------HLPAL- 280 (788)
T ss_pred cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----cccccceeeccCCchh------------hhhhc-
Confidence 368888999999887543 24788889998888887643 2467888999998873 34432
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
..+|+.|+|++|. +..+|. .+++|+.|+|++|++.+ +|... .+|+.|++++|.+. .+|.. ..+|+.
T Consensus 281 --p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~~Lq~ 346 (788)
T PRK15387 281 --PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTL---PSGLQE 346 (788)
T ss_pred --hhhcCEEECcCCc-cccccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccc-ccccc---ccccce
Confidence 2568888898874 456665 24678999999886553 55422 35778888888875 35542 246788
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 662 (801)
|+ +++|. +..+|.. ..+|+.|++++|.+.... . ...+|+.|++++|.+.+..
T Consensus 347 Ld---LS~N~-------Ls~LP~l---p~~L~~L~Ls~N~L~~LP---~---l~~~L~~LdLs~N~Lt~LP--------- 398 (788)
T PRK15387 347 LS---VSDNQ-------LASLPTL---PSELYKLWAYNNRLTSLP---A---LPSGLKELIVSGNRLTSLP--------- 398 (788)
T ss_pred Ee---cCCCc-------cCCCCCC---CcccceehhhccccccCc---c---cccccceEEecCCcccCCC---------
Confidence 88 78887 4444432 346778888888877542 2 1357888999888876432
Q ss_pred ccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccc
Q 045877 663 RKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742 (801)
Q Consensus 663 ~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~ 742 (801)
..+++|+.|++++|.+..+|... .+|+.|+|++|+|+.++.. + ..+.
T Consensus 399 ----------------------~l~s~L~~LdLS~N~LssIP~l~-----~~L~~L~Ls~NqLt~LP~s-l-----~~L~ 445 (788)
T PRK15387 399 ----------------------VLPSELKELMVSGNRLTSLPMLP-----SGLLSLSVYRNQLTRLPES-L-----IHLS 445 (788)
T ss_pred ----------------------CcccCCCEEEccCCcCCCCCcch-----hhhhhhhhccCcccccChH-H-----hhcc
Confidence 11367889999999888887642 4678889999998877542 3 3567
Q ss_pred cccccccccccccCcCC
Q 045877 743 YLNELKIDWKGLQELFP 759 (801)
Q Consensus 743 ~L~~L~l~~n~l~~~~p 759 (801)
+|..|++++|.+++..+
T Consensus 446 ~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 446 SETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCeEECCCCCCCchHH
Confidence 78888888888875533
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-16 Score=184.40 Aligned_cols=250 Identities=18% Similarity=0.187 Sum_probs=162.7
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
+.+.|+++++.++.++. .+ ...++.|.+.+|.+..++...+ .+|+.|+|++|.++ .+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~-~I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~Lt------------sLP~~l~ 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPA-CI--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLT------------SIPATLP 240 (754)
T ss_pred CceEEEeCCCCcCcCCc-cc--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccc------------cCChhhh
Confidence 45677888888776543 32 2468888888888887766544 47888888888874 3344332
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L 583 (801)
.+|+.|+|++|. +..+|..+. .+|+.|+|++|++. .+|..+. .+|++|++++|++. .+|..+. .+|+.|
T Consensus 241 --~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L 309 (754)
T PRK15370 241 --DTIQEMELSINR-ITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHL 309 (754)
T ss_pred --ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHH
Confidence 368888888875 447777664 57888888887554 5676654 47888888888876 4565443 367777
Q ss_pred ccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCc
Q 045877 584 KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGR 663 (801)
Q Consensus 584 ~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 663 (801)
+ +++|. ...++..+ .++|+.|++++|.+... +..+. ++|+.|++++|.+.....
T Consensus 310 ~---Ls~N~-------Lt~LP~~l--~~sL~~L~Ls~N~Lt~L---P~~l~--~sL~~L~Ls~N~L~~LP~--------- 363 (754)
T PRK15370 310 N---VQSNS-------LTALPETL--PPGLKTLEAGENALTSL---PASLP--PELQVLDVSKNQITVLPE--------- 363 (754)
T ss_pred H---hcCCc-------cccCCccc--cccceeccccCCccccC---Chhhc--CcccEEECCCCCCCcCCh---------
Confidence 7 77776 33344333 25788888888887654 33332 578888888887763211
Q ss_pred cchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccc
Q 045877 664 KDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKY 743 (801)
Q Consensus 664 ~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~ 743 (801)
.++++|+.|+|++|.+..+|..+. ..|+.|++++|+|+.++. .++++. ..++.
T Consensus 364 ---------------------~lp~~L~~LdLs~N~Lt~LP~~l~----~sL~~LdLs~N~L~~LP~-sl~~~~-~~~~~ 416 (754)
T PRK15370 364 ---------------------TLPPTITTLDVSRNALTNLPENLP----AALQIMQASRNNLVRLPE-SLPHFR-GEGPQ 416 (754)
T ss_pred ---------------------hhcCCcCEEECCCCcCCCCCHhHH----HHHHHHhhccCCcccCch-hHHHHh-hcCCC
Confidence 123567777777777777776654 357777777777776543 222221 12345
Q ss_pred cccccccccccc
Q 045877 744 LNELKIDWKGLQ 755 (801)
Q Consensus 744 L~~L~l~~n~l~ 755 (801)
+..|++.+|.++
T Consensus 417 l~~L~L~~Npls 428 (754)
T PRK15370 417 PTRIIVEYNPFS 428 (754)
T ss_pred ccEEEeeCCCcc
Confidence 556666666665
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-17 Score=184.97 Aligned_cols=284 Identities=19% Similarity=0.234 Sum_probs=194.9
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
.++..+..|+.+....|+++...- ..++++.|+...|.+..+.. -..-.+|+.++++.|++ .
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l------------~ 254 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNL------------S 254 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc--ccccccceeeecchhhh------------h
Confidence 455667777888888887764432 34577788888887764322 12235789999999988 4
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc-C
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL-S 575 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~-~ 575 (801)
.+|++++.+.+|+.|+..+|.+ ..+|..+...++|+.|++.+| -+..+|....+++.|++|+|..|++. .+|+.+ .
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~ 331 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLA 331 (1081)
T ss_pred cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcccc-ccchHHHh
Confidence 6788899999999999999754 788888999999999999988 55677888888999999999999864 556533 2
Q ss_pred CCCc-ccccccccccCCcchhhhhhcccCcccc--cCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 576 LLSK-LQVLKGFVISDHAEDDRRWKRWCSLKDL--EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 576 ~L~~-L~~L~~~~l~~n~~~~~~~~~~~~~~~l--~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
.+.. |..|+ .+.|. ....+ .. ..+..|+.|.+.+|.++... ...+.++.+|+.|+|++|.+...
T Consensus 332 v~~~~l~~ln---~s~n~-------l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 332 VLNASLNTLN---VSSNK-------LSTLP-SYEENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hhhHHHHHHh---hhhcc-------ccccc-cccchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccccC
Confidence 2222 44444 55554 22222 22 23556888888888887776 77888888899999998888754
Q ss_pred CCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCc
Q 045877 653 KSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSE 732 (801)
Q Consensus 653 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~ 732 (801)
....+ . . ...|+.|+|+||.++.+|..+. .++.|++|...+|+|..+|.
T Consensus 399 pas~~------------~--------------k-le~LeeL~LSGNkL~~Lp~tva--~~~~L~tL~ahsN~l~~fPe-- 447 (1081)
T KOG0618|consen 399 PASKL------------R--------------K-LEELEELNLSGNKLTTLPDTVA--NLGRLHTLRAHSNQLLSFPE-- 447 (1081)
T ss_pred CHHHH------------h--------------c-hHHhHHHhcccchhhhhhHHHH--hhhhhHHHhhcCCceeechh--
Confidence 32211 0 1 2467777777777777777766 77777777777777665553
Q ss_pred ccccceecccccccccccccccc-----C--cCCCCceeeccCCC
Q 045877 733 WETVKVLRLKYLNELKIDWKGLQ-----E--LFPKLEYLEKFKCH 770 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n~l~-----~--~~p~L~~L~l~~c~ 770 (801)
+ ..++.|+.+|++.|.++ . .-|+|++|++++..
T Consensus 448 ~-----~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 L-----AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred h-----hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 2 35666666777777665 1 12466666666654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-15 Score=175.57 Aligned_cols=228 Identities=18% Similarity=0.194 Sum_probs=173.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
+.|+.|+|++|+|+.++...+ .+|++|++.+|.+..++.... ..|+.|+|++|.++ .+|..+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~------------~LP~~l 260 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRIT------------ELPERL 260 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh---ccccEEECcCCccC------------cCChhH
Confidence 468899999999998765543 489999999999988765433 47999999999984 445555
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
. .+|++|+|++|.+ ..+|..+. .+|++|+|++|++. .+|..+. .+|++|++++|.+.. +|..+. ++|+.
T Consensus 261 ~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~ 329 (754)
T PRK15370 261 P--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKT 329 (754)
T ss_pred h--CCCCEEECcCCcc-CccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--cccee
Confidence 3 4899999999854 56887664 58999999999655 5666553 479999999999874 665443 57888
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 662 (801)
|+ +++|. ...++..+. ++|+.|+|++|++... +..+ .++|+.|+|++|.+.....
T Consensus 330 L~---Ls~N~-------Lt~LP~~l~--~sL~~L~Ls~N~L~~L---P~~l--p~~L~~LdLs~N~Lt~LP~-------- 384 (754)
T PRK15370 330 LE---AGENA-------LTSLPASLP--PELQVLDVSKNQITVL---PETL--PPTITTLDVSRNALTNLPE-------- 384 (754)
T ss_pred cc---ccCCc-------cccCChhhc--CcccEEECCCCCCCcC---Chhh--cCCcCEEECCCCcCCCCCH--------
Confidence 88 88887 445665553 6899999999998754 3333 2689999999998875321
Q ss_pred ccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccC--CCCCCCccEEEeeCCcCC
Q 045877 663 RKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVH--PYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 663 ~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~--~~~l~~L~~L~L~~n~l~ 726 (801)
.++..|+.|++++|.+..+|..+. ...++++..|+|.+|.|+
T Consensus 385 ----------------------~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 385 ----------------------NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ----------------------hHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 123579999999999988887653 125688999999999976
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-16 Score=161.02 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=98.5
Q ss_pred cccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCC-cccCCCCCCcccccchhhh-Hhh
Q 045877 425 LFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGR-WQSTVDDIPHIEIESTDYL-KGL 502 (801)
Q Consensus 425 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lp-~~l 502 (801)
-+.++|..|+|+.+++..|..+.+|+.|++++|.|..|.+++|.+++.|-.|-+-+ |+|+ .+| ..|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~------------~l~k~~F 136 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT------------DLPKGAF 136 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh------------hhhhhHh
Confidence 35677888888888888888888888888888888888888888888876665555 7774 333 467
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc-cccCCCCCCEEcccCCc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD-EIGKLKSLTHLDISECF 565 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~-~~~~L~~L~~L~Ls~n~ 565 (801)
.+|..|+.|.+.-|++.-...+.|..|++|..|.+..|.+ ..++. .|..+..++++.+..|.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCc
Confidence 8888888888888765555557788888888888888744 44444 77888888888887776
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-16 Score=144.60 Aligned_cols=157 Identities=22% Similarity=0.278 Sum_probs=125.9
Q ss_pred ccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchh
Q 045877 446 RGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE 525 (801)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~ 525 (801)
+..+..|.+++|.+..++| -+..+.+|++|++++|++ .++|.++..+++||.|++.-| ....+|..
T Consensus 32 ~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqi------------e~lp~~issl~klr~lnvgmn-rl~~lprg 97 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQI------------EELPTSISSLPKLRILNVGMN-RLNILPRG 97 (264)
T ss_pred hhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchh------------hhcChhhhhchhhhheecchh-hhhcCccc
Confidence 3344555566666655543 357788899999999988 577888999999999999876 45678888
Q ss_pred hcCCCCCCEEeccCCCCC-CCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 526 ISYLTSLEILDLRACYNL-DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 526 i~~L~~L~~L~Ls~n~~~-~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
|+.++.|++|||.+|++. ..+|..|..|+.|+-|+|+.|.+. .+|..++++++||.|. +..|. ....|
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~---lrdnd-------ll~lp 166 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILS---LRDND-------LLSLP 166 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEe---eccCc-------hhhCc
Confidence 999999999999988765 467888888889999999999864 7888899999999988 77777 66778
Q ss_pred ccccCCccCCeeEeecccccccc
Q 045877 605 KDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
.+++.++.|+.|.+.+|+++...
T Consensus 167 keig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecC
Confidence 88999999999999999887664
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-15 Score=163.75 Aligned_cols=203 Identities=19% Similarity=0.142 Sum_probs=98.5
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhhcCCCC---CCEEeccCCCCCC----CCcccccCC-CCCCEEcccCCcccc--
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTS---LEILDLRACYNLD----KLPDEIGKL-KSLTHLDISECFLLD-- 568 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~---L~~L~Ls~n~~~~----~lp~~~~~L-~~L~~L~Ls~n~l~~-- 568 (801)
+..+..+++|++|+|++|.+.+..+..+..+.. |++|++++|.+.. .+...+..+ ++|+.|++++|.+++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 344555556666666665544444444444433 6666666654431 122233444 556666666665542
Q ss_pred --CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc--cChhhhhcccCCcEEEe
Q 045877 569 --GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT--ENLSTVLAFKRLLQLKV 644 (801)
Q Consensus 569 --~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~--~~~~~l~~l~~L~~L~L 644 (801)
.++..+..+.+|++|+ +++|.... ......+..+..+++|+.|++++|.+.... .....+..+++|++|++
T Consensus 154 ~~~~~~~~~~~~~L~~L~---l~~n~l~~--~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 154 CEALAKALRANRDLKELN---LANNGIGD--AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred HHHHHHHHHhCCCcCEEE---CcCCCCch--HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 1222344444555555 44443000 000011223444567777777777665332 11234556667777777
Q ss_pred eccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC-----CCCcccCCCCCCCccEEE
Q 045877 645 SWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE-----KLPSWVHPYSFKNLKNLY 719 (801)
Q Consensus 645 ~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~-----~lp~~l~~~~l~~L~~L~ 719 (801)
++|.+.+... ..+ ..........|+.|++++|.++ .+...+. .+++|++|+
T Consensus 229 s~n~l~~~~~---------------~~l-------~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~--~~~~L~~l~ 284 (319)
T cd00116 229 GDNNLTDAGA---------------AAL-------ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA--EKESLLELD 284 (319)
T ss_pred CCCcCchHHH---------------HHH-------HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh--cCCCccEEE
Confidence 7776553110 000 0000001256777777777553 1222232 556777777
Q ss_pred eeCCcCCCCCC
Q 045877 720 IRGGRLNSLEG 730 (801)
Q Consensus 720 L~~n~l~~~~~ 730 (801)
+++|.++..+.
T Consensus 285 l~~N~l~~~~~ 295 (319)
T cd00116 285 LRGNKFGEEGA 295 (319)
T ss_pred CCCCCCcHHHH
Confidence 77777665543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-16 Score=140.48 Aligned_cols=161 Identities=24% Similarity=0.302 Sum_probs=142.3
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
+.++.++..|.||+|+++ .+|..+..+.+|+.|++.+| -++++|.+++.|++|+.|+++-| .+..+
T Consensus 29 Lf~~s~ITrLtLSHNKl~------------~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~l 94 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT------------VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNIL 94 (264)
T ss_pred ccchhhhhhhhcccCcee------------ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcC
Confidence 356778899999999995 55788999999999999987 67899999999999999999987 56789
Q ss_pred cccccCCCCCCEEcccCCcccc-CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccc
Q 045877 547 PDEIGKLKSLTHLDISECFLLD-GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKF 625 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~l~~-~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~ 625 (801)
|..|+.++-|+.|||++|.+.. .+|..|..++.|+.|+ +++|. ...+|..++++++|+.|.+..|.+..
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlraly---l~dnd-------fe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY---LGDND-------FEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH---hcCCC-------cccCChhhhhhcceeEEeeccCchhh
Confidence 9999999999999999998765 6888899999999999 89998 66789999999999999999998765
Q ss_pred cccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 626 QTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
. +..++.++.|+.|.+.+|.++-..+
T Consensus 165 l---pkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 165 L---PKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred C---cHHHHHHHHHHHHhcccceeeecCh
Confidence 4 7889999999999999999875443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-14 Score=152.76 Aligned_cols=266 Identities=16% Similarity=0.100 Sum_probs=178.5
Q ss_pred hhhhhccccccccccchhhcch----hhhhhccccCceeeecCCcccCC------CChhhhccCCCCCEEEcCCcccCCC
Q 045877 417 VEFEKIKKLFNFSLSLEEIENK----AKDCAMKRGRIETLFNVSEEFPE------FKYDWFSKLEKIKVLYLGRWQSTVD 486 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~i~~------~~~~~f~~l~~L~~L~Ls~n~l~~~ 486 (801)
.-|..+..|+.++++++.++.. ++..+...+.++.+.+..+.+.. .....|..+++|+.|+|++|.+..
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP- 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-
Confidence 4566777799999999998543 44455566778888888877662 223567788999999999998843
Q ss_pred CCCcccccchhhhHhhcCC---cCCceEeecCCCCCc----cCchhhcCC-CCCCEEeccCCCCCC----CCcccccCCC
Q 045877 487 DIPHIEIESTDYLKGLKNM---KELRLLSLQGMSGIQ----ELPSEISYL-TSLEILDLRACYNLD----KLPDEIGKLK 554 (801)
Q Consensus 487 ~~~~~~~~~~~lp~~l~~l---~~L~~L~Ls~n~~~~----~lp~~i~~L-~~L~~L~Ls~n~~~~----~lp~~~~~L~ 554 (801)
..+..+..+ ++|++|++++|.+.. .+...+..+ ++|+.|+|++|.+.+ .++..+..+.
T Consensus 96 ----------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 96 ----------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred ----------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 223333333 459999999987652 334456677 899999999997763 2345567788
Q ss_pred CCCEEcccCCcccc----CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccCh
Q 045877 555 SLTHLDISECFLLD----GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL 630 (801)
Q Consensus 555 ~L~~L~Ls~n~l~~----~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~ 630 (801)
+|++|++++|.+.+ .++..+..+++|++|+ +++|.... .........+..+++|++|++++|.+.... .
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~---L~~n~i~~--~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~--~ 238 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLD---LNNNGLTD--EGASALAETLASLKSLEVLNLGDNNLTDAG--A 238 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe---ccCCccCh--HHHHHHHHHhcccCCCCEEecCCCcCchHH--H
Confidence 99999999998874 2334456667889888 77776111 001122345677899999999999887533 2
Q ss_pred hhhh-----cccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCc
Q 045877 631 STVL-----AFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPS 705 (801)
Q Consensus 631 ~~l~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~ 705 (801)
..+. ..+.|++|++++|.++..... . +....+.. ++|+.|++++|.+...+.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~---------------~-------l~~~~~~~-~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAK---------------D-------LAEVLAEK-ESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHH---------------H-------HHHHHhcC-CCccEEECCCCCCcHHHH
Confidence 2222 237999999999987632110 0 11112222 689999999998764321
Q ss_pred -----ccCCCCC-CCccEEEeeCCcC
Q 045877 706 -----WVHPYSF-KNLKNLYIRGGRL 725 (801)
Q Consensus 706 -----~l~~~~l-~~L~~L~L~~n~l 725 (801)
.+. .. +.|++|++.+|.+
T Consensus 296 ~~~~~~~~--~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLLAESLL--EPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHh--hcCCchhhcccCCCCC
Confidence 111 23 6888888887753
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-11 Score=132.81 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=148.1
Q ss_pred CCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc
Q 045877 470 LEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549 (801)
Q Consensus 470 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~ 549 (801)
+..-...||+.|++ ..+|..++.+..|..|.|..| .+..+|..+++|..|.+|||+.|+ +..+|..
T Consensus 74 ltdt~~aDlsrNR~------------~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~ 139 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF------------SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDG 139 (722)
T ss_pred ccchhhhhcccccc------------ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChh
Confidence 34456788999988 467888888888999999886 677889999999999999999984 5677888
Q ss_pred ccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC
Q 045877 550 IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN 629 (801)
Q Consensus 550 ~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~ 629 (801)
++.|+ |+.|-+++|++ +.+|..++.+..|..|+ ++.|. +...+..++.+.+|+.|.+..|++...
T Consensus 140 lC~lp-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld---~s~ne-------i~slpsql~~l~slr~l~vrRn~l~~l--- 204 (722)
T KOG0532|consen 140 LCDLP-LKVLIVSNNKL-TSLPEEIGLLPTLAHLD---VSKNE-------IQSLPSQLGYLTSLRDLNVRRNHLEDL--- 204 (722)
T ss_pred hhcCc-ceeEEEecCcc-ccCCcccccchhHHHhh---hhhhh-------hhhchHHhhhHHHHHHHHHhhhhhhhC---
Confidence 88876 89999999985 47888888888888888 77777 566788888899999998888887655
Q ss_pred hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCC
Q 045877 630 LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHP 709 (801)
Q Consensus 630 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~ 709 (801)
+..+..| .|..||+++|++..... .+.. .++|++|-|.+|.+..-|..++.
T Consensus 205 p~El~~L-pLi~lDfScNkis~iPv---------------------------~fr~-m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 205 PEELCSL-PLIRLDFSCNKISYLPV---------------------------DFRK-MRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred CHHHhCC-ceeeeecccCceeecch---------------------------hhhh-hhhheeeeeccCCCCCChHHHHh
Confidence 4555544 57788888887764321 1112 26788888888888777766542
Q ss_pred -CCCCCccEEEeeCCc
Q 045877 710 -YSFKNLKNLYIRGGR 724 (801)
Q Consensus 710 -~~l~~L~~L~L~~n~ 724 (801)
+...--++|+...|+
T Consensus 256 kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccceeeeeeecchhcc
Confidence 233344677777774
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-10 Score=135.77 Aligned_cols=153 Identities=30% Similarity=0.359 Sum_probs=107.6
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcc--cCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ--STVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
...+.+.+-+|.+..+.. =..++.|++|-+.+|. +.. .-.+.|..++.|++|||++|.-.+.+|.
T Consensus 523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~-----------is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLE-----------ISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhhh-----------cCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 355666666666655432 1344578899888885 311 1234578899999999999888899999
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
+|++|.+|++|+|+++ .+..+|..+++|.+|.+|++..+.....+|..+..|.+|++|.++.-.... .....
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-------~~~~l 661 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-------DKLLL 661 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-------chhhH
Confidence 9999999999999996 566889999999999999999887666666666678888888854332111 22334
Q ss_pred ccccCCccCCeeEeec
Q 045877 605 KDLEKLEHLRKLTINI 620 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~ 620 (801)
.++.+|.+|+.|....
T Consensus 662 ~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 662 KELENLEHLENLSITI 677 (889)
T ss_pred Hhhhcccchhhheeec
Confidence 4555666666665533
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-11 Score=128.09 Aligned_cols=178 Identities=24% Similarity=0.305 Sum_probs=135.2
Q ss_pred hhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 420 EKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
-.+..-...||+.|++..++.. +..+..|..+.+..|+|..+ +..+.++..|..|||+.|++ ..+|
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~Nql------------S~lp 137 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQL------------SHLP 137 (722)
T ss_pred ccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchh------------hcCC
Confidence 3455566788999998876443 33455677777778887665 55677888888888888888 4667
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCc
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~ 579 (801)
..++.|+ |+.|-+++| .++.+|..++.+..|..||.+.| -+..+|..++.|.+|+.|.+..|.+. .+|..+..| .
T Consensus 138 ~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-p 212 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-P 212 (722)
T ss_pred hhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-c
Confidence 7777776 888888876 66788888888888888888887 45567778888888888888888754 677777755 4
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccc
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQ 626 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~ 626 (801)
|..|+ ++.|+ +..+|-.|.+|+.|++|-|.+|.+...
T Consensus 213 Li~lD---fScNk-------is~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 213 LIRLD---FSCNK-------ISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred eeeee---cccCc-------eeecchhhhhhhhheeeeeccCCCCCC
Confidence 77777 88887 667788888888888888888887654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-10 Score=118.61 Aligned_cols=265 Identities=14% Similarity=0.100 Sum_probs=142.3
Q ss_pred chhhhhhhhccccccccccchhhcch----hhhhhccccCceeeecCCcccCCC-----------ChhhhccCCCCCEEE
Q 045877 413 EQKAVEFEKIKKLFNFSLSLEEIENK----AKDCAMKRGRIETLFNVSEEFPEF-----------KYDWFSKLEKIKVLY 477 (801)
Q Consensus 413 ~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~-----------~~~~f~~l~~L~~L~ 477 (801)
+........+.+++.++||+|.|..- +..++.+.++|+...++. -+.+- ....+.++++|++||
T Consensus 20 ~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 20 KDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 33455667788899999999988643 334444555555544322 11110 011223344444444
Q ss_pred cCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCC
Q 045877 478 LGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSL 556 (801)
Q Consensus 478 Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L 556 (801)
||+|-|-...+ ..+-..+.++..|+.|.|.+|.+ +..- ..+++ -|..|. .+ .-++.-++|
T Consensus 99 LSDNA~G~~g~-------~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~--al~~l~--~~-------kk~~~~~~L 159 (382)
T KOG1909|consen 99 LSDNAFGPKGI-------RGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGR--ALFELA--VN-------KKAASKPKL 159 (382)
T ss_pred ccccccCccch-------HHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHH--HHHHHH--HH-------hccCCCcce
Confidence 44444421110 12223333444444444444421 1111 11110 011111 01 112334578
Q ss_pred CEEcccCCcccc----CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc--cCh
Q 045877 557 THLDISECFLLD----GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT--ENL 630 (801)
Q Consensus 557 ~~L~Ls~n~l~~----~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~--~~~ 630 (801)
+++...+|++.. .+...|...+.|+.+. +..|...+.+. ......|.++++|++|||..|.++... ...
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr---~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVR---LSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEE---EecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 888888887532 2223456667777776 66665211111 112346788999999999999886543 224
Q ss_pred hhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC-----CCc
Q 045877 631 STVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK-----LPS 705 (801)
Q Consensus 631 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~-----lp~ 705 (801)
..+..+++|+.|++++|.+.......+ . ..+... .+.|+.|.|.+|.++. +-.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~-----------~----------~al~~~-~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAF-----------V----------DALKES-APSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred HHhcccchheeecccccccccccHHHH-----------H----------HHHhcc-CCCCceeccCcchhHHHHHHHHHH
Confidence 567888899999999998875443211 1 111111 3689999999987653 222
Q ss_pred ccCCCCCCCccEEEeeCCcCC
Q 045877 706 WVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 706 ~l~~~~l~~L~~L~L~~n~l~ 726 (801)
.+. ..+.|.+|+|++|.+.
T Consensus 293 ~~~--ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 293 CMA--EKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHh--cchhhHHhcCCccccc
Confidence 333 6889999999999984
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.6e-09 Score=116.52 Aligned_cols=197 Identities=22% Similarity=0.268 Sum_probs=151.9
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccC-CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKL-EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
.++++.|++........ ..+.+..|.+.+|.+..+++ ....+ .+|+.|++++|.+ ..+|..++.+
T Consensus 97 ~l~~~~~~~~~~~~~~~-~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i------------~~l~~~~~~l 162 (394)
T COG4886 97 SLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKI------------ESLPSPLRNL 162 (394)
T ss_pred eeeccccccccCchhhh-cccceeEEecCCcccccCcc-ccccchhhcccccccccch------------hhhhhhhhcc
Confidence 46677777643333332 34678888888888887754 23444 3899999999988 4566778999
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
++|+.|++++| .+..+|...+.+.+|+.|++++| .+..+|..+..+..|+.|.+++|.+. .++..+.++.++..|.
T Consensus 163 ~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~- 238 (394)
T COG4886 163 PNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE- 238 (394)
T ss_pred ccccccccCCc-hhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccc-
Confidence 99999999997 56778877778999999999998 56677877777778999999999633 4566788888888887
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
+.+|. ....+..++.+++|+.|++++|.+.... .+..+.+|+.|++++|.+....+
T Consensus 239 --l~~n~-------~~~~~~~~~~l~~l~~L~~s~n~i~~i~----~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 239 --LSNNK-------LEDLPESIGNLSNLETLDLSNNQISSIS----SLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred --cCCce-------eeeccchhccccccceeccccccccccc----cccccCccCEEeccCccccccch
Confidence 77777 4444678889999999999999987754 28889999999999998876543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-09 Score=108.91 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=92.4
Q ss_pred cccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccc
Q 045877 606 DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQH 685 (801)
Q Consensus 606 ~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 685 (801)
.+.....|+.|||++|.|.... .++.-++.++.|++++|.+..+... ..
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~nL----------------------------a~ 327 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQNL----------------------------AE 327 (490)
T ss_pred ecchHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehhh----------------------------hh
Confidence 3444567888899999887663 5666778889999999887754311 11
Q ss_pred cCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc--------Cc
Q 045877 686 VESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ--------EL 757 (801)
Q Consensus 686 ~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~--------~~ 757 (801)
.++|+.|||++|.+..+..|-. .+.|.+.|.|++|.|..+.. + ..|-+|.+|+++.|++. |.
T Consensus 328 -L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N~iE~LSG--L-----~KLYSLvnLDl~~N~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 328 -LPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQNKIETLSG--L-----RKLYSLVNLDLSSNQIEELDEVNHIGN 397 (490)
T ss_pred -cccceEeecccchhHhhhhhHh--hhcCEeeeehhhhhHhhhhh--h-----HhhhhheeccccccchhhHHHhccccc
Confidence 3688999999998888888876 88899999999998766643 2 24567788888888876 77
Q ss_pred CCCCceeeccCCC
Q 045877 758 FPKLEYLEKFKCH 770 (801)
Q Consensus 758 ~p~L~~L~l~~c~ 770 (801)
+|+|+.|.+.+.|
T Consensus 398 LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 398 LPCLETLRLTGNP 410 (490)
T ss_pred ccHHHHHhhcCCC
Confidence 8888888877754
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=119.86 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=86.1
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~ 551 (801)
.++.|+|++|.+.+ .+|..++.+++|++|+|++|.+.+.+|..++.|++|++|+|++|.+.+.+|..++
T Consensus 419 ~v~~L~L~~n~L~g-----------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRG-----------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccc-----------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 36788888888853 4577888889999999998888888888888899999999999888888888888
Q ss_pred CCCCCCEEcccCCccccCCCcccCCC-CcccccccccccCCc
Q 045877 552 KLKSLTHLDISECFLLDGIPKKLSLL-SKLQVLKGFVISDHA 592 (801)
Q Consensus 552 ~L~~L~~L~Ls~n~l~~~~p~~~~~L-~~L~~L~~~~l~~n~ 592 (801)
+|++|++|+|++|.+.+.+|..++.+ .++..++ +.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~---~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNA 526 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEE---ecCCc
Confidence 99999999999998888888877653 3444454 55554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-09 Score=107.00 Aligned_cols=142 Identities=21% Similarity=0.182 Sum_probs=96.0
Q ss_pred CCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 545 KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 545 ~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
..-..+..++.|+.||||+|.++ .+..+..-++.++.|+ ++.|. + .....+..|.+|+.|||++|.++
T Consensus 275 ~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~---lS~N~-------i-~~v~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 275 SALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLI---LSQNR-------I-RTVQNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred ceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEe---ccccc-------e-eeehhhhhcccceEeecccchhH
Confidence 33344555677888888888754 5666667777777777 77776 2 23455777888888888888776
Q ss_pred ccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCC
Q 045877 625 FQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLP 704 (801)
Q Consensus 625 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp 704 (801)
... .+-..+-+++.|.|+.|.+.... .| - . .-+|..||+++|++..+.
T Consensus 343 ~~~---Gwh~KLGNIKtL~La~N~iE~LS-----------------GL----------~-K-LYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 343 ECV---GWHLKLGNIKTLKLAQNKIETLS-----------------GL----------R-K-LYSLVNLDLSSNQIEELD 390 (490)
T ss_pred hhh---hhHhhhcCEeeeehhhhhHhhhh-----------------hh----------H-h-hhhheeccccccchhhHH
Confidence 553 44455667777888777654211 11 0 1 257888888888877765
Q ss_pred cccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 705 SWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 705 ~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
..-..+++|+|+.|.|.+|.+.+++.
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred HhcccccccHHHHHhhcCCCccccch
Confidence 54334589999999999998887765
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=116.78 Aligned_cols=112 Identities=22% Similarity=0.218 Sum_probs=93.7
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~ 527 (801)
.+..|.+.+|.+.+..+..|..+++|+.|+|++|.+++ .+|..++.+++|++|+|++|.+.+.+|..++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-----------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-----------NIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-----------cCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 36677788888887778888999999999999998853 5678889999999999999988899999999
Q ss_pred CCCCCCEEeccCCCCCCCCcccccCC-CCCCEEcccCCccccCC
Q 045877 528 YLTSLEILDLRACYNLDKLPDEIGKL-KSLTHLDISECFLLDGI 570 (801)
Q Consensus 528 ~L~~L~~L~Ls~n~~~~~lp~~~~~L-~~L~~L~Ls~n~l~~~~ 570 (801)
+|++|++|+|++|.+.+.+|..++.+ .++..+++.+|......
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 99999999999999999999888764 46778888888654333
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-08 Score=113.59 Aligned_cols=75 Identities=35% Similarity=0.527 Sum_probs=33.5
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+|++|++++| -+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|++++|++. .+|..+..+..|++|.
T Consensus 141 nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 141 NLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD 215 (394)
T ss_pred hccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhh
Confidence 4555555554 23344444455555555555554 22333333334445555555555432 3333333333344444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.7e-09 Score=108.33 Aligned_cols=237 Identities=18% Similarity=0.134 Sum_probs=135.0
Q ss_pred hhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCc----cCchh-------hcCCCCCC
Q 045877 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQ----ELPSE-------ISYLTSLE 533 (801)
Q Consensus 465 ~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~----~lp~~-------i~~L~~L~ 533 (801)
.....+..+..|+||+|.+-... ...+-..+.+.++|+..++++ -++| ++|+. +-..++|+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EA-------a~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEA-------ARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HHhcccCceEEEeccCCchhHHH-------HHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 34567788899999999772211 123456677788899999887 3444 34433 33567888
Q ss_pred EEeccCCCCCCCCccc----ccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccC
Q 045877 534 ILDLRACYNLDKLPDE----IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEK 609 (801)
Q Consensus 534 ~L~Ls~n~~~~~lp~~----~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~ 609 (801)
+||||+|.+...-+.. +.++..|++|+|.+|.+...--..++ ..|..|. . + .-.+.
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---~--~-------------kk~~~ 155 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---V--N-------------KKAAS 155 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---H--H-------------hccCC
Confidence 8999888665444433 45577888888888875311000111 1233322 1 1 12234
Q ss_pred CccCCeeEeeccccccccc--ChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccC
Q 045877 610 LEHLRKLTININSEKFQTE--NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVE 687 (801)
Q Consensus 610 L~~L~~L~L~~n~~~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~ 687 (801)
-++|+++...+|++..... ....|...+.|+.+.+..|.+........ ..++ ..+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al---------------------~eal--~~~ 212 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL---------------------AEAL--EHC 212 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHH---------------------HHHH--HhC
Confidence 4567777777777654431 13456666777888877776653221000 0111 113
Q ss_pred CCccEEEccCCCCCC-----CCcccCCCCCCCccEEEeeCCcCCCCCCCcc-cccceecccccccccccccccc
Q 045877 688 SKLEKLDFQCFPDEK-----LPSWVHPYSFKNLKNLYIRGGRLNSLEGSEW-ETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~-----lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f-~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
++|+.|||..|.++. +...+. .+++|+.|++++|.+..-+...| ..++.. .++|+.|.+.+|.++
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~--s~~~L~El~l~dcll~~~Ga~a~~~al~~~-~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALS--SWPHLRELNLGDCLLENEGAIAFVDALKES-APSLEVLELAGNEIT 283 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhc--ccchheeecccccccccccHHHHHHHHhcc-CCCCceeccCcchhH
Confidence 678888887775543 111222 45678888888888776655222 222222 556666666666665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.5e-09 Score=110.51 Aligned_cols=217 Identities=18% Similarity=0.139 Sum_probs=127.2
Q ss_pred hhhhhhccccccccccchhhcchhh-hhhccccCceeeecCCcccCCCCh--hhhccCCCCCEEEcCCcccCCCCCCccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAK-DCAMKRGRIETLFNVSEEFPEFKY--DWFSKLEKIKVLYLGRWQSTVDDIPHIE 492 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~--~~f~~l~~L~~L~Ls~n~l~~~~~~~~~ 492 (801)
+..=.++++|+.+.|.+..+.-... .....+++++.|+++.|-|....+ .....+++|+.|+|+.|++....
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~----- 188 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI----- 188 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc-----
Confidence 3344566667777777666544332 344456777777777776655432 44567778888888888773211
Q ss_pred ccchhhhHhhcCCcCCceEeecCCCCCcc-CchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCC
Q 045877 493 IESTDYLKGLKNMKELRLLSLQGMSGIQE-LPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIP 571 (801)
Q Consensus 493 ~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p 571 (801)
.+ ..-..+.+|+.|.|+.|.+... +-..+..+++|+.|+|.+|......-....-+..|+.|||++|.+.. .+
T Consensus 189 ---~s--~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~ 262 (505)
T KOG3207|consen 189 ---SS--NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FD 262 (505)
T ss_pred ---cc--cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cc
Confidence 00 0112566777788887755432 22334557788888888775333333334456677888888777542 22
Q ss_pred --cccCCCCcccccccccccCCcchhhhhhcccCccc-----ccCCccCCeeEeecccccccccChhhhhcccCCcEEEe
Q 045877 572 --KKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD-----LEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644 (801)
Q Consensus 572 --~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-----l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L 644 (801)
...+.++.|..|. ++.+. +.....++. ....++|++|++..|++..-. ....+..+.+|+.|.+
T Consensus 263 ~~~~~~~l~~L~~Ln---ls~tg-----i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~-sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLN---LSSTG-----IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR-SLNHLRTLENLKHLRI 333 (505)
T ss_pred cccccccccchhhhh---ccccC-----cchhcCCCccchhhhcccccceeeecccCcccccc-ccchhhccchhhhhhc
Confidence 2356666666666 55544 122222222 345677888888888774321 1455566677777777
Q ss_pred eccCCCCC
Q 045877 645 SWGGGSAN 652 (801)
Q Consensus 645 ~~n~l~~~ 652 (801)
..|.++..
T Consensus 334 ~~n~ln~e 341 (505)
T KOG3207|consen 334 TLNYLNKE 341 (505)
T ss_pred cccccccc
Confidence 77777643
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-09 Score=112.63 Aligned_cols=192 Identities=20% Similarity=0.190 Sum_probs=114.0
Q ss_pred hcCCcCCceEeecCCCCCccCc--hhhcCCCCCCEEeccCCCCCCCC--cccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 502 LKNMKELRLLSLQGMSGIQELP--SEISYLTSLEILDLRACYNLDKL--PDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp--~~i~~L~~L~~L~Ls~n~~~~~l--p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
=.++.+|+...|.++ -++..+ .....|++++.|||++|-+.... -.....|++|+.|+|+.|++.-..
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~------- 188 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI------- 188 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc-------
Confidence 367889999999875 555555 35677899999999998443321 233456888888888888754111
Q ss_pred CcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 578 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
+.+. -..++.|+.|.|+.|.++... ....+..+++|+.|+|..|......
T Consensus 189 -----------~s~~--------------~~~l~~lK~L~l~~CGls~k~-V~~~~~~fPsl~~L~L~~N~~~~~~---- 238 (505)
T KOG3207|consen 189 -----------SSNT--------------TLLLSHLKQLVLNSCGLSWKD-VQWILLTFPSLEVLYLEANEIILIK---- 238 (505)
T ss_pred -----------cccc--------------hhhhhhhheEEeccCCCCHHH-HHHHHHhCCcHHHhhhhccccccee----
Confidence 1111 013556677777777776432 1233556778888888777522111
Q ss_pred CCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccc
Q 045877 658 EPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVK 737 (801)
Q Consensus 658 ~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~ 737 (801)
......+..|+.|+|++|.+..++..-....|+.|..|+++.|.+..+......++.
T Consensus 239 -----------------------~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 239 -----------------------ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred -----------------------cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 111122466777777777766666433334777777777777776665432222221
Q ss_pred -eeccccccccccccccc
Q 045877 738 -VLRLKYLNELKIDWKGL 754 (801)
Q Consensus 738 -~l~L~~L~~L~l~~n~l 754 (801)
.-.+..|++|++..|.+
T Consensus 296 kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhcccccceeeecccCcc
Confidence 12345555555555555
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-09 Score=99.40 Aligned_cols=131 Identities=24% Similarity=0.287 Sum_probs=45.7
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc-CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK-NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~ 545 (801)
+.+..+++.|+|++|.|+. .+.++ .+.+|+.|+|++|. +..+. .+..|+.|++|++++|.+. .
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-------------Ie~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~-~ 78 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-------------IENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRIS-S 78 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S
T ss_pred ccccccccccccccccccc-------------ccchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCC-c
Confidence 4556667888888887742 13344 46778888888763 44453 3667777888888877544 3
Q ss_pred Ccccc-cCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 546 LPDEI-GKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 546 lp~~~-~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
+...+ ..+++|++|++++|++.. + .....+..+++|+.|+|.+|.+.
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~--------l------------------------~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISD--------L------------------------NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---S--------C------------------------CCCGGGGG-TT--EEE-TT-GGG
T ss_pred cccchHHhCCcCCEEECcCCcCCC--------h------------------------HHhHHHHcCCCcceeeccCCccc
Confidence 43334 357777777777776531 1 11234556778888888888876
Q ss_pred ccccC-hhhhhcccCCcEEEee
Q 045877 625 FQTEN-LSTVLAFKRLLQLKVS 645 (801)
Q Consensus 625 ~~~~~-~~~l~~l~~L~~L~L~ 645 (801)
....- ...+..+++|+.||-.
T Consensus 127 ~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 127 EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GSTTHHHHHHHH-TT-SEETTE
T ss_pred chhhHHHHHHHHcChhheeCCE
Confidence 44211 3457788888888754
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.7e-08 Score=94.92 Aligned_cols=128 Identities=21% Similarity=0.246 Sum_probs=48.9
Q ss_pred ccCceeeecCCcccCCCChhhhc-cCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 446 RGRIETLFNVSEEFPEFKYDWFS-KLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~f~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
..+++.|.+.+|.|+.+. .+. .+.+|++|+|++|.++.. +.+..+++|++|++++|. +..+..
T Consensus 18 ~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l-------------~~l~~L~~L~~L~L~~N~-I~~i~~ 81 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL-------------EGLPGLPRLKTLDLSNNR-ISSISE 81 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---------------TT----TT--EEE--SS----S-CH
T ss_pred cccccccccccccccccc--chhhhhcCCCEEECCCCCCccc-------------cCccChhhhhhcccCCCC-CCcccc
Confidence 335566666666666543 233 467788888888888432 356678888888888874 445544
Q ss_pred hh-cCCCCCCEEeccCCCCCCCC-cccccCCCCCCEEcccCCccccCCCc----ccCCCCcccccccccccC
Q 045877 525 EI-SYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPK----KLSLLSKLQVLKGFVISD 590 (801)
Q Consensus 525 ~i-~~L~~L~~L~Ls~n~~~~~l-p~~~~~L~~L~~L~Ls~n~l~~~~p~----~~~~L~~L~~L~~~~l~~ 590 (801)
.+ ..+++|++|+|++|++...- -..+..+++|++|+|.+|.++.. +. .+..+++|+.||+..+..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETTS
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEccH
Confidence 44 46888888888888653311 13466788888999988887642 22 256788888888554433
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.6e-08 Score=107.78 Aligned_cols=201 Identities=25% Similarity=0.264 Sum_probs=120.8
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp 547 (801)
..+..++.+++..|.+. .+...+..+.+|.+|++.+| .+..+...+..+++|++|+|++|.+...
T Consensus 69 ~~l~~l~~l~l~~n~i~------------~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-- 133 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA------------KILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-- 133 (414)
T ss_pred HHhHhHHhhccchhhhh------------hhhcccccccceeeeecccc-chhhcccchhhhhcchheeccccccccc--
Confidence 45566667777777663 22234677777888888776 3444444466777788888877744433
Q ss_pred ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCccc-ccCCccCCeeEeeccccccc
Q 045877 548 DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD-LEKLEHLRKLTININSEKFQ 626 (801)
Q Consensus 548 ~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~-l~~L~~L~~L~L~~n~~~~~ 626 (801)
..+..+..|+.|++++|.+.. + ..+..+.+|+.++ ++.|. +..+... +..+.+|+.+++.+|.+...
T Consensus 134 ~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~---l~~n~-------i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLD---LSYNR-------IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cchhhccchhhheeccCcchh-c-cCCccchhhhccc---CCcch-------hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 235566667777777777642 1 2344566666666 66665 2111111 46666677777777765443
Q ss_pred ccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCC--CccEEEccCCCCCCCC
Q 045877 627 TENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVES--KLEKLDFQCFPDEKLP 704 (801)
Q Consensus 627 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~--~L~~L~L~~n~~~~lp 704 (801)
. .+..+..+..+++..|.+..... ... .. +|+.+++++|.+..++
T Consensus 202 ~----~~~~~~~l~~~~l~~n~i~~~~~---------------------------l~~--~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 202 E----GLDLLKKLVLLSLLDNKISKLEG---------------------------LNE--LVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred c----chHHHHHHHHhhcccccceeccC---------------------------ccc--chhHHHHHHhcccCcccccc
Confidence 2 23333344444555555443211 000 11 3889999999888776
Q ss_pred cccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 705 SWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 705 ~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
..+. .+.++..|++.+|++..+..
T Consensus 249 ~~~~--~~~~l~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 249 EGLE--NLKNLPVLDLSSNRISNLEG 272 (414)
T ss_pred cccc--ccccccccchhhcccccccc
Confidence 5544 78899999999998776654
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.6e-08 Score=108.30 Aligned_cols=198 Identities=26% Similarity=0.268 Sum_probs=122.1
Q ss_pred hhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 420 EKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
..+..+..+.+..|.|.. .-.....+.++..|.+..|.|..+... +..+.+|++|+|++|.|+..
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i------------- 133 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL------------- 133 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc-------------
Confidence 455666666777787766 222344567777777777777765322 56788888888888887532
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc-ccCCCCCCEEcccCCccccCCCcccCCCC
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~-~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
..+..+..|+.|++++|. +..+. .+..+..|+.+++++|.+...-+ . ...+.+|+.+++.+|.+... ..+..+.
T Consensus 134 ~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~ 208 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLK 208 (414)
T ss_pred cchhhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHH
Confidence 345666778888888874 44443 35557888888888875544322 1 46777888888888875421 2233333
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCcc--CCeeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEH--LRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~--L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
.+..++ +..|. . .....+..+.. |+.+++.+|.+.... ..+..+..+..|++..|.+..
T Consensus 209 ~l~~~~---l~~n~-------i-~~~~~l~~~~~~~L~~l~l~~n~i~~~~---~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 209 KLVLLS---LLDNK-------I-SKLEGLNELVMLHLRELYLSGNRISRSP---EGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhh---ccccc-------c-eeccCcccchhHHHHHHhcccCcccccc---ccccccccccccchhhccccc
Confidence 333333 44444 1 12223333333 778888888766531 345666777778887777654
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-07 Score=73.63 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=26.9
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
+|+.|++++|+|+.+.+..|..+++|++|++.+|.+..+++..|.++++|+.|+|++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444555555544444444444444444444444444444444444444444444444
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-07 Score=72.48 Aligned_cols=59 Identities=31% Similarity=0.312 Sum_probs=28.6
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
+|++|+|++|.+...-+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555543222222344555555555555554444434455555555555555554
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-08 Score=99.03 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=65.1
Q ss_pred cccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccc
Q 045877 606 DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQH 685 (801)
Q Consensus 606 ~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 685 (801)
.+.+-.+|+.|+|+.+.--.....--.+.+++.|..|+|+||.+..... .....+
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V-------------------------tv~V~h 283 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV-------------------------TVAVAH 283 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-------------------------hHHHhh
Confidence 3445556666666655321111112345667777777777776654321 111222
Q ss_pred cCCCccEEEccCCCC----CCCCcccCCCCCCCccEEEeeCCc-CCCCCC---Ccccccceeccccccccccccccc-c-
Q 045877 686 VESKLEKLDFQCFPD----EKLPSWVHPYSFKNLKNLYIRGGR-LNSLEG---SEWETVKVLRLKYLNELKIDWKGL-Q- 755 (801)
Q Consensus 686 ~~~~L~~L~L~~n~~----~~lp~~l~~~~l~~L~~L~L~~n~-l~~~~~---~~f~~L~~l~L~~L~~L~l~~n~l-~- 755 (801)
...+|+.|+|+|+.- ..+.... ..+|+|..|||++|. |+.-.. -.|+.|+++.+..|.-+. -+.+ .
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l 359 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLEL 359 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHH--HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeee
Confidence 335667777766421 1111111 366777777777765 322111 123333333333333222 1111 1
Q ss_pred CcCCCCceeeccCCC
Q 045877 756 ELFPKLEYLEKFKCH 770 (801)
Q Consensus 756 ~~~p~L~~L~l~~c~ 770 (801)
+..|.|.+|++.+|-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 567777777777753
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.5e-08 Score=106.13 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=102.3
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhcc----------CCCCCEEEcCCcccC
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSK----------LEKIKVLYLGRWQST 484 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~----------l~~L~~L~Ls~n~l~ 484 (801)
.+.++..+++|++|.|....|.... +...--.+|+.|+ ..|.+..+ ...|.. .-.|.+.+.++|.++
T Consensus 101 ~pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LI-C~~Sl~Al-~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 101 EPISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLI-CHNSLDAL-RHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CCceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhh-hhccHHHH-HHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 3788899999999999998886521 1111111222221 11111110 001110 124667777777773
Q ss_pred CCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc-cccCCCCCCEEcccC
Q 045877 485 VDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD-EIGKLKSLTHLDISE 563 (801)
Q Consensus 485 ~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~-~~~~L~~L~~L~Ls~ 563 (801)
.+-.++.-++.|+.|+|++|.+... ..+..|++|++|||++|.+ ..+|. ....+. |+.|.+++
T Consensus 178 ------------~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 178 ------------LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred ------------hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh-ccccccchhhhh-heeeeecc
Confidence 3445666677778888888755433 2567777888888887743 33443 222333 77777777
Q ss_pred CccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 564 CFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 564 n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
|.++.. .++.+|++|+.|+ ++.|. +.......-+..|..|+.|+|.+|.+-
T Consensus 242 N~l~tL--~gie~LksL~~LD---lsyNl-----l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLD---LSYNL-----LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccc---hhHhh-----hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 765432 2456666666666 66665 222223344556667777777777653
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-06 Score=87.02 Aligned_cols=231 Identities=16% Similarity=0.140 Sum_probs=137.4
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----Cc-------hhhcCCCCCCEEe
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----LP-------SEISYLTSLEILD 536 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp-------~~i~~L~~L~~L~ 536 (801)
.-+..+..++||+|-|.... ...+...+.+-.+|+..+++.- +++. ++ ..+-++++|+..+
T Consensus 27 ~~~d~~~evdLSGNtigtEA-------~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEA-------MEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HhhcceeEEeccCCcccHHH-------HHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 34667888899998773211 1344556667788888888873 4443 23 2345789999999
Q ss_pred ccCCCCCCCCccc----ccCCCCCCEEcccCCccccCCCc-ccCCCCcccccccccccCCcchhhhhhcccCcccccCCc
Q 045877 537 LRACYNLDKLPDE----IGKLKSLTHLDISECFLLDGIPK-KLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLE 611 (801)
Q Consensus 537 Ls~n~~~~~lp~~----~~~L~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~ 611 (801)
||.|.+....|.. +++-+.|.||.|++|.+. .+.. .++ +.|++|- .|. -...-+
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rig--kal~~la-----~nK-------------Kaa~kp 157 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIG--KALFHLA-----YNK-------------KAADKP 157 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHH--HHHHHHH-----HHh-------------hhccCC
Confidence 9999887766654 456678999999998753 2211 121 1233332 121 223456
Q ss_pred cCCeeEeecccccccccC--hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCC
Q 045877 612 HLRKLTININSEKFQTEN--LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESK 689 (801)
Q Consensus 612 ~L~~L~L~~n~~~~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 689 (801)
.|+......|++...... ...+..-..|+.+.+..|.+...... .+-. .+... ..+
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~------------~L~~--------~gl~y--~~~ 215 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT------------MLAF--------LGLFY--SHS 215 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH------------HHHH--------HHHHH--hCc
Confidence 788888888877544311 12233335788888888876532110 0000 11111 368
Q ss_pred ccEEEccCCCCCC---------CCcccCCCCCCCccEEEeeCCcCCCCCCCc-ccccceecccccccccccccccc
Q 045877 690 LEKLDFQCFPDEK---------LPSWVHPYSFKNLKNLYIRGGRLNSLEGSE-WETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 690 L~~L~L~~n~~~~---------lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~-f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
|+.|+|+.|.++. ++.| +.|+.|.+.+|.++.-+... +........++|..|...+|...
T Consensus 216 LevLDlqDNtft~~gS~~La~al~~W------~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 216 LEVLDLQDNTFTLEGSRYLADALCEW------NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ceeeeccccchhhhhHHHHHHHhccc------chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 8888888876543 3444 45889999999887665422 22222334566666666777654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.7e-07 Score=102.61 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=117.6
Q ss_pred hhhhccCCCCCEEEcCCcccCCCC-CCccc-----ccc----hhhhHhhc-------C---CcCCceEeecCCCCCccCc
Q 045877 464 YDWFSKLEKIKVLYLGRWQSTVDD-IPHIE-----IES----TDYLKGLK-------N---MKELRLLSLQGMSGIQELP 523 (801)
Q Consensus 464 ~~~f~~l~~L~~L~Ls~n~l~~~~-~~~~~-----~~~----~~lp~~l~-------~---l~~L~~L~Ls~n~~~~~lp 523 (801)
|-.+..++.||+|.|.++.+.... +-.+. +.+ ..+-..|. + ...|...+.++|. ...+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-LVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-HHhHH
Confidence 334567889999999999884321 00000 000 00111111 1 1346777777764 44566
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcc-cCCCCcccccccccccCCcchhhhhhccc
Q 045877 524 SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKK-LSLLSKLQVLKGFVISDHAEDDRRWKRWC 602 (801)
Q Consensus 524 ~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~-~~~L~~L~~L~~~~l~~n~~~~~~~~~~~ 602 (801)
.++.-++.|+.|+|++|++...- .+..|++|+||||++|.+. .+|.. ...+. |+.|. +.+|. ..
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~---lrnN~--------l~ 245 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN---LRNNA--------LT 245 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeee---ecccH--------HH
Confidence 77888999999999999876653 7889999999999999865 45542 33343 88887 88887 23
Q ss_pred CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCC
Q 045877 603 SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 603 ~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
....+.+|.+|+.||+++|-+.+..+ ...+..+..|+.|+|.+|.+.
T Consensus 246 tL~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 246 TLRGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence 46678899999999999998876543 456777888999999999875
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.9e-07 Score=87.87 Aligned_cols=267 Identities=17% Similarity=0.123 Sum_probs=138.7
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
....+..+..++.++||.|-|.......+.+ .+.+-++|++.+++.- +++.....+.-.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~--------------------~ia~~~~L~vvnfsd~-ftgr~kde~~~~ 80 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCN--------------------VIANVRNLRVVNFSDA-FTGRDKDELYSN 80 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHH--------------------HHhhhcceeEeehhhh-hhcccHHHHHHH
Confidence 4456667888999999999987654433321 1223344555555543 222111111111
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCch----hhcCCCCCCEEeccCCCCCCCCc-cc-------------ccCCCCC
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPS----EISYLTSLEILDLRACYNLDKLP-DE-------------IGKLKSL 556 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~----~i~~L~~L~~L~Ls~n~~~~~lp-~~-------------~~~L~~L 556 (801)
..-+...+.+|++|+..+|+.|.+....|+ .|+.-+.|.+|.|++|. .|.+. .. ..+-+.|
T Consensus 81 L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 81 LVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCc
Confidence 112334556677777777777655444443 34556677777777763 33221 11 2234567
Q ss_pred CEEcccCCccccCCC----cccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccccc--Ch
Q 045877 557 THLDISECFLLDGIP----KKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTE--NL 630 (801)
Q Consensus 557 ~~L~Ls~n~l~~~~p----~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~--~~ 630 (801)
+.+....|++...-- ..+..-.+|+.+. +..|..-+.+.... ....+..+.+|+.|||..|.++.... ..
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vk---i~qNgIrpegv~~L-~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVK---IQQNGIRPEGVTML-AFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEE---eeecCcCcchhHHH-HHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 888877777532110 1122234455554 44444111000000 01234567788888888887764431 13
Q ss_pred hhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC--C-----C
Q 045877 631 STVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE--K-----L 703 (801)
Q Consensus 631 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~--~-----l 703 (801)
..+..++.|+.|.+..|-++...... .++.. .....++|..|.+++|... . +
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~-----------v~~~f----------~e~~~p~l~~L~~~Yne~~~~~i~~~~l 294 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKS-----------VLRRF----------NEKFVPNLMPLPGDYNERRGGIILDISL 294 (388)
T ss_pred HHhcccchhhhccccchhhccccHHH-----------HHHHh----------hhhcCCCccccccchhhhcCceeeeech
Confidence 45667777888888888776543221 11111 1111256777777665321 1 2
Q ss_pred CcccCCCCCCCccEEEeeCCcCCCCC
Q 045877 704 PSWVHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 704 p~~l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
+.... ..+|-|..|.+.+|+|....
T Consensus 295 ~~~e~-~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 295 NEFEQ-DAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhhhh-cccHHHHHHHHccCcchhHH
Confidence 22222 46777788888888776553
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.9e-06 Score=84.52 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=31.9
Q ss_pred CCcCCceEeecCCCCCc--cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCc
Q 045877 504 NMKELRLLSLQGMSGIQ--ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~--~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
.+.+++.|||.+|.+.. ++-.-+.+|+.|++|+|+.|.+...+-..=..+.+|+.|-|.+..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 45667777777764332 222333556677777777665443221111234456666665544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.1e-06 Score=73.52 Aligned_cols=114 Identities=21% Similarity=0.185 Sum_probs=74.6
Q ss_pred ccccccccccchhhcchh--hhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 422 IKKLFNFSLSLEEIENKA--KDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
-+.+..+||++++|-.+. +........|....++.|.+..+++.+-..++.++.|+|++|.+ ..+|
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei------------sdvP 93 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI------------SDVP 93 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh------------hhch
Confidence 345566788888776543 23344556666777777777777776666777777777777777 3556
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~ 549 (801)
..+..++.||.|+++.|. +...|..|..|.+|-.|+..+|. ..++|..
T Consensus 94 eE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 667777777777777763 34556666667777777776663 3344443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.4e-06 Score=84.94 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=29.3
Q ss_pred ccccccccchhhcchhh-hhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 424 KLFNFSLSLEEIENKAK-DCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
.|++||||+..|+...- ..+..+.+|+.|.+.++++..-.-..+.+-.+|+.|+|+.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 47778888777754321 22223344444445454444444444444455555555544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=2.6e-05 Score=78.65 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=89.9
Q ss_pred CCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCC
Q 045877 609 KLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVES 688 (801)
Q Consensus 609 ~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~ 688 (801)
..+.++.|||.+|.++.=.+....+.+++.|+.|+|++|.+...+.. .. ....
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--------------------------lp-~p~~ 121 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--------------------------LP-LPLK 121 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--------------------------Cc-cccc
Confidence 45678999999999875433356678999999999999998865421 11 1137
Q ss_pred CccEEEccCCCC--CCCCcccCCCCCCCccEEEeeCCcCCCCCC-----Ccc-cccceeccc-cccccccccccccCcCC
Q 045877 689 KLEKLDFQCFPD--EKLPSWVHPYSFKNLKNLYIRGGRLNSLEG-----SEW-ETVKVLRLK-YLNELKIDWKGLQELFP 759 (801)
Q Consensus 689 ~L~~L~L~~n~~--~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~-----~~f-~~L~~l~L~-~L~~L~l~~n~l~~~~p 759 (801)
+|+.|.|.|..+ ....+.+ ..+|.++.|+++.|.+..+.. ..+ +.++++++. ++..+.++-|.+...||
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l--~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSL--DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhh--hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 899999987543 2222333 378889999999996433321 222 245555543 44444566677778899
Q ss_pred CCceeeccCCC
Q 045877 760 KLEYLEKFKCH 770 (801)
Q Consensus 760 ~L~~L~l~~c~ 770 (801)
++..+.+..||
T Consensus 200 nv~sv~v~e~P 210 (418)
T KOG2982|consen 200 NVNSVFVCEGP 210 (418)
T ss_pred cchheeeecCc
Confidence 99988888875
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00045 Score=74.98 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=49.3
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
+..+.+++.|++++|.++ .+|. -..+|+.|.+++|.....+|..+. .+|++|++++|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~------------sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE------------SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCc------------ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc
Confidence 455788888888888763 3341 123588888888766677776552 57888888887555556
Q ss_pred cccccCCCCCCEEcccCCc
Q 045877 547 PDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~ 565 (801)
|.. |++|+++.+.
T Consensus 111 P~s------Le~L~L~~n~ 123 (426)
T PRK15386 111 PES------VRSLEIKGSA 123 (426)
T ss_pred ccc------cceEEeCCCC
Confidence 643 5555555543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=7.6e-05 Score=87.63 Aligned_cols=135 Identities=24% Similarity=0.223 Sum_probs=66.8
Q ss_pred cCCceEeecCCCCCccC-chhhc-CCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 506 KELRLLSLQGMSGIQEL-PSEIS-YLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~l-p~~i~-~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.+|++|+++|.+....- |..++ .|+.|+.|.+++-.+.. .+-.-..++++|..||+|++.+... .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666664333221 22333 35666666666532221 1222334566666666666665422 45666666666
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC----hhhhhcccCCcEEEeeccCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN----LSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~----~~~l~~l~~L~~L~L~~n~l~ 650 (801)
|.+..+.-.. ......+.+|++|+.||+|.......... .+.-..++.|+.||.+++.+.
T Consensus 200 L~mrnLe~e~--------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFES--------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCc--------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6532222111 12234556667777777766554322200 122234566777776655443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00034 Score=75.92 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=57.0
Q ss_pred hccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccC
Q 045877 443 AMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQEL 522 (801)
Q Consensus 443 ~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~l 522 (801)
+..+.++..|.+.++.+..++ . --.+|+.|.+++|.-. ..+|+.+ ..+|++|++++|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--~--LP~sLtsL~Lsnc~nL-----------tsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--V--LPNELTEITIENCNNL-----------TTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--C--CCCCCcEEEccCCCCc-----------ccCCchh--hhhhhheEccCccccccc
Confidence 334578999999988888775 1 2236999999986431 2334444 258999999998767777
Q ss_pred chhhcCCCCCCEEeccCCCC--CCCCcccc
Q 045877 523 PSEISYLTSLEILDLRACYN--LDKLPDEI 550 (801)
Q Consensus 523 p~~i~~L~~L~~L~Ls~n~~--~~~lp~~~ 550 (801)
|. +|+.|+++++.. ++.+|.++
T Consensus 111 P~------sLe~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 111 PE------SVRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred cc------ccceEEeCCCCCcccccCcchH
Confidence 75 466677765432 45566543
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00035 Score=78.39 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=7.9
Q ss_pred CCChhHHHHHHHHh
Q 045877 119 QLDHDLIYMQYALK 132 (801)
Q Consensus 119 ~l~~~~lf~~~af~ 132 (801)
.+..+|+|++.+.+
T Consensus 652 k~en~dlfakL~~~ 665 (1102)
T KOG1924|consen 652 KLENDDLFAKLALK 665 (1102)
T ss_pred hccchHHHHHHHHH
Confidence 44455577765543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00026 Score=83.14 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=92.2
Q ss_pred hhccccccccccchhh-cchhh-hhhccccCceeeecCCcccCCCC-hhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 420 EKIKKLFNFSLSLEEI-ENKAK-DCAMKRGRIETLFNVSEEFPEFK-YDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l-~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
..-.+|++||+++.+. +.-.+ ..-.-++.|++|...+-.+..-. ...+.++++|+.||+|+++++
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~------------ 186 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS------------ 186 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc------------
Confidence 3456788899988653 33333 33346788888888775554322 345678899999999999884
Q ss_pred hhhHhhcCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCC--c----ccccCCCCCCEEcccCCcccc
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKL--P----DEIGKLKSLTHLDISECFLLD 568 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~l--p----~~~~~L~~L~~L~Ls~n~l~~ 568 (801)
. ..++++|++|+.|.+.+-.+.. ..-..+.+|++|++||+|........ . ..-..|++|+.||.|++.+..
T Consensus 187 n-l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 187 N-LSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred C-cHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 2 2678999999999998743322 11245788999999999975433221 1 112348899999999887654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=4.9e-05 Score=68.26 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=79.4
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 498 (801)
+.....|+..+|++|.|...++..-...+.++++.+.+|.|..++.. |..++.||.|+++.|.+ ...
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l------------~~~ 115 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPL------------NAE 115 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCcc------------ccc
Confidence 44566788899999999988887777777899999999999998776 99999999999999999 356
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
|..+..|.+|-+|+..+| -...+|..+
T Consensus 116 p~vi~~L~~l~~Lds~~n-a~~eid~dl 142 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLDSPEN-ARAEIDVDL 142 (177)
T ss_pred hHHHHHHHhHHHhcCCCC-ccccCcHHH
Confidence 888888999999999987 456666543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00033 Score=67.32 Aligned_cols=104 Identities=20% Similarity=0.168 Sum_probs=66.2
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
.+..+||++|++-.. ..|..+.+|.+|++.+|.|..+.+..-.-+++|.+|.|.+|.+... .-..-+.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l----------~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL----------GDLDPLA 110 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh----------hhcchhc
Confidence 556778888887543 3455677788888888888887777766777788888888876321 1123356
Q ss_pred CCcCCceEeecCCCCCccCc---hhhcCCCCCCEEeccC
Q 045877 504 NMKELRLLSLQGMSGIQELP---SEISYLTSLEILDLRA 539 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp---~~i~~L~~L~~L~Ls~ 539 (801)
.|++|++|.+-+|.....-- -.+..+++|++||...
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 67777777777763322111 1345566666666654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00052 Score=49.84 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=8.6
Q ss_pred hHhhcCCcCCceEeecCC
Q 045877 499 LKGLKNMKELRLLSLQGM 516 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n 516 (801)
|..+++|++|++|++++|
T Consensus 17 ~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 17 PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp GGHGTTCTTSSEEEETSS
T ss_pred CchHhCCCCCCEEEecCC
Confidence 333444555555555544
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00022 Score=51.81 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCC
Q 045877 688 SKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
++|++|+|++|.+..+|..+. +|++|+.|++++|+|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~--~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS--NLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT--TCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHh--CCCCCCEEEecCCCCCCCc
Confidence 479999999999999998776 9999999999999987654
|
... |
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00076 Score=75.81 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHhhhccC--CCcccccee
Q 045877 232 EFKKIFQSLG--NDQSCLLCF 250 (801)
Q Consensus 232 ~L~~SYd~L~--~~K~cFl~~ 250 (801)
++.=||. +| +.|.|.|.|
T Consensus 706 IflgS~r-mpyeeik~~ILev 725 (1102)
T KOG1924|consen 706 IFLGSFR-MPYEEIKNVILEV 725 (1102)
T ss_pred HHHhhcc-CCHHHHHHHHhhc
Confidence 3334555 66 666666664
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0012 Score=63.63 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l 566 (801)
+...+||++|. +..++. |..+..|.+|.|++|.+...-|.--.-+++|..|.|.+|.+
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 44555666552 223322 44455555666655544443333222344555555555543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00012 Score=77.58 Aligned_cols=90 Identities=21% Similarity=0.270 Sum_probs=49.2
Q ss_pred hhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-h-hhcCCCCCCEEeccCCCCC
Q 045877 466 WFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP-S-EISYLTSLEILDLRACYNL 543 (801)
Q Consensus 466 ~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~-~i~~L~~L~~L~Ls~n~~~ 543 (801)
+-.++++++.|++.++.... ...+...-..+.+|++|+|..|..++..- . -...+++|.+|++++|..+
T Consensus 159 ~~~~CpnIehL~l~gc~~iT---------d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKIT---------DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred HhhhCCchhhhhhhcceecc---------HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 34577777777777775311 12333334567777777777765544322 1 2245677777777777443
Q ss_pred CC--CcccccCCCCCCEEcccCC
Q 045877 544 DK--LPDEIGKLKSLTHLDISEC 564 (801)
Q Consensus 544 ~~--lp~~~~~L~~L~~L~Ls~n 564 (801)
.. +-.-+.++..|+.+.+.+|
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred hcCcchHHhccchhhhhhhhccc
Confidence 32 1112334445555555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0016 Score=65.46 Aligned_cols=111 Identities=21% Similarity=0.250 Sum_probs=63.3
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCC--CCCccCchhhcCCCCCCEEeccCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGM--SGIQELPSEISYLTSLEILDLRACYNLD 544 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~lp~~i~~L~~L~~L~Ls~n~~~~ 544 (801)
+..+..|+.|++.+..++. ...+-.|++|++|.++.| +..+.++.....+++|++|+|++|++.-
T Consensus 39 ~d~~~~le~ls~~n~gltt-------------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-------------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccccchhhhhhhccceee-------------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 3444555566666555532 123445677788888777 4555555555566778888887775431
Q ss_pred --CCcccccCCCCCCEEcccCCccccCCC---cccCCCCcccccccccccCC
Q 045877 545 --KLPDEIGKLKSLTHLDISECFLLDGIP---KKLSLLSKLQVLKGFVISDH 591 (801)
Q Consensus 545 --~lp~~~~~L~~L~~L~Ls~n~l~~~~p---~~~~~L~~L~~L~~~~l~~n 591 (801)
.+ ..+..+.+|..|++.+|..+.... ..|.-+++|.+|+...+..+
T Consensus 106 lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 106 LSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred cccc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 11 124556667777777776543111 12455666666665554443
|
|
| >KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0025 Score=67.55 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=26.4
Q ss_pred ccCCCCCCcchhhcccCCCCCCCcceeecCcchhhHhhh
Q 045877 71 SVTNNGNCWDYVIISNNKGKISSSEQIKKNEEKDASEAD 109 (801)
Q Consensus 71 ~~~~~~~~w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~ 109 (801)
+..+...+..++++.++.|.. ||++.+.|...|+
T Consensus 256 ~~~~~k~~~~AlFaqlNqGe~-----iTsgLkkVt~dmk 289 (480)
T KOG2675|consen 256 SSDANKGGRGALFAQLNQGEG-----ITSGLKKVTDDMK 289 (480)
T ss_pred CcccccccHHHHHHHHhccch-----hhhhhhhCChhhh
Confidence 334456667888888888754 8999999999888
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0019 Score=64.85 Aligned_cols=63 Identities=22% Similarity=0.165 Sum_probs=36.5
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCC--CCCCCCcccccCCCCCCEEcccCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRAC--YNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n--~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
-.+..|+.|++.++.+++. ..+-.|++|+.|.++.| ...+.++.-...+++|++|++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3445566666665433221 22344667777777777 444555555555677777777777654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0004 Score=73.60 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=37.0
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc--CchhhcCCCCCCEEeccCCC
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE--LPSEISYLTSLEILDLRACY 541 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~--lp~~i~~L~~L~~L~Ls~n~ 541 (801)
..|++|+.|+|..|.... ...+-.....+++|+||++++|.-+.. +-....++.+|+.+.+++|.
T Consensus 187 ~~C~~l~~l~L~~c~~iT---------~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSIT---------DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred HhcchhhhhhhcccchhH---------HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 456778888887753210 112222345677788888887754433 22234556667777777663
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.025 Score=51.82 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=14.7
Q ss_pred hhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 442 CAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 442 ~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
+|....+|+.+.+. +.+..+....|.+++.|+.+.+.++
T Consensus 7 ~F~~~~~l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 7 AFYNCSNLESITFP-NTIKKIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp TTTT-TT--EEEET-ST--EE-TTTTTT-TT-SEEEESST
T ss_pred HHhCCCCCCEEEEC-CCeeEeChhhccccccccccccccc
Confidence 34444444444443 2344444455555555555555543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.025 Score=51.75 Aligned_cols=121 Identities=9% Similarity=0.080 Sum_probs=67.3
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchh
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTD 497 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 497 (801)
.|...++|+.+.+.. .+..+...+|..+..++.+.+..+ +..+....|.+++.|+.+.+.++ +. .
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~------------~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LK------------S 71 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-------------E
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-cc------------c
Confidence 356666777888774 688888999999989999998764 88888899999989999999763 31 1
Q ss_pred h-hHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC
Q 045877 498 Y-LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL 556 (801)
Q Consensus 498 l-p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L 556 (801)
+ ...|..+.+|+.+.+..+ +...-...+.+. +|+.+.+..+ ....-...|.++++|
T Consensus 72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKL 128 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG-----
T ss_pred cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccC
Confidence 1 235677899999999764 332233556776 8888888753 333334455555554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.0024 Score=73.13 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=18.7
Q ss_pred cCCccCCeeEeecccccccccChhhhhcccCCcEEEe
Q 045877 608 EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644 (801)
Q Consensus 608 ~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L 644 (801)
..+++|++|+|+++.............++++|+.|.+
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 4456677777776654322111223444555555444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.0049 Score=62.17 Aligned_cols=36 Identities=33% Similarity=0.308 Sum_probs=16.4
Q ss_pred hhcCCcCCceEeecCCCCCccCch-----hhcCCCCCCEEe
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPS-----EISYLTSLEILD 536 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~-----~i~~L~~L~~L~ 536 (801)
.+.++++||.|.|..|...+.-+. .+.-|++|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 344555555555555444443331 233445555444
|
|
| >PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.011 Score=62.20 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCcchhhcccCCCCCCCcceeecCcchhhHhhh
Q 045877 76 GNCWDYVIISNNKGKISSSEQIKKNEEKDASEAD 109 (801)
Q Consensus 76 ~~~w~~l~~~~~~~~~~s~~~vttr~~~~~~~~~ 109 (801)
..+...+++.++.|.. ||.+.++|...|+
T Consensus 259 ~~~~~AlFaeLN~G~~-----iT~gLkKV~~~~~ 287 (312)
T PF01213_consen 259 SGGMSALFAELNQGED-----ITKGLKKVTKDMM 287 (312)
T ss_dssp ----------------------------------
T ss_pred cccHHHHHHHHhccCc-----cccCCcccCcchh
Confidence 4567778877777654 8999999988887
|
CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A. |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.0031 Score=63.55 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=53.3
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc--ccCCCCccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK--KLSLLSKLQ 581 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~--~~~~L~~L~ 581 (801)
.+.+.+.|++.||.+. .+ ....+++.|++|.|+-|.+... ..+..+++|+.|+|..|.|.. +.+ -+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhh
Confidence 3567788889887443 32 2345789999999999865543 236788889999998887542 211 245566666
Q ss_pred ccccccccCCc
Q 045877 582 VLKGFVISDHA 592 (801)
Q Consensus 582 ~L~~~~l~~n~ 592 (801)
.|. +..|.
T Consensus 92 ~LW---L~ENP 99 (388)
T KOG2123|consen 92 TLW---LDENP 99 (388)
T ss_pred hHh---hccCC
Confidence 665 55544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.035 Score=33.56 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=9.7
Q ss_pred CCEEcccCCccccCCCcccC
Q 045877 556 LTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 556 L~~L~Ls~n~l~~~~p~~~~ 575 (801)
|++||+++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555544 4554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.048 Score=32.93 Aligned_cols=9 Identities=44% Similarity=0.648 Sum_probs=4.2
Q ss_pred CceEeecCC
Q 045877 508 LRLLSLQGM 516 (801)
Q Consensus 508 L~~L~Ls~n 516 (801)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.11 Score=59.20 Aligned_cols=67 Identities=31% Similarity=0.261 Sum_probs=33.8
Q ss_pred hccCCCCCEEEcCCcc-cCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCc-c-CchhhcCCCCCCEEeccCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQ-E-LPSEISYLTSLEILDLRACYNL 543 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~-~-lp~~i~~L~~L~~L~Ls~n~~~ 543 (801)
...+++|+.|+|+++. ++. ..+......+++|++|.+.+|..++ . +-.....+++|++|+|++|...
T Consensus 239 ~~~~~~L~~l~l~~~~~isd----------~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTD----------IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhhcCCcCccchhhhhccCc----------hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3455666777777665 221 1222222236667777766654221 1 1122344666777777766543
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.0072 Score=59.45 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=59.8
Q ss_pred CChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCC
Q 045877 462 FKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACY 541 (801)
Q Consensus 462 ~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~ 541 (801)
++-..+..++..++||++.|++. .+-..|.-+..|..|+++.| -+..+|..++.+..+..+++..|
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~v------------n~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n- 98 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLV------------NLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN- 98 (326)
T ss_pred cchhhhhccceeeeehhhhhHHH------------hhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-
Confidence 33334455566677777777662 33344555666777777765 45667777777777777777665
Q ss_pred CCCCCcccccCCCCCCEEcccCCccc
Q 045877 542 NLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 542 ~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
.....|.++++++.++++++-+|.+.
T Consensus 99 ~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 99 NHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred chhhCCccccccCCcchhhhccCcch
Confidence 45566777777777777777777643
|
|
| >COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.3 Score=57.80 Aligned_cols=8 Identities=38% Similarity=0.459 Sum_probs=3.8
Q ss_pred EechhHHH
Q 045877 316 RMSPLVRS 323 (801)
Q Consensus 316 ~mHdlv~d 323 (801)
.||.+.|-
T Consensus 256 ~m~NL~Rl 263 (2365)
T COG5178 256 AMHNLLRL 263 (2365)
T ss_pred HHHHHHhc
Confidence 45555443
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.75 E-value=0.014 Score=65.87 Aligned_cols=44 Identities=25% Similarity=0.245 Sum_probs=24.5
Q ss_pred ccCC-ccCCeeEeecccccccc--cChhhhhcccCCcEEEeeccCCC
Q 045877 607 LEKL-EHLRKLTININSEKFQT--ENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 607 l~~L-~~L~~L~L~~n~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
+..+ ..++.++++.|.+.... .....+..+..++.|.++.|.+.
T Consensus 257 l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3444 45666666666665433 11344555566666666666554
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.016 Score=57.03 Aligned_cols=63 Identities=16% Similarity=0.018 Sum_probs=46.5
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
|+-++.|..||++.|.+ .-+|..++.+..++.+++..| .....|.+++.+++++++++..|.+
T Consensus 61 ~s~~t~~~rl~~sknq~------------~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQI------------KFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hHHHHHHHHHhccHhhH------------hhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhccCcc
Confidence 55566677778887776 355777777777888877765 5677788888888888888877654
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=87.59 E-value=0.34 Score=27.20 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=5.9
Q ss_pred CccEEEeeCCcCCC
Q 045877 714 NLKNLYIRGGRLNS 727 (801)
Q Consensus 714 ~L~~L~L~~n~l~~ 727 (801)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555543
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.45 E-value=0.18 Score=49.02 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=47.8
Q ss_pred CccEEEeeCCcCCCCCC---Ccccccceeccccccccccccc--cccCcCCCCceeeccCCCCCcccCCCCCcccccCCc
Q 045877 714 NLKNLYIRGGRLNSLEG---SEWETVKVLRLKYLNELKIDWK--GLQELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDL 788 (801)
Q Consensus 714 ~L~~L~L~~n~l~~~~~---~~f~~L~~l~L~~L~~L~l~~n--~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L 788 (801)
.++.++-+++.|...+- ..+++++.+.+.++.+++ .|. .+.+..|+|+.|+|++|+.++.--+. .+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d-D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD-DWCLERLGGLAPSLQDLDLSGCPRITDGGLA--CLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh-hHHHHHhcccccchheeeccCCCeechhHHH--HHHHhhhh
Confidence 45677777776555443 334555666777777776 332 34467788888899888887753331 33455555
Q ss_pred ceEeCC
Q 045877 789 INLNNS 794 (801)
Q Consensus 789 ~~LdlS 794 (801)
..|.+.
T Consensus 179 r~L~l~ 184 (221)
T KOG3864|consen 179 RRLHLY 184 (221)
T ss_pred HHHHhc
Confidence 555443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=83.66 E-value=0.73 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=14.6
Q ss_pred CCCccEEEeeCCcCCCCCCCcc
Q 045877 712 FKNLKNLYIRGGRLNSLEGSEW 733 (801)
Q Consensus 712 l~~L~~L~L~~n~l~~~~~~~f 733 (801)
+++|+.|+|++|.|+.++...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777777766544
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=83.66 E-value=0.73 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=14.6
Q ss_pred CCCccEEEeeCCcCCCCCCCcc
Q 045877 712 FKNLKNLYIRGGRLNSLEGSEW 733 (801)
Q Consensus 712 l~~L~~L~L~~n~l~~~~~~~f 733 (801)
+++|+.|+|++|.|+.++...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777777766544
|
|
| >KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.64 E-value=1.2 Score=48.09 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.4
Q ss_pred cceeeeee
Q 045877 352 TFKRACLV 359 (801)
Q Consensus 352 ~~r~l~~~ 359 (801)
.|++.+++
T Consensus 379 ~Ckk~svV 386 (480)
T KOG2675|consen 379 NCKKTSVV 386 (480)
T ss_pred CCceeeEE
Confidence 34444444
|
|
| >PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.69 E-value=1.9 Score=44.19 Aligned_cols=6 Identities=17% Similarity=-0.008 Sum_probs=2.7
Q ss_pred hhHhhh
Q 045877 104 DASEAD 109 (801)
Q Consensus 104 ~~~~~~ 109 (801)
+..+++
T Consensus 237 ~PnMld 242 (253)
T PF05308_consen 237 VPNMLD 242 (253)
T ss_pred CccHHH
Confidence 444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 5e-18
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHL 559
+ ++ +L L L+G + ++ P L+ L L+ C NL LP +I +L L L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 560 DISECFLLDGIPKKLSLLSKLQVL 583
D+ C L +P ++ L ++
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCII 306
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563
L+ L L+ S + LP +I LT LE LDLR C NL +LP I +L + + +
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310
Query: 564 CFL 566
Sbjct: 311 HLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGK--------- 552
++ L L+L + ++ LP+ I+ L L L +RAC L +LP+ +
Sbjct: 123 MQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 553 LKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584
L +L L + + +P ++ L L+ LK
Sbjct: 182 LVNLQSLRLEWT-GIRSLPASIANLQNLKSLK 212
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 22/146 (15%), Positives = 36/146 (24%), Gaps = 40/146 (27%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDL-------------------RACYN 542
+ L QG + ++ +S D R
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67
Query: 543 LDKLPDEIGKLKS--LTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKR 600
L D + L++ L P + LS LQ + I
Sbjct: 68 LKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMT---IDA---------- 113
Query: 601 WCSLKDL----EKLEHLRKLTININS 622
L +L ++ L LT+ N
Sbjct: 114 -AGLMELPDTMQQFAGLETLTLARNP 138
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584
+ + E L + L D + + + + D + + +++
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-NSNNP-QIETRT 64
Query: 585 GFVISDHAEDDRRWK---------RWCSLKDL----EKLEHLRKLTININS 622
G + A+ R L +L HL+ +TI+
Sbjct: 65 GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG 115
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 2e-16
Identities = 101/646 (15%), Positives = 200/646 (30%), Gaps = 195/646 (30%)
Query: 115 HPLNQLDHDLIYMQYALKR-LKGFEGTFGKSI--QDLKDDLELVLTSQAT----GSKSVQ 167
H + +D + QY K L FE F + +D++D + +L+ + SK
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 168 E-----VETLQDEIRRISQKFLN---------LKSKIPPVNSSSSDDSDA--QQRRRI-N 210
TL + + QKF+ L S I S + +QR R+ N
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 211 QSKDLPNMADKTRFKEHDFFIEFKKIFQSL------------GNDQSCL----------- 247
++ + +R + + + ++ L G+ ++ +
Sbjct: 122 DNQVFAKY-NVSRLQPYL---KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 248 --LCFAVF--------PENAVIKKRLLVNWWIGEGFLKERIQGEN---SAEKAADKLLRE 294
+ F +F V++ + + I + N +L R
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 295 FEEKGF-----ILPVDKKHRGVANSF----RMSPLV--R-SAVITLAKENNFFHFDSEGI 342
+ K + +L + ++ N+F ++ L+ R V H +
Sbjct: 238 LKSKPYENCLLVLL-NVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 343 PTMNFQKYETFKRACLVYDHKEGSVPLRLEQS---AIKLAAMELLEEKRLGEDNQKAVQF 399
M E D + +P + + + + A E + + DN K V
Sbjct: 295 S-MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNC 352
Query: 400 AESMALFNFGEKPEQKAVEFEKIKKLFNFSL-SLEEIENKA--KDCAMKRGRIETLFNVS 456
+K+ + SL LE E + ++
Sbjct: 353 --------------------DKLTTIIESSLNVLEPAEYRKMFDRLSV------------ 380
Query: 457 EEFPEFKYDWFSKLEKI--KVLYLGRWQSTVDDIPHIEIESTDYLKGL--KNMKE--LRL 510
FP I +L L W + + + + + L K KE + +
Sbjct: 381 --FPP---S-----AHIPTILLSL-IWFDVIKSDV-MVVVNKLHKYSLVEKQPKESTISI 428
Query: 511 LSLQGMSGIQELPSEISYLTSL--EILD---LRACYNLDKLPDE---------IGK-LKS 555
S+ EL ++ +L I+D + ++ D L IG LK+
Sbjct: 429 PSIY-----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 556 LTHLDISECF---LLDG--IPKKL-----------SLLSKLQVL---KGFVISDHAEDDR 596
+ H + F LD + +K+ S+L+ LQ L K ++ + + +R
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 597 RWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQL 642
+ + L K+ N+ K + LL++
Sbjct: 544 L------VNAILDF--LPKIEENLICSK-----------YTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 1e-14
Identities = 98/635 (15%), Positives = 183/635 (28%), Gaps = 214/635 (33%)
Query: 213 KDLPNMADKTRFKEHDFFIEFKKIFQSLGNDQSCLLCFAVF---PENAV---IKKRLLVN 266
KD+ +M KE E I S L F E V +++ L +N
Sbjct: 36 KDVQDMPKSILSKE-----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 267 WWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVA-----NSFRMSPL- 320
+ FL I+ E + +I D+ + N R+ P
Sbjct: 91 Y----KFLMSPIKTEQRQ--------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 321 -VRSAVITLAKENN-FFHFDSEGIPTMN-FQKYETFKRACLVYDHKEGSVPLRLEQSAIK 377
+R A++ L N G + K +
Sbjct: 139 KLRQALLELRPAKNVLID----G---VLGSGK----------------TW---------- 165
Query: 378 LAAMELLEEKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKIKKLF----------- 426
+A L K + + N + V E ++KL
Sbjct: 166 VALDVCLSYKVQ-------CKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRS 217
Query: 427 ----NFSLSLEEIENKAKDCAMKRGRIETLF---NV--SEEFPEFKYDWFSKLEKIKVLY 477
N L + I+ + + + L NV ++ + F K+L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-------SCKILL 270
Query: 478 LGRWQSTVDDIP-----HIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSL 532
R++ D + HI ++ + L + LL
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLK------------------- 309
Query: 533 EILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592
LD R LP E+ L P++LS++++ I D
Sbjct: 310 -YLDCRP----QDLPREV----------------LTTNPRRLSIIAES-------IRDGL 341
Query: 593 EDDRRWKRWCSLKDLEKLEHLRKLTIN-INSEKFQTENLSTVLAFKRL--LQ-------- 641
W W + + +KL + + ++N + +++ F RL
Sbjct: 342 A---TWDNWKHV-NCDKLTTIIESSLNVLEPAEYRK-------MFDRLSVFPPSAHIPTI 390
Query: 642 -LKVSWGGGS-----------ANKS---TKPEPQTGRKDNFFIKTLTKFRTRVTERSQHV 686
L + W S +P+ T + +++ K V
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 687 ES--KLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYL 744
+ + D D+ +P ++ Y + +I G L ++E E + + R+ +L
Sbjct: 451 DHYNIPKTFD----SDDLIPPYLDQYFYS-----HI-GHHLKNIEHP--ERMTLFRMVFL 498
Query: 745 N----ELKI-----DWKGLQELFPKLEYLEKFKCH 770
+ E KI W + L+ L+ +K +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 1e-13
Identities = 81/554 (14%), Positives = 155/554 (27%), Gaps = 196/554 (35%)
Query: 336 HFDSEGIPTMNFQKY----------ETFKRACLVYDHKEGSVPLRLEQSAIKLAAM-ELL 384
H D E +Y + F D ++ + +S + + ++
Sbjct: 6 HMDFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQD------MPKSILSKEEIDHII 55
Query: 385 EEKRLGEDNQKAVQFAESMALFN-FGEKPEQKAVEF--EKIKKLFNFSLSLEEIENKAKD 441
K D LF K E+ +F E ++ N+ + I+ + +
Sbjct: 56 MSK----DAVSGTLR-----LFWTLLSKQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQ 104
Query: 442 CAMKRGRIET----LFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTD 497
+M L+N ++ F KY+ S+L+ L R
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFA--KYN-VSRLQPYLKL---R----------------- 141
Query: 498 YLKGLKNMKELRLLSLQGMSGI----------------QELPSEISYLTS---------L 532
+ L ++ + + + G+ G ++ +I +L L
Sbjct: 142 --QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 533 EILDLRACYNLDK----LPDEIGKLKSLTHLDISECF--LLDGIPKKLSLLSKLQVLKGF 586
E+L + Y +D D +K H I LL P + LL VL
Sbjct: 200 EML-QKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLL----VL--- 250
Query: 587 VISDHAEDDRRWK------------RWCSLKDLEKLEHLRKLTININSEKFQTENLSTVL 634
+ ++ + W R+ + D ++++ +S + + ++L
Sbjct: 251 ---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 635 AFKRLLQLKVSWGGGSANKSTKPE------PQT----GRKDNFFIKTLTKFRTRVTERSQ 684
+ P P+ + T ++ ++
Sbjct: 308 L---------KYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 685 HV-ESKLEKL----------DFQCFP-DEKLPS------WV--------------HPYS- 711
+ ES L L FP +P+ W H YS
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 712 -FKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKL--EY--LEK 766
K K I + S+ YL ELK+ + L + Y +
Sbjct: 417 VEKQPKESTI---SIPSI--------------YL-ELKVKLENEYALHRSIVDHYNIPKT 458
Query: 767 FKCHKVTLCPCDGY 780
F + D Y
Sbjct: 459 FDSDDLIPPYLDQY 472
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 64/424 (15%), Positives = 130/424 (30%), Gaps = 96/424 (22%)
Query: 67 TTEESVTNNGNCWDYVIISNNKGKISSSEQIK--KNEEKDASEADQSVQVHP--LNQLDH 122
+ E+V Y I N + S IK + + + + L L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL- 251
Query: 123 DLIYMQYALKRLKGFEG-------TFGKSIQDLKDDLELVLTSQATGSKSVQEVET--LQ 173
++ K F T K + D L++ T S+
Sbjct: 252 NV----QNAKAWNAFNLSCKILLTTRFKQVTD-------FLSAATTTHISLDHHSMTLTP 300
Query: 174 DEIRRISQKFLNLK-SKIPPVNSSSSDDSDAQQRRRIN---------QSKDLPNMADKTR 223
DE++ + K+L+ + +P + N +D D
Sbjct: 301 DEVKSLLLKYLDCRPQDLPR------------EVLTTNPRRLSIIAESIRDGLATWD--N 346
Query: 224 FKEHDFFIEFKKIFQ-SLGN-----DQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKER 277
+K H + I + SL + +VFP +A I LL W +
Sbjct: 347 WK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD----VIK 401
Query: 278 IQGENSAEKAADKLL--REFEEKGFILP---VDKK---------HRGVANSFRMSPLVRS 323
K L ++ +E +P ++ K HR + + + + S
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 324 AVITLAKENNFF------HFDSEGIPTMNFQKYETFKRACLVYDHKEGSVPLRLEQSAIK 377
+ + +F H + + ++ F+ L + E +R + +A
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIE----HPERMTLFRMVFLDFRFLEQK--IRHDSTAWN 515
Query: 378 LAA--MELLE-----EKRLGEDNQKAVQFAESMALFNFGEKPEQKAVEFEKIKKLFNFSL 430
+ + L+ + + +++ K + A+ +F K E+ + K L +L
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILDFLPKIEENLIC-SKYTDLLRIAL 572
Query: 431 SLEE 434
E+
Sbjct: 573 MAED 576
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 58/213 (27%)
Query: 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKE 507
+I L N + +L K++++Y + +
Sbjct: 429 QIGNLTNRITFISKA----IQRLTKLQIIYF----------------ANSPFTYDNIAVD 468
Query: 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDIS----- 562
+ + S L L ++L C N+ +LPD + L L L+I+
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528
Query: 563 ----ECFLLDGIPKKLSLLSKLQVL-------KGFVISDHAEDDRRWKRWCSLKDLEKLE 611
+ K+Q+ + F S L+K+
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA---------------SLQKMV 573
Query: 612 HLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644
L L N + + AF ++L
Sbjct: 574 KLGLLDCVHN-------KVRHLEAFGTNVKLTD 599
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 18/133 (13%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 454 NVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSL 513
+ P D+ L +++ L + + ++ + T ++++ +
Sbjct: 502 PNMTQLP----DFLYDLPELQSLNIACNRGI--SAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 514 QGMSGIQELPSE--ISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIP 571
+ ++E P+ + + L +LD +N + + G LT L + ++ IP
Sbjct: 556 GYNN-LEEFPASASLQKMVKLGLLDCV--HNKVRHLEAFGTNVKLTDLKLDYN-QIEEIP 611
Query: 572 KKL-SLLSKLQVL 583
+ + +++ L
Sbjct: 612 EDFCAFTDQVEGL 624
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 18/90 (20%)
Query: 504 NMKELRLLSLQGMSG--IQELPSEISYLTSLEILDLRACYNLD--------KLPDEIGKL 553
+ L + + S P++ + L+ +R + D + P I
Sbjct: 751 TLPYLSNMDV---SYNCFSSFPTQPLNSSQLKAFGIR--HQRDAEGNRILRQWPTGITTC 805
Query: 554 KSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
SL L I + + + L +L +L
Sbjct: 806 PSLIQLQIGSN-DIRKVDE--KLTPQLYIL 832
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 26/198 (13%), Positives = 51/198 (25%), Gaps = 41/198 (20%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIEST-----------------DYLKGLKNMKELR 509
+L ++KVL G TV + E T +L + +
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402
Query: 510 LLSLQGMSGIQELPSEISYLTSLEILDLRACYN-LDKLPDEIGKLKSLTHLDISECFLLD 568
LL + P + SL+ + N + + I +L L + +
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462
Query: 569 GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTE 628
+ K + + + L+ L + +
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELS--------------WSNLKDLTDVELYNC------- 501
Query: 629 NLSTVL--AFKRLLQLKV 644
T L L +L+
Sbjct: 502 PNMTQLPDFLYDLPELQS 519
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 21/137 (15%)
Query: 457 EEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLS--LQ 514
EE PE D+ + ++++ L + I + K + M + +
Sbjct: 608 EEIPE---DFCAFTDQVEGLGFSHNKLK-------YIPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 515 GMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDISECFL------- 566
+ + + L + K P E+ ++ + +S +
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENS 716
Query: 567 LDGIPKKLSLLSKLQVL 583
L L +
Sbjct: 717 LKPKDGNYKNTYLLTTI 733
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG--KLKSLTHL 559
L N + LSL G +P I LT L++L ++ G +L
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFG-THSETVSGRLFGDEELTPDMSE 377
Query: 560 DISECFLLDGIPKKLSLLSKLQVL 583
+ + L +L +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLS 401
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 7e-11
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 504 NMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDI 561
N+ L L + G++ + +P I+ LT L L + N+ +PD + ++K+L LD
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDF 132
Query: 562 SECFLLDGIPKKLSLLSKLQVL 583
S L +P +S L L +
Sbjct: 133 SYNALSGTLPPSISSLPNLVGI 154
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 9e-11
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 504 NMKELRLLSLQGM--SGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLD 560
+ L L G+ +PS ++ L L L + NL +P I KL L +L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 561 ISECFLLDGIPKKLSLLSKLQVL 583
I+ + IP LS + L L
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTL 130
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQG--MSGIQELPS 524
+ L + LY+G + V IP + + +L L + +SG +P
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPP----------AIAKLTQLHYLYITHTNVSG--AIPD 119
Query: 525 EISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582
+S + +L LD L LP I L +L + + IP SKL
Sbjct: 120 FLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 508 LRLLSLQG--MSGIQELPSEISYLTSLEILDLRACYNL--DKLPDEIGKLKSLTHLDISE 563
L + L + G + + + + L N L ++G K+L LD+
Sbjct: 199 LAFVDLSRNMLEG--DASVLFGSDKNTQKIHLA--KNSLAFDLG-KVGLSKNLNGLDLRN 253
Query: 564 CFLLDGIPKKLSLLSKLQVL 583
+ +P+ L+ L L L
Sbjct: 254 NRIYGTLPQGLTQLKFLHSL 273
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 29/106 (27%)
Query: 504 NMKELRLLSLQG--MSGIQELPSEISYLTSL-EILDLRACY------------NLDKL-- 546
++ L ++ G +SG +P + L + + NL +
Sbjct: 147 SLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 547 ---------PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
G K+ + +++ L + K+ L L L
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL 249
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 40/178 (22%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIE--------------IESTDYLKGLKNMKELRLLS 512
+++ + + L V D+ IE + + + L L
Sbjct: 40 EAQMNSLTYITLA--NINVTDLTGIEYAHNIKDLTINNIHATN---YNPISGLSNLERLR 94
Query: 513 LQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK 572
+ G + +S LTSL +LD+ + D + +I L + +D+S +
Sbjct: 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI----T 150
Query: 573 KLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTI------NINSEK 624
+ L L LK I + D +E KL I +K
Sbjct: 151 DIMPLKTLPELKSLNIQF-----------DGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 502 LKNMKELRLLSLQG--MSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTH 558
L ++ +LR L L + G E+P E+ Y+ +LE L L +L ++P + +L
Sbjct: 438 LGSLSKLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNW 494
Query: 559 LDISECFLLDGIPKKLSLLSKLQVL 583
+ +S L IPK + L L +L
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAIL 519
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-10
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 502 LKNMKELRLLSLQG--MSGIQELPSEISYLTSLEILDLRACYNL--DKLPDEIGKLKSLT 557
L +K L L L ++G E+PS +S T+L + L N ++P IG+L++L
Sbjct: 462 LMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLS--NNRLTGEIPKWIGRLENLA 517
Query: 558 HLDISECFLLDGIPKKLSLLSKLQVL 583
L +S IP +L L L
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWL 543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 499 LKGLKNMKELRLLSLQG--MSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL 556
EL+ L++ G +SG ++ +S +LE LD+ + +P +G +L
Sbjct: 171 WVLSDGCGELKHLAISGNKISG--DVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSAL 225
Query: 557 THLDISECFLLDGIPKKLSLLSKLQVL 583
HLDIS L + +S ++L++L
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLL 252
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDIS 562
L L + + +P + ++L+ LD+ L I L L+IS
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNIS 255
Query: 563 ECFLLDGIPKKLSLLSKLQVL 583
+ IP L LQ L
Sbjct: 256 SNQFVGPIPP--LPLKSLQYL 274
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 27/105 (25%)
Query: 504 NMKELRLLSLQG--MSGIQELPSEISYLTSLEILDLRA-----------CYNLDKL---- 546
+ L+ L + G +SG + IS T L++L++ + +L L
Sbjct: 221 DCSALQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278
Query: 547 -------PDEI-GKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
PD + G +LT LD+S +P S L+ L
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 504 NMKELRLLSLQG--MSGIQELPSEISY-LTSLEILDLRACYNLD-KLPDEIGKLKSLTHL 559
+K L+ LSL +G E+P +S +L LDL + +P G L L
Sbjct: 267 PLKSLQYLSLAENKFTG--EIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESL 323
Query: 560 DISECFLLDGIPKK-LSLLSKLQVL 583
+S +P L + L+VL
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVL 348
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 504 NMKELRLLSLQG--MSGIQELPSEISYLTSLEILDLRACYNL-DKLPDE-IGKLKSLTHL 559
L L L G G +P + LE L L + N +LP + + K++ L L
Sbjct: 292 ACDTLTGLDLSGNHFYG--AVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVL 348
Query: 560 DISECFLLDGIPKKLS-LLSKLQVL 583
D+S +P+ L+ L + L L
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTL 373
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567
L L + S + LT LE L L + + SLT LD+S L
Sbjct: 57 LSSKPLNVGFS--AVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLS 113
Query: 568 DGIPKKLSL--LSKLQVL 583
+ SL S L+ L
Sbjct: 114 GPVTTLTSLGSCSGLKFL 131
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLD 560
L + ++ S+ LD+ + L +P EIG + L L+
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM-SYNMLSGYIPKEIGSMPYLFILN 662
Query: 561 ISECFLLDGIPKKLSLLSKLQVL 583
+ + IP ++ L L +L
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNIL 685
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 22/126 (17%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK-ELRLLSLQG--MSGIQE 521
D K+ +KVL L ++P + L N+ L L L SG
Sbjct: 337 DTLLKMRGLKVLDLSF-NEFSGELP----------ESLTNLSASLLTLDLSSNNFSG--P 383
Query: 522 LPSEI--SYLTSLEILDLRACYNL--DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577
+ + + +L+ L L+ N K+P + L L +S +L IP L L
Sbjct: 384 ILPNLCQNPKNTLQELYLQ--NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 578 SKLQVL 583
SKL+ L
Sbjct: 442 SKLRDL 447
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 501 GLKNMKELRLLSLQGMSGIQELPS--EISYLTSLEILDLRACYNLDKLPDEIG-KLKSLT 557
G K L L L S + + + + L+ L++ + G KL SL
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 558 HLDISECFLLDGIPKKLSLLSKLQVLKGFVISD 590
LD+S + L LK IS
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 504 NMKELRLLSLQG--MSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLD 560
+M L +L+L +SG +P E+ L L ILDL + LD ++P + L LT +D
Sbjct: 654 SMPYLFILNLGHNDISG--SIPDEVGDLRGLNILDL-SSNKLDGRIPQAMSALTMLTEID 710
Query: 561 IS 562
+S
Sbjct: 711 LS 712
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 41/150 (27%)
Query: 458 EFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQG-- 515
E P+ W +LE + +L L S +IP L + + L L L
Sbjct: 505 EIPK----WIGRLENLAILKL-SNNSFSGNIPA----------ELGDCRSLIWLDLNTNL 549
Query: 516 MSGIQELPSEISYLTSLEIL---------DLRACYNLDKL-------------PDEIGKL 553
+G +P+ + + ++ + +++ +L
Sbjct: 550 FNG--TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 554 KSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+ +I+ + L
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTH 558
+ + + + + L L +++ C NL KLP + L +
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277
Query: 559 LDISECFLLDG--------IPKKLSLLSKLQVL 583
++++ + G + K+Q++
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQII 310
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 12/134 (8%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 454 NVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSL 513
+ P + L +++++ + + + + ++ L ++++++ +
Sbjct: 260 PNLTKLPT----FLKALPEMQLINVACNRGISGEQLKDDWQA---LADAPVGEKIQIIYI 312
Query: 514 QG---MSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGI 570
+ + + + + L +L+ L+ G L L+++ + I
Sbjct: 313 GYNNLKTF--PVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYN-QITEI 368
Query: 571 PKKL-SLLSKLQVL 583
P +++ L
Sbjct: 369 PANFCGFTEQVENL 382
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 501 GLKNMKELRLLSLQGMSG--IQELPSEISYLTSLEILDLRACYNLD------KLPDEIGK 552
+ L + L S + P++ ++L+ +R + + P+ I
Sbjct: 508 RATTLPYLVGIDL---SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564
Query: 553 LKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
SLT L I + + + + + VL
Sbjct: 565 CPSLTQLQIGSN-DIRKVNE--KITPNISVL 592
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 20/193 (10%), Positives = 50/193 (25%), Gaps = 39/193 (20%)
Query: 445 KRGRIETL----FNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHI--EIESTDY 498
GR+ L F S P+ +L +++VL LG V++ I +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDA----IGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 499 LK-----------------GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACY 541
+ ++ +L + + + +
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ-LSN 193
Query: 542 NLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRW 601
N+ + + +L L + + + + + + D
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL---------- 243
Query: 602 CSLKDLEKLEHLR 614
+L+ L +
Sbjct: 244 -KWDNLKDLTDVE 255
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
EKI+++Y+G + +E++ L+ MK+L +L + ++
Sbjct: 301 APVGEKIQIIYIGYNN-----LKTFPVETS-----LQKMKKLGMLECLY-NQLEGKLPAF 349
Query: 527 SYLTSLEILDLRACYN-LDKLPDEI-GKLKSLTHLDISECFLLDGIPKKLSL--LSKLQV 582
L L+L YN + ++P G + + +L + L IP +S +
Sbjct: 350 GSEIKLASLNLA--YNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSA 406
Query: 583 L 583
+
Sbjct: 407 I 407
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 502 LKNMKELRLLSLQGMSGIQ---ELPSEISYLTSLEILDLRACYN-LDKLPDEIGKLKSLT 557
+K + + + G + E P I+ SL L + N + K+ ++I +++
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG--SNDIRKVNEKI--TPNIS 590
Query: 558 HLDISECFLLDGIPKKLSLLSKLQVL 583
LDI + + + + +
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMY 616
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 13/104 (12%)
Query: 492 EIESTDYLKGLKNMKELRL----LSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547
I + K + M + + L ++ ++L + K P
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFP 449
Query: 548 DEI-GKLKSLTHLDISECFL-------LDGIPKKLSLLSKLQVL 583
E+ L+ +++ L L + L +
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 502 LKNMKELRLLSLQGMSGIQELPS--EISYLTSLEILDLR-------ACYNLDKLPDEIGK 552
+++ LS ++ +P+ + ++ + +D N D L K
Sbjct: 373 CGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 553 LKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+++ +++S + + S S L +
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSI 462
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 4/87 (4%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLR----ACYNLDKLPDEIGKLKSLT 557
L + + LSL+G +P I LT LE+L L P I S
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 558 HLDISECFLLDGIPKKLSLLSKLQVLK 584
++K
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIK 163
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 50/317 (15%), Positives = 92/317 (29%), Gaps = 85/317 (26%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRL--LSLQGMSGIQELP- 523
+ L + LG + T L + L+ L ++ + G++ L
Sbjct: 20 DTALAEKMKTVLG----------KTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN 69
Query: 524 --------------SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDG 569
+ + LT L + + N + L +LT L + + D
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMN--NNQIADITPLANLTNLTGLTLFNNQITDI 127
Query: 570 IPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLT-ININSEKFQTE 628
P L L+ L L+ +S ++ D+ L L L ++ +
Sbjct: 128 DP--LKNLTNLNRLE---LSS-----------NTISDISALSGLTSLQQLSFGN------ 165
Query: 629 NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVES 688
++ + L L+ NK + + LT
Sbjct: 166 QVTDLKPLANLTTLERLDISS--NKVSDISV---------LAKLT--------------- 199
Query: 689 KLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEG-SEWETVKVLRLKYLNEL 747
LE L + NL L + G +L + + + L L N++
Sbjct: 200 NLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN-NQI 255
Query: 748 KIDWKGLQELFPKLEYL 764
+ L L KL L
Sbjct: 256 S-NLAPLSGL-TKLTEL 270
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 47/300 (15%), Positives = 93/300 (31%), Gaps = 73/300 (24%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
S L ++ L G + LK L N+ L L + + + ++ +
Sbjct: 152 LSGLTSLQQLSFGNQVTD--------------LKPLANLTTLERLDISS-NKVSDISV-L 195
Query: 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGF 586
+ LT+LE L + + +G L +L L ++ L K + L+ L L
Sbjct: 196 AKLTNLESLIATNN-QISDIT-PLGILTNLDELSLNGNQL-----KDIGTLASLTNLTDL 248
Query: 587 VISDHAEDDRRWKRWCSLKDLEKLEHLRKLT-ININSEKFQTENLSTVLAFKRLLQLKVS 645
+++ + +L L L KLT + + + + +S + L L
Sbjct: 249 DLAN-----------NQISNLAPLSGLTKLTELKLGANQ-----ISNISPLAGLTALTNL 292
Query: 646 WGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPS 705
N+ P I L L L +
Sbjct: 293 ELNE--NQLEDISP---------ISNLK---------------NLTYLTLYFNNISDISP 326
Query: 706 WVHPYSFKNLKNLYIRGGRLNSLEG-SEWETVKVLRLKYLNELKIDWKGLQELFPKLEYL 764
L+ L+ +++ + + + L + N++ D L L ++ L
Sbjct: 327 VSS---LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH-NQIS-DLTPLANL-TRITQL 380
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 35/149 (23%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIE--------------IESTDYLKGLKNMKELRL-- 510
S L K+ L LG Q + +I + +E + LKN+ L L
Sbjct: 261 LSGLTKLTELKLGANQ--ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 318
Query: 511 ------LSLQGMSGIQEL---------PSEISYLTSLEILDLRACYNLDKLPDEIGKLKS 555
+ ++ +Q L S ++ LT++ L +N + L
Sbjct: 319 NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAG--HNQISDLTPLANLTR 376
Query: 556 LTHLDISECFLLDGIPKKLSLLSKLQVLK 584
+T L +++ + + +S +K
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVK 405
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 42/272 (15%), Positives = 85/272 (31%), Gaps = 66/272 (24%)
Query: 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTH 558
+ + E L + + + S + L + L K D + L +LT
Sbjct: 17 IFTDTALAEKMKTVLGKTN-VTDTVS-QTDLDQVTTLQAD--RLGIKSIDGVEYLNNLTQ 72
Query: 559 LDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTI 618
++ S L D P L L+KL + +++ + D+ L +L LT
Sbjct: 73 INFSNNQLTDITP--LKNLTKLVDIL---MNN-----------NQIADITPLANLTNLTG 116
Query: 619 NINSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTR 678
+ Q ++ + L +L++S N + + LT
Sbjct: 117 -LTLFNNQITDIDPLKNLTNLNRLELSS-----NTISDISA---------LSGLT----- 156
Query: 679 VTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKV 738
L++L F + P + L+ L I +++ + +
Sbjct: 157 ----------SLQQLSFGNQVTDLKPLA----NLTTLERLDISSNKVSDISV-------L 195
Query: 739 LRLKYLNELKIDWKGLQEL-----FPKLEYLE 765
+L L L + ++ L+ L
Sbjct: 196 AKLTNLESLIATNNQISDITPLGILTNLDELS 227
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 57/310 (18%), Positives = 103/310 (33%), Gaps = 58/310 (18%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
F +++VL L R + I IE + +++ L L L G
Sbjct: 48 FFSFPELQVLDLSRCE-----IQTIEDGA------YQSLSHLSTLILTGNPIQSLALGAF 96
Query: 527 SYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDG-IPKKLSLLSKLQVL- 583
S L+SL+ L NL L IG LK+L L+++ + +P+ S L+ L+ L
Sbjct: 97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 584 -KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININ-SEKFQTENLSTVLAFKRLLQ 641
I DL L + L ++++ S RL +
Sbjct: 156 LSSNKIQSIYCT-----------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204
Query: 642 LKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE 701
L + +NF + K T ++ +L F +E
Sbjct: 205 LTLR-------------------NNFDSLNVMK-----TCIQGLAGLEVHRLVLGEFRNE 240
Query: 702 KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLR-LKYLNELKIDWKGLQELFP- 759
+ + L NL I RL L+ + + + L ++ + ++ +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 760 ----KLEYLE 765
++LE
Sbjct: 301 SYNFGWQHLE 310
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQG--MSGIQELPS 524
F LE+++ L ++ +++ L L +
Sbjct: 392 FLGLEQLEHLDFQHSN----------LKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNG 439
Query: 525 EISYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+ L+SLE+L + + PD +L++LT LD+S+C L P + LS LQVL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
F L + L + H + GL +++ L++ LP
Sbjct: 417 FLSLRNLIYLDISH--------THTRVAFNGIFNGLSSLEVLKMAGNSFQENF--LPDIF 466
Query: 527 SYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+ L +L LDL C L++L P L SL L++S L+ LQVL
Sbjct: 467 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 23/121 (19%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE--IGKLKSLTHL 559
L+ L L +G+ + S L LE LD + NL ++ + L++L +L
Sbjct: 369 DFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYL 426
Query: 560 DISECFLLDGIPKKLSLLSKLQVL-------KGFVISDHAEDDRRWKRWCSLKDLEKLEH 612
DIS + LS L+VL + + +L L
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL------------PDIFTELRNLTF 474
Query: 613 L 613
L
Sbjct: 475 L 475
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 46/297 (15%), Positives = 82/297 (27%), Gaps = 77/297 (25%)
Query: 499 LKGLKNMKELRLLSLQG--MSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL 556
++ L L L +S TSL+ LDL + + L+ L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQL 398
Query: 557 THLDISECFLLDGIPKK-LSLLSKLQVLKGFVISD---HAEDDRRWKRWCSLKDLEKLEH 612
HLD L L L L IS + L LE
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLD---ISHTHTRVAFNG------IFNGLSSLEV 449
Query: 613 LR----KLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFF 668
L+ N + F L L L +S
Sbjct: 450 LKMAGNSFQENFLPDIFT--ELR------NLTFLDLS-------------------QCQL 482
Query: 669 IKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNL---YIRGGRL 725
+++ + + S L+ L+ + + +K L +L
Sbjct: 483 --------EQLSPTAFNSLSSLQVLNMS---HNNF-FSLDTFPYKCLNSLQVLDYSL--- 527
Query: 726 NSLEGSEWETVKVLR--LKYLN----------ELKIDWKGLQELFPKLEYLEKFKCH 770
N + S+ + ++ L +LN E + + +++ L +E+ +C
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 518 GIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577
++P + S + LDL L LD+S C + L
Sbjct: 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 578 SKLQVL 583
S L L
Sbjct: 76 SHLSTL 81
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQEL-P 523
F+ L ++VL + + ++ L L L +++L P
Sbjct: 439 GIFNGLSSLEVLKMA----------GNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSP 487
Query: 524 SEISYLTSLEILDLRACYNL--DKLPDEIGKLKSLTHLDISECFLLDGIPKKL-SLLSKL 580
+ + L+SL++L++ +N L SL LD S ++ ++L S L
Sbjct: 488 TAFNSLSSLQVLNMS--HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 581 QVL 583
L
Sbjct: 546 AFL 548
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 53/312 (16%), Positives = 92/312 (29%), Gaps = 40/312 (12%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQG--MSGIQEL 522
L+ +K L + H I+S + N+ L L L + I
Sbjct: 118 FPIGHLKTLKELNVA----------HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-- 165
Query: 523 PSEISYLTSLEI----LDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSL-L 577
+++ L + + LDL ++ + K L L + F + K L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS-EKFQTENLSTVLAF 636
+ L+V + R + D LE L LTI + F
Sbjct: 225 AGLEVH------RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 637 KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQ 696
L + + + + + NF + L + + L++L F
Sbjct: 279 NCLTNVSSFS--LVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333
Query: 697 CFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYL----NELKIDWK 752
S V +L+ L + L+ LKYL N +
Sbjct: 334 SNKGGNAFSEVD---LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390
Query: 753 GLQELFPKLEYL 764
L +LE+L
Sbjct: 391 NFLGL-EQLEHL 401
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 48/309 (15%), Positives = 98/309 (31%), Gaps = 50/309 (16%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE- 525
++VL L + I IE ++ ++ L L L + L S
Sbjct: 46 LRACANLQVLILKSSR-----INTIEGDA------FYSLGSLEHLDLSDNH-LSSLSSSW 93
Query: 526 ISYLTSLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECFLLDGIPKK-LSLLSKLQV 582
L+SL+ L+L L L +L L I I + + L+ L
Sbjct: 94 FGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152
Query: 583 L--KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLL 640
L K + + + L+ + + LT++++ F E L
Sbjct: 153 LEIKALSLRN-----------YQSQSLKSIRDIHHLTLHLSESAFLLEI-----FADILS 196
Query: 641 QLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPD 700
++ + + P + + +K L + +T+ S + KL + +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS-- 254
Query: 701 EKLPSWVHPYSFKNLKNLYIRGGRLNSLEG-SEWETVKVLRLKYL----NELKIDWKGLQ 755
F + + + + SE V+ + ++ L L D +
Sbjct: 255 --------EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 756 ELFPKLEYL 764
L K++ +
Sbjct: 307 SLLEKVKRI 315
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 46/310 (14%), Positives = 101/310 (32%), Gaps = 45/310 (14%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
WF L +K L L ++ N+ L+ L + + E+
Sbjct: 92 SWFGPLSSLKYLNLM----------GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 525 E-ISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582
+ LTSL L+++A +L + + ++ + HL + + +LS ++
Sbjct: 142 IDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQL 642
L+ + L E ++KL + T +F LL+L
Sbjct: 201 LELRDTNLARFQFS------PLPVDEVSSPMKKLAFRGSV--------LTDESFNELLKL 246
Query: 643 KVSWGGGSANKSTK-PEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE 701
S + G + +++ + + +L F
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL-------GKVETVTIRRLHIPQFYLF 299
Query: 702 KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLN-------ELKIDWKGL 754
S V+ + +K + + ++ + S + +K L++L+ E +
Sbjct: 300 YDLSTVY-SLLEKVKRITVENSKVFLVPCSFSQHLK--SLEFLDLSENLMVEEYLKNSAC 356
Query: 755 QELFPKLEYL 764
+ +P L+ L
Sbjct: 357 KGAWPSLQTL 366
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 45/318 (14%), Positives = 93/318 (29%), Gaps = 41/318 (12%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE- 525
F L ++ L +G ++ GL ++ EL + +L ++ S+
Sbjct: 119 FPNLTNLQTLRIGNVET-------FSEIRRIDFAGLTSLNELEIKALS----LRNYQSQS 167
Query: 526 ISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585
+ + + L L + L L S+ +L++ + L L + +K
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227
Query: 586 FVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTV---LAFKRLLQ 641
D + L + + +L + +N + S V L +
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
Query: 642 LKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFR---------TRVTERSQHVESKLEK 692
++ L K + V LE
Sbjct: 288 IRRLH--IPQFYLFYDLSTVYSL-------LEKVKRITVENSKVFLVPCSFSQHLKSLEF 338
Query: 693 LDFQ--CFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYL----NE 746
LD +E L + ++ +L+ L + L S++ + + + L L N
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398
Query: 747 LKIDWKGLQELFPKLEYL 764
Q K+ +L
Sbjct: 399 FHPMPDSCQWP-EKMRFL 415
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQG--MSGIQELPS 524
L+ ++ L L + + ++++ + L+ L L + +Q+
Sbjct: 330 SQHLKSLEFLDLSE-----NLMVEEYLKNSACKGAWPS---LQTLVLSQNHLRSMQKTGE 381
Query: 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584
+ L +L LD+ +PD + + L++S + + + L+VL
Sbjct: 382 ILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT--CIPQTLEVLD 437
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 16/152 (10%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE- 525
FS L ++VL LG EI + + ++ + + L + +L
Sbjct: 401 FSWLGHLEVLDLG----------LNEIGQELTGQEWRGLENIFEIYLSY-NKYLQLTRNS 449
Query: 526 ISYLTSLEILDLR--ACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+ + SL+ L LR A N+D P L++LT LD+S + + L L KL++L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Query: 584 K--GFVISDHAEDDRRWKRWCSLKDLEKLEHL 613
++ + LK L L L
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE- 525
F++ ++ L +G I +E E + + L++L+LQ + +L +
Sbjct: 45 FTRYSQLTSLDVGFNT-----ISKLEPEL------CQKLPMLKVLNLQHNE-LSQLSDKT 92
Query: 526 ISYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
++ T+L L L + ++ K+ + K K+L LD+S L L LQ L
Sbjct: 93 FAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 465 DWFSKLEKIKVLYLGRWQ-STVDDIP-----------------HIEIESTDYLKGLKNMK 506
+ F+ + ++ L L R VD P +I + D L+GL+ ++
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507
Query: 507 EL-----RLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLD 560
L L L + + L+ L IL+L + D++ + L L +D
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIID 566
Query: 561 ISECFLLDGIPKKLSLLSKLQVL 583
+ L + L+ L
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSL 589
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 46/320 (14%), Positives = 93/320 (29%), Gaps = 43/320 (13%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
F + ++ L+L + T+ L +R LSL + +
Sbjct: 189 GCFHAIGRLFGLFLNN--------VQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSN 239
Query: 525 EI---SYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580
T+L +LDL NL+ + D L L + + + L L +
Sbjct: 240 TTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 581 QVLKGFVISDHAEDDRRWKRWCSLKD--LEKLEHLRKLTININSEKFQTENLSTVLAFKR 638
+ L + + + D + L+ L L + N +
Sbjct: 299 RYLN--LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN--DIPGIKSNMFTGLIN 354
Query: 639 LLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFR------TRVTERSQHVESKLEK 692
L L +S + ++ + L +++ + LE
Sbjct: 355 LKYLSLSN-----SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 693 LDFQCFPDEKLPSWVHPYSFKNLKNL---YIRGGRLNSLEGSEWETV---KVLRLKYLNE 746
LD ++ + ++ L+N+ Y+ + L + + V + L L+
Sbjct: 410 LDLG---LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR-VA 465
Query: 747 LKIDWKGLQEL--FPKLEYL 764
LK L L
Sbjct: 466 LKNVDSSPSPFQPLRNLTIL 485
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQG--MSGIQEL 522
+ F K + + L L + ++ + ++ L+ L L + ++
Sbjct: 115 NPFVKQKNLITLDLSHNG-----LSSTKLGT------QVQLENLQELLLSNNKIQALKSE 163
Query: 523 PSEISYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPKKLSL---LS 578
+I +SL+ L+L + + + P + L L ++ L + +KL L +
Sbjct: 164 ELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222
Query: 579 KLQVL 583
++ L
Sbjct: 223 SIRNL 227
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECF 565
+ + + ++P ++ T++ +L+L L +L + LT LD+
Sbjct: 5 SHEVADCSHL-KLTQVPDDL--PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 566 LLDGIPKKLSLLSKLQVL 583
+ P+ L L+VL
Sbjct: 61 ISKLEPELCQKLPMLKVL 78
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 462 FKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE 521
D LEK+++L L + + + + LK + L +L+L+ +G E
Sbjct: 495 INDDMLEGLEKLEILDLQ--HNNLARLWK-HANPGGPIYFLKGLSHLHILNLES-NGFDE 550
Query: 522 LPSE-ISYLTSLEILDLRACYN-LDKLPDEI-GKLKSLTHLDISECFLLDGIPKKLS-LL 577
+P E L L+I+DL N L+ LP + SL L++ + + K
Sbjct: 551 IPVEVFKDLFELKIIDLG--LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Query: 578 SKLQVL 583
L L
Sbjct: 609 RNLTEL 614
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 52/316 (16%), Positives = 98/316 (31%), Gaps = 81/316 (25%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIE--------------IESTDYLKGLKNMKELRLLS 512
+LE I L + + V I IE I L L + L + +
Sbjct: 40 QEELESITKLVVAGEK--VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGT 97
Query: 513 LQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK 572
+ I ++ + + LT+L L L N+ + + L + L++ L
Sbjct: 98 NK----ITDISA-LQNLTNLRELYLNED-NISDIS-PLANLTKMYSLNLGANHNL-SDLS 149
Query: 573 KLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLT---ININSEKFQTEN 629
LS ++ L L +++ +KD+ + +L L +N N
Sbjct: 150 PLSNMTGLNYLT---VTE-----------SKVKDVTPIANLTDLYSLSLNYN-------Q 188
Query: 630 LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESK 689
+ + L L N+ T P + +T+
Sbjct: 189 IEDISPLASLTSLHYFTAYV--NQITDITP---------VANMTR--------------- 222
Query: 690 LEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEG-SEWETVKVLRLKYLNELK 748
L L L + L L I +++ + + +K+L + N++
Sbjct: 223 LNSLKIGNNKITDLSPLAN---LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS-NQIS 278
Query: 749 IDWKGLQELFPKLEYL 764
D L L +L L
Sbjct: 279 -DISVLNNL-SQLNSL 292
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 33/151 (21%)
Query: 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527
+ L + L + + L+++ +L + + + I
Sbjct: 19 ADLAEGIRAVLQ----------KASVTDVVTQEELESITKLVVAG----EKVASIQ-GIE 63
Query: 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFV 587
YLT+LE L+L + + + L LT+L I + +S L L L+
Sbjct: 64 YLTNLEYLNLNGN-QITDIS-PLSNLVKLTNLYIGTNKI-----TDISALQNLTNLRELY 116
Query: 588 ISDHAEDDRRWKRWCSLKDLEKLEHLRKLTI 618
+++ ++ D+ L +L K+
Sbjct: 117 LNE-----------DNISDISPLANLTKMYS 136
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 46/197 (23%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLS--LQGMSGIQELP- 523
S + + L + +++ + L ++ L L ++ +S + L
Sbjct: 151 LSNMTGLNYLTVT----------ESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS 200
Query: 524 --------------SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDG 569
+ ++ +T L L + + L + L LT L+I +
Sbjct: 201 LHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLS-PLANLSQLTWLEIGTNQI--- 255
Query: 570 IPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLT-ININSEKFQTE 628
++ + L LK + + D+ L +L +L + +N+ + E
Sbjct: 256 --SDINAVKDLTKLKMLNVGS-----------NQISDISVLNNLSQLNSLFLNNNQLGNE 302
Query: 629 NLSTVLAFKRLLQLKVS 645
++ + L L +S
Sbjct: 303 DMEVIGGLTNLTTLFLS 319
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 29/134 (21%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLS--LQGMSGIQELP- 523
+ + ++ L +G + +I L L + L + + + ++ +++L
Sbjct: 217 VANMTRLNSLKIG----------NNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK 266
Query: 524 --------------SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDG 569
S ++ L+ L L L ++ + IG L +LT L +S+ + D
Sbjct: 267 LKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 570 IPKKLSLLSKLQVL 583
P L+ LSK+
Sbjct: 327 RP--LASLSKMDSA 338
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 36/184 (19%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
F KL ++ L L + G ++K L L + + S
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCS------QSDFGTTSLKYLDLSFNG----VITMSSNF 97
Query: 527 SYLTSLEILDLRACYNLDKLPDE--IGKLKSLTHLDISECFLLDGIPKK-LSLLSKLQVL 583
L LE LD + NL ++ + L++L +LDIS + LS L+VL
Sbjct: 98 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVL 155
Query: 584 KGFVISDHAEDDRRWKRWCSLKD--LEKLEHLRKLTININSEKFQTENLSTV--LAFKRL 639
K ++ + +L +L L ++ L + AF L
Sbjct: 156 K---MAG-------NSFQENFLPDIFTELRNLTFLDLSQC-------QLEQLSPTAFNSL 198
Query: 640 LQLK 643
L+
Sbjct: 199 SSLQ 202
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
F+ L ++VL + E D L+N L L L +++L
Sbjct: 144 GIFNGLSSLEVLKMAGNS-------FQENFLPDIFTELRN---LTFLDLSQCQ-LEQLSP 192
Query: 525 EI-SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDISECFLLDGIPKKL--SLLSKL 580
+ L+SL++L++ N L L SL LD S + K+ S L
Sbjct: 193 TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSL 250
Query: 581 QVL 583
L
Sbjct: 251 AFL 253
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 19/151 (12%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG-LKNMKELRLLSLQGMSGIQELPSE 525
LE ++ L L H +IE++D L+N+ L+ L+L L +E
Sbjct: 346 LENLENLRELDLS----------HDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTE 394
Query: 526 I-SYLTSLEILDLRACYNLDKLPDE--IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582
LE+LDL L + L L L++S L + L LQ
Sbjct: 395 AFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453
Query: 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHL 613
L + + ++ SL+ L +LE L
Sbjct: 454 LN---LQGNHFPKGNIQKTNSLQTLGRLEIL 481
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 42/279 (15%), Positives = 80/279 (28%), Gaps = 39/279 (13%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHL 559
+ L L L I + + L+ L L A L + + K+L HL
Sbjct: 53 FSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHL 110
Query: 560 DISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLE-----KLEHLR 614
+ + L L+ L + + ++ E L+
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESL---YLG-----------SNHISSIKLPKGFPTEKLK 156
Query: 615 KLTININS-EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLT 673
L N+ E++S L L L ++ N EP F
Sbjct: 157 VLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNG-----NDIAGIEPGAFDSAVFQSLNFG 210
Query: 674 KFRTRVTERSQHVESKLEKLDFQCFPDEKL----PSWVHPYSFKNLKNLYIRGGRLNSLE 729
+ + S ++ L F D P+ +++++ ++ ++
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270
Query: 730 G---SEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLE 765
+ ++ L L L GL L L+ L
Sbjct: 271 SNTFHCFSGLQELDLTA-THLSELPSGLVGL-STLKKLV 307
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 33/188 (17%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQG--MSGIQEL 522
+ F + ++++L L ++ D +N+ L++L+L +
Sbjct: 394 EAFKECPQLELLDLA----------FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-- 441
Query: 523 PSEISYLTSLEILDLRAC---YNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579
L +L+ L+L+ + + + L L L +S C L + L
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501
Query: 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEK--LEHLRKLTININSEKFQTENLSTVLAFK 637
+ + +S L L HL+ + +N+ S S +
Sbjct: 502 MNHVD---LSH-----------NRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILS 547
Query: 638 RLLQLKVS 645
+ + +
Sbjct: 548 QQRTINLR 555
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
+ F ++ L L + + GL + L+ L L + + L
Sbjct: 272 NTFHCFSGLQELDLTA-----THLSELP-------SGLVGLSTLKKLVLSA-NKFENLCQ 318
Query: 525 E-ISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLDISECFL--LDGIPKKLSLLSKL 580
S SL L ++ +L + L++L LD+S + D +L LS L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378
Query: 581 QVL 583
Q L
Sbjct: 379 QSL 381
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
S ++ + + D I S +GL M + ++LQ + S
Sbjct: 224 NSTIQSLWLGTFED-----MDDEDI---SPAVFEGLCEMS-VESINLQKHY-FFNISSNT 273
Query: 527 -SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+ L+ LDL A +L +LP + L +L L +S + S L L
Sbjct: 274 FHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 48/334 (14%), Positives = 104/334 (31%), Gaps = 61/334 (18%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLS--LQGMSGIQEL 522
FS L ++ L + + + + L +K+L + + +L
Sbjct: 98 GSFSGLTSLENLVAVETK--------LASLESFPIGQLITLKKLNVAHNFIHSC----KL 145
Query: 523 PSEISYLTSLEILDLRACY---------------------------NLDKLPDEIGKLKS 555
P+ S LT+L +DL Y +D + D+ +
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205
Query: 556 LTHLDISECFLLDGIPKKLSL-LSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLR 614
L L + F I K L+ L V + +I +D+R + + +E L +
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHR--LILGEFKDERNLEIF-EPSIMEGLCDVT 262
Query: 615 KLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTK 674
+ ++++ + + ++ E +F ++L+
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG-----VSIKYLEDVPK---HFKWQSLSI 314
Query: 675 FRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734
R ++ + L+ L V + +L L + L+ +
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYS 371
Query: 735 TVKVLRLKYL----NELKIDWKGLQELFPKLEYL 764
+ L++L N I L +L++L
Sbjct: 372 DLGTNSLRHLDLSFNGAIIMSANFMGL-EELQHL 404
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
F LEK+ L + + +I+ GL + L L + G S S +
Sbjct: 420 FLSLEKLLYLDI--------SYTNTKIDFDGIFLGLTS---LNTLKMAGNSFKDNTLSNV 468
Query: 527 -SYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+ T+L LDL C L+++ L L L++S LL + L L L
Sbjct: 469 FANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 9e-06
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 502 LKNMKELRLLSLQGMSGIQELP--SEISYLTSLEILDLRACYNLDKLPDEI-GKLKSLTH 558
++EL+ L Q S ++ + S L L LD+ N D I L SL
Sbjct: 395 FMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNT 452
Query: 559 LDISECFLLDGIPKK-LSLLSKLQVL 583
L ++ D + + L L
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFL 478
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 16/120 (13%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
F L + L + + ++ N L L L ++++ +
Sbjct: 444 FLGLTSLNTLKM-------AGNSFKDNTLSNVFANTTN---LTFLDLSK-CQLEQISWGV 492
Query: 527 -SYLTSLEILDLRACYN-LDKLPDE-IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
L L++L++ +N L L +L SL+ LD S + L
Sbjct: 493 FDTLHRLQLLNMS--HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHL 559
N EL+ L L I+ + + L L L L + L SL +L
Sbjct: 52 FSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENL 109
Query: 560 DISECFLLDGIPKKLSLLSKLQVL 583
E L + L L+ L
Sbjct: 110 VAVETKLASLESFPIGQLITLKKL 133
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 508 LRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLDISECF 565
+ + L ++ L S S + L+ LDL C ++ + D+ L L++L ++
Sbjct: 34 TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP 91
Query: 566 LLDGIPKKLSLLSKLQVL 583
+ P S L+ L+ L
Sbjct: 92 IQSFSPGSFSGLTSLENL 109
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 34/178 (19%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
+ L+ + L+L + + + LK++K+L+ LSL+ GI ++ +
Sbjct: 86 LANLKNLGWLFLDENK-----VKDLS--------SLKDLKKLKSLSLEHN-GISDING-L 130
Query: 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGF 586
+L LE L L + + + +L L L + + + + L+ L L+
Sbjct: 131 VHLPQLESLYLGNN-KITDITV-LSRLTKLDTLSLEDNQI-----SDIVPLAGLTKLQNL 183
Query: 587 VISDHAEDDRRWKRWCSLKDLEKLEHLRKLT-ININSEKFQTENLSTVLAFKRLLQLK 643
+S + DL L L+ L + + S++ + ++ +K
Sbjct: 184 YLSK-----------NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 33/150 (22%)
Query: 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527
+ L + + L ++ ++ S I+ + I
Sbjct: 21 DAFAETIKDNLKKKS----------VTDAVTQNELNSIDQIIA----NNSDIKSV-QGIQ 65
Query: 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFV 587
YL ++ L L N + LK+L L + E + K LS L L+ LK
Sbjct: 66 YLPNVTKLFLN--GNKLTDIKPLANLKNLGWLFLDENKV-----KDLSSLKDLKKLKSLS 118
Query: 588 ISDHAEDDRRWKRWCSLKDLEKLEHLRKLT 617
+ + D+ L HL +L
Sbjct: 119 LEH-----------NGISDINGLVHLPQLE 137
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
L ++ L L R + + S L+ L L + + S
Sbjct: 343 EVDLPSLEFLDLSR-----NGLSFKGCCSQS----DFGTTSLKYLDLSFNG-VITMSSNF 392
Query: 527 SYLTSLEILDLRACYN-LDKLPDEI--GKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
L LE LD + ++ L ++ + L++L +LDIS + LS L+VL
Sbjct: 393 LGLEQLEHLDFQ--HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 584 K 584
K
Sbjct: 451 K 451
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 46/332 (13%), Positives = 103/332 (31%), Gaps = 56/332 (16%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRL-----------LSL 513
FS L ++ L + + LK +KEL +
Sbjct: 94 GAFSGLSSLQKLVAVETN--------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 514 QGMSGIQEL-----------PSEISYLTSLEILDLR---ACYNLDKLPDEIGKLKSLTHL 559
++ ++ L +++ L + +L+L + ++ + K L L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205
Query: 560 DISECFLLDGIPKK-LSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTI 618
+ F + K + L+ L+V + ++ ++ +++ LE L +L
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHR--LVLGEFRNEGNLEKF-DKSALEGLCNLTIEEF 262
Query: 619 NINSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTR 678
+ + +++ + F L + + K NF + L +
Sbjct: 263 RLAYLDYYLDDIIDL--FNCLTNVSSFSLVSVTIERVKDFSY-----NFGWQHLELVNCK 315
Query: 679 VTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKV 738
+ L++L F S V +L+ L + N L +
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVD---LPSLEFLDLSR---NGLSFKGCCSQSD 369
Query: 739 LRLKYLNELKIDWKGLQEL------FPKLEYL 764
L L + + G+ + +LE+L
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 48/303 (15%), Positives = 89/303 (29%), Gaps = 57/303 (18%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYN-LDKLPDEI-GKLKSLTH 558
+ EL++L L IQ + L+ L L L N + L L SL
Sbjct: 48 FFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILT--GNPIQSLALGAFSGLSSLQK 104
Query: 559 LDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLE------KLEH 612
L E L + L L+ L ++ + L +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKEL--------------NVAHNLIQSFKLPEYFSNLTN 150
Query: 613 LRKLTININSEKFQTENLSTVL--AFKRLLQLKVSWGGG--SANKSTKPEPQTGRK---- 664
L L ++ N + ++ + L Q+ + S N +P ++
Sbjct: 151 LEHLDLSSN-------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203
Query: 665 -----DNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLY 719
+NF + K + + + +L F +E + + L NL
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLE-----VHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 720 IRGGRLNSLEGSEWETVKV------LRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVT 773
I RL L+ + + + + L + I+ ++LE C
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 774 LCP 776
Sbjct: 319 FPT 321
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 47/312 (15%), Positives = 106/312 (33%), Gaps = 45/312 (14%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE- 525
+ L + L L I+ + GL ++++L + + + L +
Sbjct: 72 YQSLSHLSTLILTGNP--------IQSLALGAFSGLSSLQKLVAVE----TNLASLENFP 119
Query: 526 ISYLTSLEILDLRACYNL---DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582
I +L +L+ L++ +NL KLP+ L +L HLD+S + L +L ++ +
Sbjct: 120 IGHLKTLKELNVA--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 583 LKGFVISDHAEDDRRWKRWCSLKDLE----KLEHLRKLTININSEKFQ-TENLSTVLAFK 637
L + + ++ K L KLT+ N + + LA
Sbjct: 178 LNLSLDLSL----------NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227
Query: 638 RLLQLKVSWGGGSANKSTKPEP-----QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEK 692
+ +L + N + + F + L + + + + + +
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSS 286
Query: 693 LDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWK 752
E++ + + ++L + + + +++K L
Sbjct: 287 FSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-- 341
Query: 753 GLQELFPKLEYL 764
+L P LE+L
Sbjct: 342 SEVDL-PSLEFL 352
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 43/308 (13%), Positives = 89/308 (28%), Gaps = 53/308 (17%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
L K+++L + + I +++I K + ++ L L + + ++
Sbjct: 41 ILSLSKLRILIISHNR-----IQYLDISV---FKFNQELEYLDLSHNK----LVKISCH- 87
Query: 527 SYLTSLEILDLRACYN-LDKLPD--EIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+L+ LDL +N D LP E G + L L +S L ++ L+ +VL
Sbjct: 88 -PTVNLKHLDL--SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
Query: 584 KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLK 643
+ ++D L+D E L + F + +A L +
Sbjct: 145 LVLGETYGEKEDPE-----GLQDF-NTESLHIVFPTNKEFHFILDVSVKTVANLELSNI- 197
Query: 644 VSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL 703
K + F + + + + + L+
Sbjct: 198 --------------------KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 704 PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYL-------NELKIDWKGLQE 756
+ + I +L LK L + + E
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 757 LFPKLEYL 764
+F +
Sbjct: 298 IFSNMNIK 305
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 20/148 (13%)
Query: 441 DCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500
++K I + + FP+ + + + + + +
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQS--YIYEIFSNMNIKNFTVSGTRMVHML--------CPS 321
Query: 501 GLKNMKELRLLSLQGMSGIQELPSEI-SYLTSLEILDLRACYNLDKLPDEIG---KLKSL 556
+ L + + + E +LT LE L L+ L +L ++KSL
Sbjct: 322 KISPFLHLDFSNNL----LTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSL 376
Query: 557 THLDISECFLLDGIPKKL-SLLSKLQVL 583
LDIS+ + K S L L
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSL 404
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 8/128 (6%)
Query: 196 SSSDDSDAQQRRRINQSKDLPNMADKTRFKEHDFFIEFKKIFQSL-GNDQSCLLCFAVFP 254
Q +S+ L + T + + ++ + L D+S L V P
Sbjct: 341 EPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMP 400
Query: 255 ENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVANS 314
I +L + E E + L+ ++G +L R +
Sbjct: 401 PGVDIPVKLWSCVIPVDICSNE----EEQLDDEVADRLKRLSKRGALLSGK---RMPVLT 453
Query: 315 FRMSPLVR 322
F++ ++
Sbjct: 454 FKIDHIIH 461
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 57/321 (17%), Positives = 95/321 (29%), Gaps = 71/321 (22%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN--MKELRLLSLQGMSGIQELPS 524
++ Y + + P + + L++ ++ L L + G+ LP
Sbjct: 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE 88
Query: 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL------- 577
+L SL +C +L +LP+ LKSL + + L +P L L
Sbjct: 89 LPPHLESLVA----SCNSLTELPELPQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQL 143
Query: 578 ------SKLQVLKGFVISDHAEDDRRWKRWCSLKDL-EKLEHLRKLTININSEKFQTENL 630
LK + + SLK L + L + N Q E L
Sbjct: 144 EKLPELQNSSFLKIIDVDN-----------NSLKKLPDLPPSLEFIAAGNN----QLEEL 188
Query: 631 STVLAFKRLLQLKVSWGGGSANK-STKPEPQTGRKDNFFIKTLTKFR------TRVTERS 683
+ L + N P+ +L + E
Sbjct: 189 PELQNLPFLTAIYADN-----NSLKKLPD---------LPLSLESIVAGNNILEELPELQ 234
Query: 684 QHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKY 743
L + + LP +L+ L +R L L L +
Sbjct: 235 NL--PFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLTDLPEL------PQSLTF 281
Query: 744 LNELKIDWKGLQELFPKLEYL 764
L+ + + GL EL P L YL
Sbjct: 282 LDVSENIFSGLSELPPNLYYL 302
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 16/94 (17%)
Query: 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLD 560
++E S + E+P E + S P G+ + +
Sbjct: 9 SNTFLQEPLRHSSN----LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64
Query: 561 ISECFL------------LDGIPKKLSLLSKLQV 582
+ +C L +P+ L L
Sbjct: 65 LRDCLDRQAHELELNNLGLSSLPELPPHLESLVA 98
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 10/113 (8%)
Query: 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGI-QELPSEISYLT 530
I L L ++ + L ++ L L L + + E L
Sbjct: 196 TITQLNLSGYRKNLQK------SDLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247
Query: 531 SLEILDLRACYNL-DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582
L+ L L CY++ + E+G++ +L L + + L LQ+
Sbjct: 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 300
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 34/178 (19%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
+ L+ + L+L + I + LK++K+L+ LSL+ +GI ++ +
Sbjct: 83 LTNLKNLGWLFLDENK-----IKDLS--------SLKDLKKLKSLSLEH-NGISDING-L 127
Query: 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGF 586
+L LE L L N + +L L L + + + + L+ L L+
Sbjct: 128 VHLPQLESLYLG--NNKITDITVLSRLTKLDTLSLEDNQI-----SDIVPLAGLTKLQNL 180
Query: 587 VISDHAEDDRRWKRWCSLKDLEKLEHLRKLT-ININSEKFQTENLSTVLAFKRLLQLK 643
+S + DL L L+ L + + S++ + ++ +K
Sbjct: 181 YLSK-----------NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
++ L L + T+ L R + + S + ++ +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETN---SLIKKFTFRNVKITDES-LFQVMKLL 273
Query: 527 SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDIS 562
+ ++ L L+ L +PD I +L SL + +
Sbjct: 274 NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 40/191 (20%)
Query: 465 DWFSKLEKIKVLYLG--RWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQEL 522
WF L + L L +++ + T L ++ LR+ + M ++
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKT---------LGETSLFSHLTKLQILRVGN---MDTFTKI 165
Query: 523 PSEI-SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDISE---CFLLDGIPKKLSLL 577
+ + LT LE L++ A +L + +++++HL + LL+ S +
Sbjct: 166 QRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224
Query: 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKD-----LEKLEHLRKLTININSEKFQTENLST 632
L+ L+ + + L L K R + I S
Sbjct: 225 ECLE-LRDTDLD--------TFHFSELSTGETNSLIKKFTFRNVKITDES------LFQV 269
Query: 633 VLAFKRLLQLK 643
+ ++ L
Sbjct: 270 MKLLNQISGLL 280
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 21/137 (15%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDI 561
+KEL + + + LP + L L + L +LP+ + L S T +++
Sbjct: 240 PSELKELMVSGNR----LTSLPMLP---SGLLSLSVYRN-QLTRLPESLIHLSSETTVNL 291
Query: 562 SECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLK-------------DLE 608
L + + L ++ G +I + +L +
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351
Query: 609 KLEHLRKLTININSEKF 625
+ N++ F
Sbjct: 352 PADRWHMFGQEDNADAF 368
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDI 561
++EL + Q + LP+ S L L + + L LP L L +
Sbjct: 140 PPGLQELSVSDNQ----LASLPALPSELCKLWAYNNQ----LTSLPMLPS---GLQELSV 188
Query: 562 SECFLLDGIPKKLSLLSKLQVL 583
S+ L +P S L KL
Sbjct: 189 SDNQLAS-LPTLPSELYKLWAY 209
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 7e-05
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF 565
+ L + + + LP+ L +LE+ + L LP L L+
Sbjct: 61 AHITTLVIPDNN-LTSLPALPPELRTLEVSGNQ----LTSLPVLPPGLLELSIFSNPLT- 114
Query: 566 LLDGIPKKLSLLS 578
L +P L L
Sbjct: 115 HLPALPSGLCKLW 127
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDI 561
++EL + Q + LP+ S L L + R L LP L L +
Sbjct: 180 PSGLQELSVSDNQ----LASLPTLPSELYKLWAYNNR----LTSLPALPS---GLKELIV 228
Query: 562 SECFLLDGIPKKLSLLSKLQV 582
S L +P S L +L V
Sbjct: 229 SGN-RLTSLPVLPSELKELMV 248
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
F+++ + L LG +E S +GL N+K L L I+++P+
Sbjct: 165 YAFNRVPSLMRLDLGEL-------KKLEYISEGAFEGLFNLKYLNLGMCN----IKDMPN 213
Query: 525 EISYLTSLEILDLRACYN-LDKLPDE-IGKLKSLTHLDISECFLLDGIPKK-LSLLSKLQ 581
++ L LE L++ N ++ L SL L + + I + L+ L
Sbjct: 214 -LTPLVGLEELEMS--GNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLV 269
Query: 582 VL 583
L
Sbjct: 270 EL 271
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
F+ L + L L + I + + L ++EL L + I+ +PS
Sbjct: 119 FNGLASLNTLELFDNW-----LTVIP---SGAFEYLSKLRELWLRNNP----IESIPSYA 166
Query: 527 -SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+ + SL LDL L+ + + L +L +L++ C + +P L+ L L+ L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEEL 223
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
F+ L + L L + + I L +KEL L + I+ +PS
Sbjct: 108 FNGLANLNTLELFDNR-----LTTI---PNGAFVYLSKLKELWLRNNP----IESIPSYA 155
Query: 527 -SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
+ + SL LDL L + + L +L +L+++ C L IP L+ L KL L
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDEL 212
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 16/121 (13%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
F L K+K L+L I I + + LR L L + + +
Sbjct: 130 GAFVYLSKLKELWLRNNP-----IESIPSYA------FNRIPSLRRLDLGELKRLSYISE 178
Query: 525 EI-SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKK-LSLLSKLQV 582
L++L L+L C NL ++P+ + L L LD+S L I L LQ
Sbjct: 179 GAFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQK 235
Query: 583 L 583
L
Sbjct: 236 L 236
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
F+++ ++ L LG + S +GL N++ L L ++E+P+
Sbjct: 154 YAFNRIPSLRRLDLGEL-------KRLSYISEGAFEGLSNLRYLNLAMCN----LREIPN 202
Query: 525 EISYLTSLEILDLRACYN-LDKLPDEI-GKLKSLTHLDISECFLLDGIPKK-LSLLSKLQ 581
++ L L+ LDL N L + L L L + + + I + L L
Sbjct: 203 -LTPLIKLDELDLS--GNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLV 258
Query: 582 VL 583
+
Sbjct: 259 EI 260
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
Query: 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSE--ISYL 529
K+ L + + + +E+ D L L + L++L L + + S
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTPSEN 450
Query: 530 TSLEILDL-----RACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
SLE L L + + + D L L L ++ +L P S L+ L+ L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 50/289 (17%), Positives = 97/289 (33%), Gaps = 34/289 (11%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEI-SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHL 559
+ +K+L++L+L I ++ E L +L++L+L L +L L + ++
Sbjct: 286 FETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYI 343
Query: 560 DISECFLLDGIPKKLSLLSKLQVLKGFVISDHA-EDDRRWKRWCSL-KDLEKLEHLRKLT 617
D+ + + + L KLQ L + D+A + KL L K+
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLD---LRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 618 ININSEKFQT---ENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTL-- 672
+ N ENL + R+ L++ + N+ + +N ++ L
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILIL--NQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 673 ------TKFRTRVTERSQHVESKLEKLD-----FQCFPDEKLPSWVHPYSFKNLKNLYIR 721
+ T + S L+ L P L+ L +
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH------LTALRGLSLN 512
Query: 722 GGRLNSLEGSEWET-VKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKC 769
RL L ++ +++L + L + L KF C
Sbjct: 513 SNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC 561
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 50/310 (16%), Positives = 90/310 (29%), Gaps = 67/310 (21%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
D F L + L L + + Y + LK + L LS + + L
Sbjct: 91 DAFQGLFHLFELRLYFCGLSDAVLK------DGYFRNLKALTRLD-LSKNQIRSL-YLHP 142
Query: 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584
L SL+ +D + + + + L+ L +S L + + +
Sbjct: 143 SFGKLNSLKSIDFSS-NQIFLVCEHE--LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Query: 585 GFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644
F LE L + ++ + +S AF +L +
Sbjct: 200 PF----------------RNMVLEIL-DVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 645 SWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLP 704
G + P+ N F + S + LD L
Sbjct: 243 MGAGFGFHNIKDPDQ------NTF--------------AGLARSSVRHLDLSHGFVFSLN 282
Query: 705 SWVHPYSFKNLKN---LYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQEL---- 757
F+ LK+ L + ++N + + L L L + + L EL
Sbjct: 283 ----SRVFETLKDLKVLNLAYNKINKIADEAFYG-----LDNLQVLNLSYNLLGELYSSN 333
Query: 758 ---FPKLEYL 764
PK+ Y+
Sbjct: 334 FYGLPKVAYI 343
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
+ + ++ L L + I +K L L S + + + E
Sbjct: 165 AASSDTLEHLNLQ----------YNFIYDVKGQVVFAKLKTLDLSSNK----LAFMGPEF 210
Query: 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDIS 562
+ + LR L + + ++L H D+
Sbjct: 211 QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 37/177 (20%)
Query: 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527
L + G + T L + L +G+ + +
Sbjct: 16 PALANAIKIAAG----------KSNVTDTVTQADLDGITTLSAFG----TGVTTI-EGVQ 60
Query: 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFV 587
YL +L L+L+ + L + L +T L++S L K +S ++ LQ +K
Sbjct: 61 YLNNLIGLELKDN-QITDLA-PLKNLTKITELELSGNPL-----KNVSAIAGLQSIKTLD 113
Query: 588 ISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644
++ D + L L +L+ L +++N ++ + L L+
Sbjct: 114 LTSTQITD--------VTPLAGLSNLQVLYLDLN-------QITNISPLAGLTNLQY 155
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 11/111 (9%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLE----ILDLRACYN-LDKLPDEIGKLKSL 556
++++ L + + ++ LP+ E R N + +P+ I L
Sbjct: 179 PESLEALDVSTNL----LESLPAVPVRNHHSEETEIFFRCR--ENRITHIPENILSLDPT 232
Query: 557 THLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDL 607
+ + + L I + LS + G I D ++ L D
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 21/132 (15%)
Query: 451 TLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRL 510
+ +N + + K EK + R + V + + EL+L
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRNE-AVSLLKECL---------INQFSELQL 66
Query: 511 LSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGI 570
L + LP + + +L++ L LP+ SL +LD + L +
Sbjct: 67 NRLN----LSSLPDNL--PPQITVLEITQN-ALISLPELPA---SLEYLDACDN-RLSTL 115
Query: 571 PKKLSLLSKLQV 582
P+ + L L V
Sbjct: 116 PELPASLKHLDV 127
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 43/188 (22%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
F L +K L +G +D+ +I + + L L+L+ + + +P+
Sbjct: 122 YMFQDLYNLKSLEVGD-----NDLVYISHRA------FSGLNSLEQLTLEKCN-LTSIPT 169
Query: 525 EI-SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582
E S+L L +L LR N++ + D +L L L+IS LD + L
Sbjct: 170 EALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228
Query: 583 LKGFVISDHAEDDRRWKRWCSLKDL-----EKLEHLRKLTININSEKFQTENLSTV--LA 635
L I+ C+L + L +LR L ++ N +ST+
Sbjct: 229 LS---ITH-----------CNLTAVPYLAVRHLVYLRFLNLSYN-------PISTIEGSM 267
Query: 636 FKRLLQLK 643
LL+L+
Sbjct: 268 LHELLRLQ 275
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524
+ S L + VL L +I I S K + L++L + + +
Sbjct: 170 EALSHLHGLIVLRLRH-----LNINAIRDYS------FKRLYRLKVLEISHWPYLDTMTP 218
Query: 525 EISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLDISECFLLDGIPKK-LSLLSKLQV 582
Y +L L + C NL +P + L L L++S + I L L +LQ
Sbjct: 219 NCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQE 276
Query: 583 L 583
+
Sbjct: 277 I 277
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 19/174 (10%)
Query: 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTS 531
+ L + D +E + +++ K+LR LSL G+ + +Y
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKK 457
Query: 532 LEILDLRACYNLDKLPDEIGK-LKSLTHLDISECFLLD-GIPKKLSLLSKLQVLKGFVIS 589
+E+L + + D + SL L+I +C D + S L ++ L +S
Sbjct: 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW---MS 514
Query: 590 DHAEDDRRWKRWCSLKD--LEKL-EHLRKLTININSEKFQTENLSTVLAFKRLL 640
CS+ + L + + KL + + E+ ++ +R+
Sbjct: 515 S-----------CSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVF 557
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 13/126 (10%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
L+++ + + + H ++ L + L L +
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHF-------PDTYTSLVSLNISCLASEVSFSALERLV 207
Query: 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF------LLDGIPKKLSLLSKL 580
+ +L+ L L L+KL + + L L + G+ LS +L
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267
Query: 581 QVLKGF 586
+ L GF
Sbjct: 268 RCLSGF 273
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 45/180 (25%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
+L + L I + G++ + L L + I L +
Sbjct: 38 EEQLATLTSLDCHNSS----------ITD---MTGIEKLTGLTKLICTSNN-ITTLD--L 81
Query: 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGF 586
S T+L L + L L + L LT+L+ L + LL+ L
Sbjct: 82 SQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNC---- 134
Query: 587 VISDHAEDDRRWKRWCSLK--DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644
+L D+ L +L ++N T L QL
Sbjct: 135 -------------ARNTLTEIDVSHNTQLTELDCHLN-------KKITKLDVTPQTQLTT 174
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 6e-05
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDEI-GK 552
+ D L L + L L ++ +Q L + L L L + L + +
Sbjct: 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHF 78
Query: 553 LKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
L+ L++S L+ + K LQ L
Sbjct: 79 TPRLSRLNLSFN-ALESLSWKTVQGLSLQEL 108
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSG--IQELPS 524
++L + L L + I E+ + N++ L L S + L
Sbjct: 60 PTRLTNLHSLLLSHNH-----LNFISSEA---FVPVPNLRYLDL------SSNHLHTLDE 105
Query: 525 EI-SYLTSLEILDLRACYN-LDKLPDEI-GKLKSLTHLDISECFLL---DGIPKKLSLLS 578
+ S L +LE+L L N + + + L L +S+ + + K + L
Sbjct: 106 FLFSDLQALEVLLLY--NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 579 KLQVLK 584
KL +L
Sbjct: 164 KLMLLD 169
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 20/161 (12%), Positives = 51/161 (31%), Gaps = 14/161 (8%)
Query: 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTH 558
+KG +L+ L L + + + E + + LR L + + ++L H
Sbjct: 184 VKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEH 241
Query: 559 LDISECFL-LDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLT 617
D+ + S ++Q + ++ + + ++ E+
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTV-----------AKQTVKKLTGQNEEECTVPTLGH 290
Query: 618 ININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPE 658
+ + L + + + G GS + + E
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 504 NMKELRLLSLQGMSGIQELPSEI-SYLTSLEILDLRACYN-LDKL-PDEIGKLKSLTHLD 560
N ++ + S +++ + + +++ LDL N L ++ ++ L L+
Sbjct: 8 NGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLS--GNPLSQISAADLAPFTKLELLN 64
Query: 561 ISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTINI 620
+S L + + L LS L+ L +++ +++L + L
Sbjct: 65 LSSNVLYETLD--LESLSTLRTLD---LNN-----------NYVQELLVGPSIETLHAAN 108
Query: 621 NS 622
N+
Sbjct: 109 NN 110
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 16/153 (10%)
Query: 492 EIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551
E E+ Y LK + +R L + L + + + ++ L + + +
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE 460
Query: 552 KLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLE 611
+L +THLD+S L +P L+ L L+VL+ SD+ ++ + L
Sbjct: 461 QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQ---ASDN--------ALENVDGVANLP 508
Query: 612 HLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644
L++L + N + + + + +L +
Sbjct: 509 RLQELLLCNN----RLQQSAAIQPLVSCPRLVL 537
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 30/123 (24%)
Query: 487 DIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLR-------- 538
+ H ++ +L+ L + L L + ++ LP ++ L LE+L
Sbjct: 447 HLAHKDLTVLCHLEQLLLVTHLDLSHNR----LRALPPALAALRCLEVLQASDNALENVD 502
Query: 539 ---ACYNLDKL------------PDEIGKLKSLTHLDISE---CFLLDGIPKKLSLLSKL 580
L +L + L L++ C + +L +
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
Query: 581 QVL 583
+
Sbjct: 563 SSI 565
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 17/98 (17%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 491 IEIESTDYLKGLKNMKELRLLSLQGMS--GIQELPSEISYLTSLEILDLRACYNL-DKLP 547
I D+++GL+ ++++RL + ++ L + S+ +++ +C N+ DK
Sbjct: 73 IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
Query: 548 DEIGKLKSLTHLDISECFLL-DGIPKKLSLLSKLQVLK 584
+ ++L +L +S+ + + + + L L+
Sbjct: 133 IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 502 LKNMKELRLLSLQGMSGIQELPSEI-SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHL 559
N+ + + + +Q+L S L+ + +++R NL + + +L L L
Sbjct: 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110
Query: 560 DISECFLLDGIP--KKLSLLSKLQVL 583
I L P K+ +L
Sbjct: 111 GIFNTGLKM-FPDLTKVYSTDIFFIL 135
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 31/140 (22%)
Query: 465 DWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRL-------------- 510
F+ L ++ V+ LG I + +G+K + +R+
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIEN------GAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 511 ----LSLQGMSGIQELPSEI-SYLTSLEILDLRACYN-LDKLPDEI-GKLKSLTHLDISE 563
L L G I ++ + L +L L L +N + + + L L ++
Sbjct: 193 SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLS--FNSISAVDNGSLANTPHLRELHLNN 249
Query: 564 CFLLDGIPKKLSLLSKLQVL 583
L +P L+ +QV+
Sbjct: 250 N-KLVKVPGGLADHKYIQVV 268
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 16/120 (13%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
F + +L+L + I+ + L L L + ++ +
Sbjct: 52 FRACRNLTILWLHSNV-----LARIDA------AAFTGLALLEQLDLSDNAQLRSVDPAT 100
Query: 527 -SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDISECFLLDGIPKK-LSLLSKLQVL 583
L L L L C L +L + L +L +L + + L +P L L L
Sbjct: 101 FHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHL 158
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 45/211 (21%)
Query: 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526
FS ++ + + + IE + N+ +L + ++ + + + E
Sbjct: 50 FSGFGDLEKIEISQNDVL----EVIEADV------FSNLPKLHEIRIEKANNLLYINPEA 99
Query: 527 -SYLTSLEILDLRACYNLDKLPDEI-GKLKSLTHLDISECFLLDGIPKKL--SLLSKLQV 582
L +L+ L + + LPD LDI + + I + L + +
Sbjct: 100 FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158
Query: 583 LKGF-----VISDHA--------EDDRRWKRWCSLKD--LEKLEHLRKLTININ------ 621
L I + A + L + L I+
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218
Query: 622 SEKFQ---------TENLSTVLAFKRLLQLK 643
S + T NL + ++L+ L
Sbjct: 219 SYGLENLKKLRARSTYNLKKLPTLEKLVALM 249
|
| >1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 4e-04
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 9 PSTAPTMYSEIGNIIDILSNLHERVSKEKRPPHTPQSTQDHKKPPPPPPPPPPPQ-PPTT 67
P P EI NI+ + +VS P PPPPPPP P PP
Sbjct: 74 PKGYPGRVVEIINIL-----VKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPY 128
Query: 68 TEESVT 73
E + T
Sbjct: 129 VEPTTT 134
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 62/357 (17%), Positives = 110/357 (30%), Gaps = 55/357 (15%)
Query: 451 TLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL-KNMKELR 509
T+ P+ F L +K+ R + T ++ + N+++L+
Sbjct: 56 TMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115
Query: 510 LLSLQGM----SGIQELPSEISYLTSLEILDLRACYNL-DKLPDEIGK-LKSLTHLDISE 563
+ + M + L + LE L L C I + + L + E
Sbjct: 116 SVHFRRMIVSDLDLDRLAK--ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173
Query: 564 CFLLDGIPKKLSLLSK----LQVLK-----GFVISDH-----AEDDRRWKR----WCSLK 605
+ K L L++ L+VL IS A + R +
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233
Query: 606 DLEKL----EHLRKL-TININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660
+L +L + ++N + E ++ ++L +L +S+ G + P
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293
Query: 661 TGRKDNFFIKTLTKFRTRVTERSQHVESK---LEKLDFQ-CFPDEKLPSWVHPYSFKNLK 716
RK + + TE + K LE L+ + D L K LK
Sbjct: 294 QIRKLDL------LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ--YCKQLK 345
Query: 717 NLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVT 773
L I G E V L L + +LEY+ +T
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALA----------QGCQELEYMA-VYVSDIT 391
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 801 | |||
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.96 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.95 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.95 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.95 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.95 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.95 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.95 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.95 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.94 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.94 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.94 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.94 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.92 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.92 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.91 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.91 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.91 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.9 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.9 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.89 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.89 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.88 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.88 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.88 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.88 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.87 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.87 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.86 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.86 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.86 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.86 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.86 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.85 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.84 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.84 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.84 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.83 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.83 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.82 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.81 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.81 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.79 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.79 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.78 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.78 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.78 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.77 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.77 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.76 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.76 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.76 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.76 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.75 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.75 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.75 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.75 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.75 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.74 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.73 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.73 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.72 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.72 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.71 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.69 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.68 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.68 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.68 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.67 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.66 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.66 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.65 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.63 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.63 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.62 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.61 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.61 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.61 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.59 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.59 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.59 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.58 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.57 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.57 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.56 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.55 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.55 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.54 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.54 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.51 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.5 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.49 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.49 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.45 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.42 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.41 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.41 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.39 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.38 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.37 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.36 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.35 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.34 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.33 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.3 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.28 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.28 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.25 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.19 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.18 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.16 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.09 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.08 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.08 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.06 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.94 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.84 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.84 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.83 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.81 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.78 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.63 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.44 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.39 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.32 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.13 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.11 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.02 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.01 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.0 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.86 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.51 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.44 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.99 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.7 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.07 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.92 |
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=310.39 Aligned_cols=342 Identities=10% Similarity=0.054 Sum_probs=275.0
Q ss_pred hhhhhhhccccccccccchhhcch-----------------hhhhhc--cccCceeeecCCcccCCCChhhhccCCCCCE
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENK-----------------AKDCAM--KRGRIETLFNVSEEFPEFKYDWFSKLEKIKV 475 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~~~~~~--~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~ 475 (801)
.+..|+++++|++|+|++|+|++. +|..+. .+++|++|.+.+|.+.+..|..|.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 456799999999999999999996 888888 9999999999999999988999999999999
Q ss_pred EEcCCcc-cCCCCCCcccccchhhhHhhcCC------cCCceEeecCCCCCccCch--hhcCCCCCCEEeccCCCCCCCC
Q 045877 476 LYLGRWQ-STVDDIPHIEIESTDYLKGLKNM------KELRLLSLQGMSGIQELPS--EISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 476 L~Ls~n~-l~~~~~~~~~~~~~~lp~~l~~l------~~L~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
|+|++|+ +++ ..+|..++.+ ++|++|+|++|.+. .+|. .++++++|++|+|++|.+.+.+
T Consensus 278 L~Ls~n~~l~~----------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 278 INVACNRGISG----------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp EECTTCTTSCH----------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred EECcCCCCCcc----------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 9999998 742 1577878776 99999999998766 8998 9999999999999999888899
Q ss_pred cccccCCCCCCEEcccCCccccCCCcccCCCCc-ccccccccccCCcchhhhhhcccCcccccCCc--cCCeeEeecccc
Q 045877 547 PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK-LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLE--HLRKLTININSE 623 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~-L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~--~L~~L~L~~n~~ 623 (801)
| .++.+++|++|++++|.+. .+|..+..+++ |++|+ +++|. ...+|..+..+. +|+.|++++|.+
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~---Ls~N~-------l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLS---FAHNK-------LKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEE---CCSSC-------CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred h-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEE---ccCCc-------CcccchhhhhcccCccCEEECcCCcC
Confidence 9 8999999999999999987 88989999999 99999 88888 556777777655 899999999999
Q ss_pred cccccChhhhh-------cccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCC--------
Q 045877 624 KFQTENLSTVL-------AFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVES-------- 688 (801)
Q Consensus 624 ~~~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~-------- 688 (801)
.+.. +..+. .+.+|+.|+|++|.+.+.....+ .....++.|+...+.+..+......
T Consensus 415 ~~~~--p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~------~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 415 GSVD--GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF------STGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp TTTT--TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH------HTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred CCcc--hhhhcccccccccCCCCCEEECcCCccCcCCHHHH------ccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 8766 55566 77899999999999885432111 0123455666666655533322221
Q ss_pred --CccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccc------cccccc-----
Q 045877 689 --KLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKI------DWKGLQ----- 755 (801)
Q Consensus 689 --~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l------~~n~l~----- 755 (801)
+|+.|+|++|.+..+|..+....+++|++|+|++|.|++++. .+ ..+.+|+.|++ ++|.+.
T Consensus 487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~-----~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QP-----LNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GG-----GGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh-hh-----hcCCCCCEEECCCCcccccCcccccChH
Confidence 899999999999999987743489999999999999999654 33 24566666666 345554
Q ss_pred --CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 756 --ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 756 --~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
+.+++|+.|++++| ++..+|.. +. ++|+.||+++|++.
T Consensus 561 ~l~~l~~L~~L~Ls~N-~l~~ip~~---~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 561 GITLCPSLTQLQIGSN-DIRKVNEK---IT--PNISVLDIKDNPNI 600 (636)
T ss_dssp TGGGCSSCCEEECCSS-CCCBCCSC---CC--TTCCEEECCSCTTC
T ss_pred HHhcCCCCCEEECCCC-cCCccCHh---Hh--CcCCEEECcCCCCc
Confidence 34677888888887 56777763 33 79999999999875
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=307.06 Aligned_cols=328 Identities=13% Similarity=0.117 Sum_probs=180.8
Q ss_pred hhhhhccccCceeeecCCcccCCC-----------------Chhhhc--cCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 439 AKDCAMKRGRIETLFNVSEEFPEF-----------------KYDWFS--KLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 439 ~~~~~~~~~~L~~L~l~~n~i~~~-----------------~~~~f~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
+|..+..+++|++|.+.+|.+.+. .|..+. ++++|++|+|++|.+.+ .+|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-----------~~p 266 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-----------KLP 266 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-----------SCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-----------cCh
Confidence 445555666666666666666552 344444 66666666666665532 345
Q ss_pred HhhcCCcCCceEeecCCC-CCc-cCchhhcCC------CCCCEEeccCCCCCCCCcc--cccCCCCCCEEcccCCccccC
Q 045877 500 KGLKNMKELRLLSLQGMS-GIQ-ELPSEISYL------TSLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECFLLDG 569 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~-~~~-~lp~~i~~L------~~L~~L~Ls~n~~~~~lp~--~~~~L~~L~~L~Ls~n~l~~~ 569 (801)
..|+++++|++|+|++|. +.+ .+|..++++ ++|++|+|++|.+. .+|. .++++++|++|++++|.+.|.
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 556666666666666665 444 566655554 66666666666544 5565 566666666666666666656
Q ss_pred CCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCcc-CCeeEeecccccccccChhhhhccc--CCcEEEeec
Q 045877 570 IPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEH-LRKLTININSEKFQTENLSTVLAFK--RLLQLKVSW 646 (801)
Q Consensus 570 ~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~-L~~L~L~~n~~~~~~~~~~~l~~l~--~L~~L~L~~ 646 (801)
+| .++.+++|++|+ +++|. ...++..+..+++ |++|++++|.+... +..+..+. +|+.|++++
T Consensus 346 ip-~~~~l~~L~~L~---L~~N~-------l~~lp~~l~~l~~~L~~L~Ls~N~l~~l---p~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 346 LP-AFGSEIKLASLN---LAYNQ-------ITEIPANFCGFTEQVENLSFAHNKLKYI---PNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp CC-CCEEEEEESEEE---CCSSE-------EEECCTTSEEECTTCCEEECCSSCCSSC---CSCCCTTCSSCEEEEECCS
T ss_pred hh-hhCCCCCCCEEE---CCCCc-------cccccHhhhhhcccCcEEEccCCcCccc---chhhhhcccCccCEEECcC
Confidence 66 566666666666 55555 3345555666666 66666666665522 33333332 566666666
Q ss_pred cCCCCCCCCCCC-CCCCccchhchhhhhcccccccccccc---cCCCccEEEccCCCCCCCCcccCC------CCCCCcc
Q 045877 647 GGGSANKSTKPE-PQTGRKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEKLPSWVHP------YSFKNLK 716 (801)
Q Consensus 647 n~l~~~~~~~~~-~~~~~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~lp~~l~~------~~l~~L~ 716 (801)
|.+.+..+..+. ..........++.|+...+.+..+... ..++|+.|+|++|.+..+|..++. .++++|+
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 666655443331 001111122344444444444332211 124566666666666666655430 0112666
Q ss_pred EEEeeCCcCCCCCCCcccccceeccccccccccccccccC------cCCCCceeeccCCC------CCcccCCCCCcccc
Q 045877 717 NLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQE------LFPKLEYLEKFKCH------KVTLCPCDGYGIWE 784 (801)
Q Consensus 717 ~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~------~~p~L~~L~l~~c~------~L~~lp~~~n~i~~ 784 (801)
+|+|++|.++.++...+ ...+++|+.|++++|.+++ .+++|+.|+++++. -...+|. .+.+
T Consensus 492 ~L~Ls~N~l~~lp~~~~----~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~---~l~~ 564 (636)
T 4eco_A 492 SIDLRFNKLTKLSDDFR----ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE---GITL 564 (636)
T ss_dssp EEECCSSCCCBCCGGGS----TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT---TGGG
T ss_pred EEECcCCcCCccChhhh----hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH---HHhc
Confidence 66666666664443111 0145566677777777652 34566666664432 1222332 6678
Q ss_pred cCCcceEeCCCcccc
Q 045877 785 KSDLINLNNSKQQHR 799 (801)
Q Consensus 785 ~~~L~~LdlS~~~~~ 799 (801)
+++|+.||+++|++.
T Consensus 565 l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 565 CPSLTQLQIGSNDIR 579 (636)
T ss_dssp CSSCCEEECCSSCCC
T ss_pred CCCCCEEECCCCcCC
Confidence 899999999999874
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=312.26 Aligned_cols=312 Identities=15% Similarity=0.172 Sum_probs=163.1
Q ss_pred hhhhccCCCCCEEEcCCcccCCCCCCcccc------cchhhhHhhc--CCcCCceEeecCCCCCccCchhhcCCCCCCEE
Q 045877 464 YDWFSKLEKIKVLYLGRWQSTVDDIPHIEI------ESTDYLKGLK--NMKELRLLSLQGMSGIQELPSEISYLTSLEIL 535 (801)
Q Consensus 464 ~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~------~~~~lp~~l~--~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L 535 (801)
|..|.++++|++|+|++|.+++..++...+ ....+|..++ ++++|++|+|++|.+.+.+|..|++|++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 445666677777777777665411110000 0001455555 66666677776666666666666666666666
Q ss_pred eccCCC-CCC-CCcccccCCC-------CCCEEcccCCccccCCCc--ccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 536 DLRACY-NLD-KLPDEIGKLK-------SLTHLDISECFLLDGIPK--KLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 536 ~Ls~n~-~~~-~lp~~~~~L~-------~L~~L~Ls~n~l~~~~p~--~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
+|++|. +.+ .+|..++++. +|++|+|++|.+. .+|. .|+++++|+.|+ +++|. ...++
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~---Ls~N~-------l~~lp 589 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD---CVHNK-------VRHLE 589 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE---CTTSC-------CCBCC
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE---CCCCC-------cccch
Confidence 666665 554 5665555444 6666666666665 5666 666666666666 66665 33344
Q ss_pred ccccCCccCCeeEeecccccccccChhhhhcccC-CcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc
Q 045877 605 KDLEKLEHLRKLTININSEKFQTENLSTVLAFKR-LLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS 683 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~ 683 (801)
.|+.+++|+.|+|++|.+. .. +..+..+++ |+.|+|++|.+... +..+ .......++.|+...+.+....
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~l--p~~l~~l~~~L~~L~Ls~N~L~~l-p~~~----~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EI--PEDFCAFTDQVEGLGFSHNKLKYI-PNIF----NAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CC--CTTSCEECTTCCEEECCSSCCCSC-CSCC----CTTCSSCEEEEECCSSCTTTTS
T ss_pred -hhcCCCcceEEECcCCccc-cc--hHHHhhccccCCEEECcCCCCCcC-chhh----hccccCCCCEEECcCCcCCCcc
Confidence 6666666666666666665 22 445666666 66666666666532 2111 1111111333333333332211
Q ss_pred cccC--------CCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc----------cccee------
Q 045877 684 QHVE--------SKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE----------TVKVL------ 739 (801)
Q Consensus 684 ~~~~--------~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~----------~L~~l------ 739 (801)
+.++ .+|+.|+|++|.+..+|.+++ ..+++|+.|+|++|.|+.++...|. +|+.|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~-~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELF-ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH-HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHH-ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC
Confidence 1111 244444444444444444332 2344444444444444433332221 11111
Q ss_pred -----------cccccccccccccccc------CcCCCCceeeccCCCC------CcccCCCCCcccccCCcceEeCCCc
Q 045877 740 -----------RLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHK------VTLCPCDGYGIWEKSDLINLNNSKQ 796 (801)
Q Consensus 740 -----------~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~------L~~lp~~~n~i~~~~~L~~LdlS~~ 796 (801)
.+++|+.|++++|.++ +.+++|+.|++++++. ...+| ..+.++++|+.|||++|
T Consensus 740 L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip---~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP---TGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC---TTGGGCSSCCEEECCSS
T ss_pred CccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh---HHHhcCCCCCEEECCCC
Confidence 3455566666666655 2345566666655321 12222 26677888999999988
Q ss_pred ccc
Q 045877 797 QHR 799 (801)
Q Consensus 797 ~~~ 799 (801)
++.
T Consensus 817 ~L~ 819 (876)
T 4ecn_A 817 DIR 819 (876)
T ss_dssp CCC
T ss_pred CCC
Confidence 873
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=307.91 Aligned_cols=321 Identities=13% Similarity=0.095 Sum_probs=214.0
Q ss_pred hhhhhccccCceeeecCCcccCC-----------------CChhhhc--cCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 439 AKDCAMKRGRIETLFNVSEEFPE-----------------FKYDWFS--KLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 439 ~~~~~~~~~~L~~L~l~~n~i~~-----------------~~~~~f~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
+|..|..+++|+.|.+.+|.+.+ ..|..+. ++++|++|+|++|.+.+ .+|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-----------~iP 508 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-----------QLP 508 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-----------SCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-----------cCh
Confidence 56678888888888888888887 1344444 88888888888888753 457
Q ss_pred HhhcCCcCCceEeecCCC-CCc-cCchhhcCCC-------CCCEEeccCCCCCCCCcc--cccCCCCCCEEcccCCcccc
Q 045877 500 KGLKNMKELRLLSLQGMS-GIQ-ELPSEISYLT-------SLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECFLLD 568 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~-~~~-~lp~~i~~L~-------~L~~L~Ls~n~~~~~lp~--~~~~L~~L~~L~Ls~n~l~~ 568 (801)
..|+++++|++|+|++|. +.+ .+|..++++. +|++|+|++|.+. .+|. .++++++|++|+|++|.+.
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-
Confidence 778888888888888886 555 6787666655 8888888888666 7787 7888888888888888877
Q ss_pred CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCcc-CCeeEeecccccccccChhhhhccc--CCcEEEee
Q 045877 569 GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEH-LRKLTININSEKFQTENLSTVLAFK--RLLQLKVS 645 (801)
Q Consensus 569 ~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~-L~~L~L~~n~~~~~~~~~~~l~~l~--~L~~L~L~ 645 (801)
.+| .|+.+++|+.|+ +++|. ...++..+..+++ |+.|+|++|.+... +..+..+. +|+.|+|+
T Consensus 587 ~lp-~~~~L~~L~~L~---Ls~N~-------l~~lp~~l~~l~~~L~~L~Ls~N~L~~l---p~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLK---LDYNQ-------IEEIPEDFCAFTDQVEGLGFSHNKLKYI---PNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp BCC-CCCTTSEESEEE---CCSSC-------CSCCCTTSCEECTTCCEEECCSSCCCSC---CSCCCTTCSSCEEEEECC
T ss_pred cch-hhcCCCcceEEE---CcCCc-------cccchHHHhhccccCCEEECcCCCCCcC---chhhhccccCCCCEEECc
Confidence 777 788888888888 77777 4466777888888 88888888887733 44455443 38888888
Q ss_pred ccCCCCCCCCCCCCCCCccch------------------------hchhhhhcccccccccccccCC----------Ccc
Q 045877 646 WGGGSANKSTKPEPQTGRKDN------------------------FFIKTLTKFRTRVTERSQHVES----------KLE 691 (801)
Q Consensus 646 ~n~l~~~~~~~~~~~~~~~~~------------------------~~l~~L~~~~~~l~~~~~~~~~----------~L~ 691 (801)
+|.+.+..+... ..+..... ..++.|+...+.+..+...... +|+
T Consensus 653 ~N~l~g~ip~l~-~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 653 YNKIGSEGRNIS-CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp SSCTTTTSSSCS-SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred CCcCCCccccch-hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence 887776543211 00111111 1233333333333222111111 566
Q ss_pred EEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccc------cccc-------CcC
Q 045877 692 KLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDW------KGLQ-------ELF 758 (801)
Q Consensus 692 ~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~------n~l~-------~~~ 758 (801)
.|+|++|.+..+|..+....+++|+.|+|++|.|++++. .+ ..+++|+.|++++ |.+. +.+
T Consensus 732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~-~l-----~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT-QP-----LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC-GG-----GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccch-hh-----hcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 666666666666655432356666666666666666432 12 1445666676655 5554 346
Q ss_pred CCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 759 PKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 759 p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
++|+.|++++| ++..+|.. +. ++|+.||||+|++.
T Consensus 806 ~~L~~L~Ls~N-~L~~Ip~~---l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 806 PSLIQLQIGSN-DIRKVDEK---LT--PQLYILDIADNPNI 840 (876)
T ss_dssp SSCCEEECCSS-CCCBCCSC---CC--SSSCEEECCSCTTC
T ss_pred CCCCEEECCCC-CCCccCHh---hc--CCCCEEECCCCCCC
Confidence 67888888887 55777763 33 69999999999875
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=313.61 Aligned_cols=228 Identities=20% Similarity=0.120 Sum_probs=143.7
Q ss_pred hhhhhhccccccccccchhhcchhhhh-hccccCceeeecCCcccCCCChhhhccCC-CCCEEEcCCcccCCCCCC----
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDC-AMKRGRIETLFNVSEEFPEFKYDWFSKLE-KIKVLYLGRWQSTVDDIP---- 489 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~f~~l~-~L~~L~Ls~n~l~~~~~~---- 489 (801)
+..|..+++|++|+|++|++.+..|.. +..+++|+.|.+.+|.+.+..+..|.++. +|++|+|++|.+++...+
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 345566666666666666666444433 56666666666666666544555555554 566666666555431111
Q ss_pred -------cccccc----hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCE
Q 045877 490 -------HIEIES----TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTH 558 (801)
Q Consensus 490 -------~~~~~~----~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~ 558 (801)
.+.+.. ..+|..+.++++|++|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..++.+++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 000000 134566667777777777777666667777777777777777777666677777777777777
Q ss_pred EcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcc-cCcccccCCccCCeeEeecccccccccChhhhhccc
Q 045877 559 LDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRW-CSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFK 637 (801)
Q Consensus 559 L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~-~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~ 637 (801)
|++++|.+.+.+|..++.+++|++|+ +++|. .. ..|..++.+++|++|+|++|.+.+.. +..+..++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~---L~~N~-------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~ 538 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWIS---LSNNR-------LTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCR 538 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEE---CCSSC-------CCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCT
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEE---ccCCc-------cCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCC
Confidence 77777777777777777777777776 66665 22 45566777777777777777776655 66677777
Q ss_pred CCcEEEeeccCCCCCCCC
Q 045877 638 RLLQLKVSWGGGSANKST 655 (801)
Q Consensus 638 ~L~~L~L~~n~l~~~~~~ 655 (801)
+|+.|++++|.+.|..+.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp TCCEEECCSSEEESBCCG
T ss_pred CCCEEECCCCccCCcCCh
Confidence 777777777777665543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=312.17 Aligned_cols=222 Identities=19% Similarity=0.175 Sum_probs=108.5
Q ss_pred hccccccccccchhhcchhhhhhccc-cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCc---------
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKR-GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPH--------- 490 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~--------- 490 (801)
.+++|++|+|++|++++..|..+... ++|+.|.+.+|.+.+..+..|.++++|++|+|++|.+++. +|.
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-LPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-CCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc-CCHHHHhcCCCC
Confidence 34444444555555444444444332 4555555555555544445555555555555555544210 000
Q ss_pred --cccc----chhhhHhhcCCc-CCceEeecCCCCCccCchhhcC--CCCCCEEeccCCCCCCCCcccccCCCCCCEEcc
Q 045877 491 --IEIE----STDYLKGLKNMK-ELRLLSLQGMSGIQELPSEISY--LTSLEILDLRACYNLDKLPDEIGKLKSLTHLDI 561 (801)
Q Consensus 491 --~~~~----~~~lp~~l~~l~-~L~~L~Ls~n~~~~~lp~~i~~--L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~L 561 (801)
+.+. ...+|..+..+. +|++|+|++|.+.+.+|..++. +++|++|+|++|.+.+.+|..++++++|++|++
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 0000 012233333333 4444444444444444444433 445555555555555555555555555666666
Q ss_pred cCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcE
Q 045877 562 SECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQ 641 (801)
Q Consensus 562 s~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~ 641 (801)
++|.+.+.+|..++.+++|+.|+ +++|. + ....+..+..+++|++|++++|.+.+.. +..+.++++|+.
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~---L~~n~-----l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~ 494 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLK---LWLNM-----L-EGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNW 494 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEE---CCSSC-----C-CSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCE
T ss_pred cCCcccCcccHHHhcCCCCCEEE---CCCCc-----c-cCcCCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCCCE
Confidence 66655555555555555555555 55544 0 1134455556666666666666655544 555566666666
Q ss_pred EEeeccCCCCCCC
Q 045877 642 LKVSWGGGSANKS 654 (801)
Q Consensus 642 L~L~~n~l~~~~~ 654 (801)
|+|++|.+.+..+
T Consensus 495 L~L~~N~l~~~~p 507 (768)
T 3rgz_A 495 ISLSNNRLTGEIP 507 (768)
T ss_dssp EECCSSCCCSCCC
T ss_pred EEccCCccCCcCC
Confidence 6666666655443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=292.23 Aligned_cols=350 Identities=16% Similarity=0.121 Sum_probs=191.2
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.+++. .+..|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-----------SSSWF 94 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-----------CHHHH
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-----------CHHHh
Confidence 4566666666666666666666666666666666666666666666666666666666665421 13445
Q ss_pred cCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCc-ccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
+++++|++|+|++|.+.+ ..|..++++++|++|++++|...+.+| ..+.++++|++|++++|.+.+.+|..++.+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 666666666666654433 234556666666666666665444443 355666666666666666665555555555555
Q ss_pred cccccc---------------------cccCCcchhhhhhcccC-c-ccc----------------------------cC
Q 045877 581 QVLKGF---------------------VISDHAEDDRRWKRWCS-L-KDL----------------------------EK 609 (801)
Q Consensus 581 ~~L~~~---------------------~l~~n~~~~~~~~~~~~-~-~~l----------------------------~~ 609 (801)
++|+.. .+++|.. ..... + ... ..
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNL-----ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC-----TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCcc-----ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 544400 0333330 00000 0 000 01
Q ss_pred C-----------------------------------------------------------ccCCeeEeecccccccccCh
Q 045877 610 L-----------------------------------------------------------EHLRKLTININSEKFQTENL 630 (801)
Q Consensus 610 L-----------------------------------------------------------~~L~~L~L~~n~~~~~~~~~ 630 (801)
+ .+|+.|++++|.+... +
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i---p 326 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV---P 326 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC---C
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC---C
Confidence 1 1222233333322211 1
Q ss_pred hh-hhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc-----cccCCCccEEEccCCCCCCCC
Q 045877 631 ST-VLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS-----QHVESKLEKLDFQCFPDEKLP 704 (801)
Q Consensus 631 ~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~-----~~~~~~L~~L~L~~n~~~~lp 704 (801)
.. +.++++|+.|++++|.+.+..+... ........++.|+...+.+.... ....++|+.|+|++|.+..+|
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 403 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNS---ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHH---TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred HHHHhcCccccEEEccCCccccccccch---hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC
Confidence 22 2456666777777666654211000 00001234455555555443221 112368888888888888888
Q ss_pred cccCCCCCCCccEEEeeCCcCCCCCCCcccccceec------------ccccccccccccccc-----CcCCCCceeecc
Q 045877 705 SWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLR------------LKYLNELKIDWKGLQ-----ELFPKLEYLEKF 767 (801)
Q Consensus 705 ~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~------------L~~L~~L~l~~n~l~-----~~~p~L~~L~l~ 767 (801)
..+. .+++|++|+|++|.+++++...+++|+.++ +++|+.|++++|.++ +.+++|+.|+++
T Consensus 404 ~~~~--~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls 481 (549)
T 2z81_A 404 DSCQ--WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481 (549)
T ss_dssp SCCC--CCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECC
T ss_pred hhhc--ccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecC
Confidence 8776 788888888888888877665455555553 345566666666654 234556666666
Q ss_pred CCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 768 KCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 768 ~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
++ +++.++. ..+.++++|+.||+++|++.
T Consensus 482 ~N-~l~~~~~--~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 482 RN-QLKSVPD--GIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SS-CCCCCCT--TGGGGCTTCCEEECCSSCBC
T ss_pred CC-ccCCcCH--HHHhcCcccCEEEecCCCcc
Confidence 55 4554443 24567778888888888764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=284.50 Aligned_cols=345 Identities=15% Similarity=0.075 Sum_probs=266.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccC-CCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFP-EFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
++|++|+|++|+|+++.+..|..+++|++|.+.+|.+. .+.+..|.++++|++|+|++|.++. ..|..
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-----------LETGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-----------ECTTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-----------cChhh
Confidence 68999999999999999999999999999999999987 5667889999999999999999853 33778
Q ss_pred hcCCcCCceEeecCCCCCccCchh--hcCCCCCCEEeccCCCCCCCCccc-ccCCCCCCEEcccCCccccCCCcccCCC-
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSE--ISYLTSLEILDLRACYNLDKLPDE-IGKLKSLTHLDISECFLLDGIPKKLSLL- 577 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~--i~~L~~L~~L~Ls~n~~~~~lp~~-~~~L~~L~~L~Ls~n~l~~~~p~~~~~L- 577 (801)
|.++++|++|+|++|.+.+.+|.. ++.+++|++|+|++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 999999999999999877766655 899999999999999888877876 8999999999999999998888888776
Q ss_pred -CcccccccccccCCcchhhhhhcccCc---------ccccCCccCCeeEeecccccccccChhhhhcc---cCCcEEEe
Q 045877 578 -SKLQVLKGFVISDHAEDDRRWKRWCSL---------KDLEKLEHLRKLTININSEKFQTENLSTVLAF---KRLLQLKV 644 (801)
Q Consensus 578 -~~L~~L~~~~l~~n~~~~~~~~~~~~~---------~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l---~~L~~L~L 644 (801)
.+|+.|+ ++++. ....+ ..+..+++|++|++++|.+.+.. +..+..+ ++|+.|++
T Consensus 179 ~~~L~~L~---l~~n~-------l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 179 GKHFTLLR---LSSIT-------LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM--AKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp TCEEEEEE---CTTCB-------CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH--HHHHHHHTTTCCEEEEEC
T ss_pred cccccccc---cccCc-------ccccchhhccccccccccccceeeeEecCCCcccccc--hhhhhccccccceeeEee
Confidence 6788887 77776 22222 12446789999999999988765 5555444 78999999
Q ss_pred eccCCCCCCCCCC------CCCCCccchhchhhhhcccccccccccc---cCCCccEEEccCCCCCCCC-cccCCCCCCC
Q 045877 645 SWGGGSANKSTKP------EPQTGRKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEKLP-SWVHPYSFKN 714 (801)
Q Consensus 645 ~~n~l~~~~~~~~------~~~~~~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~lp-~~l~~~~l~~ 714 (801)
++|...+...... ...+.......++.|+...+.+....+. ..++|+.|+|++|.+..++ ..+. .+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~ 324 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTH 324 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTT
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc--Cccc
Confidence 8886654321110 0001111123455555555544433221 1368999999999887764 4555 8999
Q ss_pred ccEEEeeCCcCCCCCCCcccccceecccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCcccccCC
Q 045877 715 LKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSD 787 (801)
Q Consensus 715 L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~ 787 (801)
|++|+|++|.++++.+..| -.+.+|+.|++++|.++ +.+++|++|++.++ +++.+|. ..+..+++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~ 396 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMF-----ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD--GIFDRLTS 396 (455)
T ss_dssp CCEEECCSSCCCEECGGGG-----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTT
T ss_pred CCEEECCCCccCCcChhHh-----cCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH--hHhccCCc
Confidence 9999999999988877666 35677888888888776 45678889999886 6777665 25578899
Q ss_pred cceEeCCCccccC
Q 045877 788 LINLNNSKQQHRA 800 (801)
Q Consensus 788 L~~LdlS~~~~~~ 800 (801)
|++|++++|++..
T Consensus 397 L~~L~l~~N~l~~ 409 (455)
T 3v47_A 397 LQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSCBCC
T ss_pred ccEEEccCCCccc
Confidence 9999999999864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-29 Score=290.20 Aligned_cols=346 Identities=16% Similarity=0.091 Sum_probs=193.4
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
+..|.++++|++|+|++|+|.++.|..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++...
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-------- 121 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID-------- 121 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG--------
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC--------
Confidence 345677777777777777777777777777777777777777777777777777777777777777764321
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCC--EEcccCCccc------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLT--HLDISECFLL------ 567 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~--~L~Ls~n~l~------ 567 (801)
+..+.++++|++|+|++|.+.+.....+..+++|++|+|++|.+.+..|..++.+++|+ .|++++|.+.
T Consensus 122 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 122 ---FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp ---GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred ---cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 23355555555555555544332212233355555555555544444444445555444 4444444433
Q ss_pred ---------------------------------------------------------------------cCCCcccCCCC
Q 045877 568 ---------------------------------------------------------------------DGIPKKLSLLS 578 (801)
Q Consensus 568 ---------------------------------------------------------------------~~~p~~~~~L~ 578 (801)
+..+..|+.++
T Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 33333355566
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPE 658 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 658 (801)
+|++|+ +++|. ...+|..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+....
T Consensus 279 ~L~~L~---l~~n~-------l~~lp~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 279 GLQELD---LTATH-------LSELPSGLVGLSTLKKLVLSANKFENLC--QISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp TCSEEE---CTTSC-------CSCCCSSCCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CCCEEe---ccCCc-------cCCCChhhcccccCCEEECccCCcCcCc--hhhhhccCcCCEEECCCCCcccccchhhh
Confidence 666666 66665 4455666777777777777777766554 45566667777777776665543322110
Q ss_pred CCCCccchhchhhhhcccccccccc------ccc-----------------------CCCccEEEccCCCCCCCC--ccc
Q 045877 659 PQTGRKDNFFIKTLTKFRTRVTERS------QHV-----------------------ESKLEKLDFQCFPDEKLP--SWV 707 (801)
Q Consensus 659 ~~~~~~~~~~l~~L~~~~~~l~~~~------~~~-----------------------~~~L~~L~L~~n~~~~lp--~~l 707 (801)
. ....++.|+...+.+.... ..+ .++|+.|++++|.+...+ .++
T Consensus 347 ~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 347 E-----NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp T-----TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred h-----ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 0 1122222222222221110 111 134444444444433221 112
Q ss_pred CCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc----------CcCCCCceeeccCCCCCcccCC
Q 045877 708 HPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ----------ELFPKLEYLEKFKCHKVTLCPC 777 (801)
Q Consensus 708 ~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~----------~~~p~L~~L~l~~c~~L~~lp~ 777 (801)
. .+++|++|+|++|.+.+..+..| ..+++|+.|++++|.+. +.+++|+.|++.+| +++.++.
T Consensus 422 ~--~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 493 (606)
T 3t6q_A 422 Q--NLHLLKVLNLSHSLLDISSEQLF-----DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ 493 (606)
T ss_dssp T--TCTTCCEEECTTCCCBTTCTTTT-----TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT
T ss_pred h--CcccCCEEECCCCccCCcCHHHH-----hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh
Confidence 2 45555555555555544444333 23455666666666553 23566777777776 4555432
Q ss_pred CCCcccccCCcceEeCCCcccc
Q 045877 778 DGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 778 ~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+.++++|+.||+++|++.
T Consensus 494 --~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 494 --HAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp --TTTTTCTTCCEEECCSSCCC
T ss_pred --hhhccccCCCEEECCCCccC
Confidence 36678899999999999875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=289.47 Aligned_cols=342 Identities=18% Similarity=0.103 Sum_probs=226.8
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
..|.++++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++...
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--------- 120 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE--------- 120 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS---------
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc---------
Confidence 35667777777777777777777777777777777777777777776777777777777777777764321
Q ss_pred hhhHhhcCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCccc--------------------------
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDE-------------------------- 549 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~-------------------------- 549 (801)
+..++++++|++|+|++|.+.+ .+|..++++++|++|+|++|.+.+..|..
T Consensus 121 --~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 121 --SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp --SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred --ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence 1234455555555555544332 34455555555555555554433322221
Q ss_pred --------------------------------------------------------------------------------
Q 045877 550 -------------------------------------------------------------------------------- 549 (801)
Q Consensus 550 -------------------------------------------------------------------------------- 549 (801)
T Consensus 199 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG
T ss_pred ccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc
Confidence
Q ss_pred ------------------------ccCCCCCCEEcccCCccccCCCc--------------------ccCCCCccccccc
Q 045877 550 ------------------------IGKLKSLTHLDISECFLLDGIPK--------------------KLSLLSKLQVLKG 585 (801)
Q Consensus 550 ------------------------~~~L~~L~~L~Ls~n~l~~~~p~--------------------~~~~L~~L~~L~~ 585 (801)
+..+++|++|++++|.+ +.+|. .++.+++|++|+
T Consensus 279 ~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~- 356 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD- 356 (606)
T ss_dssp GSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEE-
T ss_pred cccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEE-
Confidence 22223344444444433 22321 244566677777
Q ss_pred ccccCCcchhhhhhcccC---cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCC
Q 045877 586 FVISDHAEDDRRWKRWCS---LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~---~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 662 (801)
+++|. .... +..+..+++|++|++++|.+... +..+..+++|+.|++++|.+.+..+....
T Consensus 357 --ls~n~-------l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---- 420 (606)
T 3vq2_A 357 --LSRNA-------LSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHSTLKRVTEFSAF---- 420 (606)
T ss_dssp --CCSSC-------EEEEEECCHHHHCCSCCCEEECCSCSEEEE---CCCCTTCTTCCEEECTTSEEESTTTTTTT----
T ss_pred --CcCCc-------cCCCcchhhhhccCCcccEeECCCCccccc---hhhccCCCCCCeeECCCCccCCccChhhh----
Confidence 77776 2222 56788899999999999987764 46788899999999999988776542110
Q ss_pred ccchhchhhhhcccccccccccc---cCCCccEEEccCCCCCC--CCcccCCCCCCCccEEEeeCCcCCCCCCCcccccc
Q 045877 663 RKDNFFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEK--LPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVK 737 (801)
Q Consensus 663 ~~~~~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~--lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~ 737 (801)
.....++.|+...+.+....+. -.++|+.|+|++|.+.. +|..+. .+++|++|+|++|.++++++..|
T Consensus 421 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~---- 493 (606)
T 3vq2_A 421 -LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA--NTTNLTFLDLSKCQLEQISWGVF---- 493 (606)
T ss_dssp -TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTSCCCEECTTTT----
T ss_pred -hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc--cCCCCCEEECCCCcCCccChhhh----
Confidence 1234455555555544432221 13789999999998765 677776 99999999999999999887766
Q ss_pred eecccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCcccccC-CcceEeCCCcccc
Q 045877 738 VLRLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKS-DLINLNNSKQQHR 799 (801)
Q Consensus 738 ~l~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~-~L~~LdlS~~~~~ 799 (801)
-.+.+|+.|++++|.++ +.+++|+.|++++| +++.+|. .+..++ +|++|++++|.+.
T Consensus 494 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~---~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 494 -DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKG---ILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp -TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEES---CGGGSCTTCCEEECCSCCCC
T ss_pred -cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCH---hHhhhcccCcEEEccCCCcc
Confidence 35677888888888876 44678999999988 5888887 477776 6999999999876
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=281.93 Aligned_cols=359 Identities=16% Similarity=0.157 Sum_probs=223.2
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCc-----
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPH----- 490 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~----- 490 (801)
+..|.++++|++|+|++|++.+..|..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++...+|.
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 153 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT
T ss_pred hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCc
Confidence 456788888888888888888888888888888888888888888877777888888888888888886543321
Q ss_pred ----ccccc----hhhhHhhcCCcCCc--eEeecCCCCCccCchh-----------------------------------
Q 045877 491 ----IEIES----TDYLKGLKNMKELR--LLSLQGMSGIQELPSE----------------------------------- 525 (801)
Q Consensus 491 ----~~~~~----~~lp~~l~~l~~L~--~L~Ls~n~~~~~lp~~----------------------------------- 525 (801)
+.+.. ...+..+..+.+|+ .|++++|.+.+..|..
T Consensus 154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence 11111 11245566666666 5666665443322221
Q ss_pred ----------------------------------------hcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCc
Q 045877 526 ----------------------------------------ISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 526 ----------------------------------------i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
|+.+++|++|+|++|.+ ..+|..+..+++|++|++++|.
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CCCChhhcccccCCEEECccCC
Confidence 33344455555555432 2444445555555555555555
Q ss_pred cccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEee
Q 045877 566 LLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVS 645 (801)
Q Consensus 566 l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~ 645 (801)
+.+..|..+..+++|++|+ +++|. +........+..+++|++|++++|.+......+..+..+++|+.|+++
T Consensus 313 l~~~~~~~~~~l~~L~~L~---l~~n~-----~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLS---IKGNT-----KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEE---CCSCS-----SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred cCcCchhhhhccCcCCEEE---CCCCC-----cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence 4444444455555555554 44443 000111223566666666666666665443223456667777777777
Q ss_pred ccCCCCCCCCCCCCCCCccchhchhhhhccccccccccc----ccCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEe
Q 045877 646 WGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQ----HVESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYI 720 (801)
Q Consensus 646 ~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~----~~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L 720 (801)
+|.+.+..+..+ .....++.|+...+.+....+ .-.++|+.|++++|.+... |.++. .+++|++|+|
T Consensus 385 ~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L 456 (606)
T 3t6q_A 385 YNEPLSLKTEAF------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNL 456 (606)
T ss_dssp SCSCEEECTTTT------TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT--TCTTCCEEEC
T ss_pred CCcCCcCCHHHh------cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh--CCCCCCEEEC
Confidence 776655443322 112345555555555443321 1237999999999988765 45555 8999999999
Q ss_pred eCCcCCCCCC---Ccccccceecccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCcccccCCcce
Q 045877 721 RGGRLNSLEG---SEWETVKVLRLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLIN 790 (801)
Q Consensus 721 ~~n~l~~~~~---~~f~~L~~l~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~ 790 (801)
++|.+++... ..+ ..+.+|+.|++++|.++ +.+++|++|+++++ +++.++. ..+.+++.| +
T Consensus 457 ~~n~l~~~~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~l~~l~~L-~ 527 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSL-----QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSI--EALSHLKGI-Y 527 (606)
T ss_dssp TTCBCGGGEECSSCGG-----GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGG--GGGTTCCSC-E
T ss_pred CCCCCCccccccchhh-----ccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCCh--hHhCccccc-E
Confidence 9999876321 223 35677788888888776 34677888888877 4554432 366788999 9
Q ss_pred EeCCCccccC
Q 045877 791 LNNSKQQHRA 800 (801)
Q Consensus 791 LdlS~~~~~~ 800 (801)
||+++|++.+
T Consensus 528 L~L~~N~l~~ 537 (606)
T 3t6q_A 528 LNLASNHISI 537 (606)
T ss_dssp EECCSSCCCC
T ss_pred EECcCCcccc
Confidence 9999998863
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-28 Score=276.80 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=104.0
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|+++ .+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV------------KISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC------------EEECC-
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee------------ecCcc-
Confidence 67888888888888888888888888888888888888887888888888888888888874 33333
Q ss_pred cCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC--CEEcccCCcc--ccCCCcccCC
Q 045877 503 KNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL--THLDISECFL--LDGIPKKLSL 576 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L--~~L~Ls~n~l--~~~~p~~~~~ 576 (801)
.+++|++|+|++|.+.+ .+|..++++++|++|+|++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc
Confidence 67888888888876655 467788888888888888876554 346666777 8888888777 5555555544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=278.22 Aligned_cols=339 Identities=13% Similarity=0.005 Sum_probs=222.7
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|+.|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++ .+|..
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ------------NISCC- 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC------------EECSC-
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC------------ccCcc-
Confidence 67888999999999888888888999999999999998888888999999999999999884 33444
Q ss_pred cCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC--CEEcccCCcc--ccCCCcccCCC
Q 045877 503 KNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL--THLDISECFL--LDGIPKKLSLL 577 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L--~~L~Ls~n~l--~~~~p~~~~~L 577 (801)
.+++|++|+|++|.+.+ .+|..|+++++|++|+|++|.+.+. .+..+++| ++|++++|.+ .+..|..+..+
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccccccc
Confidence 78889999999886554 3457888899999999998876543 34555555 8888888887 66666555443
Q ss_pred --------------------------CcccccccccccCCcchhhhhh--------------------------cccCcc
Q 045877 578 --------------------------SKLQVLKGFVISDHAEDDRRWK--------------------------RWCSLK 605 (801)
Q Consensus 578 --------------------------~~L~~L~~~~l~~n~~~~~~~~--------------------------~~~~~~ 605 (801)
++|+.|+ ++.|......+. ....+.
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~---l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN---IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE---EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEec---ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 2344433 333310000000 000000
Q ss_pred cccCCccCCeeEeecccccccccC---------------------------------------------------hhhhh
Q 045877 606 DLEKLEHLRKLTININSEKFQTEN---------------------------------------------------LSTVL 634 (801)
Q Consensus 606 ~l~~L~~L~~L~L~~n~~~~~~~~---------------------------------------------------~~~l~ 634 (801)
.....+|++|++++|.+.+.... .....
T Consensus 272 -~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 272 -FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp -HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred -hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 00011334444444433321100 00015
Q ss_pred cccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc-----cccCCCccEEEccCCCCCC-CCcccC
Q 045877 635 AFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS-----QHVESKLEKLDFQCFPDEK-LPSWVH 708 (801)
Q Consensus 635 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~-----~~~~~~L~~L~L~~n~~~~-lp~~l~ 708 (801)
.+++|++|++++|.+.+..+..+ .....++.|+...+.+.... ..-.++|+.|+|++|.+.. +|...+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGC------STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC------CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred CCCCceEEECCCCccccchhhhh------cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 67788888888888877544332 11234555555555444321 1113688999999888876 776543
Q ss_pred CCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc------CcCCCCceeeccCCCCCcccCCCCCcc
Q 045877 709 PYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHKVTLCPCDGYGI 782 (801)
Q Consensus 709 ~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~L~~lp~~~n~i 782 (801)
..+++|++|+|++|.+++..+..++ .+|+.|++++|.++ ..+++|++|++.++ +++.+|.. .+
T Consensus 425 -~~l~~L~~L~l~~n~l~~~~~~~l~-------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~--~~ 493 (562)
T 3a79_B 425 -AWAESILVLNLSSNMLTGSVFRCLP-------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDG--VF 493 (562)
T ss_dssp -CCCTTCCEEECCSSCCCGGGGSSCC-------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT--ST
T ss_pred -cCcccCCEEECCCCCCCcchhhhhc-------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHH--HH
Confidence 4788999999999988776554442 45666666777665 35678899999886 68877763 47
Q ss_pred cccCCcceEeCCCcccc
Q 045877 783 WEKSDLINLNNSKQQHR 799 (801)
Q Consensus 783 ~~~~~L~~LdlS~~~~~ 799 (801)
..+++|+.||+++|.+.
T Consensus 494 ~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCTTCCCEECCSCCBC
T ss_pred hcCCCCCEEEecCCCcC
Confidence 78899999999999875
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=272.45 Aligned_cols=277 Identities=18% Similarity=0.127 Sum_probs=170.5
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++++.|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++... +..|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~ 100 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-----------LGVF 100 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-----------TTSS
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-----------cccc
Confidence 35667777777777777777777777777777777777666667777777777777777664211 2345
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 66777777777776665556666677777777777777666666666777777777777777666544455666667766
Q ss_pred cccccccCCcchhhhhhccc-CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQT 661 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~-~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 661 (801)
|+ +++|. ... .+..|..+++|+.|++++|...... +..+....+|+.|++++|.+.+...
T Consensus 181 L~---l~~n~-------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~------- 241 (477)
T 2id5_A 181 LR---LRHLN-------INAIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLYGLNLTSLSITHCNLTAVPY------- 241 (477)
T ss_dssp EE---EESCC-------CCEECTTCSCSCTTCCEEEEECCTTCCEE--CTTTTTTCCCSEEEEESSCCCSCCH-------
T ss_pred Ee---CCCCc-------CcEeChhhcccCcccceeeCCCCcccccc--CcccccCccccEEECcCCcccccCH-------
Confidence 66 55555 222 2235666667777777766554443 3333334466777777666653221
Q ss_pred CccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecc
Q 045877 662 GRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRL 741 (801)
Q Consensus 662 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L 741 (801)
..... .++|+.|+|++|.+..++...+ ..+++|++|+|++|.++++.+..| ..+
T Consensus 242 -------------------~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-----~~l 295 (477)
T 2id5_A 242 -------------------LAVRH-LVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLAVVEPYAF-----RGL 295 (477)
T ss_dssp -------------------HHHTT-CTTCCEEECCSSCCCEECTTSC-TTCTTCCEEECCSSCCSEECTTTB-----TTC
T ss_pred -------------------HHhcC-ccccCeeECCCCcCCccChhhc-cccccCCEEECCCCccceECHHHh-----cCc
Confidence 00111 2567777777766666554432 366777777777777666665555 234
Q ss_pred cccccccccccccc
Q 045877 742 KYLNELKIDWKGLQ 755 (801)
Q Consensus 742 ~~L~~L~l~~n~l~ 755 (801)
.+|+.|++++|.++
T Consensus 296 ~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 296 NYLRVLNVSGNQLT 309 (477)
T ss_dssp TTCCEEECCSSCCS
T ss_pred ccCCEEECCCCcCc
Confidence 55555666655554
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=289.45 Aligned_cols=315 Identities=16% Similarity=0.093 Sum_probs=185.5
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCccc-CCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEF-PEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i-~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.++|++|+|++|+|+++.+..|..+++|++|.+.+|.+ ..+.+..|.++++|++|+|++|.++. ..|.
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-----------~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-----------LHPD 91 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-----------ECTT
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-----------cCHh
Confidence 35677777777777777777777777777777777633 34446677777777777777777642 2356
Q ss_pred hhcCCcCCceEeecCCCCCccCchh--hcCCCCCCEEeccCCCCCCCCc-ccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSE--ISYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~--i~~L~~L~~L~Ls~n~~~~~lp-~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
.|.++++|++|+|++|.+.+.+|.. +++|++|++|+|++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 6777777777777777666555544 6777777777777776655443 457777777777777777766666666655
Q ss_pred --CcccccccccccCCcchhhhhhcccCcccccCCcc------CCeeEeecccccccccC--------------------
Q 045877 578 --SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEH------LRKLTININSEKFQTEN-------------------- 629 (801)
Q Consensus 578 --~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~------L~~L~L~~n~~~~~~~~-------------------- 629 (801)
++|+.|+ ++.|. + ....+..++.+.+ |+.|++++|.+......
T Consensus 172 ~~~~L~~L~---L~~n~-----l-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 172 QGKTLSFFS---LAANS-----L-YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp HHCSSCCCE---ECCSB-----S-CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred cCCccceEE---CCCCc-----c-ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 5666666 55554 1 1112233333333 66666666644322200
Q ss_pred --------------hhhhhcc--cCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccc---ccCCCc
Q 045877 630 --------------LSTVLAF--KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQ---HVESKL 690 (801)
Q Consensus 630 --------------~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~---~~~~~L 690 (801)
...|.++ ++|+.|++++|.+.+..+..+ .....++.|+...+.+....+ ...++|
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF------ETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS------SSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh------hcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 0111111 456666666665554433222 012234444444443332211 112577
Q ss_pred cEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc--CcCCCCceeecc
Q 045877 691 EKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ--ELFPKLEYLEKF 767 (801)
Q Consensus 691 ~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~--~~~p~L~~L~l~ 767 (801)
+.|+|++|.+..+ |..+. .+++|++|+|++|.+.++++..| -.+.+|+.|++++|.++ ..+++|+.|.+.
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~ 389 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFY--GLPKVAYIDLQKNHIAIIQDQTF-----KFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389 (844)
T ss_dssp CEEEEESCCCSCCCSCSCS--SCTTCCEEECCSCCCCCCCSSCS-----CSCCCCCEEEEETCCSCCCSSCCSCSEEEEE
T ss_pred CEEECCCCCCCccCHHHhc--CCCCCCEEECCCCCCCccChhhh-----cCCCCCCEEECCCCCCCcccCCCCcchhccC
Confidence 7777777776655 34444 77777777777777777766555 34556666666666665 345566666665
Q ss_pred CC
Q 045877 768 KC 769 (801)
Q Consensus 768 ~c 769 (801)
++
T Consensus 390 ~N 391 (844)
T 3j0a_A 390 GN 391 (844)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=286.77 Aligned_cols=261 Identities=16% Similarity=0.075 Sum_probs=131.4
Q ss_pred hhhhccccccccccchhhcc-hhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 418 EFEKIKKLFNFSLSLEEIEN-KAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
.|..+++|++|+|++|.+.+ +.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.+++.
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---------- 112 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA---------- 112 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC----------
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc----------
Confidence 45555566666666553332 2355555566666666666666555555566666666666666655321
Q ss_pred hhhH--hhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCC--CCCCEEcccCCccccCCC
Q 045877 497 DYLK--GLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKL--KSLTHLDISECFLLDGIP 571 (801)
Q Consensus 497 ~lp~--~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L--~~L~~L~Ls~n~l~~~~p 571 (801)
++. .|.++++|++|+|++|.+.+..+ ..|++|++|++|+|++|.+.+..+..+..+ ++|++|++++|.+.+..|
T Consensus 113 -~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 113 -VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp -CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred -cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 122 24555555555555554443322 345555555555555555555445444444 444444444444444444
Q ss_pred cccCCCCc------ccccccc-----------------------------------------------------------
Q 045877 572 KKLSLLSK------LQVLKGF----------------------------------------------------------- 586 (801)
Q Consensus 572 ~~~~~L~~------L~~L~~~----------------------------------------------------------- 586 (801)
..++.+.+ |+.|+..
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 33333332 3333300
Q ss_pred cccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccch
Q 045877 587 VISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDN 666 (801)
Q Consensus 587 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 666 (801)
.+++|. + ....+..|..+++|+.|+|++|.+.... +..|.++++|+.|+|++|.+.+..+..+ ...
T Consensus 272 ~Ls~n~-----l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~l 337 (844)
T 3j0a_A 272 DLSHGF-----V-FSLNSRVFETLKDLKVLNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLLGELYSSNF------YGL 337 (844)
T ss_dssp ECTTCC-----C-CEECSCCSSSCCCCCEEEEESCCCCEEC--TTTTTTCSSCCEEEEESCCCSCCCSCSC------SSC
T ss_pred ECCCCc-----c-cccChhhhhcCCCCCEEECCCCcCCCCC--hHHhcCCCCCCEEECCCCCCCccCHHHh------cCC
Confidence 033333 0 0112344566666677777766666554 4566666677777777776665443322 112
Q ss_pred hchhhhhcccccccccccc---cCCCccEEEccCCCCCCC
Q 045877 667 FFIKTLTKFRTRVTERSQH---VESKLEKLDFQCFPDEKL 703 (801)
Q Consensus 667 ~~l~~L~~~~~~l~~~~~~---~~~~L~~L~L~~n~~~~l 703 (801)
..++.|+...+.+....+. ..++|+.|+|++|.+..+
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 2344444444433322211 125666666666665543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=280.79 Aligned_cols=148 Identities=20% Similarity=0.144 Sum_probs=120.3
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|..+++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.++...
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-------- 116 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-------- 116 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST--------
T ss_pred hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC--------
Confidence 346888999999999999999998999999999999999999999888889999999999999999885421
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCC----CEEcccCCccccCC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSL----THLDISECFLLDGI 570 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L----~~L~Ls~n~l~~~~ 570 (801)
+..++++++|++|+|++|.+.+ .+|..|+++++|++|++++|.+.+..+..++.+++| ++|++++|.+.+..
T Consensus 117 ---~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 117 ---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp ---TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred ---CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence 1247888999999999886655 478889999999999999987777667777777777 77777777766544
Q ss_pred Cccc
Q 045877 571 PKKL 574 (801)
Q Consensus 571 p~~~ 574 (801)
|..+
T Consensus 194 ~~~~ 197 (570)
T 2z63_A 194 PGAF 197 (570)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 4433
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=251.88 Aligned_cols=303 Identities=21% Similarity=0.193 Sum_probs=245.8
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+..+++|+.|++++|.+..+. .+..+++|++|.+.+|.+..+++ |.++++|++|+|++|.++.
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~---------- 102 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD---------- 102 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------
T ss_pred cccchhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC----------
Confidence 355678999999999999998764 37789999999999999998766 9999999999999998843
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
+ ..+..+++|++|+|++|.+ ..++. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +.
T Consensus 103 --~-~~~~~l~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~ 174 (347)
T 4fmz_A 103 --I-SALQNLTNLRELYLNEDNI-SDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IA 174 (347)
T ss_dssp --C-GGGTTCTTCSEEECTTSCC-CCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred --c-hHHcCCCcCCEEECcCCcc-cCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hc
Confidence 2 3589999999999999854 45555 89999999999999977766654 8999999999999999765443 88
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+++|++|+ +++|. ....+ .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+
T Consensus 175 ~l~~L~~L~---l~~n~-------l~~~~-~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 175 NLTDLYSLS---LNYNQ-------IEDIS-PLASLTSLHYFTAYVNQITDIT----PVANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp GCTTCSEEE---CTTSC-------CCCCG-GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCCCCEEE---ccCCc-------ccccc-cccCCCccceeecccCCCCCCc----hhhcCCcCCEEEccCCccCCCcc-
Confidence 899999998 88887 33333 3889999999999999887654 28899999999999998875321
Q ss_pred CCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccc
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWET 735 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~ 735 (801)
... .++|+.|++++|.+..++ .+. .+++|++|++++|.+++++. +
T Consensus 239 ---------------------------~~~-l~~L~~L~l~~n~l~~~~-~~~--~l~~L~~L~l~~n~l~~~~~--~-- 283 (347)
T 4fmz_A 239 ---------------------------LAN-LSQLTWLEIGTNQISDIN-AVK--DLTKLKMLNVGSNQISDISV--L-- 283 (347)
T ss_dssp ---------------------------GTT-CTTCCEEECCSSCCCCCG-GGT--TCTTCCEEECCSSCCCCCGG--G--
T ss_pred ---------------------------hhc-CCCCCEEECCCCccCCCh-hHh--cCCCcCEEEccCCccCCChh--h--
Confidence 112 379999999999988875 444 89999999999999988732 3
Q ss_pred cceecccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 736 VKVLRLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 736 L~~l~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+++|+.|++++|.+. +.+++|++|++.+|+ ++.++. +..+++|++||+++|+++
T Consensus 284 ---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 ---NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG----GGGCTTCSEESSSCC---
T ss_pred ---cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC----hhhhhccceeehhhhccc
Confidence 34667777788777765 457899999999985 665543 678999999999999986
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=277.65 Aligned_cols=284 Identities=16% Similarity=0.076 Sum_probs=198.1
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|.++++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.++...
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-------- 113 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK-------- 113 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--------
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC--------
Confidence 345888899999999999999998888989999999999999998888888999999999999999885321
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc--CCCCCCEEcccCCccccCCCcc
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG--KLKSLTHLDISECFLLDGIPKK 573 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~--~L~~L~~L~Ls~n~l~~~~p~~ 573 (801)
+..|+++++|++|+|++|.+.+..|..++++++|++|+|++|.+.+..+..+. .+++|++|++++|.+.+..|..
T Consensus 114 ---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 114 ---NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp ---SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred ---hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 45688899999999999887777778888899999999999877776666554 4588999999999888877777
Q ss_pred cCCCCccccccc------------------------ccccCCcchhhhhhcccCcccccCCcc--CCeeEeecccccccc
Q 045877 574 LSLLSKLQVLKG------------------------FVISDHAEDDRRWKRWCSLKDLEKLEH--LRKLTININSEKFQT 627 (801)
Q Consensus 574 ~~~L~~L~~L~~------------------------~~l~~n~~~~~~~~~~~~~~~l~~L~~--L~~L~L~~n~~~~~~ 627 (801)
+..+.+|+.|+. ..+++|. + ....+..+..++. |+.|++++|.+....
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-----l-~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-----L-STTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-----C-CEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-----c-cccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 777666655541 0033332 0 1112345555554 888888888777665
Q ss_pred cChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccc---------cccc---cccccCCCccEEEc
Q 045877 628 ENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRT---------RVTE---RSQHVESKLEKLDF 695 (801)
Q Consensus 628 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~---------~l~~---~~~~~~~~L~~L~L 695 (801)
+..|..+++|+.|++++|.+.+..+..+. ....++.|+...+ .++. ......++|+.|++
T Consensus 265 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 265 --NDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp --TTTTTTCTTCCEEECCSCCBSEECTTTTT------TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred --cccccCcccccEeeCCCCccCccChhhhc------CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 56677788888888888877765443320 1122222222211 1111 11112367888888
Q ss_pred cCCCCCCCCcccCCCCCCCccEEEeeCCcC
Q 045877 696 QCFPDEKLPSWVHPYSFKNLKNLYIRGGRL 725 (801)
Q Consensus 696 ~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l 725 (801)
++|.+..++...+ ..+++|++|+|++|.+
T Consensus 337 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 337 EDNDIPGIKSNMF-TGLINLKYLSLSNSFT 365 (680)
T ss_dssp CSCCBCCCCTTTT-TTCTTCCEEECTTCBS
T ss_pred CCCccCCCChhHh-ccccCCcEEECCCCch
Confidence 8877766654432 3777777777777753
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=260.55 Aligned_cols=302 Identities=19% Similarity=0.116 Sum_probs=233.3
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.+.++++|++++|.+..+++..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.++.. .+.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----------PPH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----------CTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-----------CHH
Confidence 568899999999999999888899999999999999999998888999999999999999998542 256
Q ss_pred hhcCCcCCceEeecCCCCCccCchh-hcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~ 579 (801)
.|.++++|++|+|++|.+. .+|.. ++++++|++|+|++|.+.+..|..+..+++|++|++++|.+.+. .++.+++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred HhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccc
Confidence 6889999999999998554 56654 68899999999999988777778899999999999999987754 3566778
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
|+.|+ ++.|. ...+....+|+.|++++|.+..... ...++|+.|++++|.+.+..
T Consensus 188 L~~L~---l~~n~-----------l~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~~------ 242 (390)
T 3o6n_A 188 LFHAN---VSYNL-----------LSTLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTA------ 242 (390)
T ss_dssp CSEEE---CCSSC-----------CSEEECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCCG------
T ss_pred cceee---ccccc-----------ccccCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcccH------
Confidence 88887 77766 2334556688999999998876531 22468999999998877531
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCcccccce
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKV 738 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~ 738 (801)
.... .++|+.|+|++|.+..+ |..+. .+++|++|+|++|.+++++...
T Consensus 243 ----------------------~l~~-l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~------ 291 (390)
T 3o6n_A 243 ----------------------WLLN-YPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNLYG------ 291 (390)
T ss_dssp ----------------------GGGG-CTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECCSSCCCEEECSS------
T ss_pred ----------------------HHcC-CCCccEEECCCCcCCCcChhHcc--ccccCCEEECCCCcCcccCccc------
Confidence 0111 36888888888877765 55555 7888888888888887765421
Q ss_pred ecccccccccccccccc------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 739 LRLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 739 l~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+++|+.|++++|.+. +.+++|++|++.++ +++.++ +..+++|+.|++++|++.
T Consensus 292 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~-----~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK-----LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC-----CCTTCCCSEEECCSSCEE
T ss_pred CCCCCCCEEECCCCcceecCccccccCcCCEEECCCC-ccceeC-----chhhccCCEEEcCCCCcc
Confidence 23556666666666654 34678888888887 466654 456788999999998875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=275.25 Aligned_cols=347 Identities=14% Similarity=0.053 Sum_probs=245.1
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
+++++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++.. .|..|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-----------~p~~~ 100 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-----------SPGSF 100 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-----------CTTSS
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-----------Chhhc
Confidence 6899999999999999999999999999999999999999999999999999999999998542 37889
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
+++++|++|+|++|.+.+..+..++++++|++|+|++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+.+|+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 999999999999997766666889999999999999998775 6799999999999999999999988888888888776
Q ss_pred ----ccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 582 ----VLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 582 ----~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
+|+ +++|. ....+.......+|+.|++++|.+.+.. .+..+.++++|+.+++..+.+.+......
T Consensus 181 ~~l~~L~---l~~n~-------l~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 181 QVNLSLD---MSLNP-------IDFIQDQAFQGIKLHELTLRGNFNSSNI-MKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TCCCEEE---CTTCC-------CCEECTTTTTTCEEEEEEEESCCSCHHH-HHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccceee---ccCCC-------cceeCcccccCceeeeeeccCCccchhH-HHHHhccccccccccccccccccCCcccc
Confidence 566 77877 4445555455558999999999876322 16778999999999998776554321110
Q ss_pred CCCCCccchhchhh-----hhc-----ccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCC
Q 045877 658 EPQTGRKDNFFIKT-----LTK-----FRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNS 727 (801)
Q Consensus 658 ~~~~~~~~~~~l~~-----L~~-----~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~ 727 (801)
+.......+.. +.. +...++. ... .++|+.|++++|.+..+| ++. .+++|++|++++|.+..
T Consensus 250 ---~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~l~~ 321 (606)
T 3vq2_A 250 ---FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHC-LANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQLKQ 321 (606)
T ss_dssp ---CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGG-GTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCCCSS
T ss_pred ---cChHHhhhhhhccHhheeccccccccccccc-ccc-CCCCCEEEecCccchhhh-hcc--ccccCCEEEcccccCcc
Confidence 00000111111 111 0111111 111 256777777777776666 444 67777777777777655
Q ss_pred CCCCcccccceec--------------ccccccccccccccc---------CcCCCCceeeccCC------------CCC
Q 045877 728 LEGSEWETVKVLR--------------LKYLNELKIDWKGLQ---------ELFPKLEYLEKFKC------------HKV 772 (801)
Q Consensus 728 ~~~~~f~~L~~l~--------------L~~L~~L~l~~n~l~---------~~~p~L~~L~l~~c------------~~L 772 (801)
++.-.+++|+.++ +++|+.|++++|.++ +.+++|++|++.+| ++|
T Consensus 322 lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L 401 (606)
T 3vq2_A 322 FPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401 (606)
T ss_dssp CCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTC
T ss_pred cccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCC
Confidence 5433344444443 345566666666654 24566777766554 333
Q ss_pred cccCCCCC---------cccccCCcceEeCCCcccc
Q 045877 773 TLCPCDGY---------GIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 773 ~~lp~~~n---------~i~~~~~L~~LdlS~~~~~ 799 (801)
+.+.+.+| .+.++++|++|++++|++.
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 33333333 2334566666666666543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=270.33 Aligned_cols=286 Identities=17% Similarity=0.108 Sum_probs=226.4
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|..+++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.++.
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---------- 118 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI---------- 118 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE----------
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc----------
Confidence 4578888999999999999999888889899999999999999988888888999999999999998853
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
..+..|..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..+.++++|++|++++|.+.+..+..|.
T Consensus 119 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 119 -LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp -ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred -CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 2356788889999999999877777777888999999999999877666666788899999999999988877777888
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+++|+.|+ ++++. .....+..+....+|+.|+|++|.+.... ...+..+++|+.|+|++|.+.+....
T Consensus 198 ~l~~L~~L~---l~~~~------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 198 RLYRLKVLE---ISHWP------YLDTMTPNCLYGLNLTSLSITHCNLTAVP--YLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp SCTTCCEEE---EECCT------TCCEECTTTTTTCCCSEEEEESSCCCSCC--HHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcccceee---CCCCc------cccccCcccccCccccEEECcCCcccccC--HHHhcCccccCeeECCCCcCCccChh
Confidence 888999888 66654 12233444555568999999999887654 56788889999999999887754332
Q ss_pred CCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
.+ .. .++|+.|+|++|.+..+ |..+. .+++|++|+|++|.|+++++..|
T Consensus 267 ~~--------------------------~~-l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~- 316 (477)
T 2id5_A 267 ML--------------------------HE-LLRLQEIQLVGGQLAVVEPYAFR--GLNYLRVLNVSGNQLTTLEESVF- 316 (477)
T ss_dssp SC--------------------------TT-CTTCCEEECCSSCCSEECTTTBT--TCTTCCEEECCSSCCSCCCGGGB-
T ss_pred hc--------------------------cc-cccCCEEECCCCccceECHHHhc--CcccCCEEECCCCcCceeCHhHc-
Confidence 11 11 36889999998887776 44444 88999999999999988887666
Q ss_pred ccceeccccccccccccccccCc
Q 045877 735 TVKVLRLKYLNELKIDWKGLQEL 757 (801)
Q Consensus 735 ~L~~l~L~~L~~L~l~~n~l~~~ 757 (801)
-.+.+|+.|++++|.+...
T Consensus 317 ----~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 317 ----HSVGNLETLILDSNPLACD 335 (477)
T ss_dssp ----SCGGGCCEEECCSSCEECS
T ss_pred ----CCCcccCEEEccCCCccCc
Confidence 3567778888888887643
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=257.49 Aligned_cols=307 Identities=13% Similarity=0.061 Sum_probs=217.0
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
....++++++|++|++++|+|++.. .+..+++|++|.+.+|.+..++ |..+++|++|+|++|.+++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~--------- 99 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN--------- 99 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC---------
T ss_pred cccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce---------
Confidence 3457889999999999999999873 5888999999999999998873 8899999999999999853
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL 574 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~ 574 (801)
++ ++.+++|++|+|++|.+.+ +| ++.+++|++|++++|.+.+ ++ ++.+++|++|++++|...+.+ .+
T Consensus 100 ---~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 100 ---LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp ---CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CC
T ss_pred ---ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--cc
Confidence 22 7889999999999986554 54 8899999999999997666 43 888999999999999766666 47
Q ss_pred CCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 575 SLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 575 ~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
+.+++|++|+ +++|. ...++ +..+++|+.|++++|.+.+. .+..+++|+.|++++|.+.+..
T Consensus 167 ~~l~~L~~L~---ls~n~-------l~~l~--l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~ip- 228 (457)
T 3bz5_A 167 TPQTQLTTLD---CSFNK-------ITELD--VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTEID- 228 (457)
T ss_dssp TTCTTCCEEE---CCSSC-------CCCCC--CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC-
T ss_pred ccCCcCCEEE---CCCCc-------cceec--cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccccC-
Confidence 8889999998 88887 44443 78889999999999988764 3678889999999999888642
Q ss_pred CCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 655 TKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 655 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
+ .. .++|+.|++++|.+..+|.. .+++|+.|++++|.++.+......
T Consensus 229 --~--------------------------~~-l~~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 229 --V--------------------------TP-LTQLTYFDCSVNPLTELDVS----TLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp --C--------------------------TT-CTTCSEEECCSSCCSCCCCT----TCTTCCEEECTTCCCSCCCCTTCT
T ss_pred --c--------------------------cc-cCCCCEEEeeCCcCCCcCHH----HCCCCCEEeccCCCCCEEECCCCc
Confidence 1 01 24666666666666655521 455555555555554444321111
Q ss_pred ccc---eeccccccccccccccccC----cCCCCceeeccCCCCCcccCCCCCc-----ccccCCcceEeCCCcccc
Q 045877 735 TVK---VLRLKYLNELKIDWKGLQE----LFPKLEYLEKFKCHKVTLCPCDGYG-----IWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 735 ~L~---~l~L~~L~~L~l~~n~l~~----~~p~L~~L~l~~c~~L~~lp~~~n~-----i~~~~~L~~LdlS~~~~~ 799 (801)
.+. ...+.+|+.|+++.|...+ ..++|+.|++.+|++|+.+.+..|. +.++++|+.||+++|++.
T Consensus 276 ~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCC
T ss_pred cCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCCCC
Confidence 111 1133455555555554432 2334566666666666666555552 335566666666666653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-27 Score=269.05 Aligned_cols=319 Identities=16% Similarity=0.128 Sum_probs=213.1
Q ss_pred hhhhhhccccccccccchhhcc-hhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIEN-KAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
...|.++++|++|+|++|.+.+ +.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.+++
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------- 117 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG--------- 117 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT---------
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc---------
Confidence 4568899999999999999974 456789999999999999999999999999999999999999999853
Q ss_pred chhhhHh--hcCCcCCceEeecCCCCCccCchh-hcCCCCCCEEeccCCCCCCCCcccccCC--CCCCEEcccCCccccC
Q 045877 495 STDYLKG--LKNMKELRLLSLQGMSGIQELPSE-ISYLTSLEILDLRACYNLDKLPDEIGKL--KSLTHLDISECFLLDG 569 (801)
Q Consensus 495 ~~~lp~~--l~~l~~L~~L~Ls~n~~~~~lp~~-i~~L~~L~~L~Ls~n~~~~~lp~~~~~L--~~L~~L~Ls~n~l~~~ 569 (801)
..+.. +..+++|++|+|++|.+.+..|.. ++++++|++|+|++|.+.+..|..+..+ .+|++|++++|.+.+.
T Consensus 118 --~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 118 --AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp --HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred --cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 23444 889999999999999887777766 8999999999999998888888777665 4555666665555433
Q ss_pred CCcc--------cCCCCcccccccccccCCcchh---hhhh-----------------cc-----------cCccccc--
Q 045877 570 IPKK--------LSLLSKLQVLKGFVISDHAEDD---RRWK-----------------RW-----------CSLKDLE-- 608 (801)
Q Consensus 570 ~p~~--------~~~L~~L~~L~~~~l~~n~~~~---~~~~-----------------~~-----------~~~~~l~-- 608 (801)
.+.. +..+++|++|+ +++|.... ..+. .. .....+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~L~~L~---Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
T 3v47_A 196 NEYWLGWEKCGNPFKNTSITTLD---LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272 (455)
T ss_dssp STTCTTHHHHCCTTTTCEEEEEE---CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG
T ss_pred chhhccccccccccccceeeeEe---cCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccc
Confidence 2221 22344555555 44443100 0000 00 0001111
Q ss_pred CCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccc---c
Q 045877 609 KLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQ---H 685 (801)
Q Consensus 609 ~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~---~ 685 (801)
..++|+.|++++|.+.... +..+..+++|+.|++++|.+.+..+..+ .....++.|+...+.+....+ .
T Consensus 273 ~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 273 EASGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEINKIDDNAF------WGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp TTSCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccCceEEEecCccccccc--hhhcccCCCCCEEECCCCcccccChhHh------cCcccCCEEECCCCccCCcChhHhc
Confidence 1257888888888887766 6678888888888888888876544332 012233444444443322211 1
Q ss_pred cCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccCcCCCCce
Q 045877 686 VESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEY 763 (801)
Q Consensus 686 ~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~ 763 (801)
-.++|+.|+|++|.+..+ |.++. .+++|++|+|++|+|+++++..| -.+++|+.|++++|.+.+.+|.+..
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFL--GLPNLKELALDTNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCTTTT-----TTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CcccCCEEECCCCcccccChhhcc--ccccccEEECCCCccccCCHhHh-----ccCCcccEEEccCCCcccCCCcchH
Confidence 125677777777666555 44444 66777777777777766665544 2455666666677766666665443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-27 Score=272.21 Aligned_cols=303 Identities=18% Similarity=0.097 Sum_probs=227.8
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.+.+++.+++++|.+..+++..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.+++. .+.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----------PPH 117 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----------CTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-----------CHH
Confidence 467888999999999999988899999999999999999998888999999999999999988643 255
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
.|+++++|++|+|++|.+.+..+..|+++++|++|+|++|.+.+..|..|+.+++|++|++++|.+.+. .++.+++|
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L 194 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSL 194 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTC
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhh
Confidence 678999999999999865543334568999999999999988888888899999999999999987754 25567778
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 660 (801)
+.|+ +++|. ...+....+|+.|++++|.+..... . ..++|+.|+|++|.+.+..
T Consensus 195 ~~L~---l~~n~-----------l~~l~~~~~L~~L~ls~n~l~~~~~---~--~~~~L~~L~L~~n~l~~~~------- 248 (597)
T 3oja_B 195 FHAN---VSYNL-----------LSTLAIPIAVEELDASHNSINVVRG---P--VNVELTILKLQHNNLTDTA------- 248 (597)
T ss_dssp SEEE---CCSSC-----------CSEEECCTTCSEEECCSSCCCEEEC---S--CCSCCCEEECCSSCCCCCG-------
T ss_pred hhhh---cccCc-----------cccccCCchhheeeccCCccccccc---c--cCCCCCEEECCCCCCCCCh-------
Confidence 8887 77766 2345566788899999888765541 1 1257888999888877531
Q ss_pred CCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCC-CcccCCCCCCCccEEEeeCCcCCCCCCCccccccee
Q 045877 661 TGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL-PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVL 739 (801)
Q Consensus 661 ~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~l-p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l 739 (801)
.... .++|+.|+|++|.+..+ |..+. .+++|+.|+|++|.+++++... .
T Consensus 249 ---------------------~l~~-l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~------~ 298 (597)
T 3oja_B 249 ---------------------WLLN-YPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNLYG------Q 298 (597)
T ss_dssp ---------------------GGGG-CTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECTTSCCCEEECSS------S
T ss_pred ---------------------hhcc-CCCCCEEECCCCccCCCCHHHhc--CccCCCEEECCCCCCCCCCccc------c
Confidence 0111 25788888888777655 45555 7888888888888877764421 2
Q ss_pred cccccccccccccccc------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 740 RLKYLNELKIDWKGLQ------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 740 ~L~~L~~L~l~~n~l~------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
.+++|+.|++++|.+. +.+++|+.|++.+| ++..++ +..+++|+.|++++|.+.
T Consensus 299 ~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~-----~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK-----LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC-----CCTTCCCSEEECCSSCEE
T ss_pred cCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC-----hhhcCCCCEEEeeCCCCC
Confidence 3456666666666654 34677888888776 455554 456678888888888764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-27 Score=268.66 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=122.7
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
+++++++|+|+.++...+ ++++.|.+.+|.+..+++..|.++++|++|+|++|++++ ..|..|.++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l 68 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-----------LDISVFKFN 68 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-----------EEGGGGTTC
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCC-----------cChHHhhcc
Confidence 468999999997654433 799999999999999999999999999999999999853 337889999
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCcc--cc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL--QV 582 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L--~~ 582 (801)
++|++|+|++|.+ ..+|.. .+++|++|+|++|.+.+ .+|..|+++++|++|++++|.+.+ ..+..+++| +.
T Consensus 69 ~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 69 QELEYLDLSHNKL-VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISK 142 (520)
T ss_dssp TTCCEEECCSSCC-CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred cCCCEEecCCCce-eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeE
Confidence 9999999999855 578876 89999999999998876 578999999999999999999876 346666777 77
Q ss_pred cccccccCCc
Q 045877 583 LKGFVISDHA 592 (801)
Q Consensus 583 L~~~~l~~n~ 592 (801)
|+ ++.|.
T Consensus 143 L~---l~~n~ 149 (520)
T 2z7x_B 143 VL---LVLGE 149 (520)
T ss_dssp EE---EEECT
T ss_pred EE---eeccc
Confidence 77 66554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-27 Score=272.06 Aligned_cols=315 Identities=18% Similarity=0.175 Sum_probs=200.4
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|..+++|++|+|++|+|++..+..|..+++|++|++.+|.+..+++..|.++++|++|+|++|.++...
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------- 114 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-------- 114 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC--------
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc--------
Confidence 356888999999999999999999999999999999999999999999998999999999999999986432
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccC----------------------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGK---------------------- 552 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~---------------------- 552 (801)
.+..+.++++|++|+|++|..++.+| ..++++++|++|++++|.+.+..|..++.
T Consensus 115 --~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 192 (549)
T 2z81_A 115 --VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192 (549)
T ss_dssp --SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHH
T ss_pred --hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhH
Confidence 23456667777777777765555554 45666777777777776666555554443
Q ss_pred --CCCCCEEcccCCccccCC------------------------------------------------------------
Q 045877 553 --LKSLTHLDISECFLLDGI------------------------------------------------------------ 570 (801)
Q Consensus 553 --L~~L~~L~Ls~n~l~~~~------------------------------------------------------------ 570 (801)
+++|++|++++|.+.+..
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 272 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 455666666666654421
Q ss_pred -----------------------------------------------------Cccc-CCCCcccccccccccCCcchhh
Q 045877 571 -----------------------------------------------------PKKL-SLLSKLQVLKGFVISDHAEDDR 596 (801)
Q Consensus 571 -----------------------------------------------------p~~~-~~L~~L~~L~~~~l~~n~~~~~ 596 (801)
|..+ ..+++|++|+ +++|.
T Consensus 273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~---Ls~N~---- 345 (549)
T 2z81_A 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD---LSENL---- 345 (549)
T ss_dssp TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE---CCSSC----
T ss_pred chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE---ccCCc----
Confidence 0000 1122222222 22222
Q ss_pred hhhccc-C---cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhh
Q 045877 597 RWKRWC-S---LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTL 672 (801)
Q Consensus 597 ~~~~~~-~---~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L 672 (801)
... . +..++.+++|++|++++|.+.........+..+++|+.|++++|.+.+.... + .....++.|
T Consensus 346 ---l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~------~~~~~L~~L 415 (549)
T 2z81_A 346 ---MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-C------QWPEKMRFL 415 (549)
T ss_dssp ---CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-C------CCCTTCCEE
T ss_pred ---cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-h------cccccccEE
Confidence 000 0 1123444455555555554443220013456666777777777766643211 1 112445566
Q ss_pred hcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccc
Q 045877 673 TKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWK 752 (801)
Q Consensus 673 ~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n 752 (801)
+...+.+..+....+++|+.|+|++|.+..++ . .+++|++|+|++|+|+.++.. ..+++|+.|++++|
T Consensus 416 ~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~---~--~l~~L~~L~Ls~N~l~~ip~~-------~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---L--FLPRLQELYISRNKLKTLPDA-------SLFPVLLVMKISRN 483 (549)
T ss_dssp ECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC---C--CCTTCCEEECCSSCCSSCCCG-------GGCTTCCEEECCSS
T ss_pred ECCCCCcccccchhcCCceEEECCCCChhhhc---c--cCChhcEEECCCCccCcCCCc-------ccCccCCEEecCCC
Confidence 66666665555555567888888888776553 2 778889999999988876652 24678889999999
Q ss_pred cccCc-------CCCCceeeccCC
Q 045877 753 GLQEL-------FPKLEYLEKFKC 769 (801)
Q Consensus 753 ~l~~~-------~p~L~~L~l~~c 769 (801)
.+++. +++|+.|++.++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ccCCcCHHHHhcCcccCEEEecCC
Confidence 88743 344555555444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=272.16 Aligned_cols=353 Identities=17% Similarity=0.083 Sum_probs=196.5
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|.++++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|.+++.
T Consensus 66 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------- 136 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST--------- 136 (680)
T ss_dssp TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC---------
T ss_pred HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc---------
Confidence 45678888889999998888888888888888899998888888888888888888899999988887543
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhc--CCCCCCEEeccCCCCCCCCccc------------------------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEIS--YLTSLEILDLRACYNLDKLPDE------------------------ 549 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~--~L~~L~~L~Ls~n~~~~~lp~~------------------------ 549 (801)
.+..+.++++|++|+|++|.+.+..+..+. .+++|++|++++|.+.+..|..
T Consensus 137 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 214 (680)
T 1ziw_A 137 --KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214 (680)
T ss_dssp --CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHH
T ss_pred --CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHH
Confidence 234456666666666666655444444433 3456666666666554444433
Q ss_pred ---------------------------ccCCCC--CCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhc
Q 045877 550 ---------------------------IGKLKS--LTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKR 600 (801)
Q Consensus 550 ---------------------------~~~L~~--L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~ 600 (801)
+..++. |++|++++|.+.+..|..|+.+++|++|+ +++|. + .
T Consensus 215 ~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---L~~n~-----l-~ 285 (680)
T 1ziw_A 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF---LEYNN-----I-Q 285 (680)
T ss_dssp HHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE---CCSCC-----B-S
T ss_pred HHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee---CCCCc-----c-C
Confidence 333322 55555555555544444555555555555 44444 0 1
Q ss_pred ccCcccccCCccCCeeEeeccccccccc-------ChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhh
Q 045877 601 WCSLKDLEKLEHLRKLTININSEKFQTE-------NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLT 673 (801)
Q Consensus 601 ~~~~~~l~~L~~L~~L~L~~n~~~~~~~-------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~ 673 (801)
...+..|..+++|+.|++++|...+... ....+..+++|+.|++++|.+.+..+..+. ....++.|+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~ 359 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT------GLINLKYLS 359 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT------TCTTCCEEE
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc------cccCCcEEE
Confidence 1123345555555555555443221110 012566677777777777777765443321 112233333
Q ss_pred cccccc--ccccc----c-cCCCccEEEccCCCCCCCC-cccCCCCCCCccEEEeeCCcCCCC-CCCcc---cccceec-
Q 045877 674 KFRTRV--TERSQ----H-VESKLEKLDFQCFPDEKLP-SWVHPYSFKNLKNLYIRGGRLNSL-EGSEW---ETVKVLR- 740 (801)
Q Consensus 674 ~~~~~l--~~~~~----~-~~~~L~~L~L~~n~~~~lp-~~l~~~~l~~L~~L~L~~n~l~~~-~~~~f---~~L~~l~- 740 (801)
...+.+ ..... . ..++|+.|++++|.+..++ ..+. .+++|++|+|++|.+.+. +...| ++|+.++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh--CCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 222211 00000 0 0135666666666555443 2333 666666666666666542 22222 2222222
Q ss_pred ---------------ccccccccccccccc---------CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCc
Q 045877 741 ---------------LKYLNELKIDWKGLQ---------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQ 796 (801)
Q Consensus 741 ---------------L~~L~~L~l~~n~l~---------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~ 796 (801)
++.|+.|+++.|.+. +.+++|+.|++.++ +++.++. ..+..+++|++||+++|
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIND--DMLEGLEKLEILDLQHN 514 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCCh--hhhccccccCEEeCCCC
Confidence 233444444444332 22344555555444 3443332 24567788889999888
Q ss_pred ccc
Q 045877 797 QHR 799 (801)
Q Consensus 797 ~~~ 799 (801)
++.
T Consensus 515 ~l~ 517 (680)
T 1ziw_A 515 NLA 517 (680)
T ss_dssp CCG
T ss_pred Ccc
Confidence 765
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=265.62 Aligned_cols=342 Identities=17% Similarity=0.116 Sum_probs=220.6
Q ss_pred cccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcC
Q 045877 425 LFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN 504 (801)
Q Consensus 425 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~ 504 (801)
.+++++++|++++++...+ ++++.|++.+|.+..+++..|.++++|++|+|++|.+++ ..|..|.+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~ 98 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-----------LDFHVFLF 98 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-----------ECTTTTTT
T ss_pred CcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-----------CCHHHhCC
Confidence 3789999999998665443 789999999999999999999999999999999999853 23678999
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCcc--c
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL--Q 581 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L--~ 581 (801)
+++|++|+|++|.+ ..+|.. .+++|++|+|++|.+.+ .+|..|+++++|++|++++|.+.+. .+..+++| +
T Consensus 99 l~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRL-QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLS 172 (562)
T ss_dssp CTTCCEEECTTSCC-CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEE
T ss_pred CCCCCEEECCCCcC-CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceee
Confidence 99999999999864 578876 89999999999997766 4568999999999999999998763 34455555 8
Q ss_pred ccccccccCCcchhhhhhcccCcc--------------------------cccCCccCCeeEeecccc------------
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSLK--------------------------DLEKLEHLRKLTININSE------------ 623 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~~--------------------------~l~~L~~L~~L~L~~n~~------------ 623 (801)
+|+ ++.|.... ....+. .+..+++|+.|++++|..
T Consensus 173 ~L~---L~~n~l~~----~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l 245 (562)
T 3a79_B 173 CIL---LDLVSYHI----KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245 (562)
T ss_dssp EEE---EEESSCCC----CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred EEE---eecccccc----cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHH
Confidence 887 76665100 001122 233456777777777631
Q ss_pred ----------------cccc-cChhhhhcccCCcEEEeeccCCCCCCCCCCC----CCCCccc-----------------
Q 045877 624 ----------------KFQT-ENLSTVLAFKRLLQLKVSWGGGSANKSTKPE----PQTGRKD----------------- 665 (801)
Q Consensus 624 ----------------~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~~~----------------- 665 (801)
.+.. ..........+|++|++++|.+.+..+..+. ..+....
T Consensus 246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~ 325 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325 (562)
T ss_dssp HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHH
T ss_pred hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhh
Confidence 1100 0000111234889999999988865554331 0000000
Q ss_pred ----hhchhhhhccccccccccc-ccCCCccEEEccCCCCCC-CCcccCCCCCCCccEEEeeCCcCCCCCC-----Cccc
Q 045877 666 ----NFFIKTLTKFRTRVTERSQ-HVESKLEKLDFQCFPDEK-LPSWVHPYSFKNLKNLYIRGGRLNSLEG-----SEWE 734 (801)
Q Consensus 666 ----~~~l~~L~~~~~~l~~~~~-~~~~~L~~L~L~~n~~~~-lp~~l~~~~l~~L~~L~L~~n~l~~~~~-----~~f~ 734 (801)
...++.|....+.+..... ...++|+.|+|++|.+.. +|.++. .+++|++|+|++|.+++++. ..++
T Consensus 326 ~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred hhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 0113333333333322221 112455555555554443 334433 45555555555555544331 1122
Q ss_pred cccee-----------------ccccccccccccccccC----cC-CCCceeeccCCCCCcccCCCCCcccccCCcceEe
Q 045877 735 TVKVL-----------------RLKYLNELKIDWKGLQE----LF-PKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLN 792 (801)
Q Consensus 735 ~L~~l-----------------~L~~L~~L~l~~n~l~~----~~-p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~Ld 792 (801)
+|+.+ .+.+|+.|++++|.+++ .+ ++|+.|+++++ +++.+|. .+.++++|++||
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~---~~~~l~~L~~L~ 479 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPK---DVTHLQALQELN 479 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCT---TTTSSCCCSEEE
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccCh---hhcCCCCCCEEE
Confidence 22222 34566777777777752 23 57888888887 6777765 556889999999
Q ss_pred CCCcccc
Q 045877 793 NSKQQHR 799 (801)
Q Consensus 793 lS~~~~~ 799 (801)
+++|++.
T Consensus 480 L~~N~l~ 486 (562)
T 3a79_B 480 VASNQLK 486 (562)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 9999876
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=256.79 Aligned_cols=322 Identities=18% Similarity=0.157 Sum_probs=229.7
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+..+++|++|+|++|+|++..+ +..+++|++|.+.+|.+..+++ |.++++|++|+|++|.++.
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~---------- 126 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD---------- 126 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------
T ss_pred CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC----------
Confidence 3457889999999999999999876 8899999999999999988876 8999999999999998853
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
++. +.++++|++|+|++|.+ ..++ .++.+++|++|+++++ ..+ ++ .+.++++|++|++++|.+... + .+.
T Consensus 127 --~~~-~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~~~-~~~-~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~ 196 (466)
T 1o6v_A 127 --IDP-LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFGNQ-VTD-LK-PLANLTTLERLDISSNKVSDI-S-VLA 196 (466)
T ss_dssp --CGG-GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEEES-CCC-CG-GGTTCTTCCEEECCSSCCCCC-G-GGG
T ss_pred --ChH-HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeecCCc-ccC-ch-hhccCCCCCEEECcCCcCCCC-h-hhc
Confidence 232 88899999999999854 4455 4788888888888643 433 33 278888888888888886543 2 477
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+++|++|+ +++|. ....+ .++.+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+.
T Consensus 197 ~l~~L~~L~---l~~n~-------l~~~~-~~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~~ 261 (466)
T 1o6v_A 197 KLTNLESLI---ATNNQ-------ISDIT-PLGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAPL 261 (466)
T ss_dssp GCTTCSEEE---CCSSC-------CCCCG-GGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred cCCCCCEEE---ecCCc-------ccccc-cccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchhh
Confidence 788888887 77776 32232 267788888888888877653 4577788888888888877764321
Q ss_pred CCCCCCCccchhchhhhhccccccccccc-ccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQ-HVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~-~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
.....++.|....+.+....+ ...++|+.|+|++|.+..++. +. .+++|+.|+|++|.+++..+ +
T Consensus 262 --------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~L~~n~l~~~~~--~- 327 (466)
T 1o6v_A 262 --------SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-IS--NLKNLTYLTLYFNNISDISP--V- 327 (466)
T ss_dssp --------TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GG--GCTTCSEEECCSSCCSCCGG--G-
T ss_pred --------hcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hc--CCCCCCEEECcCCcCCCchh--h-
Confidence 112334444444443332211 113678888888887777665 33 78888888888888877754 2
Q ss_pred ccceecccccccccccccccc-----CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 735 TVKVLRLKYLNELKIDWKGLQ-----ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 735 ~L~~l~L~~L~~L~l~~n~l~-----~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+.+|+.|++++|.+. +.+++|+.|++.+| ++..++. +.++++|+.|++++|++.
T Consensus 328 ----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 328 ----SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN-QISDLTP----LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ----GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGG----GTTCTTCCEEECCCEEEE
T ss_pred ----ccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC-ccCccch----hhcCCCCCEEeccCCccc
Confidence 24566666666666665 35667777777776 3444332 567888999999988765
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-27 Score=273.04 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=130.5
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++++.|+|++|+|+++.+..|..+++|++|++.+|.+..+.+..|.++++|++|+|++|.++. ..+..|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~ 96 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-----------LALGAF 96 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-----------ECTTTT
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-----------cCHhhh
Confidence 478999999999999999999999999999999999999999999999999999999999853 225789
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
.++++|++|+|++|.+.+..+..++++++|++|+|++|.+.+ .+|..|+++++|++|++++|.+.+..+..++.+.+|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 999999999999986554444479999999999999997776 579999999999999999999988777778777777
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=242.41 Aligned_cols=299 Identities=14% Similarity=0.096 Sum_probs=233.8
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
..+++.++++++.++.++... .+.++.|.+.+|.+..+++..|.++++|++|+|++|.++. ..|..
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~ 95 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-----------ISPGA 95 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-----------BCTTT
T ss_pred cCCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-----------eCHHH
Confidence 346788999999988765433 2578999999999999999899999999999999999853 23678
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcccc--CCCcccCCCCc
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLD--GIPKKLSLLSK 579 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~--~~p~~~~~L~~ 579 (801)
|..+++|++|+|++|. +..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 8999999999999985 557777665 799999999998887777789999999999999999853 66778899999
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
|++|+ +++|. ...++..+. ++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+..+
T Consensus 173 L~~L~---l~~n~-------l~~l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-- 236 (330)
T 1xku_A 173 LSYIR---IADTN-------ITTIPQGLP--PSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL-- 236 (330)
T ss_dssp CCEEE---CCSSC-------CCSCCSSCC--TTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG--
T ss_pred cCEEE---CCCCc-------cccCCcccc--ccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhc--
Confidence 99998 88887 445555443 79999999999998776 7789999999999999999876443211
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccccccee
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVL 739 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l 739 (801)
.. .++|+.|+|++|.+..+|.++. .+++|++|+|++|.|++++...|......
T Consensus 237 ------------------------~~-l~~L~~L~L~~N~l~~lp~~l~--~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 237 ------------------------AN-TPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp ------------------------GG-STTCCEEECCSSCCSSCCTTTT--TCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred ------------------------cC-CCCCCEEECCCCcCccCChhhc--cCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 12 3689999999999999999987 99999999999999999988776322110
Q ss_pred ccccccccccccccccCcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcc
Q 045877 740 RLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQ 797 (801)
Q Consensus 740 ~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~ 797 (801)
...+.|+.|++.+.+ +.........+..+.+|+.+|+++|+
T Consensus 290 ----------------~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 ----------------TKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ----------------TTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ----------------cccccccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence 123455666666553 33333333466677888888888875
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=243.67 Aligned_cols=297 Identities=16% Similarity=0.152 Sum_probs=233.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
..++.++++++.++.++... .++++.|.+.+|.+..+.+..|.++++|++|+|++|.++. ..|..|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~ 98 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-----------IHEKAF 98 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECGGGS
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-----------cCHhHh
Confidence 36788999999998665443 2589999999999999999999999999999999999853 237789
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc--cCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL--DGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~--~~~p~~~~~L~~L 580 (801)
.++++|++|+|++|. +..+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+. +..+..+..+ +|
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred hCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 999999999999985 457777665 89999999999777666667999999999999999985 3677778888 89
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 660 (801)
++|+ +++|. ...++..+. ++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+..+
T Consensus 175 ~~L~---l~~n~-------l~~l~~~~~--~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~--- 237 (332)
T 2ft3_A 175 NYLR---ISEAK-------LTGIPKDLP--ETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENGSL--- 237 (332)
T ss_dssp SCCB---CCSSB-------CSSCCSSSC--SSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTTGG---
T ss_pred CEEE---CcCCC-------CCccCcccc--CCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChhHh---
Confidence 9998 88887 455565544 78999999999998776 6788999999999999999887543211
Q ss_pred CCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceec
Q 045877 661 TGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLR 740 (801)
Q Consensus 661 ~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~ 740 (801)
.. .++|+.|+|++|.+..+|.++. .+++|++|+|++|.|++++...|..+.
T Consensus 238 -----------------------~~-l~~L~~L~L~~N~l~~lp~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~~~--- 288 (332)
T 2ft3_A 238 -----------------------SF-LPTLRELHLDNNKLSRVPAGLP--DLKLLQVVYLHTNNITKVGVNDFCPVG--- 288 (332)
T ss_dssp -----------------------GG-CTTCCEEECCSSCCCBCCTTGG--GCTTCCEEECCSSCCCBCCTTSSSCSS---
T ss_pred -----------------------hC-CCCCCEEECCCCcCeecChhhh--cCccCCEEECCCCCCCccChhHccccc---
Confidence 12 3699999999999999999987 999999999999999999886663221
Q ss_pred cccccccccccccccCcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcc
Q 045877 741 LKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQ 797 (801)
Q Consensus 741 L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~ 797 (801)
+...++.|+.|++.+++ +.........+..+++|+.|++++|+
T Consensus 289 -------------~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 -------------FGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -------------CCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -------------cccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 01124566777777764 33333333466778888888888875
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=251.94 Aligned_cols=291 Identities=17% Similarity=0.122 Sum_probs=241.1
Q ss_pred hcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeec
Q 045877 435 IENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQ 514 (801)
Q Consensus 435 l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls 514 (801)
+.+..+..+..+++|+.|.+.+|.+.+++ .|..+++|++|+|++|.+++ ++ ++.+++|++|+|+
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~------------~~--~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT------------LD--LSQNTNLTYLACD 93 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC------------CC--CTTCTTCSEEECC
T ss_pred cCcccccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe------------Ec--cccCCCCCEEECc
Confidence 34445556778899999999999999874 68999999999999999853 23 7889999999999
Q ss_pred CCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcch
Q 045877 515 GMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAED 594 (801)
Q Consensus 515 ~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~ 594 (801)
+|.+.+ ++ ++++++|++|++++|.+.+ +| ++.+++|++|++++|.+.+ ++ ++.+++|++|+ +++|.
T Consensus 94 ~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~---l~~n~-- 159 (457)
T 3bz5_A 94 SNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELD---CHLNK-- 159 (457)
T ss_dssp SSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEE---CTTCS--
T ss_pred CCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEE---CCCCC--
Confidence 986555 44 8999999999999997665 55 8999999999999999886 43 88999999999 88874
Q ss_pred hhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhc
Q 045877 595 DRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTK 674 (801)
Q Consensus 595 ~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~ 674 (801)
..... .++.+++|+.|++++|.+.+. + +..+++|+.|++++|.+.+...
T Consensus 160 -----~~~~~-~~~~l~~L~~L~ls~n~l~~l---~--l~~l~~L~~L~l~~N~l~~~~l-------------------- 208 (457)
T 3bz5_A 160 -----KITKL-DVTPQTQLTTLDCSFNKITEL---D--VSQNKLLNRLNCDTNNITKLDL-------------------- 208 (457)
T ss_dssp -----CCCCC-CCTTCTTCCEEECCSSCCCCC---C--CTTCTTCCEEECCSSCCSCCCC--------------------
T ss_pred -----ccccc-ccccCCcCCEEECCCCcccee---c--cccCCCCCEEECcCCcCCeecc--------------------
Confidence 11122 588999999999999998874 2 7889999999999999886421
Q ss_pred ccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecc--ccccccccccc
Q 045877 675 FRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRL--KYLNELKIDWK 752 (801)
Q Consensus 675 ~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L--~~L~~L~l~~n 752 (801)
.. .++|+.|++++|.+..+| +. .+++|++|++++|.+++++...+++|+.+.+ .+|+.|+++.|
T Consensus 209 ---------~~-l~~L~~L~Ls~N~l~~ip--~~--~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 209 ---------NQ-NIQLTFLDCSSNKLTEID--VT--PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp ---------TT-CTTCSEEECCSSCCSCCC--CT--TCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred ---------cc-CCCCCEEECcCCcccccC--cc--ccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCC
Confidence 11 379999999999999988 44 8999999999999999999888999987765 47888999888
Q ss_pred ccc-----CcCCCCceeeccCCCCCcccCCCCC-----cccccCCcceEeCCCccccC
Q 045877 753 GLQ-----ELFPKLEYLEKFKCHKVTLCPCDGY-----GIWEKSDLINLNNSKQQHRA 800 (801)
Q Consensus 753 ~l~-----~~~p~L~~L~l~~c~~L~~lp~~~n-----~i~~~~~L~~LdlS~~~~~~ 800 (801)
.+. +.+++|+.|++++|..+..+|...+ .+.+.++|+.|++++|++..
T Consensus 275 ~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 275 TQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp TTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred ccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 765 4568999999999998888887555 34567899999999998863
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-26 Score=249.65 Aligned_cols=282 Identities=15% Similarity=0.089 Sum_probs=234.6
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
.+.+++.+.+.++.+..+++..|.++++|++|+|++|.++.. .+..|..+++|++|+|++|.+.+..|.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-----------DTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-----------ChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 467899999999999999999999999999999999998532 245789999999999999977777778
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcc-cccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccC
Q 045877 525 EISYLTSLEILDLRACYNLDKLPD-EIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS 603 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~-~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~ 603 (801)
.++++++|++|+|++|.+. .+|. .|.++++|++|++++|.+.+..|..++.+++|++|+ +++|. ....
T Consensus 112 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---l~~n~-------l~~~ 180 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ---LSSNR-------LTHV 180 (390)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE---CCSSC-------CSBC
T ss_pred HhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE---CCCCc-------CCcc
Confidence 8999999999999999666 4554 468999999999999999888888899999999999 88887 2222
Q ss_pred cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc
Q 045877 604 LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS 683 (801)
Q Consensus 604 ~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~ 683 (801)
.+..+++|+.|++++|.+... ....+|+.|++++|.+.....
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~~----------------------------- 222 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRG----------------------------- 222 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEEC-----------------------------
T ss_pred --ccccccccceeeccccccccc-------CCCCcceEEECCCCeeeeccc-----------------------------
Confidence 467889999999999987653 334689999999998764311
Q ss_pred cccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc------Cc
Q 045877 684 QHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ------EL 757 (801)
Q Consensus 684 ~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~------~~ 757 (801)
..+++|+.|++++|.+..+ .++. .+++|++|+|++|.++++.+..| ..+++|+.|++++|.+. +.
T Consensus 223 -~~~~~L~~L~l~~n~l~~~-~~l~--~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (390)
T 3o6n_A 223 -PVNVELTILKLQHNNLTDT-AWLL--NYPGLVEVDLSYNELEKIMYHPF-----VKMQRLERLYISNNRLVALNLYGQP 293 (390)
T ss_dssp -CCCSSCCEEECCSSCCCCC-GGGG--GCTTCSEEECCSSCCCEEESGGG-----TTCSSCCEEECCSSCCCEEECSSSC
T ss_pred -cccccccEEECCCCCCccc-HHHc--CCCCccEEECCCCcCCCcChhHc-----cccccCCEEECCCCcCcccCcccCC
Confidence 1236899999999998876 4665 89999999999999999877666 35677888888888876 46
Q ss_pred CCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 758 FPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 758 ~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
+++|+.|++.+| +++.+|. .+..+++|+.||+++|++.
T Consensus 294 l~~L~~L~L~~n-~l~~~~~---~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 294 IPTLKVLDLSHN-HLLHVER---NQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CTTCCEEECCSS-CCCCCGG---GHHHHTTCSEEECCSSCCC
T ss_pred CCCCCEEECCCC-cceecCc---cccccCcCCEEECCCCccc
Confidence 889999999998 6777765 5778999999999999875
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=241.90 Aligned_cols=296 Identities=16% Similarity=0.162 Sum_probs=232.5
Q ss_pred ccCCCcchhhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCC
Q 045877 407 NFGEKPEQKAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVD 486 (801)
Q Consensus 407 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~ 486 (801)
.+.+........+..+++|++|++++|+|++..+ +..+++|++|.+.+|.+..+ ..|.++++|++|+|++|.++.
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~- 124 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD- 124 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-
Confidence 3333333334568899999999999999998876 88999999999999999886 369999999999999999853
Q ss_pred CCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc
Q 045877 487 DIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 487 ~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l 566 (801)
++. +..+++|++|++++|.....++. +..+++|++|++++|.+... +. +..+++|++|++++|.+
T Consensus 125 -----------~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 125 -----------ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp -----------CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCC
T ss_pred -----------chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCcc
Confidence 333 88999999999999977776655 99999999999999965544 33 88999999999999997
Q ss_pred ccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeec
Q 045877 567 LDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSW 646 (801)
Q Consensus 567 ~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~ 646 (801)
.+. +. +..+++|+.|+ +++|. ..... .+..+++|++|++++|.+.... .+..+++|+.|++++
T Consensus 190 ~~~-~~-~~~l~~L~~L~---l~~n~-------l~~~~-~~~~~~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 190 EDI-SP-LASLTSLHYFT---AYVNQ-------ITDIT-PVANMTRLNSLKIGNNKITDLS----PLANLSQLTWLEIGT 252 (347)
T ss_dssp CCC-GG-GGGCTTCCEEE---CCSSC-------CCCCG-GGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCS
T ss_pred ccc-cc-ccCCCccceee---cccCC-------CCCCc-hhhcCCcCCEEEccCCccCCCc----chhcCCCCCEEECCC
Confidence 653 33 88889999998 77777 33333 3889999999999999987654 288999999999999
Q ss_pred cCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC
Q 045877 647 GGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 647 n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~ 726 (801)
|.+.+.. .+ .. .++|+.|++++|.+..++ .+. .+++|++|+|++|.++
T Consensus 253 n~l~~~~---------------------------~~-~~-l~~L~~L~l~~n~l~~~~-~~~--~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 253 NQISDIN---------------------------AV-KD-LTKLKMLNVGSNQISDIS-VLN--NLSQLNSLFLNNNQLG 300 (347)
T ss_dssp SCCCCCG---------------------------GG-TT-CTTCCEEECCSSCCCCCG-GGG--GCTTCSEEECCSSCCC
T ss_pred CccCCCh---------------------------hH-hc-CCCcCEEEccCCccCCCh-hhc--CCCCCCEEECcCCcCC
Confidence 9887531 11 11 379999999999998875 344 8999999999999998
Q ss_pred CCCCCcccccceeccccccccccccccccCcCCCCceeeccCCCCCcccCCCCCcc
Q 045877 727 SLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGI 782 (801)
Q Consensus 727 ~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i 782 (801)
+..+..| ..+++|+.|++++|.+++..| +..+++|+.+.+.+|.+
T Consensus 301 ~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 301 NEDMEVI-----GGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGHHHH-----HTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC--
T ss_pred CcChhHh-----hccccCCEEEccCCccccccC------hhhhhccceeehhhhcc
Confidence 8876555 356788888888888874322 34455555555555443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=262.17 Aligned_cols=283 Identities=14% Similarity=0.070 Sum_probs=237.1
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
.+.+++.+.+.++.+..+++..|.++++|++|+|++|.+++. .+..|..+++|++|+|++|.+.+..|.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-----------DTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-----------ChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 356788999999999999999999999999999999998532 245889999999999999987777777
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
.|+++++|++|+|++|.+.+..+..|+++++|++|+|++|.+.+..|..|+.+++|++|+ +++|. ....
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~---L~~N~-------l~~~- 186 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ---LSSNR-------LTHV- 186 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE---CTTSC-------CSBC-
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE---CcCCC-------CCCc-
Confidence 889999999999999977655555579999999999999999988888899999999999 88887 3222
Q ss_pred ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccc
Q 045877 605 KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQ 684 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~ 684 (801)
.++.+++|+.|++++|.+.+. ....+|+.|++++|.+.....
T Consensus 187 -~~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~~------------------------------ 228 (597)
T 3oja_B 187 -DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRG------------------------------ 228 (597)
T ss_dssp -CGGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEEC------------------------------
T ss_pred -ChhhhhhhhhhhcccCccccc-------cCCchhheeeccCCccccccc------------------------------
Confidence 467789999999999987653 345689999999998764321
Q ss_pred ccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc------CcC
Q 045877 685 HVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ------ELF 758 (801)
Q Consensus 685 ~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~------~~~ 758 (801)
..+++|+.|+|++|.+... .++. .+++|+.|+|++|.+.++.+..| ..+.+|+.|++++|.+. +.+
T Consensus 229 ~~~~~L~~L~L~~n~l~~~-~~l~--~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~l~~~~~~l 300 (597)
T 3oja_B 229 PVNVELTILKLQHNNLTDT-AWLL--NYPGLVEVDLSYNELEKIMYHPF-----VKMQRLERLYISNNRLVALNLYGQPI 300 (597)
T ss_dssp SCCSCCCEEECCSSCCCCC-GGGG--GCTTCSEEECCSSCCCEEESGGG-----TTCSSCCEEECTTSCCCEEECSSSCC
T ss_pred ccCCCCCEEECCCCCCCCC-hhhc--cCCCCCEEECCCCccCCCCHHHh-----cCccCCCEEECCCCCCCCCCcccccC
Confidence 2246899999999998764 5666 89999999999999999987766 45678888888888876 458
Q ss_pred CCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 759 PKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 759 p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
|+|+.|++++| .+..+|. .+..+++|++||+++|++.
T Consensus 301 ~~L~~L~Ls~N-~l~~i~~---~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 301 PTLKVLDLSHN-HLLHVER---NQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp TTCCEEECCSS-CCCCCGG---GHHHHTTCSEEECCSSCCC
T ss_pred CCCcEEECCCC-CCCccCc---ccccCCCCCEEECCCCCCC
Confidence 89999999998 6777775 6788999999999999875
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=250.08 Aligned_cols=321 Identities=17% Similarity=0.159 Sum_probs=249.9
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchh
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTD 497 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 497 (801)
....++.|+.|+++++.+..+. .+..+++|+.|.+.+|.+..+++ |.++++|++|+|++|.++.
T Consensus 41 ~~~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------------ 104 (466)
T 1o6v_A 41 SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD------------ 104 (466)
T ss_dssp CHHHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC------------
T ss_pred ChhHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc------------
Confidence 3456788999999999998754 36788999999999999998876 9999999999999999853
Q ss_pred hhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 498 YLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 498 lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
++. +.++++|++|+|++|.+ ..++. ++++++|++|++++|.+.+ ++ .++.+++|++|++++ .+.+. + .+..+
T Consensus 105 ~~~-~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~-~~~~l 176 (466)
T 1o6v_A 105 ITP-LANLTNLTGLTLFNNQI-TDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-K-PLANL 176 (466)
T ss_dssp CGG-GTTCTTCCEEECCSSCC-CCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-G-GGTTC
T ss_pred Chh-hcCCCCCCEEECCCCCC-CCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-h-hhccC
Confidence 233 89999999999999854 45554 9999999999999996554 44 489999999999974 44433 3 38999
Q ss_pred CcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 578 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
++|++|+ +++|. ... ...+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.+...
T Consensus 177 ~~L~~L~---l~~n~-------l~~-~~~l~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~--- 238 (466)
T 1o6v_A 177 TTLERLD---ISSNK-------VSD-ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNGNQLKDIGT--- 238 (466)
T ss_dssp TTCCEEE---CCSSC-------CCC-CGGGGGCTTCSEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGG---
T ss_pred CCCCEEE---CcCCc-------CCC-ChhhccCCCCCEEEecCCcccccc----cccccCCCCEEECCCCCcccchh---
Confidence 9999999 88887 332 356889999999999999987654 27889999999999999876421
Q ss_pred CCCCCccchhchhhhhccccccccccc-ccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccccc
Q 045877 658 EPQTGRKDNFFIKTLTKFRTRVTERSQ-HVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETV 736 (801)
Q Consensus 658 ~~~~~~~~~~~l~~L~~~~~~l~~~~~-~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L 736 (801)
+ .....++.|+...+.+....+ ...++|+.|++++|.+..++. +. .+++|++|+|++|.+.++++ +
T Consensus 239 ---l--~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~L~~n~l~~~~~--~--- 305 (466)
T 1o6v_A 239 ---L--ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LA--GLTALTNLELNENQLEDISP--I--- 305 (466)
T ss_dssp ---G--GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GT--TCTTCSEEECCSSCCSCCGG--G---
T ss_pred ---h--hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-cc--CCCccCeEEcCCCcccCchh--h---
Confidence 0 122345555555554433321 123689999999998888776 44 88999999999999888765 3
Q ss_pred ceecccccccccccccccc-----CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCccccC
Q 045877 737 KVLRLKYLNELKIDWKGLQ-----ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHRA 800 (801)
Q Consensus 737 ~~l~L~~L~~L~l~~n~l~-----~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~~ 800 (801)
..+++|+.|++++|.+. +.+++|+.|++.+| +++.++ .+.++++|+.|++++|++..
T Consensus 306 --~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 306 --SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp --GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSSCCCB
T ss_pred --cCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCch----hhccCCCCCEEeCCCCccCc
Confidence 35677778888888776 46778888888887 566653 57789999999999998753
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=262.03 Aligned_cols=140 Identities=18% Similarity=0.138 Sum_probs=109.6
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
++++|||++|+|+++.+..|..+++|++|++.+|.|..+++++|.++++|++|+|++|+++... +..|.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-----------~~~f~ 121 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-----------LGAFS 121 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-----------GGGGT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-----------HHHhc
Confidence 6788888888888888888888888888888888888888888888888888888888874321 35678
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKL 574 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~ 574 (801)
++++|++|+|++|.+.+..+..|++|++|++|+|++|.+.. .+|..++.+++|++|++++|++.+..+..+
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 88888888888886655444568888888888888887654 457778888888888888887765544443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=239.96 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=185.3
Q ss_pred cCceeeecCCcccCC--CChhhhccCCCCCEEEcCC-cccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc
Q 045877 447 GRIETLFNVSEEFPE--FKYDWFSKLEKIKVLYLGR-WQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP 523 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~--~~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp 523 (801)
.+++.|.+.++.+.+ ..+..|.++++|++|+|++ |.+++ .+|..|.++++|++|+|++|.+.+.+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-----------~~p~~l~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-----------PIPPAIAKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-----------CCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-----------cCChhHhcCCCCCEEECcCCeeCCcCC
Confidence 355666666666665 4566777788888888884 66642 446677888888888888877766788
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCC-cccccccccccCCcchhhhhhcc-
Q 045877 524 SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLS-KLQVLKGFVISDHAEDDRRWKRW- 601 (801)
Q Consensus 524 ~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~-~L~~L~~~~l~~n~~~~~~~~~~- 601 (801)
..++++++|++|+|++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+. +|++|+ +++|. ..
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~---L~~N~-------l~~ 188 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT---ISRNR-------LTG 188 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE---CCSSE-------EEE
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE---CcCCe-------eec
Confidence 8888888888888888877777888888888888888888888777888888877 788887 77776 22
Q ss_pred cCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccc
Q 045877 602 CSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTE 681 (801)
Q Consensus 602 ~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~ 681 (801)
..+..+..++ |++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+ .
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~ 239 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFDLG--------------------------K 239 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCBGG--------------------------G
T ss_pred cCChHHhCCc-ccEEECcCCcccCcC--CHHHhcCCCCCEEECCCCceeeecC--------------------------c
Confidence 4566777776 888888888887765 6778888899999998888765322 1
Q ss_pred cccccCCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccc
Q 045877 682 RSQHVESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKG 753 (801)
Q Consensus 682 ~~~~~~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~ 753 (801)
+ ...++|++|+|++|.+. .+|.++. .+++|++|+|++|++++..+.. ..+++|+.+++.+|.
T Consensus 240 ~--~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~------~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 V--GLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQG------GNLQRFDVSAYANNK 302 (313)
T ss_dssp C--CCCTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCSSEEEEECCCS------TTGGGSCGGGTCSSS
T ss_pred c--cccCCCCEEECcCCcccCcCChHHh--cCcCCCEEECcCCcccccCCCC------ccccccChHHhcCCC
Confidence 1 11368999999998887 7888887 8999999999999988665532 246677777777775
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=243.56 Aligned_cols=248 Identities=16% Similarity=0.073 Sum_probs=128.9
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCc-------------eeeecCCcccCCCChhhhccCCCCCEEEcCCc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRI-------------ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW 481 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L-------------~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n 481 (801)
.+.+++++++|++|++++|++.+..|..+..+.+| +.|.+.++.+.+++. -.++|++|+|++|
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n 101 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCN 101 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS----CCTTCSEEECCSS
T ss_pred CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC----CcCCCCEEEccCC
Confidence 45578899999999999999999888888776654 778888887777543 1367778888877
Q ss_pred ccCCCC-----CCcccccchhhhHhhcCC-cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCC
Q 045877 482 QSTVDD-----IPHIEIESTDYLKGLKNM-KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKS 555 (801)
Q Consensus 482 ~l~~~~-----~~~~~~~~~~lp~~l~~l-~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~ 555 (801)
.+++.. +..+.+....+ ..+..+ ++|++|+|++|.+. .+| .++++++|++|++++|.+.+ +|..+ .+
T Consensus 102 ~l~~lp~~~~~L~~L~l~~n~l-~~l~~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~ 174 (454)
T 1jl5_A 102 SLTELPELPQSLKSLLVDNNNL-KALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PS 174 (454)
T ss_dssp CCSSCCCCCTTCCEEECCSSCC-SCCCSCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TT
T ss_pred cCCccccccCCCcEEECCCCcc-CcccCCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc-cCCCc---cc
Confidence 775421 00000000000 001111 35566666655433 255 35556666666666654332 44322 35
Q ss_pred CCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhc
Q 045877 556 LTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLA 635 (801)
Q Consensus 556 L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~ 635 (801)
|++|++++|.+.+ +| .++.+++|++|+ +++|. ...++.. ..+|++|++++|.+... + .+..
T Consensus 175 L~~L~L~~n~l~~-l~-~~~~l~~L~~L~---l~~N~-------l~~l~~~---~~~L~~L~l~~n~l~~l---p-~~~~ 235 (454)
T 1jl5_A 175 LEFIAAGNNQLEE-LP-ELQNLPFLTAIY---ADNNS-------LKKLPDL---PLSLESIVAGNNILEEL---P-ELQN 235 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEE---CCSSC-------CSSCCCC---CTTCCEEECCSSCCSSC---C-CCTT
T ss_pred ccEEECcCCcCCc-Cc-cccCCCCCCEEE---CCCCc-------CCcCCCC---cCcccEEECcCCcCCcc---c-ccCC
Confidence 6666666665544 44 455666666665 55554 2222221 13566666666655522 2 3566
Q ss_pred ccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCC
Q 045877 636 FKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKL 703 (801)
Q Consensus 636 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~l 703 (801)
+++|+.|++++|.+.+.... ...++.|+...+.+..+. ..+++|+.|++++|.+..+
T Consensus 236 l~~L~~L~l~~N~l~~l~~~----------~~~L~~L~l~~N~l~~l~-~~~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTLPDL----------PPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CTTCCEEECCSSCCSSCCSC----------CTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEE
T ss_pred CCCCCEEECCCCcCCccccc----------ccccCEEECCCCcccccC-cccCcCCEEECcCCccCcc
Confidence 66677777776666543210 123444444444443322 2235566666665555443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-26 Score=242.93 Aligned_cols=253 Identities=17% Similarity=0.110 Sum_probs=219.8
Q ss_pred cccccccccchhhcc--hhhhhhccccCceeeecCC-cccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 423 KKLFNFSLSLEEIEN--KAKDCAMKRGRIETLFNVS-EEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~--~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
.+++.|+|++|+|++ ..|..+..+++|++|.+.+ |.+....+..|.++++|++|+|++|.+++ .+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-----------AIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-----------ECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-----------cCC
Confidence 578999999999999 8899999999999999994 99998889999999999999999999852 557
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCC-CCCEEcccCCccccCCCcccCCCC
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLK-SLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~-~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
..|.++++|++|+|++|.+.+.+|..++.+++|++|+|++|.+.+.+|..++.+. +|++|++++|.+.+.+|..+..+.
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 8899999999999999988889999999999999999999988889999999998 999999999999999999999997
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPE 658 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 658 (801)
|++|+ +++|. + ....+..+..+++|+.|+|++|.+.+.. ..+..+++|++|+|++|.+.+..+..
T Consensus 199 -L~~L~---Ls~N~-----l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~-- 263 (313)
T 1ogq_A 199 -LAFVD---LSRNM-----L-EGDASVLFGSDKNTQKIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNRIYGTLPQG-- 263 (313)
T ss_dssp -CSEEE---CCSSE-----E-EECCGGGCCTTSCCSEEECCSSEECCBG---GGCCCCTTCCEEECCSSCCEECCCGG--
T ss_pred -ccEEE---CcCCc-----c-cCcCCHHHhcCCCCCEEECCCCceeeec---CcccccCCCCEEECcCCcccCcCChH--
Confidence 99998 88887 1 1245678999999999999999987664 44788999999999999988654321
Q ss_pred CCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCc-CCCCC
Q 045877 659 PQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGR-LNSLE 729 (801)
Q Consensus 659 ~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~-l~~~~ 729 (801)
... .++|+.|+|++|.+. .+|.. . .+++|+.|++++|. +.+.+
T Consensus 264 ------------------------l~~-l~~L~~L~Ls~N~l~~~ip~~-~--~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 264 ------------------------LTQ-LKFLHSLNVSFNNLCGEIPQG-G--NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ------------------------GGG-CTTCCEEECCSSEEEEECCCS-T--TGGGSCGGGTCSSSEEESTT
T ss_pred ------------------------Hhc-CcCCCEEECcCCcccccCCCC-c--cccccChHHhcCCCCccCCC
Confidence 122 368999999999876 67765 4 89999999999998 66544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-24 Score=239.78 Aligned_cols=259 Identities=15% Similarity=0.010 Sum_probs=167.5
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCC-------------CEEEcCCcccCCCC
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKI-------------KVLYLGRWQSTVDD 487 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L-------------~~L~Ls~n~l~~~~ 487 (801)
+.+.|++|++++|+| +.+|..+..+++|++|++.+|.+.+..|..++++++| +.|++++|.+++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 357899999999999 7888899999999999999999988888888888764 9999999998542
Q ss_pred CCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 488 IPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 488 ~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
|. -.++|++|++++|.+.+ +|.. +.+|++|++++|.+.+ +|.. .++|++|++++|.+.
T Consensus 87 -----------p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 87 -----------PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp -----------CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred -----------CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 22 13689999999986655 7753 4789999999986543 3332 268999999999987
Q ss_pred cCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeecc
Q 045877 568 DGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWG 647 (801)
Q Consensus 568 ~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n 647 (801)
+ +| .|+.+++|++|+ +++|. ...++.. ..+|++|++++|.+.+. + .+.++++|+.|++++|
T Consensus 145 ~-lp-~~~~l~~L~~L~---l~~N~-------l~~lp~~---~~~L~~L~L~~n~l~~l---~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIID---VDNNS-------LKKLPDL---PPSLEFIAAGNNQLEEL---P-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp S-CC-CCTTCTTCCEEE---CCSSC-------CSCCCCC---CTTCCEEECCSSCCSSC---C-CCTTCTTCCEEECCSS
T ss_pred C-Cc-ccCCCCCCCEEE---CCCCc-------CcccCCC---cccccEEECcCCcCCcC---c-cccCCCCCCEEECCCC
Confidence 5 77 589999999998 88887 4444443 35899999999988763 3 5788999999999999
Q ss_pred CCCCCCCCCCCCCCCccchhchhhhhccccccccc--ccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcC
Q 045877 648 GGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER--SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRL 725 (801)
Q Consensus 648 ~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~--~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l 725 (801)
.+.+.... ...++.|+...+.+..+ ... .++|+.|++++|.+..+|.. +++|++|++++|.+
T Consensus 206 ~l~~l~~~----------~~~L~~L~l~~n~l~~lp~~~~-l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 206 SLKKLPDL----------PLSLESIVAGNNILEELPELQN-LPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYL 269 (454)
T ss_dssp CCSSCCCC----------CTTCCEEECCSSCCSSCCCCTT-CTTCCEEECCSSCCSSCCSC-----CTTCCEEECCSSCC
T ss_pred cCCcCCCC----------cCcccEEECcCCcCCcccccCC-CCCCCEEECCCCcCCccccc-----ccccCEEECCCCcc
Confidence 88864321 12445555444433322 112 36888999988888777753 35677777777776
Q ss_pred CCCCCCccccccee
Q 045877 726 NSLEGSEWETVKVL 739 (801)
Q Consensus 726 ~~~~~~~f~~L~~l 739 (801)
++++. .+++|+.+
T Consensus 270 ~~l~~-~~~~L~~L 282 (454)
T 1jl5_A 270 TDLPE-LPQSLTFL 282 (454)
T ss_dssp SCCCC-CCTTCCEE
T ss_pred cccCc-ccCcCCEE
Confidence 66543 23344444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=227.70 Aligned_cols=267 Identities=15% Similarity=0.100 Sum_probs=213.7
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|+.|+|++|+|.++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++ .+|..+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~l~~~~ 121 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV------------EIPPNL 121 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC------------SCCSSC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC------------ccCccc
Confidence 57899999999999999999999999999999999999999999999999999999999985 334444
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCC--CCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNL--DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~--~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
. ++|++|+|++|.+.+..+..++.+++|++|++++|.+. +..|..+..+ +|++|++++|.+.+ +|..+. ++|
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L 195 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETL 195 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSC
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCC
Confidence 3 79999999998766555567999999999999999774 3677888888 99999999999775 676554 789
Q ss_pred cccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
++|+ +++|. ....+ ..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.....
T Consensus 196 ~~L~---l~~n~-------i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~lp~----- 258 (332)
T 2ft3_A 196 NELH---LDHNK-------IQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNNKLSRVPA----- 258 (332)
T ss_dssp SCCB---CCSSC-------CCCCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSSCCCBCCT-----
T ss_pred CEEE---CCCCc-------CCccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCCcCeecCh-----
Confidence 9998 88887 33343 67999999999999999998776 6688999999999999998874321
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCC-----CCCCccEEEeeCCcCC--CCCCCc
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPY-----SFKNLKNLYIRGGRLN--SLEGSE 732 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~-----~l~~L~~L~L~~n~l~--~~~~~~ 732 (801)
.... .++|+.|+|++|.++.++...+.. ..+.|+.|++++|.+. ++.+..
T Consensus 259 ----------------------~l~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 259 ----------------------GLPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp ----------------------TGGG-CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred ----------------------hhhc-CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 1112 378999999999998887654311 2578999999999977 555555
Q ss_pred ccccceeccccccccccccc
Q 045877 733 WETVKVLRLKYLNELKIDWK 752 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n 752 (801)
| ..+.+|+.+++++|
T Consensus 316 ~-----~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 316 F-----RCVTDRLAIQFGNY 330 (332)
T ss_dssp G-----TTBCCSTTEEC---
T ss_pred c-----cccchhhhhhcccc
Confidence 5 34455555555544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=224.51 Aligned_cols=268 Identities=13% Similarity=0.092 Sum_probs=215.9
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
+.|+.|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++ .+|..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------~l~~~~ 119 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK------------ELPEKM 119 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS------------BCCSSC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC------------ccChhh
Confidence 57899999999999999999999999999999999999999999999999999999999985 233333
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC--CCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD--KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~--~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.+. .+|..+. ++|
T Consensus 120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L 194 (330)
T 1xku_A 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSL 194 (330)
T ss_dssp C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTC
T ss_pred c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccC
Confidence 3 799999999997777667789999999999999997743 67788999999999999999976 4666554 789
Q ss_pred cccccccccCCcchhhhhhccc-CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~-~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
++|+ +++|. ... .+..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.....
T Consensus 195 ~~L~---l~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~lp~----- 257 (330)
T 1xku_A 195 TELH---LDGNK-------ITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNKLVKVPG----- 257 (330)
T ss_dssp SEEE---CTTSC-------CCEECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSCCSSCCT-----
T ss_pred CEEE---CCCCc-------CCccCHHHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCcCccCCh-----
Confidence 9998 88887 333 3568999999999999999998776 5678999999999999998874321
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCC-----CCCCCccEEEeeCCcCCC--CCCCc
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHP-----YSFKNLKNLYIRGGRLNS--LEGSE 732 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~-----~~l~~L~~L~L~~n~l~~--~~~~~ 732 (801)
.... .++|+.|+|++|.+..++...+. ...+.|+.|++++|.+.. +.+..
T Consensus 258 ----------------------~l~~-l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 258 ----------------------GLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp ----------------------TTTT-CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred ----------------------hhcc-CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 1112 36899999999999988865431 134789999999999764 44445
Q ss_pred ccccceeccccccccccccc
Q 045877 733 WETVKVLRLKYLNELKIDWK 752 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n 752 (801)
| ..+..++.++++.|
T Consensus 315 f-----~~~~~l~~l~L~~N 329 (330)
T 1xku_A 315 F-----RCVYVRAAVQLGNY 329 (330)
T ss_dssp G-----TTCCCGGGEEC---
T ss_pred c-----ccccceeEEEeccc
Confidence 5 34555666666555
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-24 Score=233.28 Aligned_cols=272 Identities=13% Similarity=0.067 Sum_probs=128.2
Q ss_pred ccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcC
Q 045877 428 FSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKE 507 (801)
Q Consensus 428 L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~ 507 (801)
.++++|+++.++...+ .+|+.|.+.+|.+..+++..|.++++|++|+|++|.++. ..+..|.++++
T Consensus 36 c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~ 101 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-----------IEEDSFSSLGS 101 (353)
T ss_dssp EECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTT
T ss_pred eeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-----------cCHhhcCCCCC
Confidence 3445555554433222 245555555555555555555555556666665555532 11334555555
Q ss_pred CceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc--cccCCCCCCEEcccCCc-cccCCCcccCCCCcccccc
Q 045877 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECF-LLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 508 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~--~~~~L~~L~~L~Ls~n~-l~~~~p~~~~~L~~L~~L~ 584 (801)
|++|+|++|.+.+..+..++++++|++|+|++|.+. .+|. .+..+++|++|++++|. +....+..|+.+++|++|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 666666555433322233555556666666555333 2332 45555556666665553 3333344555555555555
Q ss_pred cccccCCcchhhhhhcc-cCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC--C
Q 045877 585 GFVISDHAEDDRRWKRW-CSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ--T 661 (801)
Q Consensus 585 ~~~l~~n~~~~~~~~~~-~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--~ 661 (801)
+++|. .. ..+..+..+++|++|++++|.+.... ...+..+++|+.|++++|.+.+......... .
T Consensus 181 ---l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 181 ---IDASD-------LQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp ---EEETT-------CCEECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred ---CCCCC-------cCccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEECCCCcccccccccccccccc
Confidence 44444 11 12445555556666666666554332 2233445566666666665554332211000 0
Q ss_pred Cccchhchhhhhccccc---ccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCC
Q 045877 662 GRKDNFFIKTLTKFRTR---VTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSL 728 (801)
Q Consensus 662 ~~~~~~~l~~L~~~~~~---l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~ 728 (801)
.......++.+....+. ++..... .++|+.|+|++|.+..+|.+++ ..+++|++|+|++|.+.+.
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~~i~~~~~-~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLKSVPDGIF-DRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCBCCC
T ss_pred chhhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCCccCHHHH-hcCCCCCEEEeeCCCccCc
Confidence 00000000000000000 1111112 2466666666666666666542 3666666666666665543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=244.01 Aligned_cols=348 Identities=18% Similarity=0.118 Sum_probs=219.7
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|.++++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+++..|.++++|++|+|++|+++...
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~-------- 140 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-------- 140 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST--------
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC--------
Confidence 457899999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCc-cCchhhcCCCCCCEEeccCCCCCCCCcccccCCCC-------------------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQ-ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKS------------------- 555 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~-~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~------------------- 555 (801)
+..|+++++|++|+|++|.+.. .+|..++.+++|++|+|++|.+.+..+..+..+.+
T Consensus 141 ---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~ 217 (635)
T 4g8a_A 141 ---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 217 (635)
T ss_dssp ---TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred ---hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccC
Confidence 3458899999999999987654 46788899999999999998766554443332221
Q ss_pred --------------------------------------------------------------------------------
Q 045877 556 -------------------------------------------------------------------------------- 555 (801)
Q Consensus 556 -------------------------------------------------------------------------------- 555 (801)
T Consensus 218 ~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 297 (635)
T 4g8a_A 218 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG 297 (635)
T ss_dssp TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEE
T ss_pred cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc
Confidence
Q ss_pred --------------------------------CCEEcccCCccccCCCc-------------------ccCCCCcccccc
Q 045877 556 --------------------------------LTHLDISECFLLDGIPK-------------------KLSLLSKLQVLK 584 (801)
Q Consensus 556 --------------------------------L~~L~Ls~n~l~~~~p~-------------------~~~~L~~L~~L~ 584 (801)
|++|++.+|.+....+. ....+++|+.|+
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 298 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 377 (635)
T ss_dssp CTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEE
T ss_pred hhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccch
Confidence 22222222222111100 011234444444
Q ss_pred cccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCcc
Q 045877 585 GFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRK 664 (801)
Q Consensus 585 ~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 664 (801)
++.|.... ....+..+..+.+|+.|++..+..... ...+..+++|+.+++..+......+.....
T Consensus 378 ---ls~n~l~~----~~~~~~~~~~~~~L~~L~~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~----- 442 (635)
T 4g8a_A 378 ---LSRNGLSF----KGCCSQSDFGTISLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFL----- 442 (635)
T ss_dssp ---CCSSCCBE----EEECCHHHHSCSCCCEEECCSCSEEEE---CSCCTTCTTCCEEECTTSEEESTTSSCTTT-----
T ss_pred ---hhcccccc----ccccccchhhhhhhhhhhccccccccc---cccccccccccchhhhhccccccccccccc-----
Confidence 55554100 112233455667777777777765443 234556667777777665544332211100
Q ss_pred chhchhhhhcccccccccc---cccCCCccEEEccCCCCC--CCCcccCCCCCCCccEEEeeCCcCCCCCCCccccccee
Q 045877 665 DNFFIKTLTKFRTRVTERS---QHVESKLEKLDFQCFPDE--KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVL 739 (801)
Q Consensus 665 ~~~~l~~L~~~~~~l~~~~---~~~~~~L~~L~L~~n~~~--~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l 739 (801)
....+..++...+.+.... ....+.|+.|+|++|... ..|..+. .+++|++|+|++|+|+++++..| -
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~N~L~~l~~~~f-----~ 515 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAF-----N 515 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTSCCCEECTTTT-----T
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh--hccccCEEECCCCccCCcChHHH-----c
Confidence 1112222222222222111 112357778888776432 2455554 77788888888888877777666 3
Q ss_pred cccccccccccccccc-------CcCCCCceeeccCCCCCcccCCCCCccccc-CCcceEeCCCcccc
Q 045877 740 RLKYLNELKIDWKGLQ-------ELFPKLEYLEKFKCHKVTLCPCDGYGIWEK-SDLINLNNSKQQHR 799 (801)
Q Consensus 740 ~L~~L~~L~l~~n~l~-------~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~-~~L~~LdlS~~~~~ 799 (801)
.+.+|+.|+|++|.++ +.+++|+.|+++++ +++.++. ..+..+ ++|++|||++|.+.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKK--QELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCS--SCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCH--HHHHhhhCcCCEEEeeCCCCc
Confidence 4566677777777665 23456666666665 4555443 244455 57888888888764
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-23 Score=220.53 Aligned_cols=178 Identities=19% Similarity=0.189 Sum_probs=96.1
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
.+++.|.+.+|.+..+++ .+.++++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..+
T Consensus 81 ~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~------------~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l 146 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLM------------ELPDTMQQFAGLETLTLARNPLR-ALPASI 146 (328)
T ss_dssp TTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCC------------CCCSCGGGGTTCSEEEEESCCCC-CCCGGG
T ss_pred cceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCcc------------chhHHHhccCCCCEEECCCCccc-cCcHHH
Confidence 345555555555554332 2444666666666666552 33445556666666666665433 556566
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccC---------CCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhh
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGK---------LKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRR 597 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~---------L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~ 597 (801)
+++++|++|+|++|+..+.+|..++. +++|++|++++|.+. .+|..++.+++|++|+ +++|.
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~---L~~N~----- 217 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK---IRNSP----- 217 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEE---EESSC-----
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEE---ccCCC-----
Confidence 66666666666665566666555443 555566665555544 4555555555555555 45554
Q ss_pred hhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 598 WKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 598 ~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
...++..++.+++|++|+|++|.+.+.. +..+.++++|+.|+|++|.+.+
T Consensus 218 --l~~l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 218 --LSALGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp --CCCCCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCC
T ss_pred --CCcCchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchh
Confidence 3334444555555555555555544443 4445555555555555554443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-23 Score=218.29 Aligned_cols=252 Identities=16% Similarity=0.100 Sum_probs=202.0
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK 506 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~ 506 (801)
.++.+++.++.++...+ ++++.|.+.+|.+..+++..|.++++|++|+|++|.++.. ...+..+..++
T Consensus 11 ~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~~~ 78 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSDFGTT 78 (306)
T ss_dssp EEECCSSCCSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHHHSCS
T ss_pred EEEcCCCCcccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------cCccccccccc
Confidence 46677777766654332 5789999999999999888899999999999999988531 12356677899
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc-ccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
+|++|+|++|. +..+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 79 ~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~- 156 (306)
T 2z66_A 79 SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK- 156 (306)
T ss_dssp CCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE-
T ss_pred ccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE-
Confidence 99999999984 55788889999999999999997665544 5789999999999999999888888899999999999
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccc
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKD 665 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 665 (801)
+++|. +.....+..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+.....
T Consensus 157 --l~~n~-----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~--------- 218 (306)
T 2z66_A 157 --MAGNS-----FQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFP--------- 218 (306)
T ss_dssp --CTTCE-----EGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSGG---------
T ss_pred --CCCCc-----cccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChhh---------
Confidence 88887 222235778999999999999999998776 678899999999999999987643211
Q ss_pred hhchhhhhcccccccccccccCCCccEEEccCCCCCCCC-cccCCCCC-CCccEEEeeCCcCCCCCC
Q 045877 666 NFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLP-SWVHPYSF-KNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 666 ~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp-~~l~~~~l-~~L~~L~L~~n~l~~~~~ 730 (801)
... .++|+.|+|++|.+...+ ..+. .+ ++|++|+|++|.+++...
T Consensus 219 -----------------~~~-l~~L~~L~L~~N~l~~~~~~~~~--~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 219 -----------------YKC-LNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp -----------------GTT-CTTCCEEECTTSCCCBCSSSSCC--CCCTTCCEEECTTCCEECSGG
T ss_pred -----------------ccC-cccCCEeECCCCCCcccCHHHHH--hhhccCCEEEccCCCeecccC
Confidence 111 368999999999887654 4444 67 499999999999877643
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=227.29 Aligned_cols=231 Identities=18% Similarity=0.115 Sum_probs=173.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|++|++++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++... +..+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-----------SSWF 120 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-----------HHHH
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-----------HhHh
Confidence 47888899999988888888888888999998888888888888888889999999988885321 3447
Q ss_pred cCCcCCceEeecCCCCCccCch--hhcCCCCCCEEeccCCCC-CCCCcccccCCCCCCEEcccCCccccCCCcccCCCCc
Q 045877 503 KNMKELRLLSLQGMSGIQELPS--EISYLTSLEILDLRACYN-LDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~--~i~~L~~L~~L~Ls~n~~-~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~ 579 (801)
.++++|++|+|++|.+ ..+|. .++.+++|++|++++|.. ....+..++++++|++|++++|.+.+..|..++.+++
T Consensus 121 ~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp TTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 8888899999988754 45554 678888999999988853 4444567888888999999988888877888888888
Q ss_pred ccccccccccCCcchhhhhhcccCcc-cccCCccCCeeEeeccccccccc-----------------------------C
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLK-DLEKLEHLRKLTININSEKFQTE-----------------------------N 629 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~-~l~~L~~L~~L~L~~n~~~~~~~-----------------------------~ 629 (801)
|++|+ +++|. ....+. .+..+++|+.|++++|.+..... .
T Consensus 200 L~~L~---l~~n~-------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 200 VSHLI---LHMKQ-------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp EEEEE---EECSC-------STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CCeec---CCCCc-------cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 88888 77776 333333 23457788888888887765320 1
Q ss_pred hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC
Q 045877 630 LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK 702 (801)
Q Consensus 630 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~ 702 (801)
+..+..+++|+.|++++|.+....... ... .++|++|+|++|.+..
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~--------------------------~~~-l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGI--------------------------FDR-LTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTT--------------------------TTT-CTTCCEEECCSSCBCC
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHH--------------------------Hhc-CCCCCEEEeeCCCccC
Confidence 345677888888888888877433211 112 3789999999997653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=218.70 Aligned_cols=209 Identities=21% Similarity=0.197 Sum_probs=147.4
Q ss_pred cCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc
Q 045877 469 KLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD 548 (801)
Q Consensus 469 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~ 548 (801)
....++.|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|.
T Consensus 79 ~~~~l~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~ 144 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP------------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA 144 (328)
T ss_dssp TSTTCCEEEEESSCCS------------SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG
T ss_pred cccceeEEEccCCCch------------hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH
Confidence 3578999999999984 55777888999999999998665 89999999999999999999766 8899
Q ss_pred cccCCCCCCEEcccCCccccCCCcccCC---------CCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEee
Q 045877 549 EIGKLKSLTHLDISECFLLDGIPKKLSL---------LSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTIN 619 (801)
Q Consensus 549 ~~~~L~~L~~L~Ls~n~l~~~~p~~~~~---------L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~ 619 (801)
.++++++|++|++++|.+.+.+|..++. +++|++|+ +++|. ...++..++.+++|++|+|+
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~---L~~n~-------l~~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR---LEWTG-------IRSLPASIANLQNLKSLKIR 214 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE---EEEEC-------CCCCCGGGGGCTTCCEEEEE
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE---CcCCC-------cCcchHhhcCCCCCCEEEcc
Confidence 9999999999999999999999887654 66666666 55555 33455556666666666666
Q ss_pred cccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCC-
Q 045877 620 INSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCF- 698 (801)
Q Consensus 620 ~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n- 698 (801)
+|.+.+. +..+..+++|+.|+|++|.+.+..+..+ .. .++|+.|+|++|
T Consensus 215 ~N~l~~l---~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--------------------------~~-l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 215 NSPLSAL---GPAIHHLPKLEELDLRGCTALRNYPPIF--------------------------GG-RAPLKRLILKDCS 264 (328)
T ss_dssp SSCCCCC---CGGGGGCTTCCEEECTTCTTCCBCCCCT--------------------------TC-CCCCCEEECTTCT
T ss_pred CCCCCcC---chhhccCCCCCEEECcCCcchhhhHHHh--------------------------cC-CCCCCEEECCCCC
Confidence 6666543 3346666666666666666554433211 11 245666666653
Q ss_pred CCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcc
Q 045877 699 PDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEW 733 (801)
Q Consensus 699 ~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f 733 (801)
....+|.++. .+++|++|+|++|.+.+..+..+
T Consensus 265 ~~~~~p~~~~--~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 265 NLLTLPLDIH--RLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp TCCBCCTTGG--GCTTCCEEECTTCTTCCCCCGGG
T ss_pred chhhcchhhh--cCCCCCEEeCCCCCchhhccHHH
Confidence 3444555554 66666666666666555555444
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-24 Score=249.95 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=143.3
Q ss_pred CCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhccCCccch
Q 045877 91 ISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQATGSKSVQ 167 (801)
Q Consensus 91 ~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (801)
.|++|+||||.+.++..++....+|+|++|+.+| ||.++||....
T Consensus 264 ~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-------------------------------- 311 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-------------------------------- 311 (549)
T ss_dssp TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---------------------------------
T ss_pred CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--------------------------------
Confidence 6899999999999998776455789999999998 88877665321
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCCcc---cCCCCCchhHHhhhc--cCCCCCCCCccccccccchhHHHHHHhhhccC-
Q 045877 168 EVETLQDEIRRISQKFLNLKSKIPPVN---SSSSDDSDAQQRRRI--NQSKDLPNMADKTRFKEHDFFIEFKKIFQSLG- 241 (801)
Q Consensus 168 ~~~~~~~~~~~~~~~i~~kc~GlPlai---~~~l~~~~~~~W~~~--l~~~~~~~~~~~~~~~~~~i~~~L~~SYd~L~- 241 (801)
++++.+++++|+++|+|+|||| |..+..+ .|+.+ +... ... ....+|..+|++||++||
T Consensus 312 -----~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~~~l~~~-l~~------~~~~~i~~~l~~Sy~~L~~ 376 (549)
T 2a5y_B 312 -----GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKMAQLNNK-LES------RGLVGVECITPYSYKSLAM 376 (549)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHHHHHHHH-HHH------HCSSTTCCCSSSSSSSHHH
T ss_pred -----chhHHHHHHHHHHHhCCChHHHHHHHHHhccc---hHHHHHHhHHH-hhc------ccHHHHHHHHhcccccccH
Confidence 2568889999999999999995 3333333 34432 2211 000 011348889999999999
Q ss_pred CCccccc-----------eecccCCCceechhhHHHHHHHc--CCCcccccCCCChHHHHHHHHHHHHhcCccccccccc
Q 045877 242 NDQSCLL-----------CFAVFPENAVIKKRLLVNWWIGE--GFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKH 308 (801)
Q Consensus 242 ~~K~cFl-----------~~a~Fp~~~~i~~~~Li~~wia~--g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~ 308 (801)
++|.||+ |||+||+++.|+ |++|+|+ ||+.....+ .+.+++++ ||++|+++|||+....+
T Consensus 377 ~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~-~~~~~~~~-~l~~L~~rsLl~~~~~~- 449 (549)
T 2a5y_B 377 ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE-QLDDEVAD-RLKRLSKRGALLSGKRM- 449 (549)
T ss_dssp HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C-CCTHHHHH-HHHHTTTBSSCSEEECS-
T ss_pred HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCC-CCHHHHHH-HHHHHHHcCCeeEecCC-
Confidence 9999999 999999999999 8999999 999876533 78899998 99999999999987653
Q ss_pred CCccceEEechhHHHHHHHHhhcCCc
Q 045877 309 RGVANSFRMSPLVRSAVITLAKENNF 334 (801)
Q Consensus 309 ~~~~~~~~mHdlv~dl~~~~a~~e~f 334 (801)
...+|+|||+|||+|+.++.++++
T Consensus 450 --~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 450 --PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp --SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred --CceEEEeChHHHHHHHHHHHHHHH
Confidence 345899999999999999987654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=222.99 Aligned_cols=245 Identities=16% Similarity=0.112 Sum_probs=159.5
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK 506 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~ 506 (801)
.++.+++.++.++.... ..++.|.+.+|.+..+.+..|.++++|++|+|++|.++.. .+..|.+++
T Consensus 47 ~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-----------~~~~~~~l~ 112 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-----------EIGAFNGLA 112 (440)
T ss_dssp EEECCSCCCSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-----------CGGGGTTCS
T ss_pred EEEeCCCCcCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-----------ChhhccCCc
Confidence 34455555554443222 4566677777777776667777777777777777766421 245666777
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc-ccCCCCccccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK-KLSLLSKLQVLKG 585 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~~L~~ 585 (801)
+|++|+|++|.+....+..|..+++|++|+|++|.+....+..|.++++|++|++++|...+.++. .|..+++|++|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~- 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN- 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE-
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec-
Confidence 777777777654443344567777777777777765555555667777777777777544444443 466777777777
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccc
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKD 665 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 665 (801)
+++|. ...+ ..+..+++|+.|+|++|.+.... +..|.++++|+.|+|++|.+.+..+..+
T Consensus 192 --L~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------- 251 (440)
T 3zyj_A 192 --LAMCN-------LREI-PNLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQVIERNAF-------- 251 (440)
T ss_dssp --CTTSC-------CSSC-CCCTTCSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTSS--------
T ss_pred --CCCCc-------Cccc-cccCCCcccCEEECCCCccCccC--hhhhccCccCCEEECCCCceeEEChhhh--------
Confidence 66666 3323 34677777888888888777665 6677778888888888887765433221
Q ss_pred hhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC
Q 045877 666 NFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 666 ~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~ 726 (801)
.. .++|+.|+|++|.+..+|...+ ..+++|+.|+|++|.+.
T Consensus 252 ------------------~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 252 ------------------DN-LQSLVEINLAHNNLTLLPHDLF-TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ------------------TT-CTTCCEEECTTSCCCCCCTTTT-SSCTTCCEEECCSSCEE
T ss_pred ------------------cC-CCCCCEEECCCCCCCccChhHh-ccccCCCEEEcCCCCcc
Confidence 11 2578888888887777776544 47788888888888754
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=223.24 Aligned_cols=246 Identities=18% Similarity=0.099 Sum_probs=156.5
Q ss_pred ccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcC
Q 045877 428 FSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKE 507 (801)
Q Consensus 428 L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~ 507 (801)
++.+++.++.++... ..+++.|.+.+|.+..+.+..|.++++|++|+|++|.++.. .+..|.++++
T Consensus 59 v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----------~~~~~~~l~~ 124 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-----------EVGAFNGLAS 124 (452)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTCTT
T ss_pred EEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-----------ChhhccCccc
Confidence 444444454433222 14566666666666666666677777777777777766421 2355666777
Q ss_pred CceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc-ccCCCCcccccccc
Q 045877 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK-KLSLLSKLQVLKGF 586 (801)
Q Consensus 508 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~~L~~~ 586 (801)
|++|+|++|.+....+..+..+++|++|+|++|.+....+..|.++++|++|++++|...+.++. .|..+++|++|+
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~-- 202 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN-- 202 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE--
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE--
Confidence 77777777654444444566677777777777665544445666677777777776544444443 466677777776
Q ss_pred cccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccch
Q 045877 587 VISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDN 666 (801)
Q Consensus 587 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 666 (801)
+++|. .... ..+..+++|+.|+|++|.+.... +..|.++++|+.|+|++|.+.+..+..+
T Consensus 203 -L~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------- 262 (452)
T 3zyi_A 203 -LGMCN-------IKDM-PNLTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSLIERNAF--------- 262 (452)
T ss_dssp -CTTSC-------CSSC-CCCTTCTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTTSCCCEECTTTT---------
T ss_pred -CCCCc-------cccc-ccccccccccEEECcCCcCcccC--cccccCccCCCEEEeCCCcCceECHHHh---------
Confidence 66665 2222 35667777888888888777665 6677788888888888887765433221
Q ss_pred hchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCC
Q 045877 667 FFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSL 728 (801)
Q Consensus 667 ~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~ 728 (801)
.. .++|+.|+|++|.+..+|...+ ..+++|+.|+|++|.+...
T Consensus 263 -----------------~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 263 -----------------DG-LASLVELNLAHNNLSSLPHDLF-TPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp -----------------TT-CTTCCEEECCSSCCSCCCTTSS-TTCTTCCEEECCSSCEECS
T ss_pred -----------------cC-CCCCCEEECCCCcCCccChHHh-ccccCCCEEEccCCCcCCC
Confidence 11 2578888888887777776544 4778888888888875443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-23 Score=221.66 Aligned_cols=253 Identities=15% Similarity=0.087 Sum_probs=131.2
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCC-Chhhhc-------cCCCCCEEEcCCcccCCCCCCc
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEF-KYDWFS-------KLEKIKVLYLGRWQSTVDDIPH 490 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~f~-------~l~~L~~L~Ls~n~l~~~~~~~ 490 (801)
+...++|+.|++++|.+ ..|..+... ++.|.+.+|.+... .+..+. ++++|++|+|++|.+++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----- 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG----- 109 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS-----
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc-----
Confidence 45667778888887777 333333222 55556666555321 122222 45556666666665532
Q ss_pred ccccchhhhHhh--cCCcCCceEeecCCCCCccCchhhcCC-----CCCCEEeccCCCCCCCCcccccCCCCCCEEcccC
Q 045877 491 IEIESTDYLKGL--KNMKELRLLSLQGMSGIQELPSEISYL-----TSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563 (801)
Q Consensus 491 ~~~~~~~lp~~l--~~l~~L~~L~Ls~n~~~~~lp~~i~~L-----~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~ 563 (801)
.+|..+ ..+++|++|+|++|.+.+. |..++.+ ++|++|+|++|.+.+..|..|+++++|++|++++
T Consensus 110 ------~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 110 ------TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp ------CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred ------hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC
Confidence 123332 5555566666665544333 5445444 5555555555555444445555555555555555
Q ss_pred CccccC--CCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC-hhhhhcccCCc
Q 045877 564 CFLLDG--IPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN-LSTVLAFKRLL 640 (801)
Q Consensus 564 n~l~~~--~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~-~~~l~~l~~L~ 640 (801)
|++.+. ++..+ .++.+++|++|++++|.+...... ...+.++++|+
T Consensus 183 N~l~~~~~~~~~~-------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 183 NPELGERGLISAL-------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp CTTCHHHHHHHHS-------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred CCcCcchHHHHHH-------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 554332 11111 124556666666666665532111 12334556666
Q ss_pred EEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEe
Q 045877 641 QLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYI 720 (801)
Q Consensus 641 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L 720 (801)
.|++++|.+.+..+... . ...++|+.|+|++|.++.+|.++. ++|++|+|
T Consensus 232 ~L~Ls~N~l~~~~~~~~------------------------~--~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~L 281 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPS------------------------C--DWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDL 281 (312)
T ss_dssp EEECTTSCCCSSCCCSC------------------------C--CCCTTCCEEECTTSCCSSCCSSCC----SEEEEEEC
T ss_pred EEECCCCcCCcccchhh------------------------h--hhcCCCCEEECCCCccChhhhhcc----CCceEEEC
Confidence 66666666655332100 0 012466666666666666666543 56666666
Q ss_pred eCCcCCCCCCCcccccceecccccccccccccccc
Q 045877 721 RGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 721 ~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
++|+|++++. + ..+++|+.|++++|.++
T Consensus 282 s~N~l~~~p~--~-----~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 282 SYNRLDRNPS--P-----DELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSSCCCSCCC--T-----TTSCEEEEEECTTCTTT
T ss_pred CCCCCCCChh--H-----hhCCCCCEEeccCCCCC
Confidence 6666666632 3 24455666666666554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=212.94 Aligned_cols=230 Identities=17% Similarity=0.051 Sum_probs=195.8
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCC--hhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFK--YDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
++|++|+|++|+|+.+.+..|..+++|+.|.+.+|.+..+. +..+.++++|++|+|++|.++ .++.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~------------~l~~ 95 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------------TMSS 95 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE------------EEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc------------cChh
Confidence 57899999999999988888999999999999999987553 566778999999999999983 4567
Q ss_pred hhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcccc-CCCcccCCCC
Q 045877 501 GLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLD-GIPKKLSLLS 578 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~-~~p~~~~~L~ 578 (801)
.+..+++|++|+|++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..++
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 78999999999999986554433 578999999999999998888888889999999999999999876 6888999999
Q ss_pred cccccccccccCCcchhhhhhcccC-cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCS-LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~-~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
+|++|+ +++|. .... +..+..+++|++|++++|.+.... ...+..+++|+.|++++|.+.+..+..+
T Consensus 176 ~L~~L~---Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 176 NLTFLD---LSQCQ-------LEQLSPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp TCCEEE---CTTSC-------CCEECTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred CCCEEE---CCCCC-------cCCcCHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCCcccCHHHH
Confidence 999999 88887 3333 568899999999999999998766 5678899999999999999987654322
Q ss_pred CCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC
Q 045877 658 EPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK 702 (801)
Q Consensus 658 ~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~ 702 (801)
..++++|+.|+|++|.+.-
T Consensus 244 --------------------------~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 244 --------------------------QHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp --------------------------CCCCTTCCEEECTTCCEEC
T ss_pred --------------------------HhhhccCCEEEccCCCeec
Confidence 2334689999999987653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=205.28 Aligned_cols=226 Identities=16% Similarity=0.074 Sum_probs=157.8
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYL 529 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L 529 (801)
+++...++.+..++... .++|++|+|++|.++.. .+..|..+++|++|+|++|.+.+..|..++++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~-----------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHV-----------PAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCcc-----------CHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 44555555665554322 35677777777777421 13456777777777777776655556777777
Q ss_pred CCCCEEeccCCC-CCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc-ccc
Q 045877 530 TSLEILDLRACY-NLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDL 607 (801)
Q Consensus 530 ~~L~~L~Ls~n~-~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l 607 (801)
++|++|+|++|. +....|..+..+++|++|++++|.+.+..|..+..+++|++|+ +++|. ....+ ..|
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~~n~-------l~~~~~~~~ 149 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY---LQDNA-------LQALPDDTF 149 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE---CCSSC-------CCCCCTTTT
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE---CCCCc-------ccccCHhHh
Confidence 778888887776 3333366777777788888887777766667777777777777 66666 33333 347
Q ss_pred cCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccC
Q 045877 608 EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVE 687 (801)
Q Consensus 608 ~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~ 687 (801)
+.+++|++|++++|.+.... ...+..+++|+.|++++|.+.+..+..+ .. .
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------~~-l 200 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHPHAF--------------------------RD-L 200 (285)
T ss_dssp TTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTT--------------------------TT-C
T ss_pred ccCCCccEEECCCCcccccC--HHHhcCccccCEEECCCCcccccCHhHc--------------------------cC-c
Confidence 78888888888888887665 4567888889999998888776533221 12 2
Q ss_pred CCccEEEccCCCCCCCCcc-cCCCCCCCccEEEeeCCcCCCCCC
Q 045877 688 SKLEKLDFQCFPDEKLPSW-VHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~lp~~-l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
++|+.|+|++|.+..++.. +. .+++|++|+|++|.+.....
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALA--PLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHT--TCTTCCEEECCSSCEECSGG
T ss_pred ccccEeeCCCCcCCcCCHHHcc--cCcccCEEeccCCCccCCCC
Confidence 6889999999888887754 44 89999999999998876543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=216.83 Aligned_cols=248 Identities=15% Similarity=0.087 Sum_probs=199.1
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~ 527 (801)
....+...++.+..++.... +++++|+|++|.++.. .+..|.++++|++|+|++|.+.+..+..|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~~-----------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS---TNTRLLNLHENQIQII-----------KVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC---TTCSEEECCSCCCCEE-----------CTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred CCCEEEeCCCCcCcCCCCCC---CCCcEEEccCCcCCee-----------CHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence 34567777778887765443 6799999999998532 246789999999999999977777778999
Q ss_pred CCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccC-ccc
Q 045877 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS-LKD 606 (801)
Q Consensus 528 ~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~-~~~ 606 (801)
++++|++|+|++|.+....+..|..+++|++|+|++|.+....+..|..+++|++|+ ++++. . ...+ ...
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~---l~~~~-----~-l~~i~~~~ 180 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD---LGELK-----R-LSYISEGA 180 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE---CCCCT-----T-CCEECTTT
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC---CCCCC-----C-cceeCcch
Confidence 999999999999977766666899999999999999998877777899999999999 77643 0 2222 346
Q ss_pred ccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccccc
Q 045877 607 LEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHV 686 (801)
Q Consensus 607 l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 686 (801)
|.++++|++|+|++|.+... ..+..+++|+.|+|++|.+.+..+..+ ..
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------~~- 229 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREI----PNLTPLIKLDELDLSGNHLSAIRPGSF--------------------------QG- 229 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSC----CCCTTCSSCCEEECTTSCCCEECTTTT--------------------------TT-
T ss_pred hhcccccCeecCCCCcCccc----cccCCCcccCEEECCCCccCccChhhh--------------------------cc-
Confidence 88999999999999998754 357889999999999999886544322 12
Q ss_pred CCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc
Q 045877 687 ESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 687 ~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
.++|+.|+|++|.+..++...+ ..+++|++|+|++|+|+++++..| -.+.+|+.|++++|.+.
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLF-----TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTT-----SSCTTCCEEECCSSCEE
T ss_pred CccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCccChhHh-----ccccCCCEEEcCCCCcc
Confidence 3799999999999888765443 489999999999999999988776 34566777777777764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=217.88 Aligned_cols=206 Identities=18% Similarity=0.159 Sum_probs=127.2
Q ss_pred CCcCCceEeecCCCCCccCchhh--cCCCCCCEEeccCCCCCCCCcccccCC-----CCCCEEcccCCccccCCCcccCC
Q 045877 504 NMKELRLLSLQGMSGIQELPSEI--SYLTSLEILDLRACYNLDKLPDEIGKL-----KSLTHLDISECFLLDGIPKKLSL 576 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i--~~L~~L~~L~Ls~n~~~~~lp~~~~~L-----~~L~~L~Ls~n~l~~~~p~~~~~ 576 (801)
++++|++|+|++|.+.+.+|..+ +.+++|++|+|++|.+.+. |..++.+ ++|++|++++|++.+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~------ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS------ 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch------
Confidence 44555555555554444455443 4555555555555544333 4444444 44555555555433222
Q ss_pred CCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhh--hcccCCcEEEeeccCCCCCCC
Q 045877 577 LSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTV--LAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 577 L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~ 654 (801)
+..|+.+++|++|++++|++.+....+..+ ..+++|++|++++|.+.+...
T Consensus 166 ---------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 166 ---------------------------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp ---------------------------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred ---------------------------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 245666777777788877765432113333 889999999999998874210
Q ss_pred CCCCCCCCccchhchhhhhccccccc-ccccccCCCccEEEccCCCCCCCCc-ccCCCCCCCccEEEeeCCcCCCCCCCc
Q 045877 655 TKPEPQTGRKDNFFIKTLTKFRTRVT-ERSQHVESKLEKLDFQCFPDEKLPS-WVHPYSFKNLKNLYIRGGRLNSLEGSE 732 (801)
Q Consensus 655 ~~~~~~~~~~~~~~l~~L~~~~~~l~-~~~~~~~~~L~~L~L~~n~~~~lp~-~l~~~~l~~L~~L~L~~n~l~~~~~~~ 732 (801)
+. ..... .++|+.|+|++|.+...+. ... ..+++|++|+|++|.|+.++...
T Consensus 219 ------------------------~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 219 ------------------------VCSALAAA-RVQLQGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp ------------------------HHHHHHHT-TCCCSEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCSSCCSSC
T ss_pred ------------------------HHHHHHhc-CCCCCEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccChhhhhc
Confidence 01 11111 3699999999999887552 222 37899999999999999776532
Q ss_pred ccccceeccccccccccccccccCcCCCCceeeccCCCCCcccCCCCCccc
Q 045877 733 WETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGYGIW 783 (801)
Q Consensus 733 f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n~i~ 783 (801)
+ .+|+.|++++|.+++. |. +..+++|+.+.+.+|.+.
T Consensus 273 ~--------~~L~~L~Ls~N~l~~~-p~-----~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P--------AKLSVLDLSYNRLDRN-PS-----PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C--------SEEEEEECCSSCCCSC-CC-----TTTSCEEEEEECTTCTTT
T ss_pred c--------CCceEEECCCCCCCCC-hh-----HhhCCCCCEEeccCCCCC
Confidence 2 6788889999988743 43 456667777777766553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-24 Score=242.29 Aligned_cols=335 Identities=16% Similarity=0.078 Sum_probs=214.8
Q ss_pred hhhccccccccccchhhcch----hhhhhccccCceeeecCCcccCCCCh-hhhccCC----CCCEEEcCCcccCCCCCC
Q 045877 419 FEKIKKLFNFSLSLEEIENK----AKDCAMKRGRIETLFNVSEEFPEFKY-DWFSKLE----KIKVLYLGRWQSTVDDIP 489 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~-~~f~~l~----~L~~L~Ls~n~l~~~~~~ 489 (801)
+..+++|++|+|++|+|+.. ++..+..+++|++|.+.+|.+..... ..+..++ +|++|+|++|.++...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~-- 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG-- 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG--
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH--
Confidence 67788888888888888753 45566667888888888887765433 2334455 6888888888774211
Q ss_pred cccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc-----CCCCCCEEeccCCCCCCC----CcccccCCCCCCEEc
Q 045877 490 HIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS-----YLTSLEILDLRACYNLDK----LPDEIGKLKSLTHLD 560 (801)
Q Consensus 490 ~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~-----~L~~L~~L~Ls~n~~~~~----lp~~~~~L~~L~~L~ 560 (801)
...++..+..+++|++|+|++|.+....+..+. .+++|++|+|++|.+... ++..+..+++|++|+
T Consensus 102 -----~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 102 -----CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp -----HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred -----HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 125677788888888888888765443333332 256788888888866553 355566778888888
Q ss_pred ccCCccccCCCcccC-----CCCcccccccccccCCcchhhhhhccc-----CcccccCCccCCeeEeeccccccccc--
Q 045877 561 ISECFLLDGIPKKLS-----LLSKLQVLKGFVISDHAEDDRRWKRWC-----SLKDLEKLEHLRKLTININSEKFQTE-- 628 (801)
Q Consensus 561 Ls~n~l~~~~p~~~~-----~L~~L~~L~~~~l~~n~~~~~~~~~~~-----~~~~l~~L~~L~~L~L~~n~~~~~~~-- 628 (801)
+++|.+....+..+. .+++|++|+ +++|. ... ++..+..+++|++|++++|.+.....
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~---L~~n~-------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALK---LESCG-------VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEE---CTTSC-------CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEE---ccCCC-------CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 888876543333332 355778887 77666 222 34556678888888888887765320
Q ss_pred C-hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC-----
Q 045877 629 N-LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK----- 702 (801)
Q Consensus 629 ~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~----- 702 (801)
. ...+..+++|++|++++|.++... +.. +...... .++|+.|+|++|.+..
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~---------------~~~-------l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKG---------------CGD-------LCRVLRA-KESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHH---------------HHH-------HHHHHHH-CTTCCEEECTTCCCHHHHHHH
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHH---------------HHH-------HHHHHhh-CCCcceEECCCCCCchHHHHH
Confidence 0 111224778888888888765321 000 0111111 2689999999987642
Q ss_pred CCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccC------------cCCCCceeeccCCC
Q 045877 703 LPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQE------------LFPKLEYLEKFKCH 770 (801)
Q Consensus 703 lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~------------~~p~L~~L~l~~c~ 770 (801)
+...+. ...++|++|+|++|.+++.....++.. .-.+++|+.|++++|.+.+ ..++|++|++.+|
T Consensus 304 l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n- 380 (461)
T 1z7x_W 304 LCETLL-EPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC- 380 (461)
T ss_dssp HHHHHT-STTCCCCEEECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred HHHHhc-cCCccceeeEcCCCCCchHHHHHHHHH-HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-
Confidence 222222 244789999999998876543222110 0234677777888887651 1568888888887
Q ss_pred CCc-----ccCCCCCcccccCCcceEeCCCcccc
Q 045877 771 KVT-----LCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 771 ~L~-----~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
+++ .++. .+..+++|++||+++|++.
T Consensus 381 ~i~~~~~~~l~~---~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 381 DVSDSSCSSLAA---TLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCCHHHHHHHHH---HHHHCCCCCEEECCSSSCC
T ss_pred CCChhhHHHHHH---HHHhCCCccEEECCCCCCC
Confidence 455 3443 4556788999999988764
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-22 Score=214.98 Aligned_cols=258 Identities=13% Similarity=0.045 Sum_probs=202.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
.+++..+++.+.+.......+...++|+.|.+.+|.+..+.+..|.++++|++|+|++|.+++ .+. +
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~-~ 76 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-L 76 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------------EEE-E
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------------chh-h
Confidence 356777899999998888888888999999999999999999999999999999999999843 222 8
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
..+++|++|+|++|.+ ..++ .+++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..++.+++|++
T Consensus 77 ~~l~~L~~L~Ls~n~l-~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYV-QELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp TTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred hhcCCCCEEECcCCcc-cccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 8999999999999854 3333 458999999999976654433 4688999999999998877778999999999
Q ss_pred cccccccCCcchhhhhhcccC-cccc-cCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCS-LKDL-EKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~-~~~l-~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 660 (801)
|+ +++|. .... +..+ ..+++|++|++++|.+.... ....+++|+.|+|++|.+.+..+
T Consensus 149 L~---Ls~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~l~~L~~L~Ls~N~l~~l~~------ 208 (317)
T 3o53_A 149 LD---LKLNE-------IDTVNFAELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAFMGP------ 208 (317)
T ss_dssp EE---CTTSC-------CCEEEGGGGGGGTTTCCEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCCEECG------
T ss_pred EE---CCCCC-------CCcccHHHHhhccCcCCEEECCCCcCcccc----cccccccCCEEECCCCcCCcchh------
Confidence 99 88887 3222 3344 47899999999999987653 23358899999999998875421
Q ss_pred CCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC-CCCCCccccccee
Q 045877 661 TGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN-SLEGSEWETVKVL 739 (801)
Q Consensus 661 ~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~-~~~~~~f~~L~~l 739 (801)
. ... .++|+.|+|++|.+..+|..+. .+++|+.|+|++|.+. +..+..+ .
T Consensus 209 --------------------~-~~~-l~~L~~L~L~~N~l~~l~~~~~--~l~~L~~L~l~~N~~~~~~~~~~~-----~ 259 (317)
T 3o53_A 209 --------------------E-FQS-AAGVTWISLRNNKLVLIEKALR--FSQNLEHFDLRGNGFHCGTLRDFF-----S 259 (317)
T ss_dssp --------------------G-GGG-GTTCSEEECTTSCCCEECTTCC--CCTTCCEEECTTCCCBHHHHHHHH-----H
T ss_pred --------------------h-hcc-cCcccEEECcCCcccchhhHhh--cCCCCCEEEccCCCccCcCHHHHH-----h
Confidence 1 112 3789999999999999998876 8999999999999987 3322222 2
Q ss_pred ccccccccccc
Q 045877 740 RLKYLNELKID 750 (801)
Q Consensus 740 ~L~~L~~L~l~ 750 (801)
.+..|+.|++.
T Consensus 260 ~~~~L~~l~l~ 270 (317)
T 3o53_A 260 KNQRVQTVAKQ 270 (317)
T ss_dssp TCHHHHHHHHH
T ss_pred ccccceEEECC
Confidence 34555555554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=218.40 Aligned_cols=207 Identities=19% Similarity=0.149 Sum_probs=172.0
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++++.|+|++|+|+++.+..|..+++|+.|.+.+|.+..+.+..|.++++|++|+|++|.++... +..|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~ 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-----------SGAF 143 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-----------TTTS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-----------hhhh
Confidence 57889999999999999999999999999999999999988899999999999999999885321 3457
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcc-cccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPD-EIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~-~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
..+++|++|+|++|.+....+..+.++++|++|+|++|+.++.++. .|.++++|++|++++|.+.+ +| .+..+++|+
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 221 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLE 221 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCC
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-ccccccccc
Confidence 8899999999999866555556788999999999998777776665 58889999999999998764 44 588888899
Q ss_pred ccccccccCCcchhhhhhccc-CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 582 VLKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~-~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
.|+ +++|. ... .+..|..+++|+.|+|++|.+.... +..|.++++|+.|+|++|.+.+...
T Consensus 222 ~L~---Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 222 ELE---MSGNH-------FPEIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp EEE---CTTSC-------CSEECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEE---CcCCc-------CcccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCCcCCccCh
Confidence 988 88887 333 3567889999999999999988776 6778889999999999998886543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=202.85 Aligned_cols=208 Identities=15% Similarity=0.052 Sum_probs=183.9
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcc-cCCCCCCcccccchhhhH
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDYLK 500 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~lp~ 500 (801)
.++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|. +... .+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-----------~~~ 99 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-----------DPA 99 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-----------CTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-----------CHH
Confidence 4689999999999999999999999999999999999999999999999999999999997 6422 266
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
.+..+++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 78999999999999998777778889999999999999998777666779999999999999999887666679999999
Q ss_pred cccccccccCCcchhhhhhccc-CcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWC-SLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~-~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
++|+ +++|. ... .+..+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+...
T Consensus 180 ~~L~---l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 180 DRLL---LHQNR-------VAHVHPHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CEEE---CCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCC--HHHHTTCTTCCEEECCSSCEECS
T ss_pred CEEE---CCCCc-------ccccCHhHccCcccccEeeCCCCcCCcCC--HHHcccCcccCEEeccCCCccCC
Confidence 9999 88887 333 3678999999999999999998765 67799999999999999988753
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=215.05 Aligned_cols=219 Identities=19% Similarity=0.082 Sum_probs=137.6
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
..++.|++++|.|+.++...+ ++|+.|.+.+|.+..++. .+++|++|+|++|.++. +|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~------------lp~-- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS------------LPV-- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC------------CCC--
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc------------CCC--
Confidence 357778888888775443332 577777777777776654 46777777887777742 232
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.+++|++|+|++|. +..+|. .+.+|++|+|++|.+. .+|.. +++|++|++++|.+.+ +|.. +.+|+.
T Consensus 99 -~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~ 165 (622)
T 3g06_A 99 -LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCK 165 (622)
T ss_dssp -CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred -CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCE
Confidence 56777777777764 344554 5677777777777543 35543 3677777777777653 4432 345556
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTG 662 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 662 (801)
|+ +++|. +..++ ..+++|+.|++++|.+.... . .+++|+.|++++|.+....
T Consensus 166 L~---L~~N~-------l~~l~---~~~~~L~~L~Ls~N~l~~l~---~---~~~~L~~L~L~~N~l~~l~--------- 217 (622)
T 3g06_A 166 LW---AYNNQ-------LTSLP---MLPSGLQELSVSDNQLASLP---T---LPSELYKLWAYNNRLTSLP--------- 217 (622)
T ss_dssp EE---CCSSC-------CSCCC---CCCTTCCEEECCSSCCSCCC---C---CCTTCCEEECCSSCCSSCC---------
T ss_pred EE---CCCCC-------CCCCc---ccCCCCcEEECCCCCCCCCC---C---ccchhhEEECcCCcccccC---------
Confidence 65 66665 33333 34567777777777766532 1 2356777777777665321
Q ss_pred ccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 663 RKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 663 ~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
..+++|+.|+|++|.+..+| . .+++|++|+|++|.|++++.
T Consensus 218 ----------------------~~~~~L~~L~Ls~N~L~~lp---~--~l~~L~~L~Ls~N~L~~lp~ 258 (622)
T 3g06_A 218 ----------------------ALPSGLKELIVSGNRLTSLP---V--LPSELKELMVSGNRLTSLPM 258 (622)
T ss_dssp ----------------------CCCTTCCEEECCSSCCSCCC---C--CCTTCCEEECCSSCCSCCCC
T ss_pred ----------------------CCCCCCCEEEccCCccCcCC---C--CCCcCcEEECCCCCCCcCCc
Confidence 11356777777777777666 2 45677777777777766554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-22 Score=213.49 Aligned_cols=249 Identities=12% Similarity=-0.017 Sum_probs=204.1
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
.-+..+++|++|+|++|+|++..+..|..+++|+.|.+.+|.+....+ |..+++|++|+|++|.+++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~----------- 94 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE----------- 94 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----------
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----------
Confidence 345567799999999999999999999999999999999999987665 9999999999999999842
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCccc-C
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKL-S 575 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~-~ 575 (801)
+...++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+ .
T Consensus 95 -----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 95 -----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp -----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred -----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 23458999999999866554433 47899999999998888778889999999999999999988777766 4
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKST 655 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 655 (801)
.+++|++|+ +++|. .... .....+++|++|+|++|.+.... ..+..+++|+.|++++|.+.+...
T Consensus 167 ~l~~L~~L~---L~~N~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~L~~N~l~~l~~- 231 (317)
T 3o53_A 167 SSDTLEHLN---LQYNF-------IYDV-KGQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEK- 231 (317)
T ss_dssp GTTTCCEEE---CTTSC-------CCEE-ECCCCCTTCCEEECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECT-
T ss_pred ccCcCCEEE---CCCCc-------Cccc-ccccccccCCEEECCCCcCCcch---hhhcccCcccEEECcCCcccchhh-
Confidence 789999999 88887 3333 34456999999999999998764 458899999999999999875321
Q ss_pred CCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC--CCCcccCCCCCCCccEEEeeCCc-CCCCCC
Q 045877 656 KPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE--KLPSWVHPYSFKNLKNLYIRGGR-LNSLEG 730 (801)
Q Consensus 656 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~--~lp~~l~~~~l~~L~~L~L~~n~-l~~~~~ 730 (801)
.... .++|+.|+|++|.+. .+|.++. .+++|+.|++.+|. +.+..+
T Consensus 232 --------------------------~~~~-l~~L~~L~l~~N~~~~~~~~~~~~--~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 232 --------------------------ALRF-SQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp --------------------------TCCC-CTTCCEEECTTCCCBHHHHHHHHH--TCHHHHHHHHHHHHHHHSSSS
T ss_pred --------------------------Hhhc-CCCCCEEEccCCCccCcCHHHHHh--ccccceEEECCCchhccCCch
Confidence 1112 369999999999886 6777877 89999999998654 555544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-23 Score=233.39 Aligned_cols=318 Identities=15% Similarity=0.027 Sum_probs=219.0
Q ss_pred hhhhhhccccccccccchhhcchhhhhhc-ccc----CceeeecCCcccCC----CChhhhccCCCCCEEEcCCcccCCC
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAM-KRG----RIETLFNVSEEFPE----FKYDWFSKLEKIKVLYLGRWQSTVD 486 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~----~L~~L~l~~n~i~~----~~~~~f~~l~~L~~L~Ls~n~l~~~ 486 (801)
+..+..+++|++|+|++|+|....+..+. .+. +|++|.+.+|.+.. ..+..|.++++|+.|+|++|.++..
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 45577789999999999999886665543 344 69999999999885 3478889999999999999988421
Q ss_pred CCCcccccchhhhHhh-cCCcCCceEeecCCCCCcc----CchhhcCCCCCCEEeccCCCCCCCCccccc-----CCCCC
Q 045877 487 DIPHIEIESTDYLKGL-KNMKELRLLSLQGMSGIQE----LPSEISYLTSLEILDLRACYNLDKLPDEIG-----KLKSL 556 (801)
Q Consensus 487 ~~~~~~~~~~~lp~~l-~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~-----~L~~L 556 (801)
. ...+...+ ....+|++|+|++|.+.+. ++..+..+++|++|+|++|.+....+..+. .+++|
T Consensus 129 ~-------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L 201 (461)
T 1z7x_W 129 G-------LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201 (461)
T ss_dssp H-------HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred H-------HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCc
Confidence 1 01222222 3367899999999976653 466778899999999999975443333333 36699
Q ss_pred CEEcccCCccccC----CCcccCCCCcccccccccccCCcchhhhhhcccC-cccccCCccCCeeEeecccccccc--cC
Q 045877 557 THLDISECFLLDG----IPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS-LKDLEKLEHLRKLTININSEKFQT--EN 629 (801)
Q Consensus 557 ~~L~Ls~n~l~~~----~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~-~~~l~~L~~L~~L~L~~n~~~~~~--~~ 629 (801)
++|++++|.+... ++..+..+++|++|+ +++|....... ..+ ...+..+++|++|++++|.+.... ..
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~---Ls~n~l~~~~~--~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASKASLRELA---LGSNKLGDVGM--AELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE---CCSSBCHHHHH--HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhCCCccEEe---ccCCcCChHHH--HHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 9999999998763 577788899999999 88877211000 001 122346889999999999887642 11
Q ss_pred hhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCC-----CC
Q 045877 630 LSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEK-----LP 704 (801)
Q Consensus 630 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~-----lp 704 (801)
+..+..+++|++|++++|.+.+... .. +........++|+.|+|++|.++. ++
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~---------------~~-------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGA---------------RL-------LCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHH---------------HH-------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHH---------------HH-------HHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4567789999999999997753211 10 111111223689999999998764 34
Q ss_pred cccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccC-----------cCCCCceeeccCC
Q 045877 705 SWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQE-----------LFPKLEYLEKFKC 769 (801)
Q Consensus 705 ~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~-----------~~p~L~~L~l~~c 769 (801)
.++. .+++|++|+|++|.+++.....+...-.-...+|+.|++++|.+++ .+++|++|++.+|
T Consensus 335 ~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 335 SVLA--QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHH--HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHh--hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 5555 7899999999999887654322210000014577778888887762 2466666666665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=212.21 Aligned_cols=255 Identities=23% Similarity=0.108 Sum_probs=140.7
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
.+++.|.+.+|.+..++...+ ++|++|+|++|.++. +|. .+++|++|+|++|. +..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~------------lp~---~l~~L~~L~Ls~N~-l~~lp~-- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS------------LPA---LPPELRTLEVSGNQ-LTSLPV-- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC------------CCC---CCTTCCEEEECSCC-CSCCCC--
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCC------------CCC---cCCCCCEEEcCCCc-CCcCCC--
Confidence 346666666666665544332 566666666666632 222 35666666666664 334554
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCccc
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD 606 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~ 606 (801)
.+++|++|+|++|.+. .+|. .+++|++|++++|++.. +|.. +++|++|+ +++|. ...++.
T Consensus 99 -~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~---Ls~N~-------l~~l~~- 158 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS---VSDNQ-------LASLPA- 158 (622)
T ss_dssp -CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE---CCSSC-------CSCCCC-
T ss_pred -CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE---CcCCc-------CCCcCC-
Confidence 5566666666666433 3443 45566666666666543 4442 35566666 55555 222222
Q ss_pred ccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccccc
Q 045877 607 LEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHV 686 (801)
Q Consensus 607 l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 686 (801)
.+.+|+.|++++|.+.... ..+++|+.|++++|.+.+... .
T Consensus 159 --~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~~l~~-------------------------------~ 199 (622)
T 3g06_A 159 --LPSELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQLASLPT-------------------------------L 199 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC-------------------------------C
T ss_pred --ccCCCCEEECCCCCCCCCc------ccCCCCcEEECCCCCCCCCCC-------------------------------c
Confidence 2345666666666665432 334566666666666554211 1
Q ss_pred CCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc---CcCCCCce
Q 045877 687 ESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ---ELFPKLEY 763 (801)
Q Consensus 687 ~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~---~~~p~L~~ 763 (801)
+++|+.|++++|.+..+|. .+++|++|+|++|.|++++ .. +.+|+.|++++|.++ ..+++|+.
T Consensus 200 ~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~L~~lp-~~--------l~~L~~L~Ls~N~L~~lp~~~~~L~~ 265 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLP-VL--------PSELKELMVSGNRLTSLPMLPSGLLS 265 (622)
T ss_dssp CTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSCCC-CC--------CTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred cchhhEEECcCCcccccCC-----CCCCCCEEEccCCccCcCC-CC--------CCcCcEEECCCCCCCcCCcccccCcE
Confidence 2466666666666665553 2356666666666666654 22 234444444555443 23455666
Q ss_pred eeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 764 LEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 764 L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
|++.+| +++.+|. .+.++++|+.|||++|++.
T Consensus 266 L~Ls~N-~L~~lp~---~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 266 LSVYRN-QLTRLPE---SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EECCSS-CCCSCCG---GGGGSCTTCEEECCSCCCC
T ss_pred EeCCCC-CCCcCCH---HHhhccccCEEEecCCCCC
Confidence 666665 5555543 4566666666666666653
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=191.13 Aligned_cols=209 Identities=15% Similarity=0.072 Sum_probs=157.8
Q ss_pred CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccc
Q 045877 471 EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEI 550 (801)
Q Consensus 471 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~ 550 (801)
++|++|+|++|.++.. .+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+.+..+..|
T Consensus 28 ~~l~~L~ls~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-----------GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEE-----------CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CCccEEECCCCccccc-----------CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 4688888888877432 13367778888888888876655555678888888888888887776666778
Q ss_pred cCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccCh
Q 045877 551 GKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL 630 (801)
Q Consensus 551 ~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~ 630 (801)
.++++|++|++++|.+.+..+..++.+++|++|+ +++|. +.....+..+..+++|++|++++|.+.... .
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~~n~-----l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~--~ 166 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELN---VAHNL-----IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--C 166 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE---CCSSC-----CCCCCCCGGGGGCTTCCEEECCSSCCCEEC--G
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEE---CcCCc-----cceecCchhhccCCCCCEEECCCCCCCcCC--H
Confidence 8888888888888887766666788888888888 77776 112225678889999999999999988765 5
Q ss_pred hhhhcccCCc----EEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcc
Q 045877 631 STVLAFKRLL----QLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSW 706 (801)
Q Consensus 631 ~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~ 706 (801)
..+..+.+|+ .|++++|.+.+..+..+ . ..+|+.|+|++|.+..+|..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---------------------------~-~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------------------------K-EIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------------------------C-SCCEEEEECCSSCCSCCCTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc---------------------------C-CCcccEEECCCCceeecCHh
Confidence 5666666666 89999998876443211 1 14799999999999999887
Q ss_pred cCCCCCCCccEEEeeCCcCCCCC
Q 045877 707 VHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 707 l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
++ ..+++|++|+|++|.+....
T Consensus 219 ~~-~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 219 IF-DRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TT-TTCCSCCEEECCSSCBCCCT
T ss_pred Hh-cccccccEEEccCCcccccC
Confidence 64 58999999999999988654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=197.26 Aligned_cols=211 Identities=16% Similarity=0.095 Sum_probs=179.1
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|++|+|++|+|+++.+..|..+++|++|.+.+|.+..+.+..|.++++|++|+|++|.++.. .+..|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-----------ALGAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-----------CTTTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-----------Chhhh
Confidence 4789999999999999999999999999999999999999999999999999999999998532 24678
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC-CCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD-KLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~-~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
.++++|++|++++|.+.+..+..++.+++|++|+|++|.+.+ .+|..+..+++|++|++++|.+.+..+..+..+.+|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 999999999999997766656679999999999999997766 4699999999999999999999887777788888887
Q ss_pred ccc-cccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCC
Q 045877 582 VLK-GFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANK 653 (801)
Q Consensus 582 ~L~-~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 653 (801)
.|. ...+++|. ....+.......+|+.|++++|.+.... ...+..+++|+.|++++|.+.+..
T Consensus 177 ~l~l~L~ls~n~-------l~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 177 LLNLSLDLSLNP-------MNFIQPGAFKEIRLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCEEEECCSSC-------CCEECTTSSCSCCEEEEECCSSCCSCCC--TTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccceeeecCCCc-------ccccCccccCCCcccEEECCCCceeecC--HhHhcccccccEEEccCCcccccC
Confidence 433 12278887 4445555555668999999999998765 566789999999999999998653
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-21 Score=218.88 Aligned_cols=214 Identities=15% Similarity=0.081 Sum_probs=108.9
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~ 527 (801)
+|+.|.+.+|.+..+++..|.++++|++|+|++|.+++ .+. +..+++|++|+|++|.+ ..+|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~-l~~l~~L~~L~Ls~N~l-~~l~---- 96 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-LESLSTLRTLDLNNNYV-QELL---- 96 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE------------EEE-CTTCTTCCEEECCSSEE-EEEE----
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC------------Ccc-cccCCCCCEEEecCCcC-CCCC----
Confidence 45555555555555555555555555555555555521 111 45555555555555432 2222
Q ss_pred CCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhccc-Cccc
Q 045877 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWC-SLKD 606 (801)
Q Consensus 528 ~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~-~~~~ 606 (801)
..++|++|+|++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|++|+ +++|. ... .+..
T Consensus 97 ~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---Ls~N~-------l~~~~~~~ 163 (487)
T 3oja_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD---LKLNE-------IDTVNFAE 163 (487)
T ss_dssp ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE---CTTSC-------CCEEEGGG
T ss_pred CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE---CCCCC-------CCCcChHH
Confidence 125555555555544433222 234555555555555555555555555555555 55544 111 2233
Q ss_pred cc-CCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccc
Q 045877 607 LE-KLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQH 685 (801)
Q Consensus 607 l~-~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 685 (801)
+. .+++|+.|+|++|.+.+.. .+..+++|+.|+|++|.+++..+ . ...
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~-~~~ 212 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAFMGP--------------------------E-FQS 212 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEE----CCCCCTTCCEEECCSSCCCEECG--------------------------G-GGG
T ss_pred HhhhCCcccEEecCCCcccccc----ccccCCCCCEEECCCCCCCCCCH--------------------------h-HcC
Confidence 33 4566666666666655432 12245666666666666554321 0 111
Q ss_pred cCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC
Q 045877 686 VESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 686 ~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~ 726 (801)
.++|+.|+|++|.+..+|.++. .+++|+.|+|++|.+.
T Consensus 213 -l~~L~~L~Ls~N~l~~lp~~l~--~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 213 -AAGVTWISLRNNKLVLIEKALR--FSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -GTTCSEEECTTSCCCEECTTCC--CCTTCCEEECTTCCBC
T ss_pred -CCCccEEEecCCcCcccchhhc--cCCCCCEEEcCCCCCc
Confidence 2466666666666666666654 6666666666666655
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=185.98 Aligned_cols=203 Identities=17% Similarity=0.109 Sum_probs=168.1
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
.++.+++++|+++.++... ...++.|.+.+|.+..+++..|.++++|++|+|++|.++... +..|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-----------~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-----------AGIFK 82 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-----------TTTTS
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-----------hhhhc
Confidence 4567899999998754433 257899999999999998889999999999999999985321 34468
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L 583 (801)
.+++|++|+|++|.+.+..+..+.++++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 89999999999987665555677899999999999998887777788999999999999999886666668999999999
Q ss_pred ccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 584 KGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 584 ~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
+ +++|. ....+ ..|..+++|++|+|++|.+.... ...+..+++|+.|+|++|.+...
T Consensus 163 ~---L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 163 R---LYNNQ-------LKRVPEGAFDKLTELKTLKLDNNQLKRVP--EGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp E---CCSSC-------CSCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCS
T ss_pred E---ecCCc-------CcEeChhHhccCCCcCEEECCCCcCCcCC--HHHhccccCCCEEEecCCCeeCC
Confidence 9 88887 44444 35889999999999999988765 56688899999999999987654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=206.78 Aligned_cols=236 Identities=12% Similarity=-0.013 Sum_probs=193.6
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
..++|+.|+|++|.|++..+..|..+++|++|.+.+|.+....+ |..+++|++|+|++|.+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--------------- 94 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE--------------- 94 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE---------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC---------------
Confidence 34489999999999999999999999999999999999987665 8999999999999998842
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC-CCCc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS-LLSK 579 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~-~L~~ 579 (801)
+...++|++|+|++|.+.+..+. .+++|++|+|++|.+.+..|..++.+++|++|+|++|.+.+..|..+. .+++
T Consensus 95 -l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 95 -LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp -EEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred -CCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 22348999999999876655443 468899999999988888888899999999999999999988888776 7899
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCC
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEP 659 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 659 (801)
|++|+ +++|. .... ..+..+++|+.|+|++|.+.+.. ..+..+++|+.|+|++|.+.+...
T Consensus 171 L~~L~---Ls~N~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~lp~----- 231 (487)
T 3oja_A 171 LEHLN---LQYNF-------IYDV-KGQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEK----- 231 (487)
T ss_dssp CCEEE---CTTSC-------CCEE-ECCCCCTTCCEEECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECT-----
T ss_pred ccEEe---cCCCc-------cccc-cccccCCCCCEEECCCCCCCCCC---HhHcCCCCccEEEecCCcCcccch-----
Confidence 99999 88887 3333 34556999999999999998764 458899999999999998875321
Q ss_pred CCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC--CCCcccCCCCCCCccEEEee
Q 045877 660 QTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE--KLPSWVHPYSFKNLKNLYIR 721 (801)
Q Consensus 660 ~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~--~lp~~l~~~~l~~L~~L~L~ 721 (801)
.... .++|+.|+|++|.+. .+|.++. .++.|+.|++.
T Consensus 232 ----------------------~l~~-l~~L~~L~l~~N~l~c~~~~~~~~--~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ----------------------ALRF-SQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQ 270 (487)
T ss_dssp ----------------------TCCC-CTTCCEEECTTCCBCHHHHHHHHT--TCHHHHHHHHH
T ss_pred ----------------------hhcc-CCCCCEEEcCCCCCcCcchHHHHH--hCCCCcEEecc
Confidence 1112 368999999999876 6777777 88888888886
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-19 Score=187.91 Aligned_cols=203 Identities=17% Similarity=0.063 Sum_probs=174.5
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 498 (801)
+.++++++.+++++|+|+.+++..+ ..++.|.+.+|.+..+.+..|.++++|+.|+|++|.++. +
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------L 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------E
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------------c
Confidence 5678889999999999998765543 588999999999999999999999999999999999853 2
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCC
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
+. ...+++|++|+|++|. +..+|..+..+++|++|+|++|++.+..+..|..+++|++|+|++|++.+..+..|..++
T Consensus 71 ~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 71 QV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp EC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cC-CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence 22 3789999999999984 568898899999999999999988777778899999999999999999877677789999
Q ss_pred cccccccccccCCcchhhhhhcccCcc-cccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLK-DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~-~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
+|+.|+ +++|. ...++. .|..+++|+.|+|++|.+... +..+..+.+|+.|+|++|.+..
T Consensus 149 ~L~~L~---L~~N~-------l~~l~~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 149 KLEKLS---LANNN-------LTELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TCCEEE---CTTSC-------CSCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCEEE---CCCCc-------CCccCHHHhcCcCCCCEEECCCCcCCcc---ChhhcccccCCeEEeCCCCccC
Confidence 999999 88888 455554 568899999999999999855 5667778899999999998763
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=183.57 Aligned_cols=204 Identities=19% Similarity=0.092 Sum_probs=136.9
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
+.++++|+.++++++.++ .+|..+. ++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+ +
T Consensus 6 ~~~l~~l~~l~~~~~~l~------------~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT------------ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-L 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS------------SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-E
T ss_pred ccccCCccEEECCCCCCC------------cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-c
Confidence 455666666666666663 2233222 466666666665555555666666777777776664433 3
Q ss_pred cccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccc
Q 045877 547 PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKF 625 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~ 625 (801)
+.. +.+++|++|++++|.+. .+|..+..+++|++|+ +++|. ....+ ..|..+++|++|+|++|++..
T Consensus 71 ~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~---l~~N~-------l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD---VSFNR-------LTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE---CCSSC-------CCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE---CCCCc-------CcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 322 56666777777777654 5566666666676666 66665 33333 457778888888888888776
Q ss_pred cccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCc
Q 045877 626 QTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPS 705 (801)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~ 705 (801)
.. +..|..+++|+.|+|++|.+.+.....+ .. .++|+.|+|++|.+..+|.
T Consensus 139 ~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~--------------------------~~-l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 139 LP--PGLLTPTPKLEKLSLANNNLTELPAGLL--------------------------NG-LENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp CC--TTTTTTCTTCCEEECTTSCCSCCCTTTT--------------------------TT-CTTCCEEECCSSCCCCCCT
T ss_pred cC--hhhcccccCCCEEECCCCcCCccCHHHh--------------------------cC-cCCCCEEECCCCcCCccCh
Confidence 65 5667788888899998888875543211 11 3689999999999999999
Q ss_pred ccCCCCCCCccEEEeeCCcCCCC
Q 045877 706 WVHPYSFKNLKNLYIRGGRLNSL 728 (801)
Q Consensus 706 ~l~~~~l~~L~~L~L~~n~l~~~ 728 (801)
.++ .+.+|+.|+|++|.+...
T Consensus 190 ~~~--~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 190 GFF--GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTT--TTCCCSEEECCSCCBCCS
T ss_pred hhc--ccccCCeEEeCCCCccCc
Confidence 887 788999999999987643
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-18 Score=178.26 Aligned_cols=184 Identities=16% Similarity=0.085 Sum_probs=117.0
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
.+|++|+|++|.+.+..+..|+++++|++|+|++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~- 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR- 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE-
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE-
Confidence 3566666666544433334566666666666666644433333445566666666666665544444556666666666
Q ss_pred ccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCcc
Q 045877 586 FVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRK 664 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 664 (801)
+++|. ....+ ..|..+++|++|+|++|.+.... ...|..+++|+.|+|++|.+.+..+..+
T Consensus 116 --l~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~------- 177 (270)
T 2o6q_A 116 --LDRNQ-------LKSLPPRVFDSLTKLTYLSLGYNELQSLP--KGVFDKLTSLKELRLYNNQLKRVPEGAF------- 177 (270)
T ss_dssp --CCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTT-------
T ss_pred --CCCCc-------cCeeCHHHhCcCcCCCEEECCCCcCCccC--HhHccCCcccceeEecCCcCcEeChhHh-------
Confidence 55554 22222 34667777888888888777654 4557778888888888887776443211
Q ss_pred chhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCC
Q 045877 665 DNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 665 ~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
.. .++|+.|+|++|.+..+|...+ ..+++|+.|+|++|.+....
T Consensus 178 -------------------~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 178 -------------------DK-LTELKTLKLDNNQLKRVPEGAF-DSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp -------------------TT-CTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBCCSS
T ss_pred -------------------cc-CCCcCEEECCCCcCCcCCHHHh-ccccCCCEEEecCCCeeCCC
Confidence 11 2678888888888888877543 47889999999999876554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-20 Score=214.78 Aligned_cols=210 Identities=12% Similarity=0.078 Sum_probs=150.9
Q ss_pred hhhccccccccccchhhcch----hhhhhccccCceeeecCCcccCCCC----hhhhccCCCCCEEEcCCcccCCCCCCc
Q 045877 419 FEKIKKLFNFSLSLEEIENK----AKDCAMKRGRIETLFNVSEEFPEFK----YDWFSKLEKIKVLYLGRWQSTVDDIPH 490 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~----~~~f~~l~~L~~L~Ls~n~l~~~~~~~ 490 (801)
+..+++|++|+|++|.+++. ++..+..+++|+.|.+..|.+..+. +..+.++++|++|+|++|.+
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~------- 232 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI------- 232 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-------
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-------
Confidence 34778999999999988766 5556667889999999988887443 34557889999999999887
Q ss_pred ccccchhhhHhhcCCcCCceEeecCCCCC---ccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 491 IEIESTDYLKGLKNMKELRLLSLQGMSGI---QELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 491 ~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~---~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
..++..+..+++|++|+++++... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++++|.+.
T Consensus 233 -----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 233 -----LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp -----GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred -----HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCC
Confidence 356778888999999999864322 334456778889999999885 56677888888999999999999865
Q ss_pred cCCC-cccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeec-----------ccccccccChhhhhc
Q 045877 568 DGIP-KKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTINI-----------NSEKFQTENLSTVLA 635 (801)
Q Consensus 568 ~~~p-~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~-----------n~~~~~~~~~~~l~~ 635 (801)
.... ..+..+++|++|+ +.++. ........+..+++|++|+|++ +.++... ....+..
T Consensus 307 ~~~~~~~~~~~~~L~~L~---L~~~~------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-~~~l~~~ 376 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLE---TRNVI------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG-LIALAQG 376 (592)
T ss_dssp HHHHHHHHTTCTTCCEEE---EEGGG------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH-HHHHHHH
T ss_pred HHHHHHHHHhCcCCCEEe---ccCcc------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH-HHHHHhh
Confidence 4332 3467888899888 55332 1122233446678899999983 4444322 1233456
Q ss_pred ccCCcEEEeeccCCCC
Q 045877 636 FKRLLQLKVSWGGGSA 651 (801)
Q Consensus 636 l~~L~~L~L~~n~l~~ 651 (801)
+++|++|+++.|.+++
T Consensus 377 ~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 377 CQELEYMAVYVSDITN 392 (592)
T ss_dssp CTTCSEEEEEESCCCH
T ss_pred CccCeEEEeecCCccH
Confidence 8889999998777654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=180.12 Aligned_cols=202 Identities=17% Similarity=0.109 Sum_probs=154.2
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
++.+..+++..+.+..... ...+.+|+.|.+.++.+..+. .+..+++|++|+|++|.+++ + ..
T Consensus 18 ~~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~------------~-~~ 80 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHD------------I-SA 80 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCC------------C-GG
T ss_pred HHHHHHHHhcCcccccccc--cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCC------------c-hh
Confidence 3444455566665554432 335677888888888777653 47888999999999998843 2 36
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
+..+++|++|+|++|.+.+..+..++++++|++|+|++|.+.+..+..++.+++|++|++++|.+.+..+..++.+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 78889999999999876665566678899999999999877776666788899999999999988876666678889999
Q ss_pred ccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
+|+ +++|. ....+ ..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+.
T Consensus 161 ~L~---l~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 161 ELD---LSYNQ-------LQSLPEGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp EEE---CCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEE---CCCCC-------cCccCHHHhcCCccCCEEECCCCcCCccC--HHHHhCCcCCCEEEccCCCcccc
Confidence 988 88877 33343 34688899999999999888765 56678899999999999887653
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-19 Score=187.01 Aligned_cols=233 Identities=17% Similarity=0.100 Sum_probs=160.1
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh--cCCCCCCEEeccCCCCCCCCc--
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI--SYLTSLEILDLRACYNLDKLP-- 547 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i--~~L~~L~~L~Ls~n~~~~~lp-- 547 (801)
.++.|.+.++.++... ...+.. +..+.+|++|+|++|.+.+..|..+ +.+++|++|+|++|.+.+..+
T Consensus 65 ~l~~l~l~~~~~~~~~-------~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQL-------LVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCEEEECSCCCBHHH-------HHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred ceeEEEEeCCcCCHHH-------HHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 4677777777663210 011111 2234668888888887777777777 788888888888887766554
Q ss_pred --ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhc---ccCcccccCCccCCeeEeeccc
Q 045877 548 --DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKR---WCSLKDLEKLEHLRKLTININS 622 (801)
Q Consensus 548 --~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~---~~~~~~l~~L~~L~~L~L~~n~ 622 (801)
..+..+++|++|++++|.+.+..+..|+.+++|++|+ +++|. +.. ......++.+++|++|+|++|.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---Ls~N~-----l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD---LSDNP-----GLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE---CCSCT-----TCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE---CCCCC-----CccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 3455788888888888888777777888888888888 77776 111 0112234678889999999998
Q ss_pred ccccccChh-hhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC
Q 045877 623 EKFQTENLS-TVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE 701 (801)
Q Consensus 623 ~~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~ 701 (801)
+........ .+..+++|++|+|++|.+.+..+..+ ... ..+++|+.|+|++|.+.
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~----------------------~~~--~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA----------------------PRC--MWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC----------------------SSC--CCCTTCCCEECCSSCCC
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH----------------------Hhc--cCcCcCCEEECCCCCCC
Confidence 864331122 35778899999999998887644322 011 11368899999998888
Q ss_pred CCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc
Q 045877 702 KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 702 ~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
.+|..+. ++|++|+|++|+|++++. + ..+++|+.|++++|.++
T Consensus 265 ~lp~~~~----~~L~~L~Ls~N~l~~~~~--~-----~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 265 QVPKGLP----AKLRVLDLSSNRLNRAPQ--P-----DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCSCCC----SCCSCEECCSCCCCSCCC--T-----TSCCCCSCEECSSTTTS
T ss_pred chhhhhc----CCCCEEECCCCcCCCCch--h-----hhCCCccEEECcCCCCC
Confidence 8888754 788999999999887743 2 23567777777777764
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=182.45 Aligned_cols=199 Identities=16% Similarity=0.149 Sum_probs=168.5
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+.++++|+.|++++|++.... .+..+++|+.|.+.+|.+..+.+ |.++++|++|+|++|.++.
T Consensus 34 ~~~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~---------- 99 (308)
T 1h6u_A 34 TVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---------- 99 (308)
T ss_dssp EECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC----------
T ss_pred eecHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC----------
Confidence 356778999999999999998864 57789999999999999998876 9999999999999999853
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
+ ..+..+++|++|+|++|.+ ..++. +..+++|++|+|++|.+.+ ++. ++.+++|++|++++|.+.+ ++. +.
T Consensus 100 --~-~~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~ 170 (308)
T 1h6u_A 100 --V-SAIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LA 170 (308)
T ss_dssp --C-GGGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GT
T ss_pred --c-hhhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hc
Confidence 2 3688999999999999865 44654 9999999999999996655 444 8899999999999999875 443 89
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
.+++|+.|+ +++|. ....+ .+..+++|++|++++|.+.... .+..+++|+.|++++|.+++.
T Consensus 171 ~l~~L~~L~---l~~n~-------l~~~~-~l~~l~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 171 NLSKLTTLK---ADDNK-------ISDIS-PLASLPNLIEVHLKNNQISDVS----PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TCTTCCEEE---CCSSC-------CCCCG-GGGGCTTCCEEECTTSCCCBCG----GGTTCTTCCEEEEEEEEEECC
T ss_pred CCCCCCEEE---CCCCc-------cCcCh-hhcCCCCCCEEEccCCccCccc----cccCCCCCCEEEccCCeeecC
Confidence 999999999 88887 33333 4889999999999999988654 488999999999999998754
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=185.95 Aligned_cols=202 Identities=16% Similarity=0.106 Sum_probs=140.6
Q ss_pred CCCCCEEEcCCcccCCCCCCcccccchhhhHhh--cCCcCCceEeecCCCCCccCc----hhhcCCCCCCEEeccCCCCC
Q 045877 470 LEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL--KNMKELRLLSLQGMSGIQELP----SEISYLTSLEILDLRACYNL 543 (801)
Q Consensus 470 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l--~~l~~L~~L~Ls~n~~~~~lp----~~i~~L~~L~~L~Ls~n~~~ 543 (801)
+++|+.|+|++|.+++ ..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+.
T Consensus 90 ~~~L~~L~l~~n~l~~-----------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 158 (310)
T 4glp_A 90 YSRLKELTLEDLKITG-----------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP 158 (310)
T ss_dssp HSCCCEEEEESCCCBS-----------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC
T ss_pred cCceeEEEeeCCEecc-----------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc
Confidence 3457777777777643 223444 667777777777776555433 34456777777777777776
Q ss_pred CCCcccccCCCCCCEEcccCCccccC--C--CcccCCCCcccccccccccCCcchhhhhhcccCcc----cccCCccCCe
Q 045877 544 DKLPDEIGKLKSLTHLDISECFLLDG--I--PKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLK----DLEKLEHLRK 615 (801)
Q Consensus 544 ~~lp~~~~~L~~L~~L~Ls~n~l~~~--~--p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~----~l~~L~~L~~ 615 (801)
+..+..++.+++|++|+|++|++.+. + +..++.+++|++|+ +++|. ....+. .++.+++|++
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~---Ls~N~-------l~~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA---LRNTG-------METPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB---CCSSC-------CCCHHHHHHHHHHHTCCCSS
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE---CCCCC-------CCchHHHHHHHHhcCCCCCE
Confidence 66667777777777777777776542 2 22246677777777 77776 222222 2467899999
Q ss_pred eEeecccccccccChhhhhcc---cCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccE
Q 045877 616 LTININSEKFQTENLSTVLAF---KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEK 692 (801)
Q Consensus 616 L~L~~n~~~~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~ 692 (801)
|+|++|.+.... +..+..+ ++|++|+|++|.+..... .++++|+.
T Consensus 229 L~Ls~N~l~~~~--p~~~~~~~~~~~L~~L~Ls~N~l~~lp~------------------------------~~~~~L~~ 276 (310)
T 4glp_A 229 LDLSHNSLRATV--NPSAPRCMWSSALNSLNLSFAGLEQVPK------------------------------GLPAKLRV 276 (310)
T ss_dssp EECTTSCCCCCC--CSCCSSCCCCTTCCCEECCSSCCCSCCS------------------------------CCCSCCSC
T ss_pred EECCCCCCCccc--hhhHHhccCcCcCCEEECCCCCCCchhh------------------------------hhcCCCCE
Confidence 999999988764 3444444 799999999999884321 11368999
Q ss_pred EEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCC
Q 045877 693 LDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNS 727 (801)
Q Consensus 693 L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~ 727 (801)
|+|++|.+..+|. +. .+++|+.|+|++|.|+.
T Consensus 277 L~Ls~N~l~~~~~-~~--~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRAPQ-PD--ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSCCC-TT--SCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCCch-hh--hCCCccEEECcCCCCCC
Confidence 9999999998876 34 89999999999999865
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-20 Score=202.59 Aligned_cols=255 Identities=15% Similarity=0.074 Sum_probs=147.2
Q ss_pred ccCceeeecCCcccCCCCh----hhhccCCCCCEEEcCCcccCCCC--CCcccccchhhhHhhcCCcCCceEeecCCCCC
Q 045877 446 RGRIETLFNVSEEFPEFKY----DWFSKLEKIKVLYLGRWQSTVDD--IPHIEIESTDYLKGLKNMKELRLLSLQGMSGI 519 (801)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~----~~f~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~ 519 (801)
+++|+.|.+.+|.+....+ ..|.++++|++|+|++|.+.... +| -....+...+..+++|++|+|++|.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~---~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP---EALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSH---HHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchh---HHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3444444444444433221 22456666777777765442110 00 000122233466677777777776554
Q ss_pred c----cCchhhcCCCCCCEEeccCCCCCCCCc----ccccCC---------CCCCEEcccCCccc-cCCC---cccCCCC
Q 045877 520 Q----ELPSEISYLTSLEILDLRACYNLDKLP----DEIGKL---------KSLTHLDISECFLL-DGIP---KKLSLLS 578 (801)
Q Consensus 520 ~----~lp~~i~~L~~L~~L~Ls~n~~~~~lp----~~~~~L---------~~L~~L~Ls~n~l~-~~~p---~~~~~L~ 578 (801)
. .+|..+..+++|++|+|++|.+....+ ..+..+ ++|++|++++|.+. ..++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 4 356666667777777777765432222 223333 67777777777765 3344 3455666
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc--cChhhhhcccCCcEEEeeccCCCCCCCCC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT--ENLSTVLAFKRLLQLKVSWGGGSANKSTK 656 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 656 (801)
+|++|+ +++|.....++. ...+..+..+++|++|+|++|.+.... ..+..+..+++|+.|+|++|.+.+...
T Consensus 188 ~L~~L~---L~~n~l~~~g~~-~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-- 261 (386)
T 2ca6_A 188 LLHTVK---MVQNGIRPEGIE-HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-- 261 (386)
T ss_dssp TCCEEE---CCSSCCCHHHHH-HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH--
T ss_pred CcCEEE---CcCCCCCHhHHH-HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH--
Confidence 677776 666651100000 011226778888999999999875211 115677888899999999888764210
Q ss_pred CCCCCCccchhchhhhhcccccccccc-cccCCCccEEEccCCCCCC-----CCcccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 657 PEPQTGRKDNFFIKTLTKFRTRVTERS-QHVESKLEKLDFQCFPDEK-----LPSWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 657 ~~~~~~~~~~~~l~~L~~~~~~l~~~~-~~~~~~L~~L~L~~n~~~~-----lp~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
.. +.... ....++|+.|+|++|.+.. +|.++. .++++|++|+|++|.+++..+
T Consensus 262 -------------~~-------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 -------------AA-------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp -------------HH-------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTSH
T ss_pred -------------HH-------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcchh
Confidence 00 01111 0113689999999998877 777763 268999999999999987763
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=180.37 Aligned_cols=208 Identities=15% Similarity=0.051 Sum_probs=165.8
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+..+++|+.|++++|.+.... .+..+++|+.|.+.+|.+..+ ..|.++++|++|+|++|.+++.
T Consensus 34 ~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~--------- 100 (272)
T 3rfs_A 34 AVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL--------- 100 (272)
T ss_dssp EECHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC---------
T ss_pred ccccccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc---------
Confidence 345678888999999999887653 466788999999999998875 3788999999999999988542
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
.+..+..+++|++|+|++|.+.+..+..++.+++|++|+|++|.+.+..+..++.+++|++|++++|.+.+..+..++
T Consensus 101 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 101 --PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred --ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 144578899999999999877666666788999999999999977766666678899999999999998877777788
Q ss_pred CCCcccccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCC
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKS 654 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 654 (801)
.+++|++|+ +++|. ....+ ..+..+++|+.|++++|.+.+. +++|+.|++..|.+.|..+
T Consensus 179 ~l~~L~~L~---L~~N~-------l~~~~~~~~~~l~~L~~L~l~~N~~~~~---------~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 179 KLTQLKDLR---LYQNQ-------LKSVPDGVFDRLTSLQYIWLHDNPWDCT---------CPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TCTTCCEEE---CCSSC-------CSCCCTTTTTTCTTCCEEECCSSCBCCC---------TTTTHHHHHHHHHTGGGBB
T ss_pred CCccCCEEE---CCCCc-------CCccCHHHHhCCcCCCEEEccCCCcccc---------CcHHHHHHHHHHhCCCccc
Confidence 899999998 88887 33444 4578899999999999976543 4578888888888887665
Q ss_pred CCC
Q 045877 655 TKP 657 (801)
Q Consensus 655 ~~~ 657 (801)
..+
T Consensus 240 ~~~ 242 (272)
T 3rfs_A 240 NSA 242 (272)
T ss_dssp CTT
T ss_pred Ccc
Confidence 443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-19 Score=195.20 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=137.3
Q ss_pred cccccccchhhcchhhhhhccc--cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 425 LFNFSLSLEEIENKAKDCAMKR--GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 425 L~~L~Ls~N~l~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++.+++++|.+. +..+..+ ..++.|.+.+|.+....+. +.++++|++|+|++|.++. ..++..+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~----------~~~~~~~ 114 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV----------STLHGIL 114 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH----------HHHHHHH
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH----------HHHHHHH
Confidence 667888888776 3444444 6788888888888777665 4468889999999887742 2367778
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCC-CCC-CCcccccCCCCCCEEcccCC-ccccC-CCcccCCCC
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACY-NLD-KLPDEIGKLKSLTHLDISEC-FLLDG-IPKKLSLLS 578 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~-~~~-~lp~~~~~L~~L~~L~Ls~n-~l~~~-~p~~~~~L~ 578 (801)
..+++|++|+|++|.+.+..+..++.+++|++|+|++|. +.+ .++..+..+++|++|++++| .+.+. ++..+..++
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 888899999999887776778888888899999998884 433 36666778888888888888 66543 455566666
Q ss_pred -cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccc-ccccccChhhhhcccCCcEEEeeccC
Q 045877 579 -KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS-EKFQTENLSTVLAFKRLLQLKVSWGG 648 (801)
Q Consensus 579 -~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~-~~~~~~~~~~l~~l~~L~~L~L~~n~ 648 (801)
+|++|+ +++|.. .+.....+..+..+++|+.|++++|. ++... +..+..+++|++|++++|.
T Consensus 195 ~~L~~L~---l~~~~~---~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 195 ETITQLN---LSGYRK---NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCEEE---CCSCGG---GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCT
T ss_pred cCCCEEE---eCCCcc---cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCC
Confidence 666666 555520 00112233445566666666666666 33333 4455666666666666664
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-19 Score=210.44 Aligned_cols=349 Identities=14% Similarity=0.020 Sum_probs=191.5
Q ss_pred hhccccccccccchhhcchhhhhhccc--cCceeeecCCcc-cCC-CChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 420 EKIKKLFNFSLSLEEIENKAKDCAMKR--GRIETLFNVSEE-FPE-FKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~--~~L~~L~l~~n~-i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
..+++|++|+|++|.+++.....+... .+|+.|.+.++. +.. .....+.++++|++|+|++|.+++.. .
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-------~ 181 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD-------G 181 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC-------S
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc-------h
Confidence 366777778888777776666555442 347777776554 111 11222346777777777777664321 0
Q ss_pred hhhhHhhcCCcCCceEeecCCCCC----ccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc---c
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGI----QELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL---D 568 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~----~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~---~ 568 (801)
..++..+..+++|++|+|++|.+. +.++..+.++++|++|+|++|.+.+ +|..+..+++|++|+++.+... .
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchH
Confidence 114445566777777777776554 2344555667777777777764433 5666677777777777643222 1
Q ss_pred CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccC
Q 045877 569 GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGG 648 (801)
Q Consensus 569 ~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~ 648 (801)
..+..+..+++|+.|+ +.... ....+..+..+++|++|+|++|.+.... ....+..+++|+.|+++. .
T Consensus 261 ~~~~~l~~~~~L~~L~---l~~~~-------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~-~ 328 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLG---LSYMG-------PNEMPILFPFAAQIRKLDLLYALLETED-HCTLIQKCPNLEVLETRN-V 328 (592)
T ss_dssp TSSSCCCCCTTCCEEE---ETTCC-------TTTGGGGGGGGGGCCEEEETTCCCCHHH-HHHHHTTCTTCCEEEEEG-G
T ss_pred HHHHHhhccccccccC---ccccc-------hhHHHHHHhhcCCCcEEecCCCcCCHHH-HHHHHHhCcCCCEEeccC-c
Confidence 2333455556666665 33332 2234445556666666666666643322 012345566666666652 2
Q ss_pred CCCCCCCCCCCCCCccchhchhhhhccc-----------ccc-----cccccccCCCccEEEccCCCCCC-CCcccCCCC
Q 045877 649 GSANKSTKPEPQTGRKDNFFIKTLTKFR-----------TRV-----TERSQHVESKLEKLDFQCFPDEK-LPSWVHPYS 711 (801)
Q Consensus 649 l~~~~~~~~~~~~~~~~~~~l~~L~~~~-----------~~l-----~~~~~~~~~~L~~L~L~~n~~~~-lp~~l~~~~ 711 (801)
+........ ......++.|+..+ +.+ ...... .++|++|+++++.++. .+..+. ..
T Consensus 329 ~~~~~l~~~-----~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~l~~~~~~~l~-~~ 401 (592)
T 3ogk_B 329 IGDRGLEVL-----AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-CQELEYMAVYVSDITNESLESIG-TY 401 (592)
T ss_dssp GHHHHHHHH-----HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH-CTTCSEEEEEESCCCHHHHHHHH-HH
T ss_pred cCHHHHHHH-----HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh-CccCeEEEeecCCccHHHHHHHH-hh
Confidence 211000000 00001122222221 111 111111 3689999997765542 112222 24
Q ss_pred CCCccEEEee----CCcCCCCCC--------Ccccccceecc-------------------cccccccccccccc-----
Q 045877 712 FKNLKNLYIR----GGRLNSLEG--------SEWETVKVLRL-------------------KYLNELKIDWKGLQ----- 755 (801)
Q Consensus 712 l~~L~~L~L~----~n~l~~~~~--------~~f~~L~~l~L-------------------~~L~~L~l~~n~l~----- 755 (801)
+++|+.|+|+ .|.+++.+. ..+++|+.+++ ++|+.|++++|.++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 8899999997 556776532 23566666665 23666677777664
Q ss_pred ---CcCCCCceeeccCCCCCcc--cCCCCCcccccCCcceEeCCCcccc
Q 045877 756 ---ELFPKLEYLEKFKCHKVTL--CPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 756 ---~~~p~L~~L~l~~c~~L~~--lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
..+++|++|++++|+ ++. ++. .+..+++|++|++++|++.
T Consensus 482 ~~~~~~~~L~~L~l~~n~-l~~~~~~~---~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCC-FSERAIAA---AVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHTCCTTCCEEEEESCC-CBHHHHHH---HHHHCSSCCEEEEESCBCC
T ss_pred HHHhcCcccCeeeccCCC-CcHHHHHH---HHHhcCccCeeECcCCcCC
Confidence 345667777777775 432 111 2346889999999999865
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=174.62 Aligned_cols=198 Identities=15% Similarity=0.062 Sum_probs=123.1
Q ss_pred CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccC-CCCCCCCcc
Q 045877 471 EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRA-CYNLDKLPD 548 (801)
Q Consensus 471 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~-n~~~~~lp~ 548 (801)
.+|+.|+|++|+++... +..|..+++|++|+|++|..++.++ ..|.++++|++|+|++ |.+....+.
T Consensus 31 ~~l~~L~l~~n~l~~i~-----------~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-----------SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TTCCEEEEESCCCSEEC-----------TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CcccEEEEeCCcceEEC-----------HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 37888888888774321 3357778888888888875344444 4677788888888887 655555456
Q ss_pred cccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecc-cccccc
Q 045877 549 EIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININ-SEKFQT 627 (801)
Q Consensus 549 ~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n-~~~~~~ 627 (801)
.|.++++|++|++++|.+.+ +|. +..+.+|+ .|++|++++| .+....
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~------------------------------~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD------------------------------IFFILEITDNPYMTSIP 147 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC------------------------------SEEEEEEESCTTCCEEC
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccc------------------------------cccEEECCCCcchhhcC
Confidence 67777888888888777653 443 43333333 1226666666 555444
Q ss_pred cChhhhhcccCCc-EEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCC-CCCCCc
Q 045877 628 ENLSTVLAFKRLL-QLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFP-DEKLPS 705 (801)
Q Consensus 628 ~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~-~~~lp~ 705 (801)
...|.++++|+ .|++++|.+....... ... ++|+.|+|++|. +..+|.
T Consensus 148 --~~~~~~l~~L~~~L~l~~n~l~~i~~~~---------------------------~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 148 --VNAFQGLCNETLTLKLYNNGFTSVQGYA---------------------------FNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp --TTTTTTTBSSEEEEECCSCCCCEECTTT---------------------------TTT-CEEEEEECTTCTTCCEECT
T ss_pred --cccccchhcceeEEEcCCCCCcccCHhh---------------------------cCC-CCCCEEEcCCCCCcccCCH
Confidence 44566677777 7777777665322111 111 467777777773 666655
Q ss_pred ccCCCCC-CCccEEEeeCCcCCCCCCCcccccceeccc
Q 045877 706 WVHPYSF-KNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742 (801)
Q Consensus 706 ~l~~~~l-~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~ 742 (801)
..+ ..+ ++|++|+|++|.+++++...|++|+.|.+.
T Consensus 198 ~~~-~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~ 234 (239)
T 2xwt_C 198 DAF-GGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234 (239)
T ss_dssp TTT-TTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECT
T ss_pred HHh-hccccCCcEEECCCCccccCChhHhccCceeecc
Confidence 433 366 778888888888777766555555444443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-19 Score=195.36 Aligned_cols=261 Identities=12% Similarity=0.093 Sum_probs=172.9
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCCh----hhhccCC-CCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKY----DWFSKLE-KIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~f~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
+++|+.|++++..|..+....+|+.|++.+|.+..... ..|.+++ +|++|+|++|.++... ...+...
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-------~~~l~~~ 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN-------SDELVQI 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC-------HHHHHHH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH-------HHHHHHH
Confidence 46788899999888888777779999999999988877 7788888 8999999999885422 0122233
Q ss_pred hcCC-cCCceEeecCCCCCccCchhh----cCC-CCCCEEeccCCCCCCCCccccc----C-CCCCCEEcccCCccccC-
Q 045877 502 LKNM-KELRLLSLQGMSGIQELPSEI----SYL-TSLEILDLRACYNLDKLPDEIG----K-LKSLTHLDISECFLLDG- 569 (801)
Q Consensus 502 l~~l-~~L~~L~Ls~n~~~~~lp~~i----~~L-~~L~~L~Ls~n~~~~~lp~~~~----~-L~~L~~L~Ls~n~l~~~- 569 (801)
+... ++|++|+|++|.+.+..+..+ ..+ ++|++|+|++|.+....+..+. . .++|++|+|++|.+...
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 3333 889999999987665555544 444 8899999999876655554433 3 26899999999987743
Q ss_pred ---CCcccCCCC-cccccccccccCCcchhhhhhcccC-c----ccccCC-ccCCeeEeeccccccccc--Chhhhhc-c
Q 045877 570 ---IPKKLSLLS-KLQVLKGFVISDHAEDDRRWKRWCS-L----KDLEKL-EHLRKLTININSEKFQTE--NLSTVLA-F 636 (801)
Q Consensus 570 ---~p~~~~~L~-~L~~L~~~~l~~n~~~~~~~~~~~~-~----~~l~~L-~~L~~L~L~~n~~~~~~~--~~~~l~~-l 636 (801)
++..+..+. +|++|+ +++|. .... + ..+..+ ++|++|+|++|.+..... .+..+.. .
T Consensus 155 ~~~l~~~l~~~~~~L~~L~---Ls~n~-------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLN---LRGNN-------LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEE---CTTSC-------GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCccccEee---ecCCC-------CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 333344554 778877 77776 2211 1 234445 488888888888765331 1344544 3
Q ss_pred cCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCC--------cccC
Q 045877 637 KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLP--------SWVH 708 (801)
Q Consensus 637 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp--------~~l~ 708 (801)
++|+.|+|++|.+.+..... +...... .++|+.|+|++|.+..+. ..+.
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~----------------------l~~~~~~-l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~ 281 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLEN----------------------LKLLKDS-LKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHH----------------------HHHTTTT-TTTCSEEEEEHHHHTTCCHHHHHHHHTTST
T ss_pred CCceEEECcCCCCCcHHHHH----------------------HHHHHhc-CCCccEEEeccCCccccCHHHHHHHHHHhc
Confidence 48888888888776543210 0111111 257888888887633333 2333
Q ss_pred CCCCCCccEEEeeCCcCCCCC
Q 045877 709 PYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 709 ~~~l~~L~~L~L~~n~l~~~~ 729 (801)
.+++|++|+|++|.+....
T Consensus 282 --~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 282 --NIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp --TCCEEEEECTTSCBCCGGG
T ss_pred --cCCceEEEecCCCcCCCcc
Confidence 7778888888888876553
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=174.95 Aligned_cols=181 Identities=15% Similarity=0.071 Sum_probs=123.3
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcc-cCCCCCCcccccchhhhHhhcCCcCCceEeecC-CCCCccCchh
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDYLKGLKNMKELRLLSLQG-MSGIQELPSE 525 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~-n~~~~~lp~~ 525 (801)
.++.|.+.+|.+..+++..|.++++|++|+|++|. ++.. -+..|.++++|++|+|++ |.+.+..+..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-----------~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-----------ESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-----------CTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-----------CHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 56677777777777777777777777777777775 5321 123567777777777776 5444444456
Q ss_pred hcCCCCCCEEeccCCCCCCCCcccccCCCCCC---EEcccCC-ccccCCCcccCCCCccc-ccccccccCCcchhhhhhc
Q 045877 526 ISYLTSLEILDLRACYNLDKLPDEIGKLKSLT---HLDISEC-FLLDGIPKKLSLLSKLQ-VLKGFVISDHAEDDRRWKR 600 (801)
Q Consensus 526 i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~---~L~Ls~n-~l~~~~p~~~~~L~~L~-~L~~~~l~~n~~~~~~~~~ 600 (801)
|.++++|++|+|++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|+ +++|. .
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~---l~~n~-------l 168 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK---LYNNG-------F 168 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE---CCSCC-------C
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE---cCCCC-------C
Confidence 7777778888887775544 665 67777777 7888877 66655555577777777 777 66666 3
Q ss_pred ccCcccccCCccCCeeEeeccc-ccccccChhhhhcc-cCCcEEEeeccCCCCCC
Q 045877 601 WCSLKDLEKLEHLRKLTININS-EKFQTENLSTVLAF-KRLLQLKVSWGGGSANK 653 (801)
Q Consensus 601 ~~~~~~l~~L~~L~~L~L~~n~-~~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~ 653 (801)
..++......++|+.|++++|+ +.... ...|.++ ++|+.|++++|.+.+..
T Consensus 169 ~~i~~~~~~~~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 169 TSVQGYAFNGTKLDAVYLNKNKYLTVID--KDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp CEECTTTTTTCEEEEEECTTCTTCCEEC--TTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred cccCHhhcCCCCCCEEEcCCCCCcccCC--HHHhhccccCCcEEECCCCccccCC
Confidence 3344433333788888888884 76554 5667778 88888888888877543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=179.67 Aligned_cols=197 Identities=20% Similarity=0.156 Sum_probs=117.2
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp 547 (801)
..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+ ..++. +..+++|++|+|++|.+. .++
T Consensus 38 ~~l~~L~~L~l~~~~i~------------~l~-~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~l~-~~~ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT------------TIE-GVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLK-NVS 101 (308)
T ss_dssp HHHHTCCEEECTTSCCC------------CCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCCCS-CCG
T ss_pred HHcCCcCEEEeeCCCcc------------Cch-hhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCcCC-Cch
Confidence 34445555555555552 122 345555555555555532 33333 555556666666655432 232
Q ss_pred ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc
Q 045877 548 DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 548 ~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
.+..+++|++|++++|.+.+ ++. +..+++|++|+ +++|. ....+ .+..+++|+.|++++|.+....
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~---l~~n~-------l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY---LDLNQ-------ITNIS-PLAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE---CCSSC-------CCCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred -hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE---CCCCc-------cCcCc-cccCCCCccEEEccCCcCCCCh
Confidence 45555666666666665543 222 55555666655 55554 22222 2667777888888888776543
Q ss_pred cChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCccc
Q 045877 628 ENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWV 707 (801)
Q Consensus 628 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l 707 (801)
.+..+++|+.|++++|.+.+..+ ... .++|+.|+|++|.+..++. +
T Consensus 168 ----~l~~l~~L~~L~l~~n~l~~~~~----------------------------l~~-l~~L~~L~L~~N~l~~~~~-l 213 (308)
T 1h6u_A 168 ----PLANLSKLTTLKADDNKISDISP----------------------------LAS-LPNLIEVHLKNNQISDVSP-L 213 (308)
T ss_dssp ----GGTTCTTCCEEECCSSCCCCCGG----------------------------GGG-CTTCCEEECTTSCCCBCGG-G
T ss_pred ----hhcCCCCCCEEECCCCccCcChh----------------------------hcC-CCCCCEEEccCCccCcccc-c
Confidence 27778888888888887764321 111 3678888888888877764 4
Q ss_pred CCCCCCCccEEEeeCCcCCCCCC
Q 045877 708 HPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 708 ~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
. .+++|+.|+|++|.+++.+.
T Consensus 214 ~--~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 214 A--NTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp T--TCTTCCEEEEEEEEEECCCE
T ss_pred c--CCCCCCEEEccCCeeecCCe
Confidence 4 88888888888888877654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-19 Score=194.11 Aligned_cols=268 Identities=11% Similarity=0.047 Sum_probs=190.6
Q ss_pred eecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc-CCceEeecCCCCCccCchhhcCC-
Q 045877 452 LFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK-ELRLLSLQGMSGIQELPSEISYL- 529 (801)
Q Consensus 452 L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~-~L~~L~Ls~n~~~~~lp~~i~~L- 529 (801)
+.+..|.+.+..+.++...++|+.|+|++|.++... ...+...+..++ +|++|+|++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 75 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIS-------TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHH-------HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence 456778888888888888888999999999986432 123347788898 99999999997776667777765
Q ss_pred ----CCCCEEeccCCCCCCCCccccc----CC-CCCCEEcccCCccccCCCcc----cCC-CCcccccccccccCCcchh
Q 045877 530 ----TSLEILDLRACYNLDKLPDEIG----KL-KSLTHLDISECFLLDGIPKK----LSL-LSKLQVLKGFVISDHAEDD 595 (801)
Q Consensus 530 ----~~L~~L~Ls~n~~~~~lp~~~~----~L-~~L~~L~Ls~n~l~~~~p~~----~~~-L~~L~~L~~~~l~~n~~~~ 595 (801)
++|++|+|++|.+.+..+..+. .+ ++|++|++++|.+....+.. +.. .++|++|+ +++|....
T Consensus 76 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~---Ls~N~l~~ 152 (362)
T 3goz_A 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN---LRGNDLGI 152 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE---CTTSCGGG
T ss_pred hccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE---ccCCcCCH
Confidence 9999999999987766666444 44 89999999999987655544 344 36899999 88887110
Q ss_pred hhhhcccCcccccCCc-cCCeeEeecccccccccChh----hhhcc-cCCcEEEeeccCCCCCCCCCCCCCCCccchhch
Q 045877 596 RRWKRWCSLKDLEKLE-HLRKLTININSEKFQTENLS----TVLAF-KRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFI 669 (801)
Q Consensus 596 ~~~~~~~~~~~l~~L~-~L~~L~L~~n~~~~~~~~~~----~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l 669 (801)
. ....+...+..++ +|++|+|++|.+.... .. .+..+ ++|+.|+|++|.+.+....
T Consensus 153 ~--~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------------- 214 (362)
T 3goz_A 153 K--SSDELIQILAAIPANVNSLNLRGNNLASKN--CAELAKFLASIPASVTSLDLSANLLGLKSYA-------------- 214 (362)
T ss_dssp S--CHHHHHHHHHTSCTTCCEEECTTSCGGGSC--HHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--------------
T ss_pred H--HHHHHHHHHhcCCccccEeeecCCCCchhh--HHHHHHHHHhCCCCCCEEECCCCCCChhHHH--------------
Confidence 0 0012234455665 9999999999987665 43 34455 5999999999988753210
Q ss_pred hhhhcccccccccccccCCCccEEEccCCCCCCCCcc---cCCCCCCCccEEEeeCCcCCCCCCCcccccc--eeccccc
Q 045877 670 KTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSW---VHPYSFKNLKNLYIRGGRLNSLEGSEWETVK--VLRLKYL 744 (801)
Q Consensus 670 ~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~---l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~--~l~L~~L 744 (801)
. +.......+++|+.|+|++|.+...+.. .....+++|++|+|++|.+.++....+..+. .-.+.+|
T Consensus 215 -~-------l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 215 -E-------LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp -H-------HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred -H-------HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 0 1112222246899999999988776541 1114889999999999998777653221111 1256778
Q ss_pred ccccccccccc
Q 045877 745 NELKIDWKGLQ 755 (801)
Q Consensus 745 ~~L~l~~n~l~ 755 (801)
+.|++++|.+.
T Consensus 287 ~~LdL~~N~l~ 297 (362)
T 3goz_A 287 ILVDKNGKEIH 297 (362)
T ss_dssp EEECTTSCBCC
T ss_pred EEEecCCCcCC
Confidence 88888888876
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-19 Score=189.48 Aligned_cols=250 Identities=17% Similarity=0.119 Sum_probs=188.0
Q ss_pred cCceeeecCCcccCCCChhhhccC--CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc-Cc
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKL--EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE-LP 523 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-lp 523 (801)
..++.+.+..+.+. +..+..+ +.++.|++++|.+.+. +..+..+++|++|+|++|.+.+. +|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~------------~~~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP------------LAEHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC------------CCSCCCCBCCCEEECTTCEECHHHHH
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc------------chhhccCCCCCEEEccCCCcCHHHHH
Confidence 34778888888765 5677777 8999999999998542 23366899999999999976655 88
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCC-cccc-CCCcccCCCCcccccccccccCC-cchhhhhhc
Q 045877 524 SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISEC-FLLD-GIPKKLSLLSKLQVLKGFVISDH-AEDDRRWKR 600 (801)
Q Consensus 524 ~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n-~l~~-~~p~~~~~L~~L~~L~~~~l~~n-~~~~~~~~~ 600 (801)
..+..+++|++|+|++|.+.+..+..++.+++|++|++++| .+.+ .++..+..+++|++|+ ++++ . +..
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~---l~~~~~-----l~~ 183 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN---LSWCFD-----FTE 183 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE---CCCCTT-----CCH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc---CCCCCC-----cCh
Confidence 88999999999999999877788888999999999999999 5654 3677788899999999 7777 5 111
Q ss_pred ccCcccccCCc-cCCeeEeeccc--cc-ccccChhhhhcccCCcEEEeeccC-CCCCCCCCCCCCCCccchhchhhhhcc
Q 045877 601 WCSLKDLEKLE-HLRKLTININS--EK-FQTENLSTVLAFKRLLQLKVSWGG-GSANKSTKPEPQTGRKDNFFIKTLTKF 675 (801)
Q Consensus 601 ~~~~~~l~~L~-~L~~L~L~~n~--~~-~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~l~~L~~~ 675 (801)
...+..+..++ +|++|++++|. +. ... +..+..+++|+.|++++|. +++...
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~l~~~~~--------------------- 240 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDL--STLVRRCPNLVHLDLSDSVMLKNDCF--------------------- 240 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHH--HHHHHHCTTCSEEECTTCTTCCGGGG---------------------
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHH--HHHHhhCCCCCEEeCCCCCcCCHHHH---------------------
Confidence 12455678899 99999999995 33 222 5667889999999999997 443211
Q ss_pred cccccccccccCCCccEEEccCCCCCCCCc---ccCCCCCCCccEEEeeCCcCCCCCCCcccccceecc-cccccccccc
Q 045877 676 RTRVTERSQHVESKLEKLDFQCFPDEKLPS---WVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRL-KYLNELKIDW 751 (801)
Q Consensus 676 ~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~---~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L-~~L~~L~l~~ 751 (801)
.. ... .++|+.|+|++|.. ..+. .+. .+++|++|+|++| +....+. .+ ..|+.|++++
T Consensus 241 ----~~-l~~-l~~L~~L~l~~~~~-~~~~~~~~l~--~~~~L~~L~l~~~----i~~~~~~-----~l~~~l~~L~l~~ 302 (336)
T 2ast_B 241 ----QE-FFQ-LNYLQHLSLSRCYD-IIPETLLELG--EIPTLKTLQVFGI----VPDGTLQ-----LLKEALPHLQINC 302 (336)
T ss_dssp ----GG-GGG-CTTCCEEECTTCTT-CCGGGGGGGG--GCTTCCEEECTTS----SCTTCHH-----HHHHHSTTSEESC
T ss_pred ----HH-HhC-CCCCCEeeCCCCCC-CCHHHHHHHh--cCCCCCEEeccCc----cCHHHHH-----HHHhhCcceEEec
Confidence 11 112 27899999999862 2233 344 8999999999999 3333332 22 4578888888
Q ss_pred ccccCcCCC
Q 045877 752 KGLQELFPK 760 (801)
Q Consensus 752 n~l~~~~p~ 760 (801)
|.+++..|.
T Consensus 303 n~l~~~~~~ 311 (336)
T 2ast_B 303 SHFTTIARP 311 (336)
T ss_dssp CCSCCTTCS
T ss_pred ccCccccCC
Confidence 888866664
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=169.46 Aligned_cols=146 Identities=18% Similarity=0.074 Sum_probs=74.8
Q ss_pred cccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcC
Q 045877 425 LFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN 504 (801)
Q Consensus 425 L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~ 504 (801)
.+.++++++.++.++.... ..++.|.+.+|.+..+.+..|.++++|++|+|++|.+++. .+..|..
T Consensus 16 ~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~~~~~~~ 81 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-----------SAGVFDD 81 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-----------CTTTTTT
T ss_pred CeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-----------CHhHhcc
Confidence 3455666666654443221 3455555555555555555555555666666665555321 1334455
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+..+..|+.+++|++|+
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 55555555555544433334455555555555555544433333445555555555555555433333344444444444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=167.20 Aligned_cols=180 Identities=13% Similarity=0.027 Sum_probs=154.1
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
...+.+...++.+..++.... +.|+.|+|++|.+++. .+..|.++++|++|+|++|.+.+..+..+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATL-----------SDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCC-----------CTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCcc-----------CHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 456778888898888765443 5899999999999643 24578999999999999998877777889
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcc-
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLK- 605 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~- 605 (801)
..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|++|+ +++|. ....+.
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---Ls~N~-------l~~~~~~ 149 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR---LNTNQ-------LQSIPAG 149 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSC-------CCCCCTT
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE---CcCCc-------CCccCHH
Confidence 9999999999999988877777889999999999999999876666789999999999 88888 445554
Q ss_pred cccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 606 DLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 606 ~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
.|..+++|++|+|++|.+.... +..+..+++|+.|+|++|.+...
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HcCcCcCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCceeCC
Confidence 6899999999999999998776 66789999999999999998764
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-18 Score=189.62 Aligned_cols=273 Identities=11% Similarity=-0.002 Sum_probs=194.7
Q ss_pred hhhhhhhccccccccccchhhcchhhh----hhccccCceeeecCCcccCCC---Chhh-------hccCCCCCEEEcCC
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKD----CAMKRGRIETLFNVSEEFPEF---KYDW-------FSKLEKIKVLYLGR 480 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~~~L~~L~l~~n~i~~~---~~~~-------f~~l~~L~~L~Ls~ 480 (801)
....+..+++|+.|+|++|+|+...+. .+..+++|+.|.+.+|.+..+ .+.. |..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 455678889999999999999887554 466899999999988655432 3333 47899999999999
Q ss_pred cccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc----hhhcCC---------CCCCEEeccCCCCC-CCC
Q 045877 481 WQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP----SEISYL---------TSLEILDLRACYNL-DKL 546 (801)
Q Consensus 481 n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp----~~i~~L---------~~L~~L~Ls~n~~~-~~l 546 (801)
|.++... ...++..+..+++|++|+|++|.+....+ ..+..+ ++|++|+|++|.+. ..+
T Consensus 104 n~l~~~~-------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 104 NAFGPTA-------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CCCCTTT-------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred CcCCHHH-------HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 9986422 12478889999999999999997643333 334444 99999999999776 445
Q ss_pred c---ccccCCCCCCEEcccCCcccc-----CCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEe
Q 045877 547 P---DEIGKLKSLTHLDISECFLLD-----GIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTI 618 (801)
Q Consensus 547 p---~~~~~L~~L~~L~Ls~n~l~~-----~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L 618 (801)
+ ..+..+++|++|++++|.+.. .++..+..+++|++|+ +++|..... ....++..+..+++|++|+|
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~---Ls~n~l~~~--g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD---LQDNTFTHL--GSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE---CCSSCCHHH--HHHHHHHHGGGCTTCCEEEC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEE---CcCCCCCcH--HHHHHHHHHccCCCcCEEEC
Confidence 5 467789999999999998862 3444788999999999 888871110 01335667889999999999
Q ss_pred ecccccccc--cChhhhhc--ccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEE
Q 045877 619 NINSEKFQT--ENLSTVLA--FKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLD 694 (801)
Q Consensus 619 ~~n~~~~~~--~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~ 694 (801)
++|.+.... ..+..+.. +++|+.|+|++|.+.+.. +.. ++.......++|+.|+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g---------------~~~-------l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA---------------VRT-------LKTVIDEKMPDLLFLE 309 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH---------------HHH-------HHHHHHHHCTTCCEEE
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH---------------HHH-------HHHHHHhcCCCceEEE
Confidence 999987653 11345533 899999999999876410 000 1111111136999999
Q ss_pred ccCCCCCCCCc---ccCCCCCCCccEEEeeC
Q 045877 695 FQCFPDEKLPS---WVHPYSFKNLKNLYIRG 722 (801)
Q Consensus 695 L~~n~~~~lp~---~l~~~~l~~L~~L~L~~ 722 (801)
|++|.+..... .+. ..++.++.+++..
T Consensus 310 l~~N~l~~~~~~~~~l~-~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 310 LNGNRFSEEDDVVDEIR-EVFSTRGRGELDE 339 (386)
T ss_dssp CTTSBSCTTSHHHHHHH-HHHHHHTCCEECC
T ss_pred ccCCcCCcchhHHHHHH-HHhhhcCcchhhh
Confidence 99998876552 222 2345555555544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-17 Score=175.97 Aligned_cols=215 Identities=18% Similarity=0.083 Sum_probs=138.1
Q ss_pred CEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcc-ccc
Q 045877 474 KVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPD-EIG 551 (801)
Q Consensus 474 ~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~-~~~ 551 (801)
++++.++++++ .+|..+ ..+|++|+|++|.+ ..+| .+|.+|++|++|+|++|.+.+.+|. .|.
T Consensus 12 ~~v~C~~~~Lt------------~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVT------------EIPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTTCC------------SCCTTC--CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCCCC------------ccCcCc--CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 67778887774 344444 35788888888754 4555 4678888888888888877666654 567
Q ss_pred CCCCCCE-EcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeec-cccccccc
Q 045877 552 KLKSLTH-LDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTINI-NSEKFQTE 628 (801)
Q Consensus 552 ~L~~L~~-L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~-n~~~~~~~ 628 (801)
++++|++ +.+++|++....|..|..+++|++|+ +++|. ....+ ..+....++..|++.+ +.+....
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~---l~~n~-------l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~- 145 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL---ISNTG-------IKHLPDVHKIHSLQKVLLDIQDNINIHTIE- 145 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE---EEEEC-------CSSCCCCTTCCBSSCEEEEEESCTTCCEEC-
T ss_pred cchhhhhhhcccCCcccccCchhhhhcccccccc---ccccc-------cccCCchhhcccchhhhhhhcccccccccc-
Confidence 7877765 55566777766677778888888887 66666 33333 2344555666777755 3444333
Q ss_pred Chhhhhccc-CCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEcc-CCCCCCCCcc
Q 045877 629 NLSTVLAFK-RLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQ-CFPDEKLPSW 706 (801)
Q Consensus 629 ~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~-~n~~~~lp~~ 706 (801)
...|..+. .|+.|++++|.+.......+ . ..+|+.|++. +|.++.+|..
T Consensus 146 -~~~f~~~~~~l~~L~L~~N~i~~i~~~~f---------------------------~-~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 146 -RNSFVGLSFESVILWLNKNGIQEIHNSAF---------------------------N-GTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp -TTSSTTSBSSCEEEECCSSCCCEECTTSS---------------------------T-TEEEEEEECTTCTTCCCCCTT
T ss_pred -ccchhhcchhhhhhccccccccCCChhhc---------------------------c-ccchhHHhhccCCcccCCCHH
Confidence 34445543 57777887777764332211 1 1467777776 4677777765
Q ss_pred cCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccc
Q 045877 707 VHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYL 744 (801)
Q Consensus 707 l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L 744 (801)
.+ ..+++|++|+|++|+|+.++...|.+|+.|...++
T Consensus 197 ~f-~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 197 VF-HGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp TT-TTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred Hh-ccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence 43 47788888888888887777766655555544333
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-18 Score=214.89 Aligned_cols=187 Identities=9% Similarity=0.142 Sum_probs=139.9
Q ss_pred CCCCcceeecCcchhhHhhhhccceeeCCC-CChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhccCCcc
Q 045877 90 KISSSEQIKKNEEKDASEADQSVQVHPLNQ-LDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQATGSKS 165 (801)
Q Consensus 90 ~~~s~~~vttr~~~~~~~~~~~~~~~~l~~-l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (801)
..+++|+||||.+.++..+....+++++.. |+.+| ||...++...
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~------------------------------- 303 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK------------------------------- 303 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-------------------------------
T ss_pred cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-------------------------------
Confidence 468899999999999865544678999996 99998 7776663211
Q ss_pred chhhhhhhHHHHHHHHHHHHHhCCCCCcccCCCCC---chhHHhhhccCCC---CCCCCccccccccchhHHHHHHhhhc
Q 045877 166 VQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDD---SDAQQRRRINQSK---DLPNMADKTRFKEHDFFIEFKKIFQS 239 (801)
Q Consensus 166 ~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~~l~~---~~~~~W~~~l~~~---~~~~~~~~~~~~~~~i~~~L~~SYd~ 239 (801)
+++.+++++|+++|+|+|||| +++|+ .....|+.+++.. ...............+..+|.+||+.
T Consensus 304 --------~~~~~~~~~i~~~~~glPLal-~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 374 (1249)
T 3sfz_A 304 --------EDLPAEAHSIIKECKGSPLVV-SLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374 (1249)
T ss_dssp --------TTCCTHHHHHHHHTTTCHHHH-HHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHT
T ss_pred --------hhCcHHHHHHHHHhCCCHHHH-HHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHh
Confidence 223457899999999999996 33333 1224565544331 11111111111113699999999999
Q ss_pred cC-CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCCccceEEec
Q 045877 240 LG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVANSFRMS 318 (801)
Q Consensus 240 L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mH 318 (801)
|+ ++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++|||+.... +...+|+||
T Consensus 375 L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------------~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h 438 (1249)
T 3sfz_A 375 LREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------------TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLH 438 (1249)
T ss_dssp SCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------------HHHHHHHHHHHHHTTSCEEEES---SSSEEEECC
T ss_pred CCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------------HHHHHHHHHHHHhccceEEecC---CCceEEEec
Confidence 99 999999999999999999999999999554 4678999999999999986543 444579999
Q ss_pred hhHHHHHHHHhhcC
Q 045877 319 PLVRSAVITLAKEN 332 (801)
Q Consensus 319 dlv~dl~~~~a~~e 332 (801)
|+||++|+..+.+|
T Consensus 439 ~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 439 DLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred HHHHHHHHhhhhHH
Confidence 99999999998775
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=167.44 Aligned_cols=175 Identities=21% Similarity=0.229 Sum_probs=109.5
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
..+.++++|+.|++++|.|.... .+..+++|+.|.+.+|.+..+.+ |.++++|++|+|++|.++.
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~----------- 104 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD----------- 104 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----------
T ss_pred cchhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-----------
Confidence 44566777777777777776652 25566677777777777766654 6677777777777776632
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCC
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSL 576 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~ 576 (801)
+ ..+..+++|++|+|++|.+. .+ ..+..+++|++|+|++|.+.+. ..+..+++|++|++++|.+.+..+ +..
T Consensus 105 -~-~~l~~l~~L~~L~L~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 105 -L-SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp -G-GGGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -C-hhhccCCCCCEEECCCCcCC-CC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence 2 23666777777777776433 33 3466677777777777654443 456667777777777776654433 666
Q ss_pred CCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccc
Q 045877 577 LSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKF 625 (801)
Q Consensus 577 L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~ 625 (801)
+++|+.|+ +++|. .... ..+..+++|+.|++++|.+..
T Consensus 177 l~~L~~L~---L~~N~-------i~~l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLY---LSKNH-------ISDL-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEE---CCSSC-------CCBC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEE---CCCCc-------CCCC-hhhccCCCCCEEECcCCcccC
Confidence 66666666 66665 2222 346666666666666666544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-17 Score=185.93 Aligned_cols=194 Identities=20% Similarity=0.170 Sum_probs=145.9
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~ 551 (801)
+|+.|+|++|.+++ +|..+ .++|++|+|++|.+ ..+| ..+++|++|+|++|.+.+ +|. +.
T Consensus 60 ~L~~L~Ls~n~L~~------------lp~~l--~~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS------------LPDNL--PPQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLST-LPE-LP 119 (571)
T ss_dssp TCSEEECCSSCCSC------------CCSCC--CTTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSC-CCC-CC
T ss_pred CccEEEeCCCCCCc------------cCHhH--cCCCCEEECcCCCC-cccc---cccCCCCEEEccCCCCCC-cch-hh
Confidence 88999999998853 33333 36899999999854 4777 557899999999986665 777 66
Q ss_pred CCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChh
Q 045877 552 KLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLS 631 (801)
Q Consensus 552 ~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~ 631 (801)
+ +|++|+|++|.+.+ +|. .+++|+.|+ +++|. +..++. .+++|++|+|++|.+.... .
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~---Ls~N~-------l~~lp~---~l~~L~~L~Ls~N~L~~lp---~ 177 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE---LPALLEYIN---ADNNQ-------LTMLPE---LPTSLEVLSVRNNQLTFLP---E 177 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC---CCTTCCEEE---CCSSC-------CSCCCC---CCTTCCEEECCSSCCSCCC---C
T ss_pred c--CCCEEECCCCcCCC-CCC---cCccccEEe---CCCCc-------cCcCCC---cCCCcCEEECCCCCCCCcc---h
Confidence 5 89999999998876 666 678888888 88887 444444 5789999999999988743 3
Q ss_pred hhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCC
Q 045877 632 TVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYS 711 (801)
Q Consensus 632 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~ 711 (801)
|. ++|+.|+|++|.++.... + .......+..|+.|+|++|.+..+|.+++ .
T Consensus 178 -l~--~~L~~L~Ls~N~L~~lp~--~----------------------~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~ 228 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLESLPA--V----------------------PVRNHHSEETEIFFRCRENRITHIPENIL--S 228 (571)
T ss_dssp -CC--TTCCEEECCSSCCSSCCC--C----------------------C--------CCEEEECCSSCCCCCCGGGG--G
T ss_pred -hh--CCCCEEECcCCCCCchhh--H----------------------HHhhhcccccceEEecCCCcceecCHHHh--c
Confidence 44 899999999999884332 1 00000112345999999999999999988 7
Q ss_pred CCCccEEEeeCCcCCCCCCCccccc
Q 045877 712 FKNLKNLYIRGGRLNSLEGSEWETV 736 (801)
Q Consensus 712 l~~L~~L~L~~n~l~~~~~~~f~~L 736 (801)
+++|+.|+|++|.|++..+..+.+|
T Consensus 229 l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9999999999999988776555333
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=171.47 Aligned_cols=238 Identities=13% Similarity=0.007 Sum_probs=145.8
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh-hHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY-LKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l-p~~l~~l 505 (801)
.++.++++++.++... ..+++.|.+.+|+|..+++++|.++++|++|+|++|++.. .+ +..|.++
T Consensus 13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-----------~i~~~~f~~L 78 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-----------VIEADVFSNL 78 (350)
T ss_dssp EEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-----------EECTTSBCSC
T ss_pred EEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-----------ccChhHhhcc
Confidence 3455666666554332 2456777777777777777777788888888888777632 12 2346677
Q ss_pred cCCce-EeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCC-ccccCCCcccCCCC-cccc
Q 045877 506 KELRL-LSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISEC-FLLDGIPKKLSLLS-KLQV 582 (801)
Q Consensus 506 ~~L~~-L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n-~l~~~~p~~~~~L~-~L~~ 582 (801)
++|++ +.+.+|.+....|..|..+++|++|++++|.+....+..+....++.+|++.++ .+....+..|..+. .++.
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence 77665 445555554444566777788888888777665555555566667777777654 33333333455543 4666
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeec-ccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTINI-NSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQT 661 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~-n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 661 (801)
|+ +++|. +..++.......+|+.|++.+ |.+.... ...|.++++|+.|+|++|.++......
T Consensus 159 L~---L~~N~-------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~--~~~f~~l~~L~~LdLs~N~l~~lp~~~----- 221 (350)
T 4ay9_X 159 LW---LNKNG-------IQEIHNSAFNGTQLDELNLSDNNNLEELP--NDVFHGASGPVILDISRTRIHSLPSYG----- 221 (350)
T ss_dssp EE---CCSSC-------CCEECTTSSTTEEEEEEECTTCTTCCCCC--TTTTTTEECCSEEECTTSCCCCCCSSS-----
T ss_pred hc---ccccc-------ccCCChhhccccchhHHhhccCCcccCCC--HHHhccCcccchhhcCCCCcCccChhh-----
Confidence 66 66666 444555555566777777764 4454443 456677777888888777776543211
Q ss_pred CccchhchhhhhcccccccccccccCCCccEEEccC-CCCCCCCcccCCCCCCCccEEEeeCC
Q 045877 662 GRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQC-FPDEKLPSWVHPYSFKNLKNLYIRGG 723 (801)
Q Consensus 662 ~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~-n~~~~lp~~l~~~~l~~L~~L~L~~n 723 (801)
..+|+.|.+.+ +.+..+|. +. .+++|+.+++.++
T Consensus 222 -------------------------~~~L~~L~~l~~~~l~~lP~-l~--~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 -------------------------LENLKKLRARSTYNLKKLPT-LE--KLVALMEASLTYP 256 (350)
T ss_dssp -------------------------CTTCCEEECTTCTTCCCCCC-TT--TCCSCCEEECSCH
T ss_pred -------------------------hccchHhhhccCCCcCcCCC-ch--hCcChhhCcCCCC
Confidence 24566666544 34556664 33 6777777777653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.3e-18 Score=196.41 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=61.0
Q ss_pred hccccccccccch-hhcch-hhhhhccccCceeeecCCcccCCCChhhhc----cCCCCCEEEcCCcccCCCCCCccccc
Q 045877 421 KIKKLFNFSLSLE-EIENK-AKDCAMKRGRIETLFNVSEEFPEFKYDWFS----KLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 421 ~l~~L~~L~Ls~N-~l~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~----~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
.+++|++|+|++| .++.. .+..+..+++|+.|.+.+|.+.......+. .+++|+.|+|++|. .. +.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~-------~~ 199 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SE-------VS 199 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SC-------CC
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-Cc-------CC
Confidence 4566666666666 44432 333334566666666666665544333332 45566777776664 00 00
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCC
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRAC 540 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n 540 (801)
...+...+..+++|++|+|++|...+.+|..+..+++|+.|+++.|
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 1223333445667777777766444456666666666666665543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=157.36 Aligned_cols=178 Identities=16% Similarity=0.050 Sum_probs=115.6
Q ss_pred ccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcC
Q 045877 428 FSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKE 507 (801)
Q Consensus 428 L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~ 507 (801)
++.+.+.++.++... ..+++.|.+.+|.+..+++..|.++++|++|+|++|.++... +..|..+++
T Consensus 12 v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l~~ 77 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-----------NGVFNKLTS 77 (208)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----------TTTTTTCTT
T ss_pred EEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-----------hhhcCCCCC
Confidence 445555554443322 246777777777777777777777777777777777774321 334567777
Q ss_pred CceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccccc
Q 045877 508 LRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFV 587 (801)
Q Consensus 508 L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~ 587 (801)
|++|+|++|.+.+..+..++++++|++|+|++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~--- 154 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW--- 154 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE---
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE---
Confidence 77777777755544445567777777777777766655555567777777888777777655555567777777777
Q ss_pred ccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhccc
Q 045877 588 ISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFK 637 (801)
Q Consensus 588 l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~ 637 (801)
+++|. ..+.+++|+.|+++.|.+.+.. +..++.++
T Consensus 155 l~~N~-------------~~~~~~~l~~L~~~~n~~~g~i--p~~~~~l~ 189 (208)
T 2o6s_A 155 LHDNP-------------WDCTCPGIRYLSEWINKHSGVV--RNSAGSVA 189 (208)
T ss_dssp CCSCC-------------BCCCTTTTHHHHHHHHHCTTTB--BCTTSSBC
T ss_pred ecCCC-------------eecCCCCHHHHHHHHHhCCcee--eccCcccc
Confidence 66665 1234566777777777777665 45555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=164.21 Aligned_cols=194 Identities=20% Similarity=0.186 Sum_probs=158.8
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.+..+..+.+..+.+...... ..+.+|+.|.+.+|.+..+. .+..+++|++|+|++|.++. ++.
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~~--~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~------------~~~ 85 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD------------IKP 85 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC------------CGG
T ss_pred HHHHHHHHHhcCCCcccccch--hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCC------------Ccc
Confidence 345556667777777665433 36789999999999998874 48999999999999999953 333
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
+..+++|++|+|++|.+ ..+|. ++.+++|++|+|++|.+.+ + ..+..+++|++|++++|.+.+. ..+..+++|
T Consensus 86 -l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 158 (291)
T 1h6t_A 86 -LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL 158 (291)
T ss_dssp -GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred -cccCCCCCEEECCCCcC-CCChh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC
Confidence 89999999999999854 44554 9999999999999997655 4 4689999999999999998764 578999999
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
++|+ +++|. ....+. +..+++|+.|++++|.+... ..+..+++|+.|++++|.+...
T Consensus 159 ~~L~---L~~N~-------l~~~~~-l~~l~~L~~L~L~~N~i~~l----~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 159 DTLS---LEDNQ-------ISDIVP-LAGLTKLQNLYLSKNHISDL----RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp SEEE---CCSSC-------CCCCGG-GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSEEEEEEEEEECC
T ss_pred CEEE---ccCCc-------cccchh-hcCCCccCEEECCCCcCCCC----hhhccCCCCCEEECcCCcccCC
Confidence 9999 88888 444444 89999999999999998764 3589999999999999988753
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-18 Score=199.31 Aligned_cols=353 Identities=14% Similarity=0.035 Sum_probs=213.0
Q ss_pred hhhccccccccccchhhcchhhhhhc-cccCceeeecCCc-ccCCC-ChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAM-KRGRIETLFNVSE-EFPEF-KYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~L~l~~n-~i~~~-~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
+..+++|+.|+|++|.+++.....+. .+++|+.|.+.++ .+... .+..+.++++|++|+|++|.++... .
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-------~ 173 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-------G 173 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-------G
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-------h
Confidence 35678999999999999988777775 6889999999887 44432 2345568999999999999875432 1
Q ss_pred hhhhHhhcCCcCCceEeecCCC--CC-ccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc------
Q 045877 496 TDYLKGLKNMKELRLLSLQGMS--GI-QELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL------ 566 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~--~~-~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l------ 566 (801)
..++.....+++|++|+|++|. .. ..++..+.++++|++|+|++|...+.+|..+..+++|++|+++.+..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhh
Confidence 2344444578899999999985 11 12223345689999999999865556788888999999999766531
Q ss_pred ccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeec
Q 045877 567 LDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSW 646 (801)
Q Consensus 567 ~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~ 646 (801)
...++..+.++++|+.|.. +.... ...++..+..+++|++|+|++|.+.... ....+..+++|+.|++++
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~--~~~~~-------~~~l~~~~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSG--FWDAV-------PAYLPAVYSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp HHHHHHHHHTCTTCCEEEC--CBTCC-------GGGGGGGHHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEG
T ss_pred HHHHHHHHhcCCCcccccC--Ccccc-------hhhHHHHHHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcC
Confidence 1123345666667766621 22222 1223333445667777777777644322 122245666777777766
Q ss_pred cCCCCCCCCCCCCCCCccchhchhhhhccc---------c-----cccccccccCCCccEEEccCCCCCCCC-cccCCCC
Q 045877 647 GGGSANKSTKPEPQTGRKDNFFIKTLTKFR---------T-----RVTERSQHVESKLEKLDFQCFPDEKLP-SWVHPYS 711 (801)
Q Consensus 647 n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~---------~-----~l~~~~~~~~~~L~~L~L~~n~~~~lp-~~l~~~~ 711 (801)
| +.......+ ......++.|+... + .+..+... .++|+.|.++++.++... ..+. ..
T Consensus 324 ~-~~~~~l~~l-----~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~-~~~L~~L~~~~~~l~~~~~~~l~-~~ 395 (594)
T 2p1m_B 324 Y-IEDAGLEVL-----ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYFCRQMTNAALITIA-RN 395 (594)
T ss_dssp G-GHHHHHHHH-----HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH-CTTCCEEEEEESCCCHHHHHHHH-HH
T ss_pred c-cCHHHHHHH-----HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh-chhHHHHHHhcCCcCHHHHHHHH-hh
Confidence 5 221000000 00011122221100 0 11111111 368999988777654211 1121 25
Q ss_pred CCCccEEEee--C----CcCCCCCC--------Ccccccceecc----------------cccccccccccccc------
Q 045877 712 FKNLKNLYIR--G----GRLNSLEG--------SEWETVKVLRL----------------KYLNELKIDWKGLQ------ 755 (801)
Q Consensus 712 l~~L~~L~L~--~----n~l~~~~~--------~~f~~L~~l~L----------------~~L~~L~l~~n~l~------ 755 (801)
+++|+.|+|+ + +.++..+. ..+++|+.+++ ++|+.|++++|.++
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~ 475 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHH
Confidence 8999999999 4 45664432 23456666654 44677777777764
Q ss_pred --CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCccc
Q 045877 756 --ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQH 798 (801)
Q Consensus 756 --~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~ 798 (801)
..+++|+.|++.+|+. ...... ..+..+++|+.|++++|+.
T Consensus 476 l~~~~~~L~~L~L~~n~~-~~~~~~-~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPF-GDKALL-ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCSC-CHHHHH-HTGGGGGGSSEEEEESSCC
T ss_pred HHhcCCCcCEEECcCCCC-cHHHHH-HHHHhCCCCCEEeeeCCCC
Confidence 2367788888877753 221110 0224578999999999876
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.4e-16 Score=178.24 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=141.5
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+..|+.|+.|++++|.|..+. .+..+++|+.|.+.+|.+..+++ |.++++|+.|+|++|.++.
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~---------- 101 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD---------- 101 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC----------
T ss_pred ccchhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC----------
Confidence 345678888999999999988764 47788899999999998888766 8889999999999998843
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
+ ..+..+++|++|+|++|.+. .++ .+..|++|+.|+|++|.+.+. ..+..|++|++|+|++|.+.+..| +.
T Consensus 102 --l-~~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~ 172 (605)
T 1m9s_A 102 --L-SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 172 (605)
T ss_dssp --C-TTSTTCTTCCEEECTTSCCC-CCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred --C-hhhccCCCCCEEEecCCCCC-CCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence 2 25788899999999988554 444 588899999999999866554 568889999999999998876655 88
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
.+++|+.|+ +++|. +..+ ..+..|++|+.|+|++|.+....
T Consensus 173 ~l~~L~~L~---Ls~N~-------i~~l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 173 GLTKLQNLY---LSKNH-------ISDL-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TCTTCCEEE---CCSSC-------CCBC-GGGTTCTTCSEEECCSEEEECCC
T ss_pred cCCCCCEEE---CcCCC-------CCCC-hHHccCCCCCEEEccCCcCcCCc
Confidence 888888888 88877 3333 56888889999999988876543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=175.73 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=149.7
Q ss_pred hhhhcc-----ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccc
Q 045877 418 EFEKIK-----KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIE 492 (801)
Q Consensus 418 ~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~ 492 (801)
.+..++ +|+.|+|++|+|+++++..+ ++|+.|.+.+|.|..++ ..+++|++|+|++|.+++
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~------- 114 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLST------- 114 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-------
T ss_pred hhhhccccccCCccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-------
Confidence 455555 89999999999998554442 78999999999999776 457899999999999964
Q ss_pred ccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc
Q 045877 493 IESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK 572 (801)
Q Consensus 493 ~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~ 572 (801)
+|. +.. +|++|+|++|.+.+ +|. .+++|++|+|++|.+.+ +|. .+++|++|+|++|.+.+ +|.
T Consensus 115 -----ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 115 -----LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp -----CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred -----cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence 334 444 99999999986555 777 68999999999997655 776 67899999999999876 777
Q ss_pred ccCCCCcccccccccccCCcchhhhhhcccCcccccCCccC-------CeeEeecccccccccChhhhhcccCCcEEEee
Q 045877 573 KLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHL-------RKLTININSEKFQTENLSTVLAFKRLLQLKVS 645 (801)
Q Consensus 573 ~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L-------~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~ 645 (801)
|. ++|+.|+ +++|. +..++. +.. +| +.|+|++|.+... +..+..+++|+.|+|+
T Consensus 178 -l~--~~L~~L~---Ls~N~-------L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l---p~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 178 -LP--ESLEALD---VSTNL-------LESLPA-VPV--RNHHSEETEIFFRCRENRITHI---PENILSLDPTCTIILE 238 (571)
T ss_dssp -CC--TTCCEEE---CCSSC-------CSSCCC-CC----------CCEEEECCSSCCCCC---CGGGGGSCTTEEEECC
T ss_pred -hh--CCCCEEE---CcCCC-------CCchhh-HHH--hhhcccccceEEecCCCcceec---CHHHhcCCCCCEEEee
Confidence 66 8999999 89998 555565 554 67 9999999999864 5677789999999999
Q ss_pred ccCCCCC
Q 045877 646 WGGGSAN 652 (801)
Q Consensus 646 ~n~l~~~ 652 (801)
+|.+++.
T Consensus 239 ~N~l~~~ 245 (571)
T 3cvr_A 239 DNPLSSR 245 (571)
T ss_dssp SSSCCHH
T ss_pred CCcCCCc
Confidence 9998864
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=176.42 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=162.9
Q ss_pred hhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh
Q 045877 420 EKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL 499 (801)
Q Consensus 420 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp 499 (801)
..+..+..+.+..+.+..+.+ +..+.+|+.|.+.+|.+..++ .|..|++|+.|+|++|.++. ++
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~------------~~ 81 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD------------IK 81 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC------------CG
T ss_pred HHHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC------------Ch
Confidence 345566777888888877655 346789999999999998875 58999999999999999853 23
Q ss_pred HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCc
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~ 579 (801)
. +..+++|++|+|++|.+ ..+| .++.|++|++|+|++|.+.+ + ..+..|++|+.|+|++|.+.+. ..+..+++
T Consensus 82 ~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~ 154 (605)
T 1m9s_A 82 P-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTK 154 (605)
T ss_dssp G-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT
T ss_pred h-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCC
Confidence 3 88999999999999855 4455 69999999999999997665 4 4589999999999999998765 57899999
Q ss_pred ccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCC
Q 045877 580 LQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANK 653 (801)
Q Consensus 580 L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 653 (801)
|+.|+ +++|. +...+. +..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+.+..
T Consensus 155 L~~L~---Ls~N~-------l~~~~~-l~~l~~L~~L~Ls~N~i~~l----~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 155 LDTLS---LEDNQ-------ISDIVP-LAGLTKLQNLYLSKNHISDL----RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSEEE---CCSSC-------CCCCGG-GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCEEE---CcCCc-------CCCchh-hccCCCCCEEECcCCCCCCC----hHHccCCCCCEEEccCCcCcCCc
Confidence 99999 88888 444444 89999999999999998764 46899999999999999887653
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-16 Score=186.42 Aligned_cols=156 Identities=11% Similarity=0.152 Sum_probs=120.7
Q ss_pred CCCcceeecCcchhhHhhhhccceeeCC------CCChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhcc
Q 045877 91 ISSSEQIKKNEEKDASEADQSVQVHPLN------QLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQAT 161 (801)
Q Consensus 91 ~~s~~~vttr~~~~~~~~~~~~~~~~l~------~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (801)
.|++++||||.+.++..+. ...+|+|+ .|+.+| ||+++ ++...
T Consensus 264 pGSRILVTTRd~~Va~~l~-g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~~-------------------------- 315 (1221)
T 1vt4_I 264 LSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRP-------------------------- 315 (1221)
T ss_dssp SSCCEEEECSCSHHHHHHH-HHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCCT--------------------------
T ss_pred CCeEEEEeccChHHHHhcC-CCeEEEecCccccCCcCHHHHHHHHHHH-cCCCH--------------------------
Confidence 6899999999999987554 34567888 899998 77665 22111
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHhCCCCCcccCCCCC----c--hhHHhhhccCCCCCCCCccccccccchhHHHHHH
Q 045877 162 GSKSVQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDD----S--DAQQRRRINQSKDLPNMADKTRFKEHDFFIEFKK 235 (801)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~~l~~----~--~~~~W~~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 235 (801)
.++..+| |+|+|||| +++|+ + +.++|+.. + ...|..+|++
T Consensus 316 ---------------eeL~~eI---CgGLPLAL-kLaGs~Lr~k~~s~eeW~~~-------~--------~~~I~aaLel 361 (1221)
T 1vt4_I 316 ---------------QDLPREV---LTTNPRRL-SIIAESIRDGLATWDNWKHV-------N--------CDKLTTIIES 361 (1221)
T ss_dssp ---------------TTHHHHH---CCCCHHHH-HHHHHHHHHSCSSHHHHHHC-------S--------CHHHHHHHHH
T ss_pred ---------------HHHHHHH---hCCCHHHH-HHHHHHHhCCCCCHHHHhcC-------C--------hhHHHHHHHH
Confidence 1122333 99999996 33332 2 67788764 1 1359999999
Q ss_pred hhhccC-CC-ccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCCccc
Q 045877 236 IFQSLG-ND-QSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVAN 313 (801)
Q Consensus 236 SYd~L~-~~-K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~ 313 (801)
||+.|+ +. |+||+|||+||+++.|.++.++.+|+++| ++.++.+|++|+++|||+... ...
T Consensus 362 SYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------------eedAe~~L~eLvdRSLLq~d~-----~~~ 424 (1221)
T 1vt4_I 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------------KSDVMVVVNKLHKYSLVEKQP-----KES 424 (1221)
T ss_dssp HHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------------SHHHHHHHHHHHTSSSSSBCS-----SSS
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------------HHHHHHHHHHHHhhCCEEEeC-----CCC
Confidence 999999 99 99999999999999999999999999887 134888999999999999842 124
Q ss_pred eEEechhHHHHH
Q 045877 314 SFRMSPLVRSAV 325 (801)
Q Consensus 314 ~~~mHdlv~dl~ 325 (801)
+|+|||++++++
T Consensus 425 rYrMHDLllELr 436 (1221)
T 1vt4_I 425 TISIPSIYLELK 436 (1221)
T ss_dssp EEBCCCHHHHHH
T ss_pred EEEehHHHHHHh
Confidence 799999999966
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=150.48 Aligned_cols=155 Identities=22% Similarity=0.253 Sum_probs=100.2
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp 547 (801)
..+++|+.|+|++|.++ .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|.+.+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~------------~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT------------DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHTCCEEEEESSCCS------------CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGS
T ss_pred hhcCCccEEeccCCCcc------------ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccC
Confidence 45566777777777663 233 4666677777777776 33333 356667777777777776665566
Q ss_pred ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc
Q 045877 548 DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 548 ~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
..++.+++|++|++++|.+.+..|..++.+++|++|+ +++|. .......+..+++|+.|++++|.+...
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~---L~~n~-------~i~~~~~l~~l~~L~~L~l~~n~i~~~- 174 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID---LSYNG-------AITDIMPLKTLPELKSLNIQFDGVHDY- 174 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE---CCSCT-------BCCCCGGGGGCSSCCEEECTTBCCCCC-
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE---ccCCC-------CccccHhhcCCCCCCEEECCCCCCcCh-
Confidence 6677777777777777776666666677777777776 55553 112223577788888888888877653
Q ss_pred cChhhhhcccCCcEEEeeccCCCC
Q 045877 628 ENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 628 ~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
..+..+++|+.|++++|.+.+
T Consensus 175 ---~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 ---RGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---TTGGGCSSCCEEEECBC----
T ss_pred ---HHhccCCCCCEEEeeCcccCC
Confidence 267778888888888887653
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=150.58 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=91.4
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhc
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEIS 527 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~ 527 (801)
+|+.|.+.+|.+..++ .+..+++|++|+|++|.++. +..+..+++|++|+|++|.+.+..|..++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN-------------YNPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC-------------CGGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc-------------chhhhcCCCCCEEEeECCccCcccChhhc
Confidence 3444444444444333 35666667777777765421 23566667777777777655555566666
Q ss_pred CCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccc
Q 045877 528 YLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDL 607 (801)
Q Consensus 528 ~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l 607 (801)
.+++|++|+|++|.+.+..|..++.+++|++|++++|...+.+| .+..+++|++|+ +++|. ....+ .+
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~---l~~n~-------i~~~~-~l 177 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN---IQFDG-------VHDYR-GI 177 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE---CTTBC-------CCCCT-TG
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE---CCCCC-------CcChH-Hh
Confidence 77777777777766665566666777777777777776334444 466666777776 66665 22222 66
Q ss_pred cCCccCCeeEeecccccc
Q 045877 608 EKLEHLRKLTININSEKF 625 (801)
Q Consensus 608 ~~L~~L~~L~L~~n~~~~ 625 (801)
..+++|+.|++++|++..
T Consensus 178 ~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEEECBC----
T ss_pred ccCCCCCEEEeeCcccCC
Confidence 777788888888887653
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=149.82 Aligned_cols=164 Identities=12% Similarity=0.012 Sum_probs=135.7
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
.++|++|++++|+|+++.+..|..+++|+.|.+.+|.+..+++..|.++++|++|+|++|.++... +..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-----------NGV 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-----------HhH
Confidence 457999999999999999999999999999999999999999999999999999999999986321 345
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
|..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|++++|.+.+ .+++|+
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~ 168 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIR 168 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTH
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHH
Confidence 7899999999999997665555668999999999999998776666668999999999999997654 455778
Q ss_pred ccccccccCCcchhhhhhcccCcccccCCcc
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSLKDLEKLEH 612 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~ 612 (801)
.|+ +..|. ..+.+|..++.++.
T Consensus 169 ~L~---~~~n~------~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 169 YLS---EWINK------HSGVVRNSAGSVAP 190 (208)
T ss_dssp HHH---HHHHH------CTTTBBCTTSSBCT
T ss_pred HHH---HHHHh------CCceeeccCccccC
Confidence 877 55444 12356677776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-16 Score=183.25 Aligned_cols=207 Identities=16% Similarity=0.094 Sum_probs=158.8
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcc-------------cCCCChhhhccCCCCCEEE-cCCccc
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEE-------------FPEFKYDWFSKLEKIKVLY-LGRWQS 483 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~-------------i~~~~~~~f~~l~~L~~L~-Ls~n~l 483 (801)
++...++|+.|+|++|+|+ .+|..+..+++|+.|.+.+|. +.+..+..+.++++|+.|+ ++.|.+
T Consensus 344 d~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 344 DSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CCSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 3467889999999999997 557888889999998886654 4556678889999999998 677655
Q ss_pred CCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccC
Q 045877 484 TVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563 (801)
Q Consensus 484 ~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~ 563 (801)
... +.+.+....+. .+. ...|++|+|++|.+ ..+|. ++.|++|++|+|++|.+. .+|..|+.|++|++|+|++
T Consensus 423 ~~L--~~l~l~~n~i~-~l~-~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 423 DDL--RSKFLLENSVL-KME-YADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHH--HHHHHHHHHHH-HHH-HTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred chh--hhhhhhccccc-ccC-ccCceEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 210 00000000111 111 12599999999855 45787 999999999999999665 8899999999999999999
Q ss_pred CccccCCCcccCCCCcccccccccccCCcchhhhhhcccC--cccccCCccCCeeEeecccccccccC-hhhhhcccCCc
Q 045877 564 CFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCS--LKDLEKLEHLRKLTININSEKFQTEN-LSTVLAFKRLL 640 (801)
Q Consensus 564 n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~--~~~l~~L~~L~~L~L~~n~~~~~~~~-~~~l~~l~~L~ 640 (801)
|.+++ +| .++.+++|+.|+ +++|. +... |..++.+++|+.|+|++|.+.+..+. ...+..+++|+
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~---Ls~N~-------l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELL---LCNNR-------LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEE---CCSSC-------CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCC-Cc-ccCCCCCCcEEE---CCCCC-------CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 99886 77 899999999999 88888 4555 78999999999999999999877533 23455688999
Q ss_pred EEEe
Q 045877 641 QLKV 644 (801)
Q Consensus 641 ~L~L 644 (801)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 9864
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-15 Score=150.64 Aligned_cols=144 Identities=16% Similarity=0.083 Sum_probs=76.4
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCC-hhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFK-YDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
.+++++|.++.++... ...++.|.+.+|.+..+. ...|.++++|++|+|++|.++.. .+..|..+
T Consensus 15 ~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-----------~~~~~~~l 80 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-----------EEGAFEGA 80 (220)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-----------CTTTTTTC
T ss_pred EeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-----------CHHHhCCC
Confidence 4666666665543222 123445555556555553 24455566666666666655321 12345555
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..|..+++|+.|+
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 5666666665554444444555556666666665555555555555555566666655555544444454444444444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=150.31 Aligned_cols=144 Identities=17% Similarity=0.076 Sum_probs=79.5
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK 506 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~ 506 (801)
.+++++|.++.++.... ..++.|.+.+|.|..+++..|.++++|++|+|++|.++. ..|..|.+++
T Consensus 15 ~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-----------~~~~~~~~l~ 80 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-----------LAPDAFQGLR 80 (220)
T ss_dssp EEECTTSCCSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-----------ECTTTTTTCS
T ss_pred EEEcCCCCcCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-----------cCHHHhhCCc
Confidence 45555555555433221 355666666666666655566666666666666666532 1245556666
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+|++|+|++|.+....+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..+..|..+++|+.|+
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 666666666543332223345566666666666655555555566666666666666665544444455555555554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=148.19 Aligned_cols=119 Identities=20% Similarity=0.085 Sum_probs=56.1
Q ss_pred eeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCC
Q 045877 451 TLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLT 530 (801)
Q Consensus 451 ~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~ 530 (801)
.+...++.+..++.... ++|++|+|++|.+++. .+..|..+++|++|+|++|.+....+..|..++
T Consensus 23 ~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~~-----------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP---TNAQILYLHDNQITKL-----------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp EEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EeEccCCCcCccCCCCC---CCCCEEEcCCCccCcc-----------CHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 34444555554443222 4555555555555321 134455555555555555543222223345555
Q ss_pred CCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccc
Q 045877 531 SLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 531 ~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~ 584 (801)
+|++|+|++|.+.+..+..|..+++|++|+|++|.+. .+|..+..+++|++|+
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 5555555555444433334455555555555555543 3444444444444444
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-15 Score=161.04 Aligned_cols=178 Identities=17% Similarity=0.092 Sum_probs=88.0
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhc-cCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFS-KLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
.+++++|+|+.++.... ..++.|++.+|.|..+.+..|. ++++|+.|+|++|+++.. .+..|..+
T Consensus 22 ~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-----------~~~~~~~l 87 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-----------SSEAFVPV 87 (361)
T ss_dssp EEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-----------CTTTTTTC
T ss_pred EEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-----------ChhhccCC
Confidence 45666666555432221 2344555555555555555554 555555555555555321 12345555
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
++|++|+|++|.+....+..|..+++|++|+|++|.+....|..|..+++|++|+|++|.+....+..|.
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~---------- 157 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK---------- 157 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----------
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc----------
Confidence 5555555555543333333455555555555555544444445555555555555555554321111110
Q ss_pred ccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccC--CcEEEeeccCCC
Q 045877 586 FVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKR--LLQLKVSWGGGS 650 (801)
Q Consensus 586 ~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~--L~~L~L~~n~l~ 650 (801)
.+..+++|+.|+|++|.+.... ...+..++. |+.|+|++|.+.
T Consensus 158 --------------------~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 --------------------DGNKLPKLMLLDLSSNKLKKLP--LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ------------------------CTTCCEEECCSSCCCCCC--HHHHHHSCHHHHTTEECCSSCEE
T ss_pred --------------------CcccCCcCCEEECCCCCCCccC--HHHhhhccHhhcceEEecCCCcc
Confidence 0134566666666666665544 445555554 356666666554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.9e-15 Score=152.50 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=91.1
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.+..++.++++.|.++.+. .+..+++|+.|.+.+|.+..++ .|..+++|+.|+|++|.++. ++.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~------------~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISD------------LSP 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC------------CGG
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCC------------Chh
Confidence 5666777777777776654 3455666666666666666553 45666666666666666632 222
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
+..+++|++|+|++|.+ ..+|. +.. .+|++|+|++|.+.+ ++ .+..+++|++|++++|++.+. + .+..+++|
T Consensus 81 -l~~l~~L~~L~L~~N~l-~~l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L 152 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRL-KNLNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL 152 (263)
T ss_dssp -GTTCSSCCEEECCSSCC-SCCTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC
T ss_pred -hccCCCCCEEECCCCcc-CCcCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCC
Confidence 56666666666666533 33443 222 566666666664433 22 355666666666666655432 2 34444455
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
+.|+ +++|. .... ..+..+++|+.|++++|.+.
T Consensus 153 ~~L~---L~~N~-------i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 153 EVLD---LHGNE-------ITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CEEE---CTTSC-------CCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred CEEE---CCCCc-------Ccch-HHhccCCCCCEEeCCCCccc
Confidence 5544 44444 1111 33444444455555444443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.5e-15 Score=147.59 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=121.9
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
++|+.|+|++|+|+++.+..|..+++|+.|.+.+|.+..+.+..|.++++|++|+|++|.++... +..|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-----------~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-----------KSLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-----------TTTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-----------HhHc
Confidence 57899999999999999999999999999999999999999999999999999999999996321 3457
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88999999999999887777889999999999999999888777778999999999999999865
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=146.46 Aligned_cols=149 Identities=18% Similarity=0.148 Sum_probs=102.1
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
+.++.+++++..++... .++|+.|.+.+|.+..+.+..|.++++|++|+|++|.++... +..|..+
T Consensus 22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-----------~~~~~~l 87 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-----------VGVFDSL 87 (229)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------TTTTTTC
T ss_pred CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-----------hhhcccC
Confidence 34666666666555433 266777888888888777777888888888888888774321 2446777
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKG 585 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~ 585 (801)
++|++|+|++|.+.+..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|++.+..+..|..+++|+.|+
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~- 165 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY- 165 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE-
Confidence 88888888887655444455677888888888887544 6777778888888888888877654444555666666655
Q ss_pred ccccCCc
Q 045877 586 FVISDHA 592 (801)
Q Consensus 586 ~~l~~n~ 592 (801)
+++|.
T Consensus 166 --l~~N~ 170 (229)
T 3e6j_A 166 --LFGNP 170 (229)
T ss_dssp --CTTSC
T ss_pred --eeCCC
Confidence 55554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=146.78 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=122.3
Q ss_pred ccccccccchhhcchhh-hhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 424 KLFNFSLSLEEIENKAK-DCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
.++.|+|++|+|+++.+ ..|..+++|+.|.+.+|.+..+++..|.++++|++|+|++|.++.. .+..|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~ 101 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-----------QHKMF 101 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----------CGGGG
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-----------CHhHh
Confidence 46899999999999865 5688999999999999999999999999999999999999999643 25668
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccC
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDG 569 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~ 569 (801)
..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..|..+++|++|++++|.+...
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999999999999988877789999999999999999988888899999999999999999987654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-15 Score=160.49 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=130.4
Q ss_pred cccccccccchhhcchhhhhhc-cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAM-KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
..++.|+|++|+|+++.+..|. .+.+|+.|.+.+|.|..+.+..|.++++|+.|+|++|+++.. .+..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-----------DEFL 107 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------CTTT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-----------CHHH
Confidence 3588999999999999999998 999999999999999999999999999999999999998532 2456
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc-c---cCCCCCCEEcccCCccccCCCcccCCC
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE-I---GKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~-~---~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
|..+.+|++|+|++|.+....|..|.++++|++|+|++|.+.. +|.. | ..+++|++|+|++|.+....+..+..+
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 8899999999999998777778899999999999999996655 5554 4 679999999999999876554566666
Q ss_pred Ccc--cccccccccCCc
Q 045877 578 SKL--QVLKGFVISDHA 592 (801)
Q Consensus 578 ~~L--~~L~~~~l~~n~ 592 (801)
+.+ +.|+ +++|.
T Consensus 187 ~~~~l~~l~---l~~N~ 200 (361)
T 2xot_A 187 PAWVKNGLY---LHNNP 200 (361)
T ss_dssp CHHHHTTEE---CCSSC
T ss_pred cHhhcceEE---ecCCC
Confidence 653 6666 77776
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-15 Score=152.73 Aligned_cols=171 Identities=16% Similarity=0.092 Sum_probs=140.7
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
.+.++..+.+..+.+..+. .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+ ..++.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~------------~l~-~l~~l~~L~~L~L~~N~i-~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ------------SLA-GMQFFTNLKELHLSHNQI-SDLSP 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC------------CCT-TGGGCTTCCEEECCSSCC-CCCGG
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc------------cch-HHhhCCCCCEEECCCCcc-CCChh
Confidence 3455667778888888765 5889999999999999984 334 688999999999999855 45555
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc
Q 045877 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL 604 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~ 604 (801)
++++++|++|+|++|.+.+ +|.. .. ++|++|++++|.+.+ ++ .+..+++|+.|+ +++|. ....
T Consensus 81 -l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~---Ls~N~-------i~~~- 143 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS---IRNNK-------LKSI- 143 (263)
T ss_dssp -GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE---CTTSC-------CCBC-
T ss_pred -hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEE---CCCCc-------CCCC-
Confidence 9999999999999996654 5543 33 899999999999875 34 699999999999 88888 4434
Q ss_pred ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 605 KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 605 ~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+.
T Consensus 144 ~~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 VMLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred hHHccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence 4789999999999999998765 5688899999999999988754
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-15 Score=175.46 Aligned_cols=112 Identities=26% Similarity=0.260 Sum_probs=60.5
Q ss_pred ChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCC
Q 045877 463 KYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 463 ~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
++..|..++.|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..|++|++|++|+|++|.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~------------~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF------------NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ------CCCCCCEEECTTSCCS------------CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred ChhhhccCCCCcEEECCCCCCC------------CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 3455666666666666666652 33444555666666666665433 5566666666666666666644
Q ss_pred CCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 543 LDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 543 ~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
. .+|..|++|++|++|+|++|.+. .+|..|+.|++|++|+ +++|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~---L~~N~ 327 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG---VEGNP 327 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE---CTTSC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe---CCCCc
Confidence 3 55666666666666666666543 4455555555555555 44444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-15 Score=169.81 Aligned_cols=180 Identities=16% Similarity=0.111 Sum_probs=141.3
Q ss_pred chhhhhhhhccccccccccchh-------------hcchhhhhhccccCceeee-cCCcccCCCChhh-----hcc--CC
Q 045877 413 EQKAVEFEKIKKLFNFSLSLEE-------------IENKAKDCAMKRGRIETLF-NVSEEFPEFKYDW-----FSK--LE 471 (801)
Q Consensus 413 ~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~~~~L~~L~-l~~n~i~~~~~~~-----f~~--l~ 471 (801)
...+.+++.+++|+.|++++|. +.+..|..+..+++|+.|. +..|.+..+.... +.. ..
T Consensus 362 ~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~ 441 (567)
T 1dce_A 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCcc
Confidence 3467788999999999998876 5677788888888888887 5555443322111 111 13
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~ 551 (801)
.|++|+|++|.++ .+|. |+.+++|++|+|++|.+. .+|..|++|++|++|+|++|.+.+ +| .++
T Consensus 442 ~L~~L~Ls~n~l~------------~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLT------------VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA 505 (567)
T ss_dssp TCSEEECTTSCCS------------SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT
T ss_pred CceEEEecCCCCC------------CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC
Confidence 5999999999985 3455 889999999999998554 899999999999999999997665 77 899
Q ss_pred CCCCCCEEcccCCccccCC-CcccCCCCcccccccccccCCcchhhhhhcccCccc----ccCCccCCeeEe
Q 045877 552 KLKSLTHLDISECFLLDGI-PKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD----LEKLEHLRKLTI 618 (801)
Q Consensus 552 ~L~~L~~L~Ls~n~l~~~~-p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~----l~~L~~L~~L~L 618 (801)
.|++|++|+|++|.+.+.. |..|+.+++|+.|+ +++|. ....+.. +..+++|+.|++
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~---L~~N~-------l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN---LQGNS-------LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE---CTTSG-------GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE---ecCCc-------CCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999998876 99999999999999 88888 4444443 334788988864
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=169.66 Aligned_cols=185 Identities=9% Similarity=0.104 Sum_probs=130.1
Q ss_pred CCCCcceeecCcchhhHhhhh-ccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhccCCcc
Q 045877 90 KISSSEQIKKNEEKDASEADQ-SVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQATGSKS 165 (801)
Q Consensus 90 ~~~s~~~vttr~~~~~~~~~~-~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (801)
..+++++||||...++..+.. ...+..+++|+.+| +|...++....
T Consensus 255 ~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~------------------------------ 304 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA------------------------------ 304 (591)
T ss_dssp CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGG------------------------------
T ss_pred cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcc------------------------------
Confidence 357899999999998775431 22333346899988 77776643111
Q ss_pred chhhhhhhHHHHHHHHHHHHHhCCCCCcccCCCCC---chhHHhhhccCCC---CCCCCccccccccchhHHHHHHhhhc
Q 045877 166 VQEVETLQDEIRRISQKFLNLKSKIPPVNSSSSDD---SDAQQRRRINQSK---DLPNMADKTRFKEHDFFIEFKKIFQS 239 (801)
Q Consensus 166 ~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~~l~~---~~~~~W~~~l~~~---~~~~~~~~~~~~~~~i~~~L~~SYd~ 239 (801)
...+.+.+|+++|+|+|+|+ ..++. .....|..+++.. ...............|..++..||+.
T Consensus 305 ---------~~~~~~~~i~~~~~G~PLal-~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~ 374 (591)
T 1z6t_A 305 ---------DLPEQAHSIIKECKGSPLVV-SLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374 (591)
T ss_dssp ---------GSCTHHHHHHHHHTTCHHHH-HHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHT
T ss_pred ---------cccHHHHHHHHHhCCCcHHH-HHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHh
Confidence 12346789999999999996 33332 2234576554431 11111100011123699999999999
Q ss_pred cC-CCccccceecccCCCceechhhHHHHHHHcCCCcccccCCCChHHHHHHHHHHHHhcCcccccccccCCccceEEec
Q 045877 240 LG-NDQSCLLCFAVFPENAVIKKRLLVNWWIGEGFLKERIQGENSAEKAADKLLREFEEKGFILPVDKKHRGVANSFRMS 318 (801)
Q Consensus 240 L~-~~K~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mH 318 (801)
|+ +.|.||++||+||+++.|+.+.++..|.++ .+.++.++.+|+++|||+.... +...+|+||
T Consensus 375 L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H 438 (591)
T 1z6t_A 375 LREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLH 438 (591)
T ss_dssp SCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECC
T ss_pred CCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEc
Confidence 99 999999999999999999999999999543 2457889999999999985532 233489999
Q ss_pred hhHHHHHHHHhh
Q 045877 319 PLVRSAVITLAK 330 (801)
Q Consensus 319 dlv~dl~~~~a~ 330 (801)
+++|++++..+.
T Consensus 439 ~lv~~~~~~~~~ 450 (591)
T 1z6t_A 439 DLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHTG
T ss_pred HHHHHHHHhhhh
Confidence 999999998744
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-15 Score=174.32 Aligned_cols=189 Identities=19% Similarity=0.129 Sum_probs=114.3
Q ss_pred cccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCC
Q 045877 429 SLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKEL 508 (801)
Q Consensus 429 ~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L 508 (801)
+++.|++. ..+..|..+..|+.|.+.+|.+..++...| ++++|++|+|++|.|+ .+|..|+++++|
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L 272 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLT------------ELPAEIKNLSNL 272 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCS------------CCCGGGGGGTTC
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCc------------ccChhhhCCCCC
Confidence 33444444 557888999999999999999998776665 8999999999999984 457889999999
Q ss_pred ceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc-ccccccc
Q 045877 509 RLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL-QVLKGFV 587 (801)
Q Consensus 509 ~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L-~~L~~~~ 587 (801)
++|+|++|.+. .+|..|++|++|++|+|++|.+ +.+|..|++|++|++|+|++|.+.+.+|..+..+... ..|+
T Consensus 273 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~--- 347 (727)
T 4b8c_D 273 RVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY--- 347 (727)
T ss_dssp CEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH---
T ss_pred CEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh---
Confidence 99999998655 8899999999999999999954 6889999999999999999999998888877654322 2244
Q ss_pred ccCCcchhhhhhcccCcccccCCccCCeeEeeccc--------ccccccChhhhhcccCCcEEEeeccCCC
Q 045877 588 ISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS--------EKFQTENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 588 l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~--------~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
+.+|. + .... ...|+.|+++.|. +.... ...+..+..+....+++|.+.
