Citrus Sinensis ID: 045881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MAGGGRQFIGFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcHHcHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHcHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHccHHccccccccccccccccc
Coil and Loop (DISEMBL)
magggrqfIGFTIIIFLLLLASessaiimgedeyieskqgceyVFTAFPYCLEfltglyykpsrkccnHIKKLNMIAKHRKGNAQRFCYCIEAmvrgtqppllasriqqlpitcntslsfpisasmdcsq
Flexible Loop (DISEMBL)
MAGGGRQFIGFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTslsfpisasmdcsq
Low Complexity Region (SEG)
MAGGGRQfigftiiifllllasessaiiMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ
Disordered region (IsUnstruct)
******QFIGFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSF**********
Disordered Region (DISOPRED)
********IGFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCS*
Disordered Region (DISEMBL)
MAGGGRQFIGFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPI********
Disordered Region (DISPRO)
****GRQFIGFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDC**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGGGRQFIGFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
A8MQA2	126	Non-specific lipid-transf	yes	no	0.684	0.706	0.640	3e-30
Q43875	115	Non-specific lipid-transf	N/A	no	0.807	0.913	0.307	5e-08
Q43767	115	Non-specific lipid-transf	N/A	no	0.807	0.913	0.298	1e-07
Q9XFS7	118	Non-specific lipid-transf	no	no	0.707	0.779	0.319	1e-07
Q42842	115	Non-specific lipid-transf	N/A	no	0.807	0.913	0.298	1e-07
Q43193	118	Non-specific lipid-transf	N/A	no	0.715	0.788	0.305	7e-07
Q43871	115	Non-specific lipid-transf	N/A	no	0.846	0.956	0.277	1e-06
Q43766	118	Non-specific lipid-transf	N/A	no	0.830	0.915	0.263	2e-06
Q42641	118	Non-specific lipid-transf	N/A	no	0.676	0.745	0.311	3e-06
Q43194	122	Non-specific lipid-transf	N/A	no	0.715	0.762	0.294	6e-06

>sp|A8MQA2|NLTPD_ARATH Non-specific lipid-transfer protein 13 OS=Arabidopsis thaliana GN=LTP13 PE=2 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 68/89 (76%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C Y +  F YCL+FLTG YYKP +KCC HI KLN+IAKH+K N +  C C+E M RG  P
Sbjct: 36  CAYTYDYFSYCLDFLTGYYYKPGKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTRGYTP 95

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
           P+LA +IQQLP+ CNT LSFPIS+SMDCS
Sbjct: 96  PMLADKIQQLPLLCNTHLSFPISSSMDCS 124

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43875|NLT42_HORVU Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 17  LLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMI 76
           L+L+A  ++ +I+  D  I     C  V +A   C+ +  G   KP   CC+ +K+L   
Sbjct: 9   LVLVAMVAAMLIVATDAAIS----CGQVSSALSPCISYARGNGAKPPVACCSGVKRLAG- 63

Query: 77  AKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           A     + Q  C CI++   G    L A +   +P  C  S+ + ISAS+DCS+
Sbjct: 64  AAQSTADKQAACKCIKSAAGG----LNAGKAAGIPSMCGVSVPYAISASVDCSK 113

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q43767|NLT41_HORVU Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 17  LLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMI 76
           L+L+A  ++ +++  D  I     C  V +A   C+ +  G   KP   CC+ +K+L   
Sbjct: 9   LVLVALVAAMLLVAADAAIS----CGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGA 64

Query: 77  AKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           A+    + Q  C CI++   G    L A +   +P  C  S+ + ISAS+DCS+
Sbjct: 65  AQS-TADKQAACKCIKSAAGG----LNAGKAAGIPSMCGVSVPYAISASVDCSK 113

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q9XFS7|NLTP5_ARATH Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 36  ESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMV 95
           E+   C  V  +   C  +LT   + P R CC+ +++LN +A+  + + Q+ C CI+   
Sbjct: 24  EAAISCGAVTGSLGQCYNYLTRGGFIP-RGCCSGVQRLNSLARTTR-DRQQACRCIQGAA 81

Query: 96  RGTQPPLLASRIQQLPITCNTSLSFPISASMDCS 129
           R     L A R  +LP  C   +S+PISA  +C+
Sbjct: 82  RALGSRLNAGRAARLPGACRVRISYPISARTNCN 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42842|NLT43_HORVU Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 17  LLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMI 76
           L+L+A  ++ +++  D  I     C  V +A   C+ +  G   KP   CC+ +K+L   
Sbjct: 9   LVLVAMVAAMLLVATDAAIS----CGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGA 64

Query: 77  AKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           A+    + Q  C CI++   G    L A +   +P  C  S+ + ISAS+DCS+
Sbjct: 65  AQS-TADKQAACKCIKSAAGG----LNAGKAAGIPSMCGVSVPYAISASVDCSK 113

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q43193|NLTP1_SORBI Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 36  ESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMV 95
           E+   C  V +A   CL +  G  + PS  CC+ ++ LN  A+    + +  C C++   
Sbjct: 24  EAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAART-TADRRAACNCLKNAA 82

Query: 96  RGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           RG    L A     +P  C  S+ + IS S DCS+
Sbjct: 83  RGIS-GLNAGNAASIPSKCGVSVPYTISTSTDCSR 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Sorghum bicolor (taxid: 4558)

>sp|Q43871|NLTP8_HORVU Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 12  TIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIK 71
           T    L L+A  ++ +++  D  I     C  V +A   C  +  G    PS  CC+ +K
Sbjct: 4   TAATKLALVALVAAMLLVAADAAIT----CGQVSSALGPCAAYAKGSGTSPSAGCCSGVK 59

Query: 72  KLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           +L  +A+    + Q  C C++++         A R   +P  C  S+ + ISAS+DCS+
Sbjct: 60  RLAGLARS-TADKQATCRCLKSVAGAYN----AGRAAGIPSRCGVSVPYTISASVDCSK 113

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q43766|NLTP3_HORVU Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 17  LLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMI 76
           L+L+A  ++ +++  D  I     C  V +A   C+ +  G   KP   CC+ +K+L   
Sbjct: 9   LVLVAMVAAMLLVATDAAIS----CGQVSSALSPCISYARGNGAKPPVACCSGVKRLAG- 63

Query: 77  AKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           A     + Q  C C++++    +  +   ++  +P  C  S+ FPIS S DC++
Sbjct: 64  AAQSTADKQAACRCLKSLATSIKG-INMGKVSGVPGKCGVSVPFPISMSTDCNK 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q42641|NLTPA_BRAOT Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +    C+ ++T     P   CC  + KLN +A+    + Q+ C C+E   R   P
Sbjct: 29  CGTVNSNVAPCIGYITQGGTLPG-ACCTGVSKLNSMARTTP-DRQQACRCLETAARALGP 86

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L A R   +P  C  S+ FPIS + +C+ 
Sbjct: 87  NLNAGRAAGIPKACGVSVPFPISTNTNCNN 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Brassica oleracea var. italica (taxid: 36774)

>sp|Q43194|NLTP2_SORBI Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 36  ESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMV 95
           E+   C  V +A   CL +  G    PS  CC+ ++ LN  A+    + +  C C++   
Sbjct: 28  EAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAART-TADRRAACNCLKNAA 86

Query: 96  RGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           RG +  L   +   +P  C  S+ + IS S DCS+
Sbjct: 87  RGIR-GLNVGKAASIