Citrus Sinensis ID: 045879

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ
cccccccccccccccccccHHHccccccccccHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccc
cccccccccccccccccccHHHHHHccHHccccHHHHHHHHHHHHccHHHEEEEEEccccHHHHHHHHHHHHcccccccccccccccccccHHHcc
lrkhlssedhpyhkfstgnwetlevrpkakgldtRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRntdrnlfrfpgqpctsehlq
lrkhlssedhpyhkfstgnwetlevRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDrnlfrfpgqpctsehlq
LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ
*****************GNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRF***********
LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSE***
***********YHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRFPGQ********
*****SSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRFPGQPCT*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query96 2.2.26 [Sep-21-2011]
O22941 970 Zinc-metallopeptidase, pe yes no 1.0 0.098 0.739 4e-38
P14735 1019 Insulin-degrading enzyme yes no 1.0 0.094 0.437 5e-17
Q24K02 1019 Insulin-degrading enzyme yes no 1.0 0.094 0.437 6e-17
P35559 1019 Insulin-degrading enzyme yes no 1.0 0.094 0.437 6e-17
Q9JHR7 1019 Insulin-degrading enzyme yes no 1.0 0.094 0.437 7e-17
P22817 990 Insulin-degrading enzyme yes no 0.968 0.093 0.419 8e-16
Q06010 1027 A-factor-processing enzym yes no 1.0 0.093 0.427 1e-15
O14077 969 Putative zinc protease mu yes no 0.958 0.094 0.402 1e-13
Q10040 856 Putative zinc protease C2 yes no 0.812 0.091 0.379 2e-08
Q8BHG1 1161 Nardilysin OS=Mus musculu no no 0.760 0.062 0.410 1e-07
>sp|O22941|PXM16_ARATH Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1 Back     alignment and function desciption
 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/96 (73%), Positives = 85/96 (88%)

Query: 1   LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
           L+KHLS EDHPYHKFSTGN +TL VRP+AKG+DTR ELIKFY EHYS+N+MHLVVY KES
Sbjct: 165 LQKHLSKEDHPYHKFSTGNMDTLHVRPQAKGVDTRSELIKFYEEHYSANIMHLVVYGKES 224

Query: 61  VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
           +DKIQ LVE  FQ+I+NT++ + RFPGQPCT++HLQ
Sbjct: 225 LDKIQDLVERMFQEIQNTNKVVPRFPGQPCTADHLQ 260
Peptidase that might be involved in pathogen or wound response. Not required for peroxisome biogenesis, indole-3-butyric acid (IBA) metabolism, fatty acid beta-oxidation or degradation of glyoxylate cycle enzymes during seedling development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|P14735|IDE_HUMAN Insulin-degrading enzyme OS=Homo sapiens GN=IDE PE=1 SV=4 Back     alignment and function description
>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1 Back     alignment and function description
>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1 SV=4 Back     alignment and function description
>sp|Q06010|STE23_YEAST A-factor-processing enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE23 PE=1 SV=2 Back     alignment and function description
>sp|O14077|MU138_SCHPO Putative zinc protease mug138 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug138 PE=1 SV=1 Back     alignment and function description
>sp|Q10040|YQA4_CAEEL Putative zinc protease C28F5.4 OS=Caenorhabditis elegans GN=C28F5.4 PE=3 SV=2 Back     alignment and function description
>sp|Q8BHG1|NRDC_MOUSE Nardilysin OS=Mus musculus GN=Nrd1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query96
225441825 965 PREDICTED: zinc-metallopeptidase, peroxi 1.0 0.099 0.791 4e-40
224087014 949 predicted protein [Populus trichocarpa] 1.0 0.101 0.760 8e-38
255582581 967 Insulin-degrading enzyme, putative [Rici 1.0 0.099 0.75 9e-38
356504785 964 PREDICTED: zinc-metallopeptidase, peroxi 1.0 0.099 0.760 3e-37
356572034 964 PREDICTED: zinc-metallopeptidase, peroxi 1.0 0.099 0.760 3e-37
110741612 970 putative zinc protease [Arabidopsis thal 1.0 0.098 0.739 2e-36
15227435 970 insulysin [Arabidopsis thaliana] gi|7509 1.0 0.098 0.739 2e-36
225441823 965 PREDICTED: zinc-metallopeptidase, peroxi 1.0 0.099 0.770 2e-36
350535204 971 insulin degrading enzyme [Solanum lycope 1.0 0.098 0.718 3e-36
449524422 534 PREDICTED: zinc-metallopeptidase, peroxi 1.0 0.179 0.739 4e-36
>gi|225441825|ref|XP_002283993.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739661|emb|CBI29843.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/96 (79%), Positives = 89/96 (92%)

Query: 1   LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
           L+KH+S+E HPYHKFSTGNW+TLEV+PK KGLDTRHELIKFY EHYS+NLMHLVVY+KES
Sbjct: 158 LQKHISAEGHPYHKFSTGNWDTLEVKPKEKGLDTRHELIKFYEEHYSANLMHLVVYTKES 217

Query: 61  VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
           +DKIQ LVE+KFQ+I+N DR+ F+ PGQPCTSEHLQ
Sbjct: 218 LDKIQSLVEHKFQEIQNKDRSNFQIPGQPCTSEHLQ 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224087014|ref|XP_002308028.1| predicted protein [Populus trichocarpa] gi|222854004|gb|EEE91551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582581|ref|XP_002532073.1| Insulin-degrading enzyme, putative [Ricinus communis] gi|223528255|gb|EEF30307.1| Insulin-degrading enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356504785|ref|XP_003521175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|356572034|ref|XP_003554175.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|110741612|dbj|BAE98754.1| putative zinc protease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15227435|ref|NP_181710.1| insulysin [Arabidopsis thaliana] gi|75097648|sp|O22941.1|PXM16_ARATH RecName: Full=Zinc-metallopeptidase, peroxisomal; AltName: Full=Peroxisomal M16 protease gi|2335108|gb|AAC02769.1| putative zinc protease [Arabidopsis thaliana] gi|330254939|gb|AEC10033.1| insulysin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225441823|ref|XP_002283970.1| PREDICTED: zinc-metallopeptidase, peroxisomal [Vitis vinifera] gi|297739662|emb|CBI29844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|350535204|ref|NP_001233926.1| insulin degrading enzyme [Solanum lycopersicum] gi|15485612|emb|CAC67408.1| insulin degrading enzyme [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449524422|ref|XP_004169222.1| PREDICTED: zinc-metallopeptidase, peroxisomal-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query96
TAIR|locus:2054346 970 AT2G41790 [Arabidopsis thalian 1.0 0.098 0.739 1.3e-35
TAIR|locus:2103523 891 AT3G57470 [Arabidopsis thalian 1.0 0.107 0.718 2.7e-34
UNIPROTKB|F1SC98 990 IDE "Uncharacterized protein" 1.0 0.096 0.437 1.6e-16
UNIPROTKB|F1P6U4 902 IDE "Uncharacterized protein" 1.0 0.106 0.437 2.2e-16
UNIPROTKB|E1BW52 858 Gga.21599 "Uncharacterized pro 1.0 0.111 0.427 2.6e-16
UNIPROTKB|Q24K02 1019 IDE "Insulin-degrading enzyme" 1.0 0.094 0.437 2.7e-16
UNIPROTKB|E2RGZ3 1019 IDE "Uncharacterized protein" 1.0 0.094 0.437 2.7e-16
MGI|MGI:96412 1019 Ide "insulin degrading enzyme" 1.0 0.094 0.437 2.7e-16
RGD|2861 1019 Ide "insulin degrading enzyme" 1.0 0.094 0.437 2.7e-16
UNIPROTKB|E1BTQ0 880 Gga.21599 "Uncharacterized pro 1.0 0.109 0.427 2.7e-16
TAIR|locus:2054346 AT2G41790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 395 (144.1 bits), Expect = 1.3e-35, P = 1.3e-35
 Identities = 71/96 (73%), Positives = 85/96 (88%)

Query:     1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
             L+KHLS EDHPYHKFSTGN +TL VRP+AKG+DTR ELIKFY EHYS+N+MHLVVY KES
Sbjct:   165 LQKHLSKEDHPYHKFSTGNMDTLHVRPQAKGVDTRSELIKFYEEHYSANIMHLVVYGKES 224

Query:    61 VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
             +DKIQ LVE  FQ+I+NT++ + RFPGQPCT++HLQ
Sbjct:   225 LDKIQDLVERMFQEIQNTNKVVPRFPGQPCTADHLQ 260
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2103523 AT3G57470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC98 IDE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6U4 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW52 Gga.21599 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K02 IDE "Insulin-degrading enzyme" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ3 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:96412 Ide "insulin degrading enzyme" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2861 Ide "insulin degrading enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTQ0 Gga.21599 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22941PXM16_ARATH3, ., 4, ., 2, 4, ., -0.73951.00.0989yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025592001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (965 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query96
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 6e-19
PRK15101 961 PRK15101, PRK15101, protease3; Provisional 2e-13
pfam05193 182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 4e-07
COG0612 438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 4e-04
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 79.3 bits (196), Expect = 6e-19
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 3   KHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVD 62
              ++  HP  KFSTGN ETL  +P   GL  + EL +F+ +HYS+N M LV+Y  + +D
Sbjct: 166 ALTANPGHPLSKFSTGNLETLSDKP---GLVVQQELKEFHEKHYSANNMKLVIYGNQPLD 222

Query: 63  KIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
           ++  L  + F DI N  R +   P    T E   
Sbjct: 223 ELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTG 256

Length = 937
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 96
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.81
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.79
PRK15101 961 protease3; Provisional 99.78
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 99.78
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 99.74
PTZ00432 1119 falcilysin; Provisional 99.52
KOG0960 467 consensus Mitochondrial processing peptidase, beta 99.5
PF05193 184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.26
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 98.83
PRK15101 961 protease3; Provisional 98.82
KOG2067 472 consensus Mitochondrial processing peptidase, alph 98.68
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 98.65
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 98.53
KOG2583 429 consensus Ubiquinol cytochrome c reductase, subuni 92.74
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 84.35
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 83.64
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.81  E-value=4.5e-20  Score=148.88  Aligned_cols=94  Identities=46%  Similarity=0.711  Sum_probs=88.3

Q ss_pred             CccccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCC
Q 045879            1 LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDR   80 (96)
Q Consensus         1 l~~~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~   80 (96)
                      |.++++.++|||+||.+||.+||...|..+  ++++.|++||++||++++|+|||+|+.++|.++.++.+.|+.+++...
T Consensus       168 l~~~l~~~~hp~~kF~tGN~~tL~~~p~~~--~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~  245 (974)
T KOG0959|consen  168 LLRSLSNPGHPYSKFSTGNKKTLLEGPREI--DLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKK  245 (974)
T ss_pred             HHHHhcCCCCcchhccccchhhhhhccccc--hHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCC
Confidence            356789999999999999999999998877  789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCC
Q 045879           81 NLFRFPGQPCTSEHLQ   96 (96)
Q Consensus        81 ~~~~~~~~~~~~~~~~   96 (96)
                      +.|.|+.+||.+++++
T Consensus       246 ~~p~f~~~p~~~e~~~  261 (974)
T KOG0959|consen  246 PRPVFPEPPFLPEELK  261 (974)
T ss_pred             CCCcccCCCCChHHhC
Confidence            9999999999998764

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query96
3cww_A 990 Crystal Structure Of Ide-Bradykinin Complex Length 8e-19
3qz2_A 990 The Structure Of Cysteine-Free Human Insulin Degrad 9e-19
2wby_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 9e-19
3e4z_A 990 Crystal Structure Of Human Insulin Degrading Enzyme 1e-18
3e4a_A 1019 Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut 1e-18
3hgz_A 969 Crystal Structure Of Human Insulin-Degrading Enzyme 1e-18
2g47_A 990 Crystal Structure Of Human Insulin-Degrading Enzyme 5e-18
2jg4_A 990 Substrate-Free Ide Structure In Its Closed Conforma 5e-18
3p7l_A 978 Rat Insulin Degrading Enzyme (Insulysin) Length = 9 5e-18
3tuv_A 1019 Crystal Structure Of Insulysin With Bound Atp Lengt 5e-18
3p7o_A 1019 Rat Insulin Degrading Enzyme (Insulysin) E111f Muta 5e-18
1q2l_A 939 Crystal Structure Of Pitrilysin Length = 939 4e-06
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990 Back     alignment and structure 
Iteration: 1

 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 59/96 (61%)
Query: 1   LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
           L K   +  HP+ KF TGN  TLE RP  +G+D R EL+KF++ +YSSNLM +VV  +ES
Sbjct: 175 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRES 234
Query: 61  VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
           +D +  LV   F ++ N +  L  FP  P   EHL+
Sbjct: 235 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990 Back     alignment and structure
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990 Back     alignment and structure
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990 Back     alignment and structure
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019 Back     alignment and structure
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969 Back     alignment and structure
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990 Back     alignment and structure
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990 Back     alignment and structure
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978 Back     alignment and structure
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019 Back     alignment and structure
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019 Back     alignment and structure
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin Length = 939 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query96
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 7e-24
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-20
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 1e-05
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 3e-04
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
 Score = 93.0 bits (230), Expect = 7e-24
 Identities = 43/96 (44%), Positives = 59/96 (61%)