T Consensus 348 l~~N~-----l-~~~~------p~~l~~l~l~~n~~~~~~~~~l~~~~--~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNR-----P-EIPL------PHERRFIEINTDGEPQREYDSLQQST--EHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCC-----C-CCCC------CCC-------------------------------------------CCC
T ss_pred hccCc-----c-cCcC------ccccceeEeecccccccccCCccccc--cchhhcccccceeeeeccccc
Confidence 56665 1 1122 2346666777662 11111 233455666677777888765
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=135.53 Aligned_cols=130 Identities=18% Similarity=0.107 Sum_probs=86.5
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChh-hhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYD-WFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN 504 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~ 504 (801)
+.+++++|+|+.++...+ ..++.|.+.+|.+..+++. .|.++++|++|+|++|.+++. .|..|..
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-----------EPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-----------CTTTTTT
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-----------CHhHcCC
Confidence 456777777755543222 2667777777777766653 467777777777777776432 2556677
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccC
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDG 569 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~ 569 (801)
+++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+.
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777777777766555556677777777777777766666677777777777777777766543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=130.54 Aligned_cols=140 Identities=24% Similarity=0.178 Sum_probs=87.2
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP 547 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp 547 (801)
...++|+.|+|++|.++.. .+|..+..+++|++|+|++|.+.+ + ..++.+++|++|+|++|.+.+.+|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~----------~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDG----------KIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp SCTTSCSEEECCSCBCBTT----------BCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred CCcccCCEEECCCCCCChh----------hHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHH
Confidence 3456788888888877421 344556777788888888875443 3 667778888888888877666677
Q ss_pred ccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccc
Q 045877 548 DEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQT 627 (801)
Q Consensus 548 ~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~ 627 (801)
..+..+++|++|++++|.+.+. | .+..+..+++|+.|++++|.+....
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~-~-------------------------------~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDI-S-------------------------------TLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSS-G-------------------------------GGGGGSSCSCCCEEECCSSGGGTST
T ss_pred HHHhhCCCCCEEeccCCccCcc-h-------------------------------hHHHHhcCCCCCEEEeeCCcCcchH
Confidence 7777778888888887775432 1 0123444555555566655555432
Q ss_pred cC-hhhhhcccCCcEEEeeccCCCC
Q 045877 628 EN-LSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 628 ~~-~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
.. ...+..+++|+.|++++|.+..
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 137 DYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp THHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHHHHhCccCcEecCCCCChhh
Confidence 00 0345566666666666665543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=130.51 Aligned_cols=129 Identities=19% Similarity=0.117 Sum_probs=66.4
Q ss_pred cccccccccchhhc-chhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 423 KKLFNFSLSLEEIE-NKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
++|+.|++++|+|+ +.+|..+..+++|+.|.+.+|.+..+ ..|..+++|++|+|++|.++. .+|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG-----------GLDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS-----------CCCHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch-----------HHHHH
Confidence 55666666666665 44444455555555555555555544 445555555555555555532 12344
Q ss_pred hcCCcCCceEeecCCCCCccCc--hhhcCCCCCCEEeccCCCCCCCCc---ccccCCCCCCEEcccCCc
Q 045877 502 LKNMKELRLLSLQGMSGIQELP--SEISYLTSLEILDLRACYNLDKLP---DEIGKLKSLTHLDISECF 565 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp--~~i~~L~~L~~L~Ls~n~~~~~lp---~~~~~L~~L~~L~Ls~n~ 565 (801)
+..+++|++|+|++|.+ ..+| ..++.+++|++|+|++|.+.+..+ ..+..+++|++|++++|.
T Consensus 91 ~~~l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHCTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HhhCCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 44455555555555532 2222 445555555555555554333322 245555555555555554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=128.02 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=55.7
Q ss_pred hhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCC
Q 045877 466 WFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDK 545 (801)
Q Consensus 466 ~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~ 545 (801)
.|..+++|++|+|++|.++. + ..+..+++|++|+|++|.+.+.+|..++.+++|++|++++|.+.+.
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~------------~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTS------------I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCC------------C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred HHhhcCCCcEEECcCCCCCC------------c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence 44555555555555555531 1 3455555566666655544444555555555666666665543331
Q ss_pred -CcccccCCCCCCEEcccCCccccCCC---cccCCCCcccccc
Q 045877 546 -LPDEIGKLKSLTHLDISECFLLDGIP---KKLSLLSKLQVLK 584 (801)
Q Consensus 546 -lp~~~~~L~~L~~L~Ls~n~l~~~~p---~~~~~L~~L~~L~ 584 (801)
.+..++.+++|++|++++|.+.+..+ ..+..+++|+.|+
T Consensus 104 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 22455555666666666665544333 2455555555555
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-13 Score=132.17 Aligned_cols=126 Identities=14% Similarity=0.056 Sum_probs=89.0
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh-HhhcCCcCCceEeecCCCCCccCchhhcC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL-KGLKNMKELRLLSLQGMSGIQELPSEISY 528 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp-~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~ 528 (801)
+++.+.++.+..++...+. +|++|+|++|.++... + ..|..+++|++|+|++|.+.+..|..|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~---~l~~L~l~~n~i~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRIS-----------SDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT---TCSEEECCSCCCCSBC-----------CSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCcCccCCCC---CCCEEECCCCcCCccC-----------CccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 5667777777666553332 6778888888774321 1 13677778888888887666666777777
Q ss_pred CCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 529 LTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 529 L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
+++|++|+|++|.+.+..+..|..+++|++|+|++|++.+..|..|..+++|++|+ +++|.
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN---LASNP 137 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE---CTTCC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE---eCCCC
Confidence 88888888888777766666677778888888888877777777777777777776 66665
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-13 Score=126.51 Aligned_cols=132 Identities=21% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccc
Q 045877 470 LEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549 (801)
Q Consensus 470 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~ 549 (801)
.++|+.|++++|.++.. .+|..+..+++|++|+|++|.+.+. ..++.+++|++|+|++|.+.+.+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~----------~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG----------KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTT----------BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CccCeEEEccCCcCChh----------HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH
Confidence 34566666666655311 2334455556666666666533322 44555666666666665555445555
Q ss_pred ccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC
Q 045877 550 IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN 629 (801)
Q Consensus 550 ~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~ 629 (801)
++.+++|++|++++|.+.+. + .+..++.+++|++|++++|.+......
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~-~-------------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~ 131 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDL-S-------------------------------TIEPLKKLENLKSLDLFNCEVTNLNDY 131 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSH-H-------------------------------HHGGGGGCTTCCEEECTTCGGGGSTTH
T ss_pred hhhCCCCCEEECCCCcCCCh-H-------------------------------HHHHHhhCCCCCEEeCcCCcccchHHH
Confidence 55556666666665554321 1 124455666677777777766554310
Q ss_pred -hhhhhcccCCcEEEee
Q 045877 630 -LSTVLAFKRLLQLKVS 645 (801)
Q Consensus 630 -~~~l~~l~~L~~L~L~ 645 (801)
...+..+++|+.|+++
T Consensus 132 ~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 132 RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHHCTTCCEETTB
T ss_pred HHHHHHHCCCcccccCC
Confidence 1356677777777664
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=125.65 Aligned_cols=131 Identities=15% Similarity=0.031 Sum_probs=87.2
Q ss_pred ccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 426 FNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 426 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
+.+++++|++..++...+ ++++.|.+.+|.+..+++..|.++++|++|+|++|.++... +..+..+
T Consensus 10 ~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-----------DGVFDKL 75 (177)
T ss_dssp TEEECCSSCCSSCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-----------TTTTTTC
T ss_pred CEEEecCCCCccCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-----------hhHccCC
Confidence 456677777766543332 46777777777777777777777777777777777774321 3345677
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCC
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGI 570 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~ 570 (801)
++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 77777777777555444455677777777777777655444444566777777777777765433
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=127.28 Aligned_cols=106 Identities=26% Similarity=0.132 Sum_probs=58.8
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCccccc
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIG 551 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~ 551 (801)
+|++|+|++|.++ .+|..|..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|.
T Consensus 32 ~l~~L~L~~n~i~------------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 32 DVTELYLDGNQFT------------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp TCCEEECCSSCCC------------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCCEEECCCCcCc------------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence 4556666666552 2344555556666666666544444444555666666666666555554455555
Q ss_pred CCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 552 KLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 552 ~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
.+++|++|+|++|.+....+..|..+++|+.|+ +++|.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~ 137 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA---IGANP 137 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE---CCSSC
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEE---eCCCC
Confidence 666666666666655544334455555666555 55554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=125.89 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=53.8
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGF 586 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~ 586 (801)
+|++|+|++|. +..+|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|++|+
T Consensus 32 ~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~-- 108 (193)
T 2wfh_A 32 DVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS-- 108 (193)
T ss_dssp TCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE--
T ss_pred CCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE--
Confidence 45555555542 234445555555555555555544444444455555555555555555544444455555555555
Q ss_pred cccCCcchhhhhhcccCcc-cccCCccCCeeEeeccccc
Q 045877 587 VISDHAEDDRRWKRWCSLK-DLEKLEHLRKLTININSEK 624 (801)
Q Consensus 587 ~l~~n~~~~~~~~~~~~~~-~l~~L~~L~~L~L~~n~~~ 624 (801)
+++|. +..++. .|..+++|+.|+|++|.+.
T Consensus 109 -L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 -LHGND-------ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -CCSSC-------CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -CCCCC-------CCeeChhhhhcCccccEEEeCCCCee
Confidence 45444 222332 3445555555555555543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-14 Score=142.56 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=96.6
Q ss_pred hhhhhhhccccccccccchhhcchhhh------hhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCC
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKD------CAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDI 488 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~ 488 (801)
....+.....++.++++.+.+.+..+. .+..+++|++|.+.+|.+..++ .|.++++|+.|+|++|.++
T Consensus 10 ~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~---- 83 (198)
T 1ds9_A 10 AIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK---- 83 (198)
T ss_dssp HHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC----
T ss_pred HHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc----
Confidence 345577888999999999999887665 6777777777777777777754 6777777777777777763
Q ss_pred CcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCc-ccccCCCCCCEEcccCCccc
Q 045877 489 PHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLP-DEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 489 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp-~~~~~L~~L~~L~Ls~n~l~ 567 (801)
.+|..+..+++|++|+|++|.+. .+| .++.+++|++|+|++|.+....+ ..+..+++|++|++++|.+.
T Consensus 84 --------~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 84 --------KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp --------SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred --------cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 33445555677777777776443 355 46677777777777775443211 35667777777777777765
Q ss_pred cCCC
Q 045877 568 DGIP 571 (801)
Q Consensus 568 ~~~p 571 (801)
+.+|
T Consensus 154 ~~~~ 157 (198)
T 1ds9_A 154 NDYK 157 (198)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=140.54 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=41.7
Q ss_pred ccccccccccchhhc--------------------chhhhhhcc--------ccCceeeecCCcccCCCChhhhccCCCC
Q 045877 422 IKKLFNFSLSLEEIE--------------------NKAKDCAMK--------RGRIETLFNVSEEFPEFKYDWFSKLEKI 473 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~--------------------~~~~~~~~~--------~~~L~~L~l~~n~i~~~~~~~f~~l~~L 473 (801)
+++|+.|||++|+|. .+...+|.. +.+|+.+.+.. .+..+...+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 677999999999998 334455555 66666666655 6666666666666666
Q ss_pred CEEEcCCccc
Q 045877 474 KVLYLGRWQS 483 (801)
Q Consensus 474 ~~L~Ls~n~l 483 (801)
+.|+|++|.+
T Consensus 127 ~~l~l~~n~i 136 (329)
T 3sb4_A 127 KICQIRKKTA 136 (329)
T ss_dssp CEEEBCCSSC
T ss_pred ceEEcCCCCc
Confidence 6666666654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-12 Score=136.82 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=32.7
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccC
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISE 563 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~ 563 (801)
|.+|+.|+|.+ .+...-+.+|.+|++|+.|++.+|.+...-+..|..+.++.++.+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666665 33333334566666666666666655544455565555555555544
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-12 Score=124.75 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=27.1
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l 566 (801)
+|++|+|++|.+.+ + ..++.+++|++|+|++|.+.+..+..+..+++|++|++++|.+
T Consensus 43 ~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 55555555543322 2 3445555555555555543332222234555555555555544
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=126.32 Aligned_cols=128 Identities=17% Similarity=0.105 Sum_probs=70.6
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCc-
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELP- 523 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp- 523 (801)
...+|+.|.+.+|.+..+ +......++|++|+|++|.++. + ..+..+++|++|+|++|.+. .+|
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~------------~-~~l~~l~~L~~L~Ls~N~l~-~~~~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK------------L-DGFPLLRRLKTLLVNNNRIC-RIGE 81 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE------------E-CCCCCCSSCCEEECCSSCCC-EECS
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCc------------c-cccccCCCCCEEECCCCccc-ccCc
Confidence 344455555555555544 2222223366666666666631 2 34566666666666666443 333
Q ss_pred hhhcCCCCCCEEeccCCCCCCCCcc--cccCCCCCCEEcccCCccccCCCcc----cCCCCcccccccccccCCc
Q 045877 524 SEISYLTSLEILDLRACYNLDKLPD--EIGKLKSLTHLDISECFLLDGIPKK----LSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 524 ~~i~~L~~L~~L~Ls~n~~~~~lp~--~~~~L~~L~~L~Ls~n~l~~~~p~~----~~~L~~L~~L~~~~l~~n~ 592 (801)
..++.+++|++|+|++|.+ +.+|. .+..+++|++|++++|.+. .+|.. +..+++|+.|+ ++.|.
T Consensus 82 ~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld---~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD---FQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET---TEECC
T ss_pred chhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC---CCcCC
Confidence 3336666666666666643 44454 5666666666666666654 34443 56666666666 44444
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-11 Score=116.33 Aligned_cols=104 Identities=17% Similarity=0.014 Sum_probs=50.5
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYL 529 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L 529 (801)
+.+...++.+..++...+ ++|+.|+|++|.++... +..+..+++|++|+|++|.+.+..+..++.+
T Consensus 10 ~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLP-----------HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp TEEECCSSCCSSCCTTCC---TTCSEEECCSSCCCCCC-----------TTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEecCCCCccCCCCCC---CCCcEEEeCCCcccEeC-----------HHHhcCcccccEEECCCCcceEeChhHccCC
Confidence 344455555554443222 35555555555553211 2234555555555555554333333334555
Q ss_pred CCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 530 TSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 530 ~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
++|++|+|++|.+.+..+..+..+++|++|++++|.+.
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 55555555555444433334455555555555555544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=126.55 Aligned_cols=249 Identities=11% Similarity=0.038 Sum_probs=153.0
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
..++.+.+. |.++.+...+|.+. +|+.+.+..+ +..+...+|.++ +|+.+.|.. .++.. -...|
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I-----------~~~aF 176 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL-----------KEDIF 176 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE-----------CSSTT
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe-----------hHHHh
Confidence 344444443 34666667777664 6777776544 667777777775 577777775 23211 13457
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.+|.+|+.++|.+|. +..++.......+|+.+.|..+ +...-...|.++.+|+.+++..+ +...-...|.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 777888888887753 4445543333577888887754 44444556777778888887765 33333334555 66777
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc-----ccccChhhhhcccCCcEEEeeccCCCCCCCCCC
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK-----FQTENLSTVLAFKRLLQLKVSWGGGSANKSTKP 657 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~-----~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 657 (801)
+. +.++- .......|.++++|+.+++.++.+. ... ..+|.++++|+.+.|.. .+.......+
T Consensus 253 i~---lp~~i-------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~--~~aF~~c~~L~~l~l~~-~i~~I~~~aF 319 (401)
T 4fdw_A 253 VK---LPNGV-------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH--PYCLEGCPKLARFEIPE-SIRILGQGLL 319 (401)
T ss_dssp EE---EETTC-------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC--TTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred EE---eCCCc-------cEEChhHhhCCCCCCEEEeCCccccCCcccEEC--HHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence 76 54433 1122356778888888888777654 222 56788888888888863 3433222111
Q ss_pred CCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 658 EPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 658 ~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
.-+.+|+.+.|..+ +..+....+ .++ +|+.|++.+|.+..+....|.
T Consensus 320 ---------------------------~~c~~L~~l~lp~~-l~~I~~~aF-~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 320 ---------------------------GGNRKVTQLTIPAN-VTQINFSAF-NNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp ---------------------------TTCCSCCEEEECTT-CCEECTTSS-SSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred ---------------------------cCCCCccEEEECcc-ccEEcHHhC-CCC-CCCEEEEcCCCCccccccccc
Confidence 22367888888554 455555544 467 888888888887777766663
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-10 Score=125.17 Aligned_cols=245 Identities=10% Similarity=0.026 Sum_probs=145.4
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
..+..+.+. +.+..+...+|.++ +|+.+.|..+ ++... ..+|.++ +|+.+.|.. ++...-+.+|
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~-----------~~aF~~~-~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIG-----------DMAFFNS-TVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEEC-----------TTTTTTC-CCCEEECCT-TCCEECSSTT
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEEC-----------HHhcCCC-CceEEEeCC-CccEehHHHh
Confidence 445555443 45666777778776 6888887766 32111 2345553 588888876 3444444677
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCccc
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD 606 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~ 606 (801)
.++.+|+.++|.+|.+...-...|. ..+|+.+.+..+ +...-...|.++.+|+.+. +..+. .......
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~---l~~~l-------~~I~~~a 244 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE---IPENV-------STIGQEA 244 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE---CCTTC-------CEECTTT
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe---cCCCc-------cCccccc
Confidence 7888888888887644433333343 577888888754 4444445677777888777 54443 1112234
Q ss_pred ccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccccc
Q 045877 607 LEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHV 686 (801)
Q Consensus 607 l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 686 (801)
|.+ .+|+.+.|. +.+.... ..+|.++++|+.+.+..|.+...... .+....+.-
T Consensus 245 F~~-~~L~~i~lp-~~i~~I~--~~aF~~c~~L~~l~l~~~~~~~~~~~----------------------~I~~~aF~~ 298 (401)
T 4fdw_A 245 FRE-SGITTVKLP-NGVTNIA--SRAFYYCPELAEVTTYGSTFNDDPEA----------------------MIHPYCLEG 298 (401)
T ss_dssp TTT-CCCSEEEEE-TTCCEEC--TTTTTTCTTCCEEEEESSCCCCCTTC----------------------EECTTTTTT
T ss_pred ccc-CCccEEEeC-CCccEEC--hhHhhCCCCCCEEEeCCccccCCccc----------------------EECHHHhhC
Confidence 555 678888774 3344443 56778888888888877665411100 011111122
Q ss_pred CCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccc
Q 045877 687 ESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGL 754 (801)
Q Consensus 687 ~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l 754 (801)
+.+|+.+.|.+ .+..++...+ .+|.+|+.|+|..+ ++.+....| -.+ +|+.+++..|.+
T Consensus 299 c~~L~~l~l~~-~i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF-----~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 299 CPKLARFEIPE-SIRILGQGLL-GGNRKVTQLTIPAN-VTQINFSAF-----NNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTTCCEECCCT-TCCEECTTTT-TTCCSCCEEEECTT-CCEECTTSS-----SSS-CCCEEEECCSSC
T ss_pred CccCCeEEeCC-ceEEEhhhhh-cCCCCccEEEECcc-ccEEcHHhC-----CCC-CCCEEEEcCCCC
Confidence 46777777774 3556665554 57788888888544 666666666 344 666677666654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-13 Score=133.07 Aligned_cols=135 Identities=20% Similarity=0.133 Sum_probs=66.9
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCC
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
|..+..+++|++|+|++|.+. .+| .++.+++|++|+|++|.+. .+|..+..+++|++|++++|.+.+ +| .+..++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 334455555555555554322 244 4455555555555554332 344444444555555555555443 33 344455
Q ss_pred cccccccccccCCcchhhhhhcccCc--ccccCCccCCeeEeecccccccccC--------hhhhhcccCCcEEEeeccC
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSL--KDLEKLEHLRKLTININSEKFQTEN--------LSTVLAFKRLLQLKVSWGG 648 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~--~~l~~L~~L~~L~L~~n~~~~~~~~--------~~~l~~l~~L~~L~L~~n~ 648 (801)
+|++|+ +++|. ....+ ..+..+++|++|++++|.+...... ...+..+++|+.|+ ++.
T Consensus 116 ~L~~L~---l~~N~-------i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 116 NLRVLY---MSNNK-------ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HSSEEE---ESEEE-------CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred CCCEEE---CCCCc-------CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 555555 44444 11111 2456666777777777766544200 12366777777775 444
Q ss_pred CC
Q 045877 649 GS 650 (801)
Q Consensus 649 l~ 650 (801)
++
T Consensus 184 i~ 185 (198)
T 1ds9_A 184 VD 185 (198)
T ss_dssp GT
T ss_pred cC
Confidence 43
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=109.00 Aligned_cols=103 Identities=20% Similarity=0.052 Sum_probs=57.3
Q ss_pred eeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCC
Q 045877 451 TLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLT 530 (801)
Q Consensus 451 ~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~ 530 (801)
.+.+.+|.+..++... .++|++|+|++|.+++. .+..|..+++|++|+|++|.+.+..+..|.+++
T Consensus 13 ~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKL-----------EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp EEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCC-----------CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred EEEeCCCCcCccCccC---CCCCcEEEcCCCcCCcc-----------ChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 3444444444443322 24566666666666432 144556666666666666644433334456666
Q ss_pred CCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 531 SLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 531 ~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
+|++|+|++|.+.+..+..|..+++|++|+|++|.+.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666666666555444445666666666666666654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=110.59 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=72.9
Q ss_pred CCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccC
Q 045877 473 IKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGK 552 (801)
Q Consensus 473 L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~ 552 (801)
.++|++++|.++ .+|..+ ..+|++|+|++|.+.+..|..|.++++|++|+|++|++.+..+..|..
T Consensus 11 ~~~l~~s~n~l~------------~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLA------------SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCS------------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEeCCCCcC------------ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 467888888774 334433 367888888887666666777888888888888888766555556678
Q ss_pred CCCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 553 LKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 553 L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
+++|++|+|++|++.+..+..|..+++|++|+ +++|.
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~ 113 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW---LLNNP 113 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSC
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEE---eCCCC
Confidence 88888888888877655555566666666666 66665
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=110.99 Aligned_cols=104 Identities=17% Similarity=0.020 Sum_probs=54.5
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYL 529 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L 529 (801)
..+...+|.+..++...+ ++|++|+|++|.+++. .|..|.++++|++|+|++|.+.+..+..|.++
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKL-----------EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCcccc-----------CHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 345555555555544322 5566666666665321 13455566666666666654333222334556
Q ss_pred CCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 530 TSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 530 ~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
++|++|+|++|.+.+..+..|..+++|++|+|++|.+.
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666666665444333333555666666666666543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=108.05 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=64.9
Q ss_pred CEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCC
Q 045877 474 KVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKL 553 (801)
Q Consensus 474 ~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L 553 (801)
+.+++++|.++ .+|..+. .+|++|+|++|.+.+..|..|+++++|++|+|++|++.+..+..|.++
T Consensus 15 ~~l~~~~n~l~------------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLA------------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCS------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cEEEeCCCCCC------------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence 56777777663 3333332 567777777766555556667777777777777775554444445677
Q ss_pred CCCCEEcccCCccccCCCcccCCCCcccccccccccCCc
Q 045877 554 KSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHA 592 (801)
Q Consensus 554 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~ 592 (801)
++|++|+|++|++.+..+..|..+++|++|+ +++|.
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~---L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY---LYNNP 116 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEE---CCSSC
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEE---eCCCC
Confidence 7777777777776654444466777777776 66666
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.5e-09 Score=113.11 Aligned_cols=198 Identities=10% Similarity=-0.011 Sum_probs=110.2
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchh
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTD 497 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 497 (801)
.|...++|+.+.|.. .++.+...+|.++.+|+.+.+.. .+..+...+|.++..|+.+.+..+-.. -
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~c~~L~~i~~p~~l~~------------i 131 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD-SVKMIGRCTFSGCYALKSILLPLMLKS------------I 131 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCCCCCCTTCCE------------E
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC-CceEccchhhcccccchhhcccCceee------------e
Confidence 456666677777753 46666677777777777776643 355566667777777776666544211 0
Q ss_pred hhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 498 YLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 498 lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
-...|.++..+........ ...-..+|.++.+|+.+.+..+ ....-...|.++.+|+.+.+..+ +...-...|.++
T Consensus 132 ~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp CTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred cceeeecccccccccCccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 0223444443333333222 2222356777777888777654 33333455667777777777665 333333456677
Q ss_pred CcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeecc
Q 045877 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWG 647 (801)
Q Consensus 578 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n 647 (801)
..|+.+. +..+. ...........+|+.+.+.... .... ...+.++..|+.+.+..+
T Consensus 208 ~~L~~i~---~~~~~--------~~i~~~~~~~~~l~~i~ip~~~-~~i~--~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 208 ILLENME---FPNSL--------YYLGDFALSKTGVKNIIIPDSF-TELG--KSVFYGCTDLESISIQNN 263 (394)
T ss_dssp TTCCBCC---CCTTC--------CEECTTTTTTCCCCEEEECTTC-CEEC--SSTTTTCSSCCEEEECCT
T ss_pred cccceee---cCCCc--------eEeehhhcccCCCceEEECCCc-eecc--cccccccccceeEEcCCC
Confidence 7777665 33332 1112223344566766665432 2222 345667777777777554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=110.25 Aligned_cols=200 Identities=10% Similarity=-0.042 Sum_probs=131.6
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...|..+.+|+.++|.++ ++.+...+|..+..|+.+.+. +.+..+...+|.++..+...........+
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p-~~l~~i~~~aF~~~~~~~~~~~~~~~~i~---------- 154 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP-LMLKSIGVEAFKGCDFKEITIPEGVTVIG---------- 154 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC-TTCCEECTTTTTTCCCSEEECCTTCCEEC----------
T ss_pred hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc-CceeeecceeeecccccccccCccccccc----------
Confidence 345788889999999754 888888899999999887664 44666677788888766655544443211
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
...|.++.+|+.+.+..+ ....-...|.++.+|+.+.+..+ +...-...|.++..|+.+.+..+.. .+...+.
T Consensus 155 ---~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~ 227 (394)
T 4fs7_A 155 ---DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFAL 227 (394)
T ss_dssp ---TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTT
T ss_pred ---hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhhc
Confidence 246888999999999864 44334467888899999988775 4444456677888888888776632 2333344
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeecc
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWG 647 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n 647 (801)
...+|+.+. +.... .......+..+.+|+.+.+..+.... . ...|..+..|+.+.+..+
T Consensus 228 ~~~~l~~i~---ip~~~-------~~i~~~~f~~~~~l~~~~~~~~~~~i-~--~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 228 SKTGVKNII---IPDSF-------TELGKSVFYGCTDLESISIQNNKLRI-G--GSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp TTCCCCEEE---ECTTC-------CEECSSTTTTCSSCCEEEECCTTCEE-C--SCTTTTCTTCCEEEECSS
T ss_pred ccCCCceEE---ECCCc-------eecccccccccccceeEEcCCCccee-e--ccccccccccceeccCce
Confidence 455666655 33322 11122456677788888877654322 2 455667777777766543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-10 Score=124.62 Aligned_cols=178 Identities=12% Similarity=0.025 Sum_probs=89.1
Q ss_pred hccccccccccchhhcchhhhhhccc-----cCceeeecCCcccCCCCh-hhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKR-----GRIETLFNVSEEFPEFKY-DWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~-----~~L~~L~l~~n~i~~~~~-~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
-++.|+.|+|++|.|+......+... ..|+.|.+.+|.+..... ..+..+++|+.|+|++|.++...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~------- 142 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA------- 142 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH-------
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH-------
Confidence 35678888888888877655544333 456666666665543221 12223445666666666553210
Q ss_pred chhhhHhh-cCCcCCceEeecCCCCCc----cCchhhcCCCCCCEEeccCCCCCC----CCcccccCCCCCCEEcccCCc
Q 045877 495 STDYLKGL-KNMKELRLLSLQGMSGIQ----ELPSEISYLTSLEILDLRACYNLD----KLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 495 ~~~lp~~l-~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~Ls~n~~~~----~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
...+...+ ....+|++|+|++|.+.. .++..+..+++|++|+|++|.+.. .+...+...++|++|+|++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 01122222 234556666666654322 133334455556666666554321 112334444555555555554
Q ss_pred cccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcc
Q 045877 566 LLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAF 636 (801)
Q Consensus 566 l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l 636 (801)
++..- ...+...+...++|++|+|++|.+.... ...+..+
T Consensus 223 i~~~g-----------------------------~~~l~~~L~~~~~L~~L~Ls~N~i~~~g--~~~L~~~ 262 (372)
T 3un9_A 223 AGDTA-----------------------------ALALARAAREHPSLELLHLYFNELSSEG--RQVLRDL 262 (372)
T ss_dssp CCHHH-----------------------------HHHHHHHHHHCSSCCEEECTTSSCCHHH--HHHHHHC
T ss_pred CCHHH-----------------------------HHHHHHHHHhCCCCCEEeccCCCCCHHH--HHHHHHH
Confidence 32100 0012234455677888888888776554 3344433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-09 Score=114.59 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=78.8
Q ss_pred eeecCCc-ccCCCChhhhccCCCCCEEEcCC-cccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcC
Q 045877 451 TLFNVSE-EFPEFKYDWFSKLEKIKVLYLGR-WQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISY 528 (801)
Q Consensus 451 ~L~l~~n-~i~~~~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~ 528 (801)
.+...++ .+..++. |..+++|+.|+|++ |.+++. .+..|.++.+|++|+|++|.+.+..|..|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~-----------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHL-----------ELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEE-----------CGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCc-----------ChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence 3455665 7887665 88888999999986 888432 2467888999999999998777777778889
Q ss_pred CCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 529 LTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 529 L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
|++|++|+|++|.+.+..+..+..+. |++|+|.+|.+.
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999999999876654444555555 999999988865
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=110.70 Aligned_cols=104 Identities=10% Similarity=-0.006 Sum_probs=82.1
Q ss_pred cccccch-hhcchhhhhhccccCceeeecCC-cccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcC
Q 045877 427 NFSLSLE-EIENKAKDCAMKRGRIETLFNVS-EEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKN 504 (801)
Q Consensus 427 ~L~Ls~N-~l~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~ 504 (801)
.++++++ +|++++. +..+.+|+.|++.+ |.|..+++..|.++++|+.|+|++|+|++. .+..|.+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-----------~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-----------APDAFHF 78 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-----------CTTGGGS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-----------CHHHhcC
Confidence 4678887 8887554 88888899999986 999999889999999999999999988642 2567889
Q ss_pred CcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCC
Q 045877 505 MKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLD 544 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~ 544 (801)
+++|++|+|++|.+.+..+..+..+. |++|+|.+|.+..
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999999999866544444455555 9999999986654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=8e-10 Score=120.41 Aligned_cols=139 Identities=16% Similarity=0.010 Sum_probs=107.2
Q ss_pred cccccccccchhhcchhhhhh-ccccCceeeecCCcccCCCChhhh-----ccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 423 KKLFNFSLSLEEIENKAKDCA-MKRGRIETLFNVSEEFPEFKYDWF-----SKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
++|+.|+|++|.|+......+ ..+.+|+.|++.+|.+.......+ ...+.|++|+|++|.++... ..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~-------~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG-------VA 173 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH-------HH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH-------HH
Confidence 799999999999977655444 356789999999999876544444 35688999999999985311 13
Q ss_pred hhhHhhcCCcCCceEeecCCCCCc----cCchhhcCCCCCCEEeccCCCCCC----CCcccccCCCCCCEEcccCCcccc
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQ----ELPSEISYLTSLEILDLRACYNLD----KLPDEIGKLKSLTHLDISECFLLD 568 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~Ls~n~~~~----~lp~~~~~L~~L~~L~Ls~n~l~~ 568 (801)
.+...+..+++|++|+|++|.+.. .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|.+..
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 466777889999999999996543 245667888999999999997654 234455667899999999998764
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.3e-07 Score=99.04 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=46.4
Q ss_pred CCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccCcCCCCceeecc
Q 045877 688 SKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKF 767 (801)
Q Consensus 688 ~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~ 767 (801)
..|+.+.+.. .+..++...+ .++.+|+.++|..+ ++.+....| -.+.+|+.+.+..+ +..+..--+.
T Consensus 288 ~~L~~i~l~~-~i~~I~~~aF-~~c~~L~~i~lp~~-v~~I~~~aF-----~~C~~L~~i~ip~s-----v~~I~~~aF~ 354 (394)
T 4gt6_A 288 PALQDIEFSS-RITELPESVF-AGCISLKSIDIPEG-ITQILDDAF-----AGCEQLERIAIPSS-----VTKIPESAFS 354 (394)
T ss_dssp TTCCEEECCT-TCCEECTTTT-TTCTTCCEEECCTT-CCEECTTTT-----TTCTTCCEEEECTT-----CCBCCGGGGT
T ss_pred cccccccCCC-cccccCceee-cCCCCcCEEEeCCc-ccEehHhHh-----hCCCCCCEEEECcc-----cCEEhHhHhh
Confidence 5677777653 3445665554 56777888877654 555555555 23344444443221 1112222345
Q ss_pred CCCCCcccCCCCC-----cccccCCcceEeCCCccc
Q 045877 768 KCHKVTLCPCDGY-----GIWEKSDLINLNNSKQQH 798 (801)
Q Consensus 768 ~c~~L~~lp~~~n-----~i~~~~~L~~LdlS~~~~ 798 (801)
+|.+|+.+-+.++ .+....+|+.+++..+.+
T Consensus 355 ~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred CCCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 5666665555444 445667777777766543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=101.87 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=17.0
Q ss_pred CcCCceEeecCCCCCccCchhhc--CCCCCCEEecc
Q 045877 505 MKELRLLSLQGMSGIQELPSEIS--YLTSLEILDLR 538 (801)
Q Consensus 505 l~~L~~L~Ls~n~~~~~lp~~i~--~L~~L~~L~Ls 538 (801)
+++|+.|+|..|.+....-..++ .+++|++|+|+
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 55666666665543322222232 45666666654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-06 Score=92.96 Aligned_cols=289 Identities=10% Similarity=0.043 Sum_probs=145.2
Q ss_pred hhhhccccccccccchh---hcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 418 EFEKIKKLFNFSLSLEE---IENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
.|....+|+.+.+..|. ++.+...+|..+..|+.+.+. +.+..+...+|.++.+|+.+.+..+...-
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~-~~~~~I~~~aF~~c~~L~~i~lp~~~~~I--------- 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL-DSVTEIDSEAFHHCEELDTVTIPEGVTSV--------- 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG-TTCSEECTTTTTTCTTCCEEECCTTCCEE---------
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC-Cccceehhhhhhhhcccccccccceeeee---------
Confidence 34555555555555443 455555556555555555443 23444555556666666666665432110
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcc
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKK 573 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~ 573 (801)
-...|..+..|+.+.+..+ +..+. .+|. ...|+.+.+..+ ....-...+..+.+|.......+.... +...
T Consensus 152 ---~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~ 223 (394)
T 4gt6_A 152 ---ADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPA-IDNV 223 (394)
T ss_dssp ---CTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCB-SSSC
T ss_pred ---cccceecccccccccccce--eeEecccccc-ccceeEEEECCc-ccccccchhhhccccceeccccccccc-ccce
Confidence 0234555666666666543 22232 2332 345666665543 332333445555555555544332211 1100
Q ss_pred c--------------CCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCC
Q 045877 574 L--------------SLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRL 639 (801)
Q Consensus 574 ~--------------~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L 639 (801)
+ .....+..+. +.... .......|.++.+|+.+.+..+... .. ..+|.++.+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~---ip~~v-------~~i~~~aF~~c~~L~~i~lp~~~~~-I~--~~aF~~c~~L 290 (394)
T 4gt6_A 224 LYEKSANGDYALIRYPSQREDPAFK---IPNGV-------ARIETHAFDSCAYLASVKMPDSVVS-IG--TGAFMNCPAL 290 (394)
T ss_dssp EEEECTTSCEEEEECCTTCCCSEEE---CCTTE-------EEECTTTTTTCSSCCEEECCTTCCE-EC--TTTTTTCTTC
T ss_pred eecccccccccccccccccccceEE---cCCcc-------eEcccceeeecccccEEecccccce-ec--Cccccccccc
Confidence 0 0001111111 11111 0111246788899999988765432 22 5678899999
Q ss_pred cEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEE
Q 045877 640 LQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLY 719 (801)
Q Consensus 640 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~ 719 (801)
+.+.+.. .+...... .+.-+.+|+.++|..+ +..+....+ .++.+|+.+.
T Consensus 291 ~~i~l~~-~i~~I~~~---------------------------aF~~c~~L~~i~lp~~-v~~I~~~aF-~~C~~L~~i~ 340 (394)
T 4gt6_A 291 QDIEFSS-RITELPES---------------------------VFAGCISLKSIDIPEG-ITQILDDAF-AGCEQLERIA 340 (394)
T ss_dssp CEEECCT-TCCEECTT---------------------------TTTTCTTCCEEECCTT-CCEECTTTT-TTCTTCCEEE
T ss_pred ccccCCC-cccccCce---------------------------eecCCCCcCEEEeCCc-ccEehHhHh-hCCCCCCEEE
Confidence 9999853 23322211 1122468888888754 455665544 5889999999
Q ss_pred eeCCcCCCCCCCcccccceeccccccccccccccccCcCCCCceeeccCCCCCcccCCCCC
Q 045877 720 IRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGY 780 (801)
Q Consensus 720 L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n 780 (801)
|..+ ++.++...| -++.+|+.+++..+.... . .+..|..|+.+.+..+
T Consensus 341 ip~s-v~~I~~~aF-----~~C~~L~~i~~~~~~~~~---~----~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 341 IPSS-VTKIPESAF-----SNCTALNNIEYSGSRSQW---N----AISTDSGLQNLPVAPG 388 (394)
T ss_dssp ECTT-CCBCCGGGG-----TTCTTCCEEEESSCHHHH---H----TCBCCCCC--------
T ss_pred ECcc-cCEEhHhHh-----hCCCCCCEEEECCceeeh---h----hhhccCCCCEEEeCCC
Confidence 9654 777777777 455666666665554321 0 2356667777666544
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-07 Score=100.21 Aligned_cols=185 Identities=14% Similarity=0.035 Sum_probs=107.4
Q ss_pred hhhhccccccccccchhhc---------chhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCC
Q 045877 418 EFEKIKKLFNFSLSLEEIE---------NKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDI 488 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~ 488 (801)
+...+++|+.|.+..+.+. +.+...+...++|+.|.+.++.-..+.+ + .+++|+.|+|..|.++.
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~--- 207 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPD--- 207 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCH---
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCCh---
Confidence 4556777777777654321 1244556677899999997763223322 3 38899999999988742
Q ss_pred CcccccchhhhHhhc--CCcCCceEeecCC--CCCc-----cCchhh--cCCCCCCEEeccCCCCCCCCcccc---cCCC
Q 045877 489 PHIEIESTDYLKGLK--NMKELRLLSLQGM--SGIQ-----ELPSEI--SYLTSLEILDLRACYNLDKLPDEI---GKLK 554 (801)
Q Consensus 489 ~~~~~~~~~lp~~l~--~l~~L~~L~Ls~n--~~~~-----~lp~~i--~~L~~L~~L~Ls~n~~~~~lp~~~---~~L~ 554 (801)
.....+. .+++|++|+|+.+ ...+ .+...+ ..+++|++|+|++|.+....+..+ ..++
T Consensus 208 --------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 208 --------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp --------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred --------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 2233443 7999999999642 1111 111222 246778888887775443222222 2356
Q ss_pred CCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhh
Q 045877 555 SLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVL 634 (801)
Q Consensus 555 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~ 634 (801)
+|++|+|+.|.+...-. ..+...+.++++|+.|+|++|.++... ...+.
T Consensus 280 ~L~~LdLs~n~L~d~G~-----------------------------~~L~~~L~~l~~L~~L~L~~n~i~d~~--~~~l~ 328 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGA-----------------------------RLLLDHVDKIKHLKFINMKYNYLSDEM--KKELQ 328 (362)
T ss_dssp GCSEEECCSSCCBHHHH-----------------------------HHHHTTHHHHTTCSEEECCSBBCCHHH--HHHHH
T ss_pred CCCEEECCCCCCChHHH-----------------------------HHHHhhcccCCcceEEECCCCcCCHHH--HHHHH
Confidence 67777776665432100 012233456778888888888776543 33444
Q ss_pred cccCCcEEEeeccC
Q 045877 635 AFKRLLQLKVSWGG 648 (801)
Q Consensus 635 ~l~~L~~L~L~~n~ 648 (801)
..- ...++++.+.
T Consensus 329 ~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHC-CSEEECCSBC
T ss_pred HHc-CCEEEecCCc
Confidence 311 3557887776
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.7e-07 Score=92.24 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=7.5
Q ss_pred CCCEEcccCCccccCC
Q 045877 555 SLTHLDISECFLLDGI 570 (801)
Q Consensus 555 ~L~~L~Ls~n~l~~~~ 570 (801)
+|++|+|++|.+.+.+
T Consensus 221 ~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTF 236 (267)
T ss_dssp CCSEEECTTSTTGGGC
T ss_pred CcceEEccCCcCcccc
Confidence 4455555555444433
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.11 E-value=9.8e-05 Score=80.27 Aligned_cols=126 Identities=8% Similarity=0.007 Sum_probs=70.0
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 498 (801)
+..-.+|+.+.+. +.++.+...+|.++.+|+.+.+.. .+..+...+|.++ .|+.+.+..+ ++ .+
T Consensus 42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~------------~I 105 (379)
T 4h09_A 42 YKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VK------------KF 105 (379)
T ss_dssp GGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CC------------EE
T ss_pred cccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-ee------------Ee
Confidence 3344455555554 357777777888888888887753 4666777778777 4666666543 21 11
Q ss_pred h-HhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCC
Q 045877 499 L-KGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISEC 564 (801)
Q Consensus 499 p-~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n 564 (801)
. ..|.. .+|+.+.+..+ ....-...+.+ .+|..+.+-.+ ....-...+..+.+|+.+.+..+
T Consensus 106 ~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 106 GDYVFQG-TDLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CTTTTTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred ccceecc-CCcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccc
Confidence 1 23333 36777777653 32222233333 35555555543 33333345556666666665543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00013 Score=79.28 Aligned_cols=255 Identities=10% Similarity=0.022 Sum_probs=144.7
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
..|....+|+.++|.. .++.+...+|.+. .|..+.+. +.+..+...+|.++ +|+.+.+..+-....
T Consensus 63 ~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~-~~l~~I~~~aF~~~-~L~~i~lp~~~~~i~---------- 128 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGM-ERVKKFGDYVFQGT-DLDDFEFPGATTEIG---------- 128 (379)
T ss_dssp TTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEEC-TTCCEECTTTTTTC-CCSEEECCTTCCEEC----------
T ss_pred HHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECC-ceeeEeccceeccC-CcccccCCCcccccc----------
Confidence 4578888999999975 4888888999887 57777664 44677777888876 799999987632111
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCC------------CcccccCCCCCCEEcccCC
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDK------------LPDEIGKLKSLTHLDISEC 564 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~------------lp~~~~~L~~L~~L~Ls~n 564 (801)
...|.++ +|+.+.+..+ ....-...+..+.+|+.+.+..+..... ....+.....+..+.+...
T Consensus 129 --~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (379)
T 4h09_A 129 --NYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST 204 (379)
T ss_dssp --TTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT
T ss_pred --ccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccc
Confidence 1234444 6777777653 4444446678888999888876432211 1112223333444433322
Q ss_pred ccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEe
Q 045877 565 FLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKV 644 (801)
Q Consensus 565 ~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L 644 (801)
. .......+....+|+.+. +..+. .......+..+.+|+.+.+..+ +.... ..+|.++.+|+.+.+
T Consensus 205 ~-~~i~~~~f~~~~~l~~i~---~~~~~-------~~i~~~~f~~~~~L~~i~lp~~-v~~I~--~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 205 V-KTVTAYGFSYGKNLKKIT---ITSGV-------TTLGDGAFYGMKALDEIAIPKN-VTSIG--SFLLQNCTALKTLNF 270 (379)
T ss_dssp C-CEECTTTTTTCSSCSEEE---CCTTC-------CEECTTTTTTCSSCCEEEECTT-CCEEC--TTTTTTCTTCCEEEE
T ss_pred e-eEEeecccccccccceee---eccce-------eEEccccccCCccceEEEcCCC-ccEeC--ccccceeehhccccc
Confidence 1 112223344445555444 32222 1111234556666776666544 22222 345666666776666
Q ss_pred eccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCc
Q 045877 645 SWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGR 724 (801)
Q Consensus 645 ~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~ 724 (801)
..+ +... ......-+.+|+.+.+.++.+..++...+ .++.+|+.+.|..+
T Consensus 271 ~~~-i~~i---------------------------~~~aF~~c~~L~~i~l~~~~i~~I~~~aF-~~c~~L~~i~lp~~- 320 (379)
T 4h09_A 271 YAK-VKTV---------------------------PYLLCSGCSNLTKVVMDNSAIETLEPRVF-MDCVKLSSVTLPTA- 320 (379)
T ss_dssp CCC-CSEE---------------------------CTTTTTTCTTCCEEEECCTTCCEECTTTT-TTCTTCCEEECCTT-
T ss_pred ccc-ceec---------------------------cccccccccccccccccccccceehhhhh-cCCCCCCEEEcCcc-
Confidence 432 2111 11111223677788777766666666554 57778888887643
Q ss_pred CCCCCCCcc
Q 045877 725 LNSLEGSEW 733 (801)
Q Consensus 725 l~~~~~~~f 733 (801)
++.++...|
T Consensus 321 l~~I~~~aF 329 (379)
T 4h09_A 321 LKTIQVYAF 329 (379)
T ss_dssp CCEECTTTT
T ss_pred ccEEHHHHh
Confidence 566666555
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.8e-06 Score=84.19 Aligned_cols=82 Identities=22% Similarity=0.204 Sum_probs=45.9
Q ss_pred ccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCC--CCCEEeccCCCCCCC
Q 045877 468 SKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLT--SLEILDLRACYNLDK 545 (801)
Q Consensus 468 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~--~L~~L~Ls~n~~~~~ 545 (801)
.++++|+.|+|++|++++. ..++..+..+++|++|+|++|.+.+. ..+..+. +|++|+|++|.+.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l---------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL---------DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC---------GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCC---------ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 4556666666666666432 13344555666666666666644332 2233333 667777777665554
Q ss_pred Ccc-------cccCCCCCCEEc
Q 045877 546 LPD-------EIGKLKSLTHLD 560 (801)
Q Consensus 546 lp~-------~~~~L~~L~~L~ 560 (801)
+|. .+..+++|+.||
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEES
T ss_pred cCcchhHHHHHHHHCcccCeEC
Confidence 442 245667777766
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-06 Score=82.70 Aligned_cols=93 Identities=14% Similarity=0.004 Sum_probs=55.4
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----CchhhcCCCCCCEEec--cCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----LPSEISYLTSLEILDL--RAC 540 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~L--s~n 540 (801)
+...+.|++|+|++|.+.... ...+...+...++|++|+|++|.+... +...+...+.|++|+| ++|
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g-------~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPV-------AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHH-------HHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHhCCCcCEEECcCCCCChHH-------HHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 445566777777777763210 123445556667777777777754332 3455666677777777 666
Q ss_pred CCCCC----CcccccCCCCCCEEcccCCcc
Q 045877 541 YNLDK----LPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 541 ~~~~~----lp~~~~~L~~L~~L~Ls~n~l 566 (801)
.+... +...+...+.|++|+|++|.+
T Consensus 134 ~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 134 PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 44332 223344556777777777765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=7e-06 Score=79.71 Aligned_cols=122 Identities=10% Similarity=-0.021 Sum_probs=91.6
Q ss_pred hhhhhhhhccccccccccch-hhcch----hhhhhccccCceeeecCCcccCCC----ChhhhccCCCCCEEEcCCcccC
Q 045877 414 QKAVEFEKIKKLFNFSLSLE-EIENK----AKDCAMKRGRIETLFNVSEEFPEF----KYDWFSKLEKIKVLYLGRWQST 484 (801)
Q Consensus 414 ~~~~~~~~l~~L~~L~Ls~N-~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~----~~~~f~~l~~L~~L~Ls~n~l~ 484 (801)
..+.-+...++|++|+|++| .|... +...+...+.|++|++.+|.|... ....+...+.|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34556677889999999999 88754 344455678999999999998652 2345667789999999999985
Q ss_pred CCCCCcccccchhhhHhhcCCcCCceEee--cCCCCCcc----CchhhcCCCCCCEEeccCCCC
Q 045877 485 VDDIPHIEIESTDYLKGLKNMKELRLLSL--QGMSGIQE----LPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 485 ~~~~~~~~~~~~~lp~~l~~l~~L~~L~L--s~n~~~~~----lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
... ...+...+...++|++|+| ++|.+... +...+...+.|++|+|++|.+
T Consensus 107 ~~g-------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSG-------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHH-------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHH-------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 311 1245677888899999999 77765443 445566779999999999854
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.51 E-value=4.9e-05 Score=72.27 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=52.5
Q ss_pred CCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccC-chhhcCC----CCCCEEeccCCCCCCC-
Q 045877 472 KIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQEL-PSEISYL----TSLEILDLRACYNLDK- 545 (801)
Q Consensus 472 ~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~l-p~~i~~L----~~L~~L~Ls~n~~~~~- 545 (801)
.|+.|||++|.++.. . ...+..+++|++|+|++|..++.- -..++.+ ++|++|+|++|..++.
T Consensus 62 ~L~~LDLs~~~Itd~----------G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI----------G-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCCCCGG----------G-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCCccHH----------H-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 578888888876432 1 244567888888888887544431 2345554 3688888888753322
Q ss_pred CcccccCCCCCCEEcccCCc
Q 045877 546 LPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 546 lp~~~~~L~~L~~L~Ls~n~ 565 (801)
--..+.++++|++|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 11345667788888888775
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00016 Score=68.66 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=61.4
Q ss_pred CceeeecCCcccCCCChhhhccCCCCCEEEcCCcc-cCCCCCCcccccchhhhHhhcCC----cCCceEeecCCCCCcc-
Q 045877 448 RIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDYLKGLKNM----KELRLLSLQGMSGIQE- 521 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~lp~~l~~l----~~L~~L~Ls~n~~~~~- 521 (801)
+|+.|++++..+...--..+.+|++|+.|+|++|. ++. .-...+..+ ++|++|+|++|..++.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-----------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-----------GCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-----------HHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-----------HHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 45666666655554444556889999999999996 431 223455554 4799999999975543
Q ss_pred CchhhcCCCCCCEEeccCCCCCCC
Q 045877 522 LPSEISYLTSLEILDLRACYNLDK 545 (801)
Q Consensus 522 lp~~i~~L~~L~~L~Ls~n~~~~~ 545 (801)
--..+.++++|++|+|++|..++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 225678899999999999965543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.022 Score=55.04 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=49.1
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----CchhhcCCCCCCEEeccCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----LPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
+..-+.|+.|+|++|.+... ....+-+.+..-+.|++|+|++|.+... +-+.+..=+.|++|+|++|..
T Consensus 66 L~~N~~L~~L~L~~n~igd~-------ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDS-------EARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHH-------HHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred HhhCCCcCEEEccCCCCChH-------HHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence 34445577777777766311 1123445555566777777777644322 223344445577777765421
Q ss_pred --CC-----CCcccccCCCCCCEEcccCCc
Q 045877 543 --LD-----KLPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 543 --~~-----~lp~~~~~L~~L~~L~Ls~n~ 565 (801)
++ .+-..+..-+.|+.|+++.|.
T Consensus 139 ~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 139 SVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 12 122234444667777777664
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.014 Score=56.35 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=9.7
Q ss_pred hHhhcCCcCCceEeecCCC
Q 045877 499 LKGLKNMKELRLLSLQGMS 517 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~ 517 (801)
-+.+..-.+|+.|+|++|.
T Consensus 63 a~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp HHHHTTCSCCCEEECTTSC
T ss_pred HHHHhhCCCcCEEEccCCC
Confidence 3444444555555555553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.055 Score=48.56 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=30.4
Q ss_pred ccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCC
Q 045877 681 ERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLN 726 (801)
Q Consensus 681 ~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~ 726 (801)
.+...+|.+|+.|+|++|.+..+|..++ ..+++|+.|+|.+|.+.
T Consensus 24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAFPVDTTELVLTGNNLTALPPGLL-DALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCCCTTCSEEECTTSCCSSCCTTTG-GGCTTCCEEECCSSCCB
T ss_pred cCCCCCCcCCCEEECCCCcCCccChhhh-hhccccCEEEecCCCee
Confidence 3333456677777777777777776654 46777777777777653
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.048 Score=48.93 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=45.9
Q ss_pred cEEEccCCCCC--CCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc
Q 045877 691 EKLDFQCFPDE--KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ 755 (801)
Q Consensus 691 ~~L~L~~n~~~--~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~ 755 (801)
..++.+++.++ .+|..+. ++|++|+|++|+|+.++...| -.+.+|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp----~~l~~L~Ls~N~l~~l~~~~f-----~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP----VDTTELVLTGNNLTALPPGLL-----DALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC----TTCSEEECTTSCCSSCCTTTG-----GGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC----cCCCEEECCCCcCCccChhhh-----hhccccCEEEecCCCee
Confidence 46788888887 8997655 579999999999999999888 45567788888888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 801 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.001 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 9e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 46.5 bits (109), Expect = 9e-06
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 467 FSKLEKIKVLYLGRWQ---------STVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMS 517
S L K+ L LG Q T + + + + N+K L L+L +
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318
Query: 518 GIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577
I ++ +S LT L+ L N + L ++ L + D P L+ L
Sbjct: 319 -ISDIS-PVSSLTKLQRLFFA--NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANL 372
Query: 578 SKLQVLKGFVISDHA 592
+++ L ++D A
Sbjct: 373 TRITQLG---LNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 0.001
Identities = 41/290 (14%), Positives = 77/290 (26%), Gaps = 22/290 (7%)
Query: 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDIS 562
+ E L + + + L + L + + D + L +LT ++ S
Sbjct: 19 TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFS 74
Query: 563 ECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS 622
L D P L L+KL + + L + + +
Sbjct: 75 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132
Query: 623 EKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTER 682
+ E S ++ L S S +
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER----LDISSNKVS 188
Query: 683 SQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLK 742
V +KL L+ + ++ NL L + G +L + + L
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-------LASLT 241
Query: 743 YLNELKIDWKGLQELFP-----KLEYLEKFKCHKVTLCPCDGYGIWEKSD 787
L +L + + L P KL L+ + P G +
Sbjct: 242 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 43.6 bits (101), Expect = 5e-05
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 521 ELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIP 571
LP ++ L L L++ ++P + G L+ + L G P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 40.1 bits (92), Expect = 7e-04
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 536 DLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583
DLR LP + +LK L L++S L IP + L + V
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 9e-05
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 521 ELPSEISYLTSLEILDLRACYNL-DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSK 579
+ E L L+ L L CY++ + E+G++ +L L + + L
Sbjct: 191 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH 250
Query: 580 LQV 582
LQ+
Sbjct: 251 LQI 253
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 6e-04
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 3/116 (2%)
Query: 516 MSGIQELPSEISYLTSLEILDLRACYN-LDKLPDEIGKLKSLTHLDISECFLLDGIPKKL 574
++G P L S ++ R + +D+ E + H+D+S +
Sbjct: 7 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-- 64
Query: 575 SLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENL 630
+LS+ L+ + D +L +L + + + +
Sbjct: 65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.3 bits (98), Expect = 1e-04
Identities = 34/258 (13%), Positives = 77/258 (29%), Gaps = 21/258 (8%)
Query: 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECF 565
+ LL LQ + + L +L L L P L L L +S+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 566 LLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL-----------KDLEKLEHLR 614
L + K L +L+V + + + + + + ++
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 615 KLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTK 674
KL+ ++ T + L L NK TK + + K + L
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHL-------DGNKITKVDAAS-LKGLNNLAKLGL 202
Query: 675 FRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVH-PYSFKNLKNLYIRGGRLNSLEGSEW 733
++ + L + KL K ++ +Y+ ++++ +++
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262
Query: 734 ETVKVL-RLKYLNELKID 750
+ + + +
Sbjct: 263 CPPGYNTKKASYSGVSLF 280
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.001
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 9/149 (6%)
Query: 469 KLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISY 528
++E++K++ R+ + + + S L L S L
Sbjct: 8 QVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSM----AATLRIIEEN 63
Query: 529 LTSLEILDLRAC--YNLDKLPDEIGKLKSLTHLDISECFL--LDGIPKKLSLLSKLQVLK 584
+ L L+L Y LD + + K +L L++S L + K L + L
Sbjct: 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 123
Query: 585 GFVISDHAEDDRRWKRWCSLKDLEKLEHL 613
G +SD D + + KL L
Sbjct: 124 GNSLSDTFRDQSTYISAI-RERFPKLLRL 151
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 0.002
Identities = 10/103 (9%), Positives = 29/103 (28%), Gaps = 7/103 (6%)
Query: 507 ELRLLSLQGMS-GIQELPSEISYLTSLEILDLRACY----NLDKLPDEIGKLKSLTHLDI 561
+++ L +Q + L +++ L C + + +L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 562 SECFLLDGIPKKLS--LLSKLQVLKGFVISDHAEDDRRWKRWC 602
L D + L + ++ + +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 801 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.86 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.86 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.85 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.83 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.82 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.79 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.75 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.75 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.73 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.72 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.63 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.58 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.56 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.56 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.55 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.54 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.53 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.49 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.43 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.43 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.34 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.29 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.29 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.26 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.23 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.22 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.22 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.21 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.16 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.14 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.09 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.98 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.94 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.84 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.61 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.04 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.04 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.91 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.76 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.87 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.45 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.86 E-value=5.2e-22 Score=210.15 Aligned_cols=248 Identities=16% Similarity=0.114 Sum_probs=177.1
Q ss_pred CceeeecCCcccCCC--ChhhhccCCCCCEEEcCC-cccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 448 RIETLFNVSEEFPEF--KYDWFSKLEKIKVLYLGR-WQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~--~~~~f~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
+++.|.+.++.+.+. .|..+.++++|++|+|++ |.+++ .+|..|+++++|++|+|++|.+.+..+.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-----------~iP~~i~~L~~L~~L~Ls~N~l~~~~~~ 119 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-----------PIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-----------CCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-----------ccccccccccccchhhhccccccccccc
Confidence 344455555544432 355677888888888876 56643 4577788888888888888877777777
Q ss_pred hhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc-cccccccccCCcchhhhhhcccC
Q 045877 525 EISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL-QVLKGFVISDHAEDDRRWKRWCS 603 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L-~~L~~~~l~~n~~~~~~~~~~~~ 603 (801)
.+..+.+|+++++++|...+.+|..++++++|+++++++|.+.+.+|..+..+..+ +.+. ++.|. + ....
T Consensus 120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~---~~~n~-----l-~~~~ 190 (313)
T d1ogqa_ 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT---ISRNR-----L-TGKI 190 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE---CCSSE-----E-EEEC
T ss_pred cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccc---ccccc-----c-cccc
Confidence 78888888888888887778888888888888888888888887888877777766 4454 55555 1 1223
Q ss_pred cccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccc
Q 045877 604 LKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERS 683 (801)
Q Consensus 604 ~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~ 683 (801)
+..+..+.. ..+++..+...+.. +..+..+++|+.|++++|.+.+..+ ..
T Consensus 191 ~~~~~~l~~-~~l~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~l~~~~~--------------------------~~- 240 (313)
T d1ogqa_ 191 PPTFANLNL-AFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFDLG--------------------------KV- 240 (313)
T ss_dssp CGGGGGCCC-SEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCBGG--------------------------GC-
T ss_pred ccccccccc-cccccccccccccc--ccccccccccccccccccccccccc--------------------------cc-
Confidence 455555544 36777777776665 6777788888888888887765322 11
Q ss_pred cccCCCccEEEccCCCCC-CCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccc
Q 045877 684 QHVESKLEKLDFQCFPDE-KLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGL 754 (801)
Q Consensus 684 ~~~~~~L~~L~L~~n~~~-~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l 754 (801)
...++|+.|+|++|.+. .+|.++. ++++|++|+|++|+|+|..|. + ..+.+|+.+++.+|..
T Consensus 241 -~~~~~L~~L~Ls~N~l~g~iP~~l~--~L~~L~~L~Ls~N~l~g~iP~-~-----~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 241 -GLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQ-G-----GNLQRFDVSAYANNKC 303 (313)
T ss_dssp -CCCTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCSSEEEEECCC-S-----TTGGGSCGGGTCSSSE
T ss_pred -ccccccccccCccCeecccCChHHh--CCCCCCEEECcCCcccccCCC-c-----ccCCCCCHHHhCCCcc
Confidence 11368899999988877 7899887 899999999999999865542 2 3567777788777763
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.86 E-value=2.9e-22 Score=212.18 Aligned_cols=235 Identities=20% Similarity=0.191 Sum_probs=194.6
Q ss_pred CCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecC-CCCCccCchhhcCCCCCCEEeccCCCCCCCCccc
Q 045877 471 EKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQG-MSGIQELPSEISYLTSLEILDLRACYNLDKLPDE 549 (801)
Q Consensus 471 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~-n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~ 549 (801)
.+++.|+|++|.+++. ..+|..++++++|++|+|++ |.+.+.+|.+|++|++|++|+|++|++.+..+..
T Consensus 50 ~~v~~L~L~~~~l~g~---------~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~ 120 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKP---------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSC---------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred EEEEEEECCCCCCCCC---------CCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 3688999999998653 25688999999999999987 6788899999999999999999999999988999
Q ss_pred ccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccC-CeeEeeccccccccc
Q 045877 550 IGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHL-RKLTININSEKFQTE 628 (801)
Q Consensus 550 ~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L-~~L~L~~n~~~~~~~ 628 (801)
+..+.+|+++++++|.+.+.+|..+++++.|+.++ +++|. + ...+|..+..+..+ +.+++++|++.+..
T Consensus 121 ~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~---l~~n~-----l-~~~ip~~~~~l~~l~~~l~~~~n~l~~~~- 190 (313)
T d1ogqa_ 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT---FDGNR-----I-SGAIPDSYGSFSKLFTSMTISRNRLTGKI- 190 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE---CCSSC-----C-EEECCGGGGCCCTTCCEEECCSSEEEEEC-
T ss_pred ccchhhhcccccccccccccCchhhccCcccceee---ccccc-----c-ccccccccccccccccccccccccccccc-
Confidence 99999999999999999999999999999999998 88876 1 23467788888776 78999999988776
Q ss_pred ChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccC
Q 045877 629 NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVH 708 (801)
Q Consensus 629 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~ 708 (801)
+..+..+..+ .+++..+...+..+. .... ..+|+.|+++++.+...+..+.
T Consensus 191 -~~~~~~l~~~-~l~l~~~~~~~~~~~--------------------------~~~~-~~~l~~l~~~~~~l~~~~~~~~ 241 (313)
T d1ogqa_ 191 -PPTFANLNLA-FVDLSRNMLEGDASV--------------------------LFGS-DKNTQKIHLAKNSLAFDLGKVG 241 (313)
T ss_dssp -CGGGGGCCCS-EEECCSSEEEECCGG--------------------------GCCT-TSCCSEEECCSSEECCBGGGCC
T ss_pred -cccccccccc-ccccccccccccccc--------------------------cccc-cccccccccccccccccccccc
Confidence 6677776544 688887766654321 1222 3689999999988776666666
Q ss_pred CCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccCcCCC
Q 045877 709 PYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPK 760 (801)
Q Consensus 709 ~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~ 760 (801)
.+++|+.|+|++|+|++..|..| ..+++|++|+|++|.++|.+|.
T Consensus 242 --~~~~L~~L~Ls~N~l~g~iP~~l-----~~L~~L~~L~Ls~N~l~g~iP~ 286 (313)
T d1ogqa_ 242 --LSKNLNGLDLRNNRIYGTLPQGL-----TQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp --CCTTCCEEECCSSCCEECCCGGG-----GGCTTCCEEECCSSEEEEECCC
T ss_pred --cccccccccCccCeecccCChHH-----hCCCCCCEEECcCCcccccCCC
Confidence 89999999999999998777666 4678899999999999887775
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.85 E-value=3.4e-20 Score=201.45 Aligned_cols=300 Identities=16% Similarity=0.157 Sum_probs=196.2
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccch
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIEST 496 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 496 (801)
.....+.+|++|+++++.|+.+ ..+..+++|++|++.+|.|..+++ |.++++|++|+|++|.+..
T Consensus 38 ~~~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~----------- 102 (384)
T d2omza2 38 VSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD----------- 102 (384)
T ss_dssp ECHHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----------
T ss_pred cCHHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccc-----------
Confidence 3456778889999999988765 345678889999999998888764 8889999999999998843
Q ss_pred hhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCC----------------------------------
Q 045877 497 DYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYN---------------------------------- 542 (801)
Q Consensus 497 ~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~---------------------------------- 542 (801)
++ .+.++++|++|++++|...+ ++. ......+..+....|.+
T Consensus 103 -i~-~l~~l~~L~~L~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (384)
T d2omza2 103 -IT-PLANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178 (384)
T ss_dssp -CG-GGTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCC
T ss_pred -cc-cccccccccccccccccccc-ccc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccc
Confidence 22 37888899999988874433 222 22333444443332211
Q ss_pred -------CCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCe
Q 045877 543 -------LDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRK 615 (801)
Q Consensus 543 -------~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~ 615 (801)
.......+..+++++.|++++|.+.+..| +..+.+|+.|+ +++|. .. .+..+..+++|+.
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~---l~~n~-------l~-~~~~l~~l~~L~~ 245 (384)
T d2omza2 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS---LNGNQ-------LK-DIGTLASLTNLTD 245 (384)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE---CCSSC-------CC-CCGGGGGCTTCSE
T ss_pred cccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEE---CCCCC-------CC-Ccchhhcccccch
Confidence 11112345567778888888877665443 44566777777 66665 22 2346677778888
Q ss_pred eEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEc
Q 045877 616 LTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDF 695 (801)
Q Consensus 616 L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L 695 (801)
|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +. . ...++.+.+
T Consensus 246 L~l~~n~l~~~----~~~~~~~~L~~L~l~~~~l~~~~~---------------------------~~-~-~~~l~~l~~ 292 (384)
T d2omza2 246 LDLANNQISNL----APLSGLTKLTELKLGANQISNISP---------------------------LA-G-LTALTNLEL 292 (384)
T ss_dssp EECCSSCCCCC----GGGTTCTTCSEEECCSSCCCCCGG---------------------------GT-T-CTTCSEEEC
T ss_pred hccccCccCCC----CcccccccCCEeeccCcccCCCCc---------------------------cc-c-ccccccccc
Confidence 88888876653 246777788888887777664321 11 1 246777777
Q ss_pred cCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccccccc-----CcCCCCceeeccCCC
Q 045877 696 QCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ-----ELFPKLEYLEKFKCH 770 (801)
Q Consensus 696 ~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~-----~~~p~L~~L~l~~c~ 770 (801)
..|.+..++. +. .+++++.|++++|+++++.+ + -.+++|+.|++++|.++ +.+++|++|+++++
T Consensus 293 ~~n~l~~~~~-~~--~~~~l~~L~ls~n~l~~l~~--l-----~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N- 361 (384)
T d2omza2 293 NENQLEDISP-IS--NLKNLTYLTLYFNNISDISP--V-----SSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN- 361 (384)
T ss_dssp CSSCCSCCGG-GG--GCTTCSEEECCSSCCSCCGG--G-----GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-
T ss_pred cccccccccc-cc--hhcccCeEECCCCCCCCCcc--c-----ccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCC-
Confidence 7776665543 33 67777788888877777643 2 12344455555555443 34677888888766
Q ss_pred CCcccCCCCCcccccCCcceEeCCCc
Q 045877 771 KVTLCPCDGYGIWEKSDLINLNNSKQ 796 (801)
Q Consensus 771 ~L~~lp~~~n~i~~~~~L~~LdlS~~ 796 (801)
+++.++ .+.++++|++|++++|
T Consensus 362 ~l~~l~----~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 362 QISDLT----PLANLTRITQLGLNDQ 383 (384)
T ss_dssp CCCBCG----GGTTCTTCSEEECCCE
T ss_pred cCCCCh----hhccCCCCCEeeCCCC
Confidence 666665 3677899999999987
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.83 E-value=1.5e-19 Score=190.18 Aligned_cols=268 Identities=15% Similarity=0.121 Sum_probs=174.9
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK 506 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~ 506 (801)
.+|-++++++.+++.. .+.+++|++.+|.|..+++..|.++++|++|++++|.+... .+..|.+++
T Consensus 14 ~~~C~~~~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-----------~~~~f~~l~ 79 (305)
T d1xkua_ 14 VVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-----------SPGAFAPLV 79 (305)
T ss_dssp EEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-----------CTTTTTTCT
T ss_pred EEEecCCCCCccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-----------chhhhhCCC
Confidence 3444555555543322 14577777777777777777777777777777777776432 145677777
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc--cCCCcccCCCCcccccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL--DGIPKKLSLLSKLQVLK 584 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~--~~~p~~~~~L~~L~~L~ 584 (801)
+|++|++++|. +..+|..+ ...|+.|++.+|.+....+..+.....+..++...|... ...+..+..+++|+.++
T Consensus 80 ~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~ 156 (305)
T d1xkua_ 80 KLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156 (305)
T ss_dssp TCCEEECCSSC-CSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred ccCEecccCCc-cCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccc
Confidence 77777777764 44555433 356777777777665555555666667777777666432 23334566666666666
Q ss_pred cccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCcc
Q 045877 585 GFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRK 664 (801)
Q Consensus 585 ~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 664 (801)
++++. ...++.. .+++|+.|++++|...... +..+.+++.++.|++++|.+.+..+..+
T Consensus 157 ---l~~n~-------l~~l~~~--~~~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~s~n~l~~~~~~~~------- 215 (305)
T d1xkua_ 157 ---IADTN-------ITTIPQG--LPPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL------- 215 (305)
T ss_dssp ---CCSSC-------CCSCCSS--CCTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG-------
T ss_pred ---cccCC-------ccccCcc--cCCccCEEECCCCcCCCCC--hhHhhccccccccccccccccccccccc-------
Confidence 66665 2333332 3577888888888877665 6778888888899988888776433211
Q ss_pred chhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccce-ecccc
Q 045877 665 DNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKV-LRLKY 743 (801)
Q Consensus 665 ~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~-l~L~~ 743 (801)
.. .++|++|+|++|.+..+|.++. .+++|++|+|++|+|+.++...|..+.. ..+..
T Consensus 216 -------------------~~-l~~L~~L~L~~N~L~~lp~~l~--~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~ 273 (305)
T d1xkua_ 216 -------------------AN-TPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273 (305)
T ss_dssp -------------------GG-STTCCEEECCSSCCSSCCTTTT--TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred -------------------cc-cccceeeecccccccccccccc--cccCCCEEECCCCccCccChhhccCcchhcccCC
Confidence 11 3689999999999888988877 8999999999999998887766632211 12344
Q ss_pred ccccccccccc
Q 045877 744 LNELKIDWKGL 754 (801)
Q Consensus 744 L~~L~l~~n~l 754 (801)
|+.|++++|.+
T Consensus 274 L~~L~L~~N~~ 284 (305)
T d1xkua_ 274 YSGVSLFSNPV 284 (305)
T ss_dssp CSEEECCSSSS
T ss_pred CCEEECCCCcC
Confidence 45555555544
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.82 E-value=2.4e-19 Score=194.63 Aligned_cols=294 Identities=19% Similarity=0.186 Sum_probs=184.3
Q ss_pred hhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcc-----
Q 045877 417 VEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHI----- 491 (801)
Q Consensus 417 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~----- 491 (801)
..++.+++|++|+|++|+|+++.+ +..+++|+.|.+.+|.+..+.+ +.++++|+.|++++|.++.......
T Consensus 60 ~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~ 135 (384)
T d2omza2 60 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLN 135 (384)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 568899999999999999999865 8899999999999999988754 8999999999999998865321100
Q ss_pred --c-----cc------------------chhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC
Q 045877 492 --E-----IE------------------STDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 492 --~-----~~------------------~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
. +. .......+.............| .......+..+++++.|++++|.+.+..
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~l~l~~n~i~~~~ 213 (384)
T d2omza2 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNNQISDIT 213 (384)
T ss_dssp EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS--CCCCCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhhcccccccccccccc--ccccccccccccccceeeccCCccCCCC
Confidence 0 00 0000111122222222233322 1223344666777888888877555443
Q ss_pred cccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccc
Q 045877 547 PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQ 626 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~ 626 (801)
| ++.+++|++|++++|.+.. + ..+..+++|+.|+ +++|. ... ...+..+++|++|+++++.+...
T Consensus 214 ~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~---l~~n~-------l~~-~~~~~~~~~L~~L~l~~~~l~~~ 278 (384)
T d2omza2 214 P--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLD---LANNQ-------ISN-LAPLSGLTKLTELKLGANQISNI 278 (384)
T ss_dssp G--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE---CCSSC-------CCC-CGGGTTCTTCSEEECCSSCCCCC
T ss_pred c--ccccCCCCEEECCCCCCCC-c-chhhcccccchhc---cccCc-------cCC-CCcccccccCCEeeccCcccCCC
Confidence 3 4556778888888877653 2 3566677777776 66665 222 23467777788888877776543
Q ss_pred ccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcc
Q 045877 627 TENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSW 706 (801)
Q Consensus 627 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~ 706 (801)
..+..+..++.+.+..|.+.+.. .. ....+++.|++++|.+..++.
T Consensus 279 ----~~~~~~~~l~~l~~~~n~l~~~~---------------------------~~--~~~~~l~~L~ls~n~l~~l~~- 324 (384)
T d2omza2 279 ----SPLAGLTALTNLELNENQLEDIS---------------------------PI--SNLKNLTYLTLYFNNISDISP- 324 (384)
T ss_dssp ----GGGTTCTTCSEEECCSSCCSCCG---------------------------GG--GGCTTCSEEECCSSCCSCCGG-
T ss_pred ----Ccccccccccccccccccccccc---------------------------cc--chhcccCeEECCCCCCCCCcc-
Confidence 34666777777777777665421 00 113567777777777666653
Q ss_pred cCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccccccccCcCCCCceeeccCCCCCcccCCCCC
Q 045877 707 VHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQELFPKLEYLEKFKCHKVTLCPCDGY 780 (801)
Q Consensus 707 l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~~~~p~L~~L~l~~c~~L~~lp~~~n 780 (801)
+. .+++|++|+|++|+|++++ .+ -.+++|+.|++++|.+++-.| +.+|++|+.|.+.+|
T Consensus 325 l~--~l~~L~~L~L~~n~l~~l~--~l-----~~l~~L~~L~l~~N~l~~l~~------l~~l~~L~~L~L~~N 383 (384)
T d2omza2 325 VS--SLTKLQRLFFANNKVSDVS--SL-----ANLTNINWLSAGHNQISDLTP------LANLTRITQLGLNDQ 383 (384)
T ss_dssp GG--GCTTCCEEECCSSCCCCCG--GG-----GGCTTCCEEECCSSCCCBCGG------GTTCTTCSEEECCCE
T ss_pred cc--cCCCCCEEECCCCCCCCCh--hH-----cCCCCCCEEECCCCcCCCChh------hccCCCCCEeeCCCC
Confidence 33 6777777777777776653 23 245666777777776653211 344555555555443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.79 E-value=1.6e-18 Score=182.31 Aligned_cols=257 Identities=14% Similarity=0.102 Sum_probs=204.9
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
+++++|+|++|+|+.+.+..|..+++|++|.+.+|.+..+.+..|.+++.|++|+|++|+++ .+|..
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~------------~l~~~- 97 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK------------ELPEK- 97 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS------------BCCSS-
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC------------cCccc-
Confidence 57999999999999999999999999999999999999999999999999999999999985 33332
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCC--CCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNL--DKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~--~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
....|+.|++.+|.+....+..+.....++.++...|... ...+..+..+++|+++++++|.+. .+|..+ +++|
T Consensus 98 -~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L 173 (305)
T d1xkua_ 98 -MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSL 173 (305)
T ss_dssp -CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTC
T ss_pred -hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCcc
Confidence 3468899999998666555566778889999999887432 344567888999999999999876 455443 5788
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQ 660 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 660 (801)
+.|+ +++|. .....+..+.+++.+++|++++|.+.... +..+.++++|+.|+|++|.+..... .
T Consensus 174 ~~L~---l~~n~------~~~~~~~~~~~~~~l~~L~~s~n~l~~~~--~~~~~~l~~L~~L~L~~N~L~~lp~-~---- 237 (305)
T d1xkua_ 174 TELH---LDGNK------ITKVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNKLVKVPG-G---- 237 (305)
T ss_dssp SEEE---CTTSC------CCEECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSCCSSCCT-T----
T ss_pred CEEE---CCCCc------CCCCChhHhhccccccccccccccccccc--cccccccccceeeeccccccccccc-c----
Confidence 8888 66665 12234567899999999999999998876 6788999999999999999875421 1
Q ss_pred CCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccC-----CCCCCCccEEEeeCCcCC--CCCCCcc
Q 045877 661 TGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVH-----PYSFKNLKNLYIRGGRLN--SLEGSEW 733 (801)
Q Consensus 661 ~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~-----~~~l~~L~~L~L~~n~l~--~~~~~~f 733 (801)
... .++|+.|+|++|.++.++...+ ...+.+|+.|+|++|.++ .+.+..|
T Consensus 238 ----------------------l~~-l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f 294 (305)
T d1xkua_ 238 ----------------------LAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294 (305)
T ss_dssp ----------------------TTT-CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred ----------------------ccc-ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence 122 3699999999999998876543 135789999999999875 4555555
Q ss_pred cc
Q 045877 734 ET 735 (801)
Q Consensus 734 ~~ 735 (801)
+.
T Consensus 295 ~~ 296 (305)
T d1xkua_ 295 RC 296 (305)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8.7e-18 Score=174.63 Aligned_cols=223 Identities=16% Similarity=0.096 Sum_probs=147.5
Q ss_pred ecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCC
Q 045877 453 FNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSL 532 (801)
Q Consensus 453 ~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L 532 (801)
...+.++..++.... +.+++|+|++|+++... +..|.++++|++|++++|.+....+..+..+..+
T Consensus 17 ~c~~~~L~~iP~~ip---~~~~~L~Ls~N~i~~i~-----------~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~ 82 (284)
T d1ozna_ 17 SCPQQGLQAVPVGIP---AASQRIFLHGNRISHVP-----------AASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82 (284)
T ss_dssp ECCSSCCSSCCTTCC---TTCSEEECTTSCCCEEC-----------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred EcCCCCCCccCCCCC---CCCCEEECcCCcCCCCC-----------HHHhhccccccccccccccccccccccccccccc
Confidence 334444544433222 35677777777774221 2456777777777777765555555666667777
Q ss_pred CEEeccCCCCCCCC-cccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCc-ccccCC
Q 045877 533 EILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSL-KDLEKL 610 (801)
Q Consensus 533 ~~L~Ls~n~~~~~l-p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L 610 (801)
+.++...+.....+ +..|.++++|++|++++|.+....+..+..+.+|+.++ +++|. ...++ ..|..+
T Consensus 83 ~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~---l~~N~-------l~~i~~~~f~~~ 152 (284)
T d1ozna_ 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY---LQDNA-------LQALPDDTFRDL 152 (284)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE---CCSSC-------CCCCCTTTTTTC
T ss_pred cccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhh---hcccc-------ccccChhHhccc
Confidence 77766544344333 55677777777777777776655555666677777776 66666 33343 457777
Q ss_pred ccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCc
Q 045877 611 EHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKL 690 (801)
Q Consensus 611 ~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L 690 (801)
++|+.|++++|.+.... +..|.++++|+.+++++|.+.+..+..+ .. .++|
T Consensus 153 ~~L~~L~l~~N~l~~l~--~~~f~~l~~L~~l~l~~N~l~~i~~~~f--------------------------~~-l~~L 203 (284)
T d1ozna_ 153 GNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHPHAF--------------------------RD-LGRL 203 (284)
T ss_dssp TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTT--------------------------TT-CTTC
T ss_pred cchhhcccccCcccccc--hhhhccccccchhhhhhccccccChhHh--------------------------hh-hhhc
Confidence 88888888888877665 5677888888888888888776544322 11 3678
Q ss_pred cEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCC
Q 045877 691 EKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLE 729 (801)
Q Consensus 691 ~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~ 729 (801)
+.|++++|.+..++...+ ..+++|++|+|++|.+....
T Consensus 204 ~~L~l~~N~i~~~~~~~~-~~~~~L~~L~l~~N~l~C~C 241 (284)
T d1ozna_ 204 MTLYLFANNLSALPTEAL-APLRALQYLRLNDNPWVCDC 241 (284)
T ss_dssp CEEECCSSCCSCCCHHHH-TTCTTCCEEECCSSCEECSG
T ss_pred cccccccccccccccccc-ccccccCEEEecCCCCCCCc
Confidence 888888888877775332 38899999999999876543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.9e-18 Score=176.56 Aligned_cols=208 Identities=15% Similarity=0.065 Sum_probs=179.9
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCc-ccCCCCCCcccccchhhhHh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRW-QSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~lp~~ 501 (801)
+++++|+|++|+|+++.+..|..++.|+.|.+.+|.+..+....+.++..++.++...+ .++.. -+..
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-----------~~~~ 100 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-----------DPAT 100 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-----------CTTT
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-----------cchh
Confidence 46789999999999999999999999999999999999999999999999999987644 44321 2567
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
|.++++|++|++++|......+..+..+.+|+.+++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|+
T Consensus 101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~ 180 (284)
T d1ozna_ 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (284)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence 89999999999999876555567788899999999999987766677888999999999999999887788899999999
Q ss_pred ccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
.++ +++|. + ....+..|..+++|++|++++|.+.... +..|..+++|++|+|++|.+...
T Consensus 181 ~l~---l~~N~-----l-~~i~~~~f~~l~~L~~L~l~~N~i~~~~--~~~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 181 RLL---LHQNR-----V-AHVHPHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp EEE---CCSSC-----C-CEECTTTTTTCTTCCEEECCSSCCSCCC--HHHHTTCTTCCEEECCSSCEECS
T ss_pred hhh---hhhcc-----c-cccChhHhhhhhhccccccccccccccc--ccccccccccCEEEecCCCCCCC
Confidence 998 88887 1 2234678999999999999999998877 78899999999999999988753
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=6.4e-18 Score=173.87 Aligned_cols=201 Identities=17% Similarity=0.055 Sum_probs=158.2
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
+...+..+|.++++|+.+++. +. +.++.|++.+|.|..+++..|.++++|++|+|++|+++. ++
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~-lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~------------l~- 71 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------LQ- 71 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------EE-
T ss_pred ccCCCeEEEccCCCCCeeCcC-cC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc------------cc-
Confidence 445556678888888875433 21 468888999999988888889999999999999998842 22
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
.+..+++|++|+|++|. +...+..+.++++|++|++++|......+..+..+.+|++|++++|.+....+..+..+++|
T Consensus 72 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l 150 (266)
T d1p9ag_ 72 VDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (266)
T ss_dssp CCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccc
Confidence 35678899999999985 45567778889999999999987777777778888999999999998876666677888888
Q ss_pred cccccccccCCcchhhhhhcccCc-ccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSL-KDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSA 651 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~-~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 651 (801)
+.|+ +++|. ....+ ..|..+++|++|+|++|++... +..+..+++|+.|+|++|.+.-
T Consensus 151 ~~l~---l~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~L~~l---p~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 151 EKLS---LANNN-------LTELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp CEEE---CTTSC-------CSCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCCCSEEECCSCCBCC
T ss_pred hhcc---ccccc-------ccccCccccccccccceeecccCCCccc---ChhHCCCCCCCEEEecCCCCCC
Confidence 8888 88887 44444 4678899999999999998754 4566778899999999987753
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=9.5e-18 Score=172.55 Aligned_cols=179 Identities=16% Similarity=0.017 Sum_probs=159.3
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
+++++|+|++|+|+++.+..|..+++|+.|.+.+|.|..++ .+..+++|++|+|++|+++ ..+..+
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~------------~~~~~~ 96 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQ------------SLPLLG 96 (266)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCS------------SCCCCT
T ss_pred cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccccccc------------cccccc
Confidence 47899999999999999999999999999999999998764 4678999999999999985 335678
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
..+++|++|++++|...+..+..+..+.+|++|++++|.+....+..+..+++|++|++++|++.+..+..|..+++|++
T Consensus 97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~ 176 (266)
T d1p9ag_ 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (266)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccce
Confidence 89999999999998777666778889999999999999777666777888999999999999999887888999999999
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccc
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKF 625 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~ 625 (801)
|+ +++|. +..+|..+..+++|+.|+|++|.+.-
T Consensus 177 L~---Ls~N~-------L~~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 177 LL---LQENS-------LYTIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp EE---CCSSC-------CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ee---cccCC-------CcccChhHCCCCCCCEEEecCCCCCC
Confidence 99 99998 66788889999999999999998753
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.63 E-value=1.6e-14 Score=153.82 Aligned_cols=289 Identities=17% Similarity=0.098 Sum_probs=154.4
Q ss_pred cccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhh
Q 045877 423 KKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGL 502 (801)
Q Consensus 423 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l 502 (801)
.++++|||++|.++.++ +. .++|++|.+++|+|..++. .+.+|+.|++++|+++... .+|
T Consensus 38 ~~l~~LdLs~~~L~~lp-~~---~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~---------~lp--- 97 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLP-EL---PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALS---------DLP--- 97 (353)
T ss_dssp HTCSEEECTTSCCSCCC-SC---CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC---------SCC---
T ss_pred cCCCEEEeCCCCCCCCC-CC---CCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhh---------hhc---
Confidence 36889999999998754 32 4689999999999998753 3568999999999885321 111
Q ss_pred cCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 503 KNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 503 ~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
..|++|+|++|. +..+|. ++.+++|++|++++|... ..+.. ...+..+.+.++... ....+..+..++.
T Consensus 98 ---~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~ 166 (353)
T d1jl5a_ 98 ---PLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTA 166 (353)
T ss_dssp ---TTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCE
T ss_pred ---cccccccccccc-cccccc-hhhhccceeecccccccc-ccccc---cccccchhhcccccc--cccccccccccee
Confidence 469999999985 567775 688999999999998543 33322 344555555554332 2233445555555
Q ss_pred cccccccCCcchhh------------hhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCC
Q 045877 583 LKGFVISDHAEDDR------------RWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 583 L~~~~l~~n~~~~~------------~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
|+ +..+..... ..........+..++.|+.+++++|...... ....++..+.+..+.+.
T Consensus 167 L~---l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~------~~~~~l~~~~~~~~~~~ 237 (353)
T d1jl5a_ 167 IY---ADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP------DLPPSLEALNVRDNYLT 237 (353)
T ss_dssp EE---CCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC------SCCTTCCEEECCSSCCS
T ss_pred cc---cccccccccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccc
Confidence 54 333320000 0000011223455666666666666543322 22334555566555544
Q ss_pred CCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCC
Q 045877 651 ANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEG 730 (801)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~ 730 (801)
...... ..+.......+.+..+ ..++......++..+.+..++. .+++|++|+|++|+|+.++.
T Consensus 238 ~~~~~~----------~~l~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~-----~~~~L~~L~Ls~N~l~~lp~ 301 (353)
T d1jl5a_ 238 DLPELP----------QSLTFLDVSENIFSGL-SELPPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNNKLIELPA 301 (353)
T ss_dssp CCCCCC----------TTCCEEECCSSCCSEE-SCCCTTCCEEECCSSCCSEECC-----CCTTCCEEECCSSCCSCCCC
T ss_pred cccccc----------cccccccccccccccc-ccccchhcccccccCccccccc-----cCCCCCEEECCCCccCcccc
Confidence 322110 0000011111111111 1112333444444433332221 34566666666666665542
Q ss_pred Ccccccceecccccccccccccccc---CcCCCCceeeccCCCCCcccCC
Q 045877 731 SEWETVKVLRLKYLNELKIDWKGLQ---ELFPKLEYLEKFKCHKVTLCPC 777 (801)
Q Consensus 731 ~~f~~L~~l~L~~L~~L~l~~n~l~---~~~p~L~~L~l~~c~~L~~lp~ 777 (801)
.+ .+|+.|++++|.++ ..+++|++|++++|+ |+.+|.
T Consensus 302 -~~--------~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~-L~~lp~ 341 (353)
T d1jl5a_ 302 -LP--------PRLERLIASFNHLAEVPELPQNLKQLHVEYNP-LREFPD 341 (353)
T ss_dssp -CC--------TTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred -cc--------CCCCEEECCCCcCCccccccCCCCEEECcCCc-CCCCCc
Confidence 23 23333444444443 234567777777764 776664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9.2e-15 Score=147.47 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=112.0
Q ss_pred eeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhh-HhhcCCcCCceEeecCCCCCccCc-hhhcC
Q 045877 451 TLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYL-KGLKNMKELRLLSLQGMSGIQELP-SEISY 528 (801)
Q Consensus 451 ~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp-~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~ 528 (801)
.+.-.+..+..++...+ ++++.|+|++|.++ .++ ..|.++++|++|+|++|.....++ ..|.+
T Consensus 12 ~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~------------~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~ 76 (242)
T d1xwdc1 12 VFLCQESKVTEIPSDLP---RNAIELRFVLTKLR------------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 76 (242)
T ss_dssp EEEEESCSCSSCCSCSC---SCCSEEEEESCCCC------------EECTTTTTTCTTCCEEEEESCTTCCEECSSSEES
T ss_pred EEEEeCCCCCCcCCCCC---CCCCEEECcCCcCC------------ccChhHhhccchhhhhhhccccccceeecccccc
Confidence 33334444555544333 35666666666663 222 245666666666666665544333 34566
Q ss_pred CCCCCEEeccC-CCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccc
Q 045877 529 LTSLEILDLRA-CYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDL 607 (801)
Q Consensus 529 L~~L~~L~Ls~-n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l 607 (801)
++++++|.+.. |.+....+..|.++++|++|++++|.+... + .+..+.++
T Consensus 77 l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~-~-~~~~~~~l--------------------------- 127 (242)
T d1xwdc1 77 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-P-DVHKIHSL--------------------------- 127 (242)
T ss_dssp CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSC-C-CCTTTCBS---------------------------
T ss_pred ccccccccccccccccccccccccccccccccccchhhhccc-c-cccccccc---------------------------
Confidence 66666666543 333344445556666666666666654321 1 12222222
Q ss_pred cCCccCCeeEeecccccccccChhhhhccc-CCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccccccccccccc
Q 045877 608 EKLEHLRKLTININSEKFQTENLSTVLAFK-RLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHV 686 (801)
Q Consensus 608 ~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~ 686 (801)
..|..+...++.+.... ...+.+++ .++.|++++|.+.......+ ..
T Consensus 128 ---~~l~~~~~~n~~l~~i~--~~~~~~~~~~l~~L~l~~n~l~~i~~~~~---------------------------~~ 175 (242)
T d1xwdc1 128 ---QKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKNGIQEIHNCAF---------------------------NG 175 (242)
T ss_dssp ---SCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSSCCCEECTTTT---------------------------TT
T ss_pred ---ccccccccccccccccc--ccccccccccceeeecccccccccccccc---------------------------cc
Confidence 22222333333333222 23344443 67777887777764332111 11
Q ss_pred CCCccEE-EccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCccc
Q 045877 687 ESKLEKL-DFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWE 734 (801)
Q Consensus 687 ~~~L~~L-~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~ 734 (801)
.++..+ .+++|.++.+|.+.+ .++++|++|+|++|+|+.++...|.
T Consensus 176 -~~l~~~~~l~~n~l~~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~ 222 (242)
T d1xwdc1 176 -TQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRTRIHSLPSYGLE 222 (242)
T ss_dssp -CCEEEEECTTCTTCCCCCTTTT-TTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred -hhhhccccccccccccccHHHh-cCCCCCCEEECCCCcCCccCHHHHc
Confidence 344444 567788888888765 5889999999999999888776663
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=1.3e-14 Score=144.86 Aligned_cols=194 Identities=20% Similarity=0.190 Sum_probs=137.3
Q ss_pred hccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhH
Q 045877 421 KIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLK 500 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~ 500 (801)
.|.++..++++.+++++.. .+..+.+|+.|.+.++.|..+. .+.++++|++|+|++|.++.. .
T Consensus 17 ~l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~-------------~ 79 (227)
T d1h6ua2 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDL-------------A 79 (227)
T ss_dssp HHHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-------------G
T ss_pred HHHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecc-------------c
Confidence 3455555667777776654 3345677888888888887763 378888888888888887431 2
Q ss_pred hhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcc
Q 045877 501 GLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKL 580 (801)
Q Consensus 501 ~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L 580 (801)
.+.++.+|++|++++|. +..++ .+..+++|++|++++|...+. ..+.....++.+.++++.+.... .+..+++|
T Consensus 80 ~l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L 153 (227)
T d1h6ua2 80 PLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNL 153 (227)
T ss_dssp GGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTC
T ss_pred ccccccccccccccccc-ccccc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhcccccc
Confidence 37888888888888874 44554 477888888888888755443 33667778888888888765432 36677788
Q ss_pred cccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCC
Q 045877 581 QVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSAN 652 (801)
Q Consensus 581 ~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 652 (801)
++|+ ++++. . .....++++++|+.|++++|++... ..+.++++|++|+|++|++++.
T Consensus 154 ~~L~---l~~n~-------~-~~~~~l~~l~~L~~L~Ls~n~l~~l----~~l~~l~~L~~L~Ls~N~lt~i 210 (227)
T d1h6ua2 154 QYLS---IGNAQ-------V-SDLTPLANLSKLTTLKADDNKISDI----SPLASLPNLIEVHLKNNQISDV 210 (227)
T ss_dssp CEEE---CCSSC-------C-CCCGGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECTTSCCCBC
T ss_pred cccc---ccccc-------c-ccchhhcccccceecccCCCccCCC----hhhcCCCCCCEEECcCCcCCCC
Confidence 8887 66665 2 2234577888888888888887653 3478888888888888887643
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.56 E-value=1.9e-14 Score=143.76 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=158.4
Q ss_pred hhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccc
Q 045877 416 AVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIES 495 (801)
Q Consensus 416 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 495 (801)
...+.++.+|+.|++.+|+|+.+ ..+..+++|+.|.+.+|.+..+.+ |.++++|+.|++++|.++.
T Consensus 34 ~~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~---------- 99 (227)
T d1h6ua2 34 TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---------- 99 (227)
T ss_dssp EECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC----------
T ss_pred cCCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc----------
Confidence 45667899999999999999876 347889999999999999988754 8999999999999998843
Q ss_pred hhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccC
Q 045877 496 TDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLS 575 (801)
Q Consensus 496 ~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~ 575 (801)
+ ..+..+++|++|++++|...+ + ..+.....++.+.+++|.+... ..+..+++|++|++++|.+.... .++
T Consensus 100 --i-~~l~~l~~L~~l~l~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~ 170 (227)
T d1h6ua2 100 --V-SAIAGLQSIKTLDLTSTQITD-V-TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLA 170 (227)
T ss_dssp --C-GGGTTCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGT
T ss_pred --c-ccccccccccccccccccccc-c-chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhc
Confidence 2 357889999999999985443 3 3467789999999998865543 34778899999999999876433 488
Q ss_pred CCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeec
Q 045877 576 LLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSW 646 (801)
Q Consensus 576 ~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~ 646 (801)
++++|+.|+ +++|. ... +..+.++++|++|+|++|+++.. ..+.++++|+.|++++
T Consensus 171 ~l~~L~~L~---Ls~n~-------l~~-l~~l~~l~~L~~L~Ls~N~lt~i----~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 171 NLSKLTTLK---ADDNK-------ISD-ISPLASLPNLIEVHLKNNQISDV----SPLANTSNLFIVTLTN 226 (227)
T ss_dssp TCTTCCEEE---CCSSC-------CCC-CGGGGGCTTCCEEECTTSCCCBC----GGGTTCTTCCEEEEEE
T ss_pred ccccceecc---cCCCc-------cCC-ChhhcCCCCCCEEECcCCcCCCC----cccccCCCCCEEEeeC
Confidence 999999999 88887 333 44589999999999999998764 3588999999999974
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.56 E-value=1.3e-14 Score=143.11 Aligned_cols=185 Identities=19% Similarity=0.209 Sum_probs=130.9
Q ss_pred ccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhc
Q 045877 424 KLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLK 503 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~ 503 (801)
++....+..+.+++..... .+..++.|.+.++.+..+.. +..+++|++|+|++|.++. ++ .++
T Consensus 25 ~~i~~~l~~~~~~~~~~~~--~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~------------l~-~~~ 87 (210)
T d1h6ta2 25 ETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD------------IK-PLA 87 (210)
T ss_dssp HHHHHHTTCSCTTSEECHH--HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCC------------CG-GGT
T ss_pred HHHHHHhCcCccCCccCHH--HhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccC------------cc-ccc
Confidence 3334455555555544332 34567777777777766543 6788888888888888753 22 367
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVL 583 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L 583 (801)
.+++|++|++++|. +..+| .++.+++|+.|++++|... .+ ..+..+++|+.+++++|.+.. +..+..+++|+++
T Consensus 88 ~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l 161 (210)
T d1h6ta2 88 NLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL 161 (210)
T ss_dssp TCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred cCcccccccccccc-ccccc-ccccccccccccccccccc-cc-ccccccccccccccccccccc--ccccccccccccc
Confidence 78888889988874 44565 4888888899988887543 33 357788888888888888653 2346677888888
Q ss_pred ccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEEEeec
Q 045877 584 KGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSW 646 (801)
Q Consensus 584 ~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~ 646 (801)
+ +++|. ... ...+.++++|+.|+|++|+++.. ..+.++++|++|+|++
T Consensus 162 ~---l~~n~-------l~~-i~~l~~l~~L~~L~Ls~N~i~~l----~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 162 S---LEDNQ-------ISD-IVPLAGLTKLQNLYLSKNHISDL----RALAGLKNLDVLELFS 209 (210)
T ss_dssp E---CCSSC-------CCC-CGGGTTCTTCCEEECCSSCCCBC----GGGTTCTTCSEEEEEE
T ss_pred c---ccccc-------ccc-cccccCCCCCCEEECCCCCCCCC----hhhcCCCCCCEEEccC
Confidence 7 77776 333 33578889999999999987643 4688889999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.55 E-value=2.1e-14 Score=140.23 Aligned_cols=183 Identities=23% Similarity=0.231 Sum_probs=131.3
Q ss_pred ccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHh
Q 045877 422 IKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKG 501 (801)
Q Consensus 422 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~ 501 (801)
++.+....++.+.+++.... ..+.+++.|.+.++.+..+. .+..+++|++|+|++|+++. ++ .
T Consensus 17 l~~~i~~~l~~~~~~~~~~~--~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~------------~~-~ 79 (199)
T d2omxa2 17 LAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD------------IT-P 79 (199)
T ss_dssp HHHHHHHHTTCSSTTSEECH--HHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC------------CG-G
T ss_pred HHHHHHHHhCCCCCCCccCH--HHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccC------------cc-c
Confidence 44445556677776665433 24567888888888877653 37788899999999998853 22 3
Q ss_pred hcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCccc
Q 045877 502 LKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQ 581 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 581 (801)
++++++|++|++++|. ...++ .++++++|+.|++++|..... ..+..+++|++|++++|++.. ++ .+..+++|+
T Consensus 80 l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~ 153 (199)
T d2omxa2 80 LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQ 153 (199)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred ccCCcccccccccccc-ccccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-ccccccccc
Confidence 7888899999998874 44555 378889999999988755442 347788899999999888653 33 577888888
Q ss_pred ccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhhhhcccCCcEE
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLSTVLAFKRLLQL 642 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L 642 (801)
.|+ +.+|. ... ...++++++|++|++++|+++.. ..+.++++|+.|
T Consensus 154 ~L~---l~~n~-------l~~-l~~l~~l~~L~~L~ls~N~i~~i----~~l~~L~~L~~L 199 (199)
T d2omxa2 154 QLN---FSSNQ-------VTD-LKPLANLTTLERLDISSNKVSDI----SVLAKLTNLESL 199 (199)
T ss_dssp EEE---CCSSC-------CCC-CGGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCSEE
T ss_pred ccc---ccccc-------ccC-CccccCCCCCCEEECCCCCCCCC----ccccCCCCCCcC
Confidence 888 77776 322 34578888888888888887643 357778888765
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.54 E-value=3.3e-14 Score=140.07 Aligned_cols=168 Identities=22% Similarity=0.249 Sum_probs=139.5
Q ss_pred hhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh
Q 045877 419 FEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498 (801)
Q Consensus 419 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 498 (801)
..++.+|+.|++++|.|..... +..+++|++|.+.+|.|..+.+ +.++++|++|++++|+++ .+
T Consensus 42 ~~~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~------------~l 105 (210)
T d1h6ta2 42 QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK------------DL 105 (210)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC------------CG
T ss_pred HHHhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc--cccCcccccccccccccc------------cc
Confidence 3568899999999999987653 6678999999999999998764 789999999999999984 33
Q ss_pred hHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCC
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLS 578 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~ 578 (801)
+ .+..+++|++|++++|.. ..++ .+..+++|+.+++++|.+.. +..+..+++|+++++++|++.+ ++ .+.+++
T Consensus 106 ~-~l~~l~~L~~L~l~~~~~-~~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~ 178 (210)
T d1h6ta2 106 S-SLKDLKKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLT 178 (210)
T ss_dssp G-GGTTCTTCCEEECTTSCC-CCCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCT
T ss_pred c-cccccccccccccccccc-cccc-cccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCC
Confidence 4 588999999999999854 4444 58899999999999986543 3457889999999999999875 43 388999
Q ss_pred cccccccccccCCcchhhhhhcccCcccccCCccCCeeEeec
Q 045877 579 KLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTINI 620 (801)
Q Consensus 579 ~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~ 620 (801)
+|+.|+ +++|. ...+ +.+.++++|++|+|++
T Consensus 179 ~L~~L~---Ls~N~-------i~~l-~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 179 KLQNLY---LSKNH-------ISDL-RALAGLKNLDVLELFS 209 (210)
T ss_dssp TCCEEE---CCSSC-------CCBC-GGGTTCTTCSEEEEEE
T ss_pred CCCEEE---CCCCC-------CCCC-hhhcCCCCCCEEEccC
Confidence 999999 88887 4433 4699999999999975
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.53 E-value=4.3e-13 Score=142.38 Aligned_cols=281 Identities=18% Similarity=0.125 Sum_probs=161.9
Q ss_pred cCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhh
Q 045877 447 GRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEI 526 (801)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i 526 (801)
.+++.|++.++.+..++. ..++|++|+|++|+++ .+|.. +.+|+.|++++|. +..++. +
T Consensus 38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~------------~lp~~---~~~L~~L~l~~n~-l~~l~~-l 96 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLT------------ELPEL---PQSLKSLLVDNNN-LKALSD-L 96 (353)
T ss_dssp HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCS------------SCCCC---CTTCCEEECCSSC-CSCCCS-C
T ss_pred cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCc------------ccccc---hhhhhhhhhhhcc-cchhhh-h
Confidence 468889999999987753 3578999999999984 34433 4578999999974 444443 1
Q ss_pred cCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCccc
Q 045877 527 SYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKD 606 (801)
Q Consensus 527 ~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~ 606 (801)
.+.|++|++++|. +..+|. ++.+++|++|++++|.+. ..+..+..+.. +. +.... ......
T Consensus 97 --p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~---l~---~~~~~--------~~~~~~ 157 (353)
T d1jl5a_ 97 --PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IA---AGNNQ--------LEELPE 157 (353)
T ss_dssp --CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCCS-CCCCCCTTCCE---EE---CCSSC--------CSSCCC
T ss_pred --ccccccccccccc-cccccc-hhhhccceeecccccccc-ccccccccccc---hh---hcccc--------cccccc
Confidence 1469999999985 456674 688999999999999865 34444444433 33 22222 123445
Q ss_pred ccCCccCCeeEeeccccccccc----------------ChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchh
Q 045877 607 LEKLEHLRKLTININSEKFQTE----------------NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIK 670 (801)
Q Consensus 607 l~~L~~L~~L~L~~n~~~~~~~----------------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~ 670 (801)
+..++.++.|++.+|....... ....+..++.|+.+++++|........ ...+.
T Consensus 158 l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~----------~~~l~ 227 (353)
T d1jl5a_ 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL----------PPSLE 227 (353)
T ss_dssp CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC----------CTTCC
T ss_pred ccccccceecccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------ccccc
Confidence 6778888888888877543221 012234445556666655544322110 00011
Q ss_pred hhhcccccccccccccCCCccEEEccCCCCCCCCcccCCCCCCCccEEEeeCCcCCCCCCCcccccceeccccccccccc
Q 045877 671 TLTKFRTRVTERSQHVESKLEKLDFQCFPDEKLPSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKID 750 (801)
Q Consensus 671 ~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~ 750 (801)
.+....+.+.... ..+..+..+++..+.+..+... .......++..+.+.++.. .+++|++|+++
T Consensus 228 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~l-----~~~~~~~~~~~~~~~~~~~---------~~~~L~~L~Ls 292 (353)
T d1jl5a_ 228 ALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSEL-----PPNLYYLNASSNEIRSLCD---------LPPSLEELNVS 292 (353)
T ss_dssp EEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESCC-----CTTCCEEECCSSCCSEECC---------CCTTCCEEECC
T ss_pred ccccccccccccc-cccccccccccccccccccccc-----cchhcccccccCccccccc---------cCCCCCEEECC
Confidence 1111111111110 1112333333333222211111 1122333444444333321 13567777777
Q ss_pred ccccc---CcCCCCceeeccCCCCCcccCCCCCcccccCCcceEeCCCcccc
Q 045877 751 WKGLQ---ELFPKLEYLEKFKCHKVTLCPCDGYGIWEKSDLINLNNSKQQHR 799 (801)
Q Consensus 751 ~n~l~---~~~p~L~~L~l~~c~~L~~lp~~~n~i~~~~~L~~LdlS~~~~~ 799 (801)
+|.++ ..+++|+.|++.+| +|+.+|. .+.+|+.||+++|+++
T Consensus 293 ~N~l~~lp~~~~~L~~L~L~~N-~L~~l~~------~~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 293 NNKLIELPALPPRLERLIASFN-HLAEVPE------LPQNLKQLHVEYNPLR 337 (353)
T ss_dssp SSCCSCCCCCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSCCS
T ss_pred CCccCccccccCCCCEEECCCC-cCCcccc------ccCCCCEEECcCCcCC
Confidence 77765 55789999999877 6888774 2468999999999975
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=9.1e-14 Score=140.00 Aligned_cols=204 Identities=13% Similarity=0.060 Sum_probs=121.9
Q ss_pred CCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCC-cccCCCCcccccccccccC-CcchhhhhhcccCccccc
Q 045877 531 SLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIP-KKLSLLSKLQVLKGFVISD-HAEDDRRWKRWCSLKDLE 608 (801)
Q Consensus 531 ~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p-~~~~~L~~L~~L~~~~l~~-n~~~~~~~~~~~~~~~l~ 608 (801)
++++|+|++|.+....+..|.++++|++|++++|.+...++ ..|..++++++|. ... +. .....+..|.
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~---~~~~n~------l~~~~~~~~~ 100 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR---IEKANN------LLYINPEAFQ 100 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE---EECCTT------CCEECTTSEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc---cccccc------cccccccccc
Confidence 45555555553332222334555555555555555444332 2344555555554 211 11 0122335577
Q ss_pred CCccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCC
Q 045877 609 KLEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVES 688 (801)
Q Consensus 609 ~L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~ 688 (801)
.+++|+.|++++|.+.... ....+..+..+..+...++.+....... ...++.
T Consensus 101 ~l~~L~~l~l~~~~l~~~~-~~~~~~~l~~l~~~~~~n~~l~~i~~~~--------------------------~~~~~~ 153 (242)
T d1xwdc1 101 NLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNS--------------------------FVGLSF 153 (242)
T ss_dssp CCTTCCEEEEESCCCCSCC-CCTTTCBSSCEEEEEESCTTCCEECTTS--------------------------STTSBS
T ss_pred ccccccccccchhhhcccc-cccccccccccccccccccccccccccc--------------------------cccccc
Confidence 8888888888888776432 1233445555665555555554332211 112246
Q ss_pred CccEEEccCCCCCCCCcccCCCCCCCccEE-EeeCCcCCCCCCCcccccceecccccccccccccccc----CcCCCCce
Q 045877 689 KLEKLDFQCFPDEKLPSWVHPYSFKNLKNL-YIRGGRLNSLEGSEWETVKVLRLKYLNELKIDWKGLQ----ELFPKLEY 763 (801)
Q Consensus 689 ~L~~L~L~~n~~~~lp~~l~~~~l~~L~~L-~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~n~l~----~~~p~L~~ 763 (801)
.++.|++++|.+..++..++ +..++..+ .+++|.++.++...| -.+++|+.|++++|.++ +.|.+|..
T Consensus 154 ~l~~L~l~~n~l~~i~~~~~--~~~~l~~~~~l~~n~l~~l~~~~f-----~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 226 (242)
T d1xwdc1 154 ESVILWLNKNGIQEIHNCAF--NGTQLDELNLSDNNNLEELPNDVF-----HGASGPVILDISRTRIHSLPSYGLENLKK 226 (242)
T ss_dssp SCEEEECCSSCCCEECTTTT--TTCCEEEEECTTCTTCCCCCTTTT-----TTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred cceeeecccccccccccccc--cchhhhccccccccccccccHHHh-----cCCCCCCEEECCCCcCCccCHHHHcCCcc
Confidence 89999999999988888877 67777666 467788999988777 45678888888888876 44666666
Q ss_pred eeccCCCCCcccCC
Q 045877 764 LEKFKCHKVTLCPC 777 (801)
Q Consensus 764 L~l~~c~~L~~lp~ 777 (801)
|...++.+|+.+|.
T Consensus 227 L~~l~~~~l~~lp~ 240 (242)
T d1xwdc1 227 LRARSTYNLKKLPT 240 (242)
T ss_dssp EESSSEESSSCSCC
T ss_pred cccCcCCCCCcCCC
Confidence 66666666666653
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=2.3e-13 Score=132.62 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=134.7
Q ss_pred hhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchh
Q 045877 418 EFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTD 497 (801)
Q Consensus 418 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 497 (801)
....+.+++.|++++|.|..+. .+..+++|++|++.+|.+..+.+ |.++++|+.|++++|.+..
T Consensus 35 ~~~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~------------ 98 (199)
T d2omxa2 35 SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD------------ 98 (199)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC------------
T ss_pred CHHHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc------------
Confidence 4467889999999999998753 36678999999999999998765 8999999999999998842
Q ss_pred hhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCC
Q 045877 498 YLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLL 577 (801)
Q Consensus 498 lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L 577 (801)
++ .+.++++|++|++++|.... + ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|++.+ ++ .++++
T Consensus 99 ~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l 171 (199)
T d2omxa2 99 IT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANL 171 (199)
T ss_dssp CG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTC
T ss_pred cc-cccccccccccccccccccc-c-cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCC
Confidence 23 48899999999999985543 3 34888999999999999654 444 58899999999999999875 33 48999
Q ss_pred CcccccccccccCCcchhhhhhcccCcccccCCccCCee
Q 045877 578 SKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKL 616 (801)
Q Consensus 578 ~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L 616 (801)
++|++|+ +++|. ... ++.++.+++|+.|
T Consensus 172 ~~L~~L~---ls~N~-------i~~-i~~l~~L~~L~~L 199 (199)
T d2omxa2 172 TTLERLD---ISSNK-------VSD-ISVLAKLTNLESL 199 (199)
T ss_dssp TTCCEEE---CCSSC-------CCC-CGGGGGCTTCSEE
T ss_pred CCCCEEE---CCCCC-------CCC-CccccCCCCCCcC
Confidence 9999999 88887 333 3468888888876
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.43 E-value=6.4e-14 Score=135.89 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=68.2
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCC-CChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCC
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPE-FKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNM 505 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l 505 (801)
.++.++++++.++...+ ..+++|++.+|.|.. +....|.++++|+.|+|++|.+... .+..+..+
T Consensus 12 ~v~Cs~~~L~~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-----------~~~~~~~~ 77 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-----------EPNAFEGA 77 (192)
T ss_dssp EEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-----------CTTTTTTC
T ss_pred EEEEeCCCcCccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-----------cccccccc
Confidence 45566666655433221 345555666666643 3455555666666666666655321 13445555
Q ss_pred cCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccc
Q 045877 506 KELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 506 ~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
++|++|+|++|.+....|..|.++++|++|+|++|.+.+..+..|..+++|++|+|++|.+.
T Consensus 78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 56666666665444333445555666666666665555444555555566666666655543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.43 E-value=7.1e-14 Score=135.56 Aligned_cols=173 Identities=14% Similarity=0.042 Sum_probs=122.1
Q ss_pred eeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCC
Q 045877 450 ETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYL 529 (801)
Q Consensus 450 ~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L 529 (801)
.++...++++..++.+.+ +++++|+|++|+|+.. ..+..|..+++|++|+|++|.+....+..+..+
T Consensus 11 ~~v~Cs~~~L~~iP~~lp---~~l~~L~Ls~N~i~~~----------~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~ 77 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRI----------SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSB----------CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CEEEEeCCCcCccCCCCC---CCCCEEEeCCCCCccc----------ccccccCCCceEeeeeccccccccccccccccc
Confidence 467777888888766543 5788999999988532 113567888999999999988777777888899
Q ss_pred CCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccC
Q 045877 530 TSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEK 609 (801)
Q Consensus 530 ~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~ 609 (801)
++|++|+|++|++....|..|.++++|++|+|++|++.+..+..|..+++|++|+ +++|. .........-
T Consensus 78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~---L~~N~-------~~~~~~~~~~ 147 (192)
T d1w8aa_ 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN---LASNP-------FNCNCHLAWF 147 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE---CTTCC-------BCCSGGGHHH
T ss_pred cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccc---ccccc-------cccccchHHH
Confidence 9999999999977777777888999999999999998877777888888898888 77776 2222211111
Q ss_pred CccCCeeEeecccccccccChhhhhcccCCcEEEeeccCCC
Q 045877 610 LEHLRKLTININSEKFQTENLSTVLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 610 L~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 650 (801)
...|+.+.+..+.+.... +. .+..++.++|+.|.+.
T Consensus 148 ~~~l~~~~l~~~~~~c~~--p~---~l~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 148 AEWLRKKSLNGGAARCGA--PS---KVRDVQIKDLPHSEFK 183 (192)
T ss_dssp HHHHHHHCCSGGGCBBCS--ST---TTTTSBGGGSCTTTCC
T ss_pred hhhhhhhcccCCCeEeCC--Ch---hhcCCEeeecCHhhCc
Confidence 123445555555544332 32 3344555566666554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.3e-13 Score=140.58 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=114.6
Q ss_pred cccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCc
Q 045877 427 NFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMK 506 (801)
Q Consensus 427 ~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~ 506 (801)
.+||+++.+........... .+..+.+....+.... .......+|+.|||++|.++. ..+...+..++
T Consensus 4 ~lDLs~~~l~~~~l~~l~~~-~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~----------~~l~~l~~~c~ 71 (284)
T d2astb2 4 TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEV----------STLHGILSQCS 71 (284)
T ss_dssp EEECTTCBCCHHHHHHHHHT-TCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECH----------HHHHHHHTTBC
T ss_pred EEECCCCCCCchHHHHHHhc-cceEeeccccccccch-hhhccCCCCCEEECCCCccCH----------HHHHHHHHhCC
Confidence 56777777643322222111 2233333333332221 122345689999999998742 34566678999
Q ss_pred CCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCC--CcccccCCCCCCEEcccCCcccc--CCCcccCC-CCccc
Q 045877 507 ELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDK--LPDEIGKLKSLTHLDISECFLLD--GIPKKLSL-LSKLQ 581 (801)
Q Consensus 507 ~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~--lp~~~~~L~~L~~L~Ls~n~l~~--~~p~~~~~-L~~L~ 581 (801)
+|++|+|++|.+....+..++.+++|++|+|++|..++. +..-+..+++|++|++++|.... .+...+.. .++|+
T Consensus 72 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~ 151 (284)
T d2astb2 72 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 151 (284)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccc
Confidence 999999999977777778899999999999999865442 22234568999999999874321 11111222 24555
Q ss_pred ccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccc-ccccccChhhhhcccCCcEEEeecc
Q 045877 582 VLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININS-EKFQTENLSTVLAFKRLLQLKVSWG 647 (801)
Q Consensus 582 ~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~-~~~~~~~~~~l~~l~~L~~L~L~~n 647 (801)
.|+ +++... .+........+.++++|++|++++|. ++... ...+..+++|++|+|++|
T Consensus 152 ~L~---l~~~~~---~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~--~~~l~~~~~L~~L~L~~C 210 (284)
T d2astb2 152 QLN---LSGYRK---NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRC 210 (284)
T ss_dssp EEE---CCSCGG---GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTC
T ss_pred hhh---hccccc---ccccccccccccccccccccccccccCCCchh--hhhhcccCcCCEEECCCC
Confidence 555 332210 00001111223455666666666643 33222 455566666666666654
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.29 E-value=2.2e-14 Score=147.40 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=88.9
Q ss_pred CCCcceeecCcchhhHhhhhccceeeCCCCChhH---HHHHHHHhhhcccccccccccchhhhhHHHHHhhhccCCccch
Q 045877 91 ISSSEQIKKNEEKDASEADQSVQVHPLNQLDHDL---IYMQYALKRLKGFEGTFGKSIQDLKDDLELVLTSQATGSKSVQ 167 (801)
Q Consensus 91 ~~s~~~vttr~~~~~~~~~~~~~~~~l~~l~~~~---lf~~~af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (801)
.+++++||||.+.++..+....++|+|++|+.+| ||..+||....
T Consensus 156 ~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-------------------------------- 203 (277)
T d2a5yb3 156 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-------------------------------- 203 (277)
T ss_dssp TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---------------------------------
T ss_pred cCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccC--------------------------------
Confidence 5789999999999999877556899999999999 88777665333
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCCc---ccCCCCCchhHHhhhccCCCCCCCCccccccccchhHHHHHHhhhccC-CC
Q 045877 168 EVETLQDEIRRISQKFLNLKSKIPPV---NSSSSDDSDAQQRRRINQSKDLPNMADKTRFKEHDFFIEFKKIFQSLG-ND 243 (801)
Q Consensus 168 ~~~~~~~~~~~~~~~i~~kc~GlPla---i~~~l~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~i~~~L~~SYd~L~-~~ 243 (801)
+++.++++++|+++|+|+||| +|+.+..++.++|..+.+..+..+. .+|..+|++||++|| ++
T Consensus 204 -----~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~--------~~v~~il~~sY~~L~~~l 270 (277)
T d2a5yb3 204 -----GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL--------VGVECITPYSYKSLAMAL 270 (277)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS--------STTCCCSSSSSSSHHHHH
T ss_pred -----chhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccHHH
Confidence 244678999999999999999 4566666888899875443221111 348889999999999 99
Q ss_pred ccccce
Q 045877 244 QSCLLC 249 (801)
Q Consensus 244 K~cFl~ 249 (801)
|+||-+
T Consensus 271 k~c~~~ 276 (277)
T d2a5yb3 271 QRCVEV 276 (277)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999965
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.4e-14 Score=159.87 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=62.6
Q ss_pred ccccccccchhhcchh-hhhhccccCceeeecCCcccCCC----ChhhhccCCCCCEEEcCCcccCCCCCCcccccchhh
Q 045877 424 KLFNFSLSLEEIENKA-KDCAMKRGRIETLFNVSEEFPEF----KYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDY 498 (801)
Q Consensus 424 ~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~L~l~~n~i~~~----~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 498 (801)
+|+.||+++|+|+... ...+..++++++|.+.++.+... ....+..+++|+.|||++|.++... ...+
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~-------~~~l 75 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG-------VHCV 75 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH-------HHHH
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHH-------HHHH
Confidence 4666777777776543 33345566677777777665431 1234566777777777777663110 0122
Q ss_pred hHhhcC-CcCCceEeecCCCCCcc----CchhhcCCCCCCEEeccCCC
Q 045877 499 LKGLKN-MKELRLLSLQGMSGIQE----LPSEISYLTSLEILDLRACY 541 (801)
Q Consensus 499 p~~l~~-l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~Ls~n~ 541 (801)
...+.. ..+|++|+|++|.+... ++..+..+++|++|+|++|.
T Consensus 76 ~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 76 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence 223322 24577777777654322 34456667777777777764
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.2e-12 Score=119.76 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=78.9
Q ss_pred cccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch
Q 045877 445 KRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS 524 (801)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~ 524 (801)
+..+++.|++.+|.|..++ ..+..+++|++|+|++|.++ .+ +.|..+++|++|+|++|.+....+.
T Consensus 16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~------------~l-~~~~~l~~L~~L~ls~N~i~~l~~~ 81 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIR------------KL-DGFPLLRRLKTLLVNNNRICRIGEG 81 (162)
T ss_dssp CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCC------------EE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCC------------cc-CCcccCcchhhhhcccccccCCCcc
Confidence 4556677777777777663 45667777888888888773 22 2467777888888887754433334
Q ss_pred hhcCCCCCCEEeccCCCCCCCCc--ccccCCCCCCEEcccCCccccCCCc----ccCCCCcccccc
Q 045877 525 EISYLTSLEILDLRACYNLDKLP--DEIGKLKSLTHLDISECFLLDGIPK----KLSLLSKLQVLK 584 (801)
Q Consensus 525 ~i~~L~~L~~L~Ls~n~~~~~lp--~~~~~L~~L~~L~Ls~n~l~~~~p~----~~~~L~~L~~L~ 584 (801)
.+..+++|++|+|++|.+.. ++ ..+..+++|++|++++|.+.. .|. .+..+++|++|+
T Consensus 82 ~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 82 LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred ccccccccccceeccccccc-cccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence 45667788888888775433 33 346677778888888777542 221 244555555555
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=5.1e-12 Score=130.22 Aligned_cols=208 Identities=17% Similarity=0.122 Sum_probs=135.1
Q ss_pred hccccccccccchhhcch-hhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcc-cCCCCCCcccccchhh
Q 045877 421 KIKKLFNFSLSLEEIENK-AKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQ-STVDDIPHIEIESTDY 498 (801)
Q Consensus 421 ~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l 498 (801)
...+|++|||+++.++.. ....+..+++|+.|.+.++.+.......+..+++|+.|+|++|. ++ ...+
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~it----------d~~l 113 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS----------EFAL 113 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC----------HHHH
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccc----------cccc
Confidence 345788999999888754 45567788899999988887776666778888899999998864 32 1234
Q ss_pred hHhhcCCcCCceEeecCCCCCcc--CchhhcC-CCCCCEEeccCCCC-CC--CCcccccCCCCCCEEcccCCc-cccCCC
Q 045877 499 LKGLKNMKELRLLSLQGMSGIQE--LPSEISY-LTSLEILDLRACYN-LD--KLPDEIGKLKSLTHLDISECF-LLDGIP 571 (801)
Q Consensus 499 p~~l~~l~~L~~L~Ls~n~~~~~--lp~~i~~-L~~L~~L~Ls~n~~-~~--~lp~~~~~L~~L~~L~Ls~n~-l~~~~p 571 (801)
...+..+++|++|+|++|..+.. +...+.. .++|+.|++++|.. +. .+...+.++++|++|++++|. ++....
T Consensus 114 ~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~ 193 (284)
T d2astb2 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193 (284)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred chhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh
Confidence 44456788999999998755432 2233433 46899999987621 11 122334567889999998875 454555
Q ss_pred cccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccChhh-hhcccCCcEEEeeccCCC
Q 045877 572 KKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTENLST-VLAFKRLLQLKVSWGGGS 650 (801)
Q Consensus 572 ~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~~~~-l~~l~~L~~L~L~~n~l~ 650 (801)
..+..+++|++|+ ++++.. + ....+..++++++|+.|+++++ +.... ... ...+++|+ +..+.++
T Consensus 194 ~~l~~~~~L~~L~---L~~C~~----i-~~~~l~~L~~~~~L~~L~l~~~-~~d~~--l~~l~~~lp~L~---i~~~~ls 259 (284)
T d2astb2 194 QEFFQLNYLQHLS---LSRCYD----I-IPETLLELGEIPTLKTLQVFGI-VPDGT--LQLLKEALPHLQ---INCSHFT 259 (284)
T ss_dssp GGGGGCTTCCEEE---CTTCTT----C-CGGGGGGGGGCTTCCEEECTTS-SCTTC--HHHHHHHSTTSE---ESCCCSC
T ss_pred hhhcccCcCCEEE---CCCCCC----C-ChHHHHHHhcCCCCCEEeeeCC-CCHHH--HHHHHHhCcccc---ccCccCC
Confidence 6677888888888 655320 0 1123445777888888888877 22211 222 23455544 5556665
Q ss_pred CC
Q 045877 651 AN 652 (801)
Q Consensus 651 ~~ 652 (801)
..
T Consensus 260 ~~ 261 (284)
T d2astb2 260 TI 261 (284)
T ss_dssp CT
T ss_pred CC
Confidence 44
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.3e-11 Score=109.82 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=57.3
Q ss_pred eeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCC
Q 045877 451 TLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLT 530 (801)
Q Consensus 451 ~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~ 530 (801)
.|++.+|.+..+. .+.++++|+.|+|++|.++ .+|..+..+++|++|++++|. +..+|. ++.++
T Consensus 2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~------------~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~ 65 (124)
T d1dcea3 2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR------------ALPPALAALRCLEVLQASDNA-LENVDG-VANLP 65 (124)
T ss_dssp EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC------------CCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred EEEcCCCCCCCCc--ccccCCCCCEEECCCCccC------------cchhhhhhhhccccccccccc-ccccCc-ccccc
Confidence 3444445554442 2556666666666666663 344556666666666666653 334443 66666
Q ss_pred CCCEEeccCCCCCCCC-cccccCCCCCCEEcccCCccc
Q 045877 531 SLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 531 ~L~~L~Ls~n~~~~~l-p~~~~~L~~L~~L~Ls~n~l~ 567 (801)
+|++|++++|.+...- ...++.+++|++|++++|.+.
T Consensus 66 ~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 66 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 6666666666443221 134566666666666666654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.3e-12 Score=118.82 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=85.0
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL 546 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l 546 (801)
|.++.+||.|+|++|+++. ++..+..+.+|++|+|++|. +..++ .+..+++|++|++++|.+....
T Consensus 14 ~~n~~~lr~L~L~~n~I~~------------i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~i~~l~ 79 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV------------IENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNRICRIG 79 (162)
T ss_dssp EECTTSCEEEECTTSCCCS------------CCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSCCCEEC
T ss_pred ccCcCcCcEEECCCCCCCc------------cCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhcccccccCCC
Confidence 5677788888888888843 34445677888888888874 44554 4778888888888888665544
Q ss_pred cccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccccc
Q 045877 547 PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQ 626 (801)
Q Consensus 547 p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~ 626 (801)
+..+..+++|++|++++|++.. ++. ...+..+++|++|++++|.+...
T Consensus 80 ~~~~~~l~~L~~L~L~~N~i~~-~~~-------------------------------l~~l~~l~~L~~L~l~~N~i~~~ 127 (162)
T d1a9na_ 80 EGLDQALPDLTELILTNNSLVE-LGD-------------------------------LDPLASLKSLTYLCILRNPVTNK 127 (162)
T ss_dssp SCHHHHCTTCCEEECCSCCCCC-GGG-------------------------------GGGGGGCTTCCEEECCSSGGGGS
T ss_pred ccccccccccccceeccccccc-ccc-------------------------------ccccccccccchhhcCCCccccc
Confidence 4445678888888888887542 111 12344556666666666665443
Q ss_pred ccC-hhhhhcccCCcEEE
Q 045877 627 TEN-LSTVLAFKRLLQLK 643 (801)
Q Consensus 627 ~~~-~~~l~~l~~L~~L~ 643 (801)
... ...+..+++|+.||
T Consensus 128 ~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 128 KHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp TTHHHHHHHHCTTCSEET
T ss_pred cchHHHHHHHCCCcCeeC
Confidence 210 12456666777665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=2.7e-11 Score=107.80 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=77.4
Q ss_pred CEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCCcccccCC
Q 045877 474 KVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKLPDEIGKL 553 (801)
Q Consensus 474 ~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L 553 (801)
|+|+|++|+++. ++ .+..+.+|++|++++|. +..+|..++.+++|++|++++|.+. .+| .++.+
T Consensus 1 R~L~Ls~n~l~~------------l~-~l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l 64 (124)
T d1dcea3 1 RVLHLAHKDLTV------------LC-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE-NVD-GVANL 64 (124)
T ss_dssp SEEECTTSCCSS------------CC-CGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTC
T ss_pred CEEEcCCCCCCC------------Cc-ccccCCCCCEEECCCCc-cCcchhhhhhhhccccccccccccc-ccC-ccccc
Confidence 678888888742 22 36777888888888874 4567777888888888888887544 444 47778
Q ss_pred CCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccccccccC-hhh
Q 045877 554 KSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEKFQTEN-LST 632 (801)
Q Consensus 554 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~~~~~~-~~~ 632 (801)
++|++|++++|++... + .+..++.+++|+.|++++|.+...... ...
T Consensus 65 ~~L~~L~l~~N~i~~~-~-------------------------------~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l 112 (124)
T d1dcea3 65 PRLQELLLCNNRLQQS-A-------------------------------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112 (124)
T ss_dssp SSCCEEECCSSCCCSS-S-------------------------------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHH
T ss_pred cccCeEECCCCccCCC-C-------------------------------CchhhcCCCCCCEEECCCCcCCcCccHHHHH
Confidence 8888888888765421 1 112344566667777777666543322 223
Q ss_pred hhcccCCcEE
Q 045877 633 VLAFKRLLQL 642 (801)
Q Consensus 633 l~~l~~L~~L 642 (801)
+..+++|+.|
T Consensus 113 ~~~lp~L~~L 122 (124)
T d1dcea3 113 AEMLPSVSSI 122 (124)
T ss_dssp HHHCTTCSEE
T ss_pred HHHCcCcceE
Confidence 4445666554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.2e-13 Score=150.08 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=84.8
Q ss_pred CceeeecCCcccCCCC-hhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----C
Q 045877 448 RIETLFNVSEEFPEFK-YDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----L 522 (801)
Q Consensus 448 ~L~~L~l~~n~i~~~~-~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----l 522 (801)
+|+.|++..|++.... ...+..+++|++|+|++|.++... ...+...+..+++|++|+|++|.+... +
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~-------~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l 75 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-------CKDISSALRVNPALAELNLRSNELGDVGVHCV 75 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH-------HHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHH-------HHHHHHHHhcCCCCCEEECcCCcCChHHHHHH
Confidence 5788999999997743 455788999999999999885211 135667788999999999999854321 2
Q ss_pred chhhc-CCCCCCEEeccCCCCCCC----CcccccCCCCCCEEcccCCccc
Q 045877 523 PSEIS-YLTSLEILDLRACYNLDK----LPDEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 523 p~~i~-~L~~L~~L~Ls~n~~~~~----lp~~~~~L~~L~~L~Ls~n~l~ 567 (801)
...+. ...+|++|+|++|.+... ++..+..+++|++|++++|.+.
T Consensus 76 ~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 76 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 22232 235899999999976432 4566788999999999999864
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.14 E-value=4.8e-12 Score=134.36 Aligned_cols=257 Identities=14% Similarity=0.017 Sum_probs=128.0
Q ss_pred hhhhhhhccccccccccchhhcchhhh----hhccccCceeeecCCcccCCCC----------hhhhccCCCCCEEEcCC
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKD----CAMKRGRIETLFNVSEEFPEFK----------YDWFSKLEKIKVLYLGR 480 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~~~L~~L~l~~n~i~~~~----------~~~f~~l~~L~~L~Ls~ 480 (801)
....+.+..+|+.|+|++|.|...... .+...++|+.+.+..+.+.... ...+..+++|+.|+|++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 345567788888999998888654333 3344556666665544322211 12234455666666666
Q ss_pred cccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch-------------hhcCCCCCCEEeccCCCCCCC--
Q 045877 481 WQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS-------------EISYLTSLEILDLRACYNLDK-- 545 (801)
Q Consensus 481 n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~-------------~i~~L~~L~~L~Ls~n~~~~~-- 545 (801)
|.+.... ...+...+..+++|++|++++|.+...-.. .......|+.|++++|.+...
T Consensus 103 n~i~~~~-------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~ 175 (344)
T d2ca6a1 103 NAFGPTA-------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 175 (344)
T ss_dssp CCCCTTT-------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred ccccccc-------ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc
Confidence 6553321 123344445556666666666533111000 012344555555555533211
Q ss_pred --CcccccCCCCCCEEcccCCccccCCCcccCCCCcccccccccccCCcchhhhhhcccCcccccCCccCCeeEeecccc
Q 045877 546 --LPDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQVLKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSE 623 (801)
Q Consensus 546 --lp~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~ 623 (801)
+...+.....|+.|++++|.+... ++ .......+..+++|+.|+|++|.+
T Consensus 176 ~~l~~~l~~~~~L~~L~L~~n~i~~~---------------------------g~-~~~l~~~l~~~~~L~~L~Ls~N~i 227 (344)
T d2ca6a1 176 KEWAKTFQSHRLLHTVKMVQNGIRPE---------------------------GI-EHLLLEGLAYCQELKVLDLQDNTF 227 (344)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHH---------------------------HH-HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred ccccchhhhhhhhccccccccccccc---------------------------cc-ccchhhhhcchhhhcccccccccc
Confidence 122233444555555555543210 00 000122345566777777777766
Q ss_pred cccc--cChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhcccccccccccccCCCccEEEccCCCCC
Q 045877 624 KFQT--ENLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFRTRVTERSQHVESKLEKLDFQCFPDE 701 (801)
Q Consensus 624 ~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~L~~L~L~~n~~~ 701 (801)
.... .....+..+++|++|+|++|.+++... ..+ ...+.......|+.|+|++|.++
T Consensus 228 ~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~---------------~~l------~~~l~~~~~~~L~~L~ls~N~i~ 286 (344)
T d2ca6a1 228 THLGSSALAIALKSWPNLRELGLNDCLLSARGA---------------AAV------VDAFSKLENIGLQTLRLQYNEIE 286 (344)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH---------------HHH------HHHHHTCSSCCCCEEECCSSCCB
T ss_pred cccccccccccccccccchhhhhhcCccCchhh---------------HHH------HHHhhhccCCCCCEEECCCCcCC
Confidence 4332 113445666777777777776653210 000 00000001246777777777653
Q ss_pred C-----CCcccCCCCCCCccEEEeeCCcCCCC
Q 045877 702 K-----LPSWVHPYSFKNLKNLYIRGGRLNSL 728 (801)
Q Consensus 702 ~-----lp~~l~~~~l~~L~~L~L~~n~l~~~ 728 (801)
. +...+. .++++|++|+|++|.+...
T Consensus 287 ~~~~~~l~~~l~-~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 287 LDAVRTLKTVID-EKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp HHHHHHHHHHHH-HHCTTCCEEECTTSBSCTT
T ss_pred hHHHHHHHHHHH-ccCCCCCEEECCCCcCCCc
Confidence 2 444442 2466788888888887654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.09 E-value=4.9e-12 Score=134.29 Aligned_cols=254 Identities=13% Similarity=0.014 Sum_probs=136.0
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCc---c-------CchhhcCCCCCCEEe
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQ---E-------LPSEISYLTSLEILD 536 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~---~-------lp~~i~~L~~L~~L~ 536 (801)
+.....|+.|+|++|.+.... ...+...+...++|+.|+++++.... . +...+..+++|+.|+
T Consensus 27 L~~~~~l~~L~Ls~n~i~~~~-------~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~ 99 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNTIGTEA-------ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 99 (344)
T ss_dssp HHHCSCCCEEECTTSEECHHH-------HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HhhCCCCCEEECcCCcCCHHH-------HHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence 445556666666666552110 01233445556666666666542110 1 112334556666666
Q ss_pred ccCCCCCCC----CcccccCCCCCCEEcccCCccccCCC----c---------ccCCCCcccccccccccCCcchhhhhh
Q 045877 537 LRACYNLDK----LPDEIGKLKSLTHLDISECFLLDGIP----K---------KLSLLSKLQVLKGFVISDHAEDDRRWK 599 (801)
Q Consensus 537 Ls~n~~~~~----lp~~~~~L~~L~~L~Ls~n~l~~~~p----~---------~~~~L~~L~~L~~~~l~~n~~~~~~~~ 599 (801)
|++|.+... +...+...++|++|++++|.+...-. . .......|+.|. ++.+......
T Consensus 100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~---l~~n~i~~~~-- 174 (344)
T d2ca6a1 100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII---CGRNRLENGS-- 174 (344)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE---CCSSCCTGGG--
T ss_pred ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceee---cccccccccc--
Confidence 666644332 22233445666666666665421100 0 012334555555 5554411100
Q ss_pred cccCcccccCCccCCeeEeecccccccc--c-ChhhhhcccCCcEEEeeccCCCCCCCCCCCCCCCccchhchhhhhccc
Q 045877 600 RWCSLKDLEKLEHLRKLTININSEKFQT--E-NLSTVLAFKRLLQLKVSWGGGSANKSTKPEPQTGRKDNFFIKTLTKFR 676 (801)
Q Consensus 600 ~~~~~~~l~~L~~L~~L~L~~n~~~~~~--~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~l~~L~~~~ 676 (801)
...+...+..+..|+.|+|++|.+.... . ....+..+++|+.|+|++|.++.. ....+
T Consensus 175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~---------------g~~~L---- 235 (344)
T d2ca6a1 175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---------------GSSAL---- 235 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---------------HHHHH----
T ss_pred cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccc---------------ccccc----
Confidence 0112234567788999999999886432 0 134467889999999999976421 11111
Q ss_pred ccccccccccCCCccEEEccCCCCCCC-----CcccCCCCCCCccEEEeeCCcCCCCCCCcccccceecccccccccccc
Q 045877 677 TRVTERSQHVESKLEKLDFQCFPDEKL-----PSWVHPYSFKNLKNLYIRGGRLNSLEGSEWETVKVLRLKYLNELKIDW 751 (801)
Q Consensus 677 ~~l~~~~~~~~~~L~~L~L~~n~~~~l-----p~~l~~~~l~~L~~L~L~~n~l~~~~~~~f~~L~~l~L~~L~~L~l~~ 751 (801)
...... .++|++|+|++|.++.. -..+.....+.|++|+|++|.|.......+.+.-.-..+.|+.|++++
T Consensus 236 ---~~~l~~-~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~ 311 (344)
T d2ca6a1 236 ---AIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311 (344)
T ss_dssp ---HHHGGG-CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ---cccccc-cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence 111111 36899999999976531 111111134789999999998765432222111011356788889999
Q ss_pred cccc
Q 045877 752 KGLQ 755 (801)
Q Consensus 752 n~l~ 755 (801)
|.+.
T Consensus 312 N~~~ 315 (344)
T d2ca6a1 312 NRFS 315 (344)
T ss_dssp SBSC
T ss_pred CcCC
Confidence 9886
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.98 E-value=7.7e-12 Score=121.31 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=60.7
Q ss_pred hhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc
Q 045877 442 CAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE 521 (801)
Q Consensus 442 ~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~ 521 (801)
.+..+.+|+.|.+.+|.|..+. .|.++++|++|+|++|.++. ++..+..+.+|++|++++|.+ ..
T Consensus 43 sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~------------i~~~~~~~~~L~~L~l~~N~i-~~ 107 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK------------IENLDAVADTLEELWISYNQI-AS 107 (198)
T ss_dssp HHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECS------------CSSHHHHHHHCCEEECSEEEC-CC
T ss_pred HHhcccccceeECcccCCCCcc--cccCCccccChhhccccccc------------ccccccccccccccccccccc-cc
Confidence 3444555566666666655543 25666666666666666632 222233344566666666533 33
Q ss_pred CchhhcCCCCCCEEeccCCCCCCCCc--ccccCCCCCCEEcccCCccc
Q 045877 522 LPSEISYLTSLEILDLRACYNLDKLP--DEIGKLKSLTHLDISECFLL 567 (801)
Q Consensus 522 lp~~i~~L~~L~~L~Ls~n~~~~~lp--~~~~~L~~L~~L~Ls~n~l~ 567 (801)
++ .+..+++|++|+|++|.+. .++ ..+..+++|++|++++|.+.
T Consensus 108 l~-~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 108 LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred cc-cccccccccccccccchhc-cccccccccCCCccceeecCCCccc
Confidence 33 3566666666666666433 222 34566666777777666554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.94 E-value=2e-11 Score=118.27 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=93.3
Q ss_pred hhhhhhhccccccccccchhhcchhhhhhccccCceeeecCCcccCCCChhhhccCCCCCEEEcCCcccCCCCCCccccc
Q 045877 415 KAVEFEKIKKLFNFSLSLEEIENKAKDCAMKRGRIETLFNVSEEFPEFKYDWFSKLEKIKVLYLGRWQSTVDDIPHIEIE 494 (801)
Q Consensus 415 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 494 (801)
...++..|++|++|+|++|+|+.+. .+..+++|+.|++.+|.+..++ ..+..++.|++|++++|.++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~---------- 106 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIA---------- 106 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECC----------
T ss_pred hhhHHhcccccceeECcccCCCCcc--cccCCccccChhhccccccccc-cccccccccccccccccccc----------
Confidence 3467899999999999999999763 4788999999999999998764 45566778999999999984
Q ss_pred chhhhHhhcCCcCCceEeecCCCCCccCc--hhhcCCCCCCEEeccCCCCCC
Q 045877 495 STDYLKGLKNMKELRLLSLQGMSGIQELP--SEISYLTSLEILDLRACYNLD 544 (801)
Q Consensus 495 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp--~~i~~L~~L~~L~Ls~n~~~~ 544 (801)
.+ ..+..+++|++|+|++|.+ ..++ ..+..+++|++|+|++|.+..
T Consensus 107 --~l-~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 107 --SL-SGIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp --CH-HHHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred --cc-ccccccccccccccccchh-ccccccccccCCCccceeecCCCcccc
Confidence 23 4578899999999999854 4554 468999999999999986543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.2e-09 Score=99.29 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=28.3
Q ss_pred HhhcCCcCCceEeecCCCCCccCc-hhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCcc
Q 045877 500 KGLKNMKELRLLSLQGMSGIQELP-SEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFL 566 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n~~~~~lp-~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l 566 (801)
..+..+++|++|+|++|+.+..++ ..|.++++|+.|+|++|++....+..|..+++|++|+|++|++
T Consensus 25 ~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l 92 (156)
T d2ifga3 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (156)
T ss_dssp TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence 334444444444444333222222 3344444444444444433333334444444444444444443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=5e-08 Score=89.83 Aligned_cols=110 Identities=17% Similarity=0.061 Sum_probs=71.6
Q ss_pred CCcCCceEeecCCCCCccCchhhcCCCCCCEEeccCCCCCCCC-cccccCCCCCCEEcccCCccccCCCcccCCCCcccc
Q 045877 504 NMKELRLLSLQGMSGIQELPSEISYLTSLEILDLRACYNLDKL-PDEIGKLKSLTHLDISECFLLDGIPKKLSLLSKLQV 582 (801)
Q Consensus 504 ~l~~L~~L~Ls~n~~~~~lp~~i~~L~~L~~L~Ls~n~~~~~l-p~~~~~L~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~ 582 (801)
.+.....++.+++ .....|..+..+++|+.|++++|+.+..+ +..|.++++|+.|+|++|++...-+..|..+++|++
T Consensus 6 ~c~~~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 6 CPHGSSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp CCSSSSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CcCCCCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence 3444566777775 44556777888888888888776544444 456888888888888888877655666666666666
Q ss_pred cccccccCCcchhhhhhcccCcccccCCccCCeeEeeccccc
Q 045877 583 LKGFVISDHAEDDRRWKRWCSLKDLEKLEHLRKLTININSEK 624 (801)
Q Consensus 583 L~~~~l~~n~~~~~~~~~~~~~~~l~~L~~L~~L~L~~n~~~ 624 (801)
|+ +++|. +..++.......+|+.|+|++|.+.
T Consensus 85 L~---Ls~N~-------l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 85 LN---LSFNA-------LESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp EE---CCSSC-------CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ee---ccCCC-------CcccChhhhccccccccccCCCccc
Confidence 66 66666 3344433333334666666666553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=6.4e-07 Score=82.79 Aligned_cols=83 Identities=22% Similarity=0.087 Sum_probs=42.3
Q ss_pred hcCCcCCceEeecCCCCCcc--CchhhcCCCCCCEEeccCCCCCCCCcccccCCCCCCEEcccCCccccCCCc-------
Q 045877 502 LKNMKELRLLSLQGMSGIQE--LPSEISYLTSLEILDLRACYNLDKLPDEIGKLKSLTHLDISECFLLDGIPK------- 572 (801)
Q Consensus 502 l~~l~~L~~L~Ls~n~~~~~--lp~~i~~L~~L~~L~Ls~n~~~~~lp~~~~~L~~L~~L~Ls~n~l~~~~p~------- 572 (801)
+..+++|++|+|++|.+... ++..+..+++|++|+|++|.+...-+-...+..+|+.|++++|.+......
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~ 140 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence 34556666666666543321 233455566666666666643332221223334566666666665543321
Q ss_pred ccCCCCcccccc
Q 045877 573 KLSLLSKLQVLK 584 (801)
Q Consensus 573 ~~~~L~~L~~L~ 584 (801)
.+..+++|+.|+
T Consensus 141 i~~~~P~L~~LD 152 (162)
T d1koha1 141 IRERFPKLLRLD 152 (162)
T ss_dssp HHTTSTTCCEET
T ss_pred HHHHCCCCCEEC
Confidence 144556666655
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=4.9e-07 Score=83.59 Aligned_cols=87 Identities=20% Similarity=0.116 Sum_probs=60.0
Q ss_pred hhhhccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCccCch-hhcCCCCCCEEeccCCCC
Q 045877 464 YDWFSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQELPS-EISYLTSLEILDLRACYN 542 (801)
Q Consensus 464 ~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~-~i~~L~~L~~L~Ls~n~~ 542 (801)
...+..++.|++|+|++|+++... .++..+..+++|++|+|++|. +..++. ......+|+.|++++|.+
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~---------~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl 127 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLD---------DMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSL 127 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCS---------GGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred HHHHHhCCCCCEeeCCCccccCCc---------hhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCc
Confidence 445667888888888888886432 345566778888888888874 444443 333455788888888876
Q ss_pred CCCCcc-------cccCCCCCCEEc
Q 045877 543 LDKLPD-------EIGKLKSLTHLD 560 (801)
Q Consensus 543 ~~~lp~-------~~~~L~~L~~L~ 560 (801)
...... .+..+++|++||
T Consensus 128 ~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 128 SDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp SSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred CcCcccchhHHHHHHHHCCCCCEEC
Confidence 654432 256688888887
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.91 E-value=0.00037 Score=63.83 Aligned_cols=92 Identities=14% Similarity=0.051 Sum_probs=53.4
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----CchhhcCCCCCCEEeccCCCC
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----LPSEISYLTSLEILDLRACYN 542 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~Ls~n~~ 542 (801)
+...+.|+.|+|++|.+.... ...+...+...+.|++|+|++|.+... +-..+..-+.|++|+|++|..
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~-------~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSE-------ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHH-------HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred HhhCCccceeeccccccchhH-------HHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence 445566777777777663211 123445556667777777777754332 223455567778888877643
Q ss_pred CCC-------CcccccCCCCCCEEcccCCc
Q 045877 543 LDK-------LPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 543 ~~~-------lp~~~~~L~~L~~L~Ls~n~ 565 (801)
... +...+..-+.|+.|+++.+.
T Consensus 113 ~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 113 SVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 211 22334445677888777654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.76 E-value=0.00048 Score=63.03 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=35.2
Q ss_pred hhHhhcCCcCCceEeecCCCCCc----cCchhhcCCCCCCEEeccCCCCCCC----CcccccCCCCCCEEcccCCc
Q 045877 498 YLKGLKNMKELRLLSLQGMSGIQ----ELPSEISYLTSLEILDLRACYNLDK----LPDEIGKLKSLTHLDISECF 565 (801)
Q Consensus 498 lp~~l~~l~~L~~L~Ls~n~~~~----~lp~~i~~L~~L~~L~Ls~n~~~~~----lp~~~~~L~~L~~L~Ls~n~ 565 (801)
+...+....+|++|+|++|.+.. .+...+...+.|++|+|++|.+... +-..+..-+.|++|++++|.
T Consensus 36 l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 36 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 34455556666666666664432 1223344456666666666643321 11234445556666666654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.87 E-value=0.0017 Score=59.02 Aligned_cols=91 Identities=14% Similarity=0.009 Sum_probs=44.4
Q ss_pred hccCCCCCEEEcCCcccCCCCCCcccccchhhhHhhcCCcCCceEeecCCCCCcc----CchhhcCCCCCCEEeccC--C
Q 045877 467 FSKLEKIKVLYLGRWQSTVDDIPHIEIESTDYLKGLKNMKELRLLSLQGMSGIQE----LPSEISYLTSLEILDLRA--C 540 (801)
Q Consensus 467 f~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~i~~L~~L~~L~Ls~--n 540 (801)
+...++|+.|+|++|.++... ...+-..+....+|++|++++|.+... +-..+...+.|+.++|+. |
T Consensus 42 l~~n~~L~~L~Ls~n~l~~~~-------~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n 114 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTRSNDPV-------AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ 114 (166)
T ss_dssp HTTCCSCCEEECTTSCCCHHH-------HHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HhcCCccCeeeccCCcccHHH-------HHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCC
Confidence 345566666777766653211 122334455566666666666543322 223445556666555542 2
Q ss_pred CCCC----CCcccccCCCCCCEEcccCC
Q 045877 541 YNLD----KLPDEIGKLKSLTHLDISEC 564 (801)
Q Consensus 541 ~~~~----~lp~~~~~L~~L~~L~Ls~n 564 (801)
.+.. .+...+...++|++|+++.+
T Consensus 115 ~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 115 PLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 2211 12223444556666666544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.45 E-value=0.0022 Score=58.23 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=8.4
Q ss_pred HhhcCCcCCceEeecCC
Q 045877 500 KGLKNMKELRLLSLQGM 516 (801)
Q Consensus 500 ~~l~~l~~L~~L~Ls~n 516 (801)
..+...++|++|+|++|
T Consensus 40 ~al~~n~~L~~L~Ls~n 56 (166)
T d1io0a_ 40 EALKTNTYVKKFSIVGT 56 (166)
T ss_dssp HHHTTCCSCCEEECTTS
T ss_pred HHHhcCCccCeeeccCC
Confidence 33444455555555554
|