Query: 1   LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
           L K   +  HP+ KF TGN  TLE RP  +G+D R EL+KF++ +YSSNLM +VV  +ES
Sbjct: 175 LEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRES 234

Query: 61  VDKIQGLVENKFQDIRNTDRNLFRFPGQPCTSEHLQ 96
           +D +  LV   F ++ N +  L  FP  P   EHL+
Sbjct: 235 LDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query96
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.79
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.78
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 99.72
3eoq_A 406 Putative zinc protease; two similar domains of bet 99.72
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.7
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 99.66
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.65
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 99.64
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 99.62
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 99.58
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 99.57
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 99.53
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 99.52
3go9_A 492 Insulinase family protease; IDP00573, structural g 99.51
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 99.49
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 99.46
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 99.43
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 98.33
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 97.8
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 97.27
3gwb_A434 Peptidase M16 inactive domain family protein; pept 92.1
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 91.81
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 91.59
3ih6_A197 Putative zinc protease; bordetella pertussis toham 90.97
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 90.36
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 89.86
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 88.69
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 87.93
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 87.45
3eoq_A406 Putative zinc protease; two similar domains of bet 87.29
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 83.46
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
Probab=99.79  E-value=1.2e-19  Score=144.34  Aligned_cols=89  Identities=44%  Similarity=0.726  Sum_probs=78.7

Q ss_pred             cccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCC
Q 045879            3 KHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNL   82 (96)
Q Consensus         3 ~~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~   82 (96)
                      +.+++++|||+++++|+.++|..+|..+|+.++++|++||++||+|+||+|+|+|++++++++++|+++|+.|+++..+.
T Consensus       177 ~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~  256 (990)
T 3cww_A          177 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPL  256 (990)
T ss_dssp             HHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHhcCCCCCcccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCC
Confidence            35688999999999999999999988888889999999999999999999999999999999999999999999876555


Q ss_pred             CCCCCCCCC
Q 045879           83 FRFPGQPCT   91 (96)
Q Consensus        83 ~~~~~~~~~   91 (96)
                      +.++.+++.
T Consensus       257 ~~~~~~~~~  265 (990)
T 3cww_A          257 PEFPEHPFQ  265 (990)
T ss_dssp             CCCCSCSSC
T ss_pred             CCCCCCCCC
Confidence            554444553
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 96
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 8e-08
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 1e-06
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 2e-05
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 6e-05
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 4e-04
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 0.003
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 0.004
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 0.004
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (107), Expect = 8e-08
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 1   LRKHLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKES 60
           +     +  HP  KFS GN ETL  +P       +  L  F+ ++YS+NLM  V+YS + 
Sbjct: 161 VSAETINPAHPGSKFSGGNLETLSDKPGN---PVQQALKDFHEKYYSANLMKAVIYSNKP 217

Query: 61  VDKIQGLVENKFQDIRNTD 79
           + ++  +  + F  + N +
Sbjct: 218 LPELAKMAADTFGRVPNKE 236
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query96
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.81
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.79
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.78
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.77
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.77
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.76
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.64
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.58
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.22
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 96.01
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 95.81
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 94.42
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 93.84
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 89.58
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 85.26
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 83.2
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 82.08
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=6.6e-21  Score=127.91  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=67.3

Q ss_pred             ccCCCCCCCCCCCCCCHhhhccccccCCcchHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhhcccCCCCCC
Q 045879            4 HLSSEDHPYHKFSTGNWETLEVRPKAKGLDTRHELIKFYNEHYSSNLMHLVVYSKESVDKIQGLVENKFQDIRNTDRNL   82 (96)
Q Consensus         4 ~~~~~~hp~~~~~~G~~~tl~~~~~~~~~~~~~~l~~f~~~~Y~~~~~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~   82 (96)
                      .++|++||||+++.|+.++|+++       ++++|++||++||.|+||+|+|+|++++++++++|+++|+.|+++..|.
T Consensus       140 ~~~~~~~p~g~~~~g~~~~i~~i-------t~~dl~~~~~~~y~p~n~~l~i~G~i~~~~~~~~ie~~f~~l~~~~~P~  211 (213)
T d3cx5a1         140 STAFQNTPLSLPTRGTLESLENL-------VVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPV  211 (213)
T ss_dssp             HHHTTTSGGGSCTTCCHHHHHTC-------CHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCC
T ss_pred             HhccccccccccccccHHHHHhh-------hHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence            45688999999999999999998       9999999999999999999999999999999999999999999876553
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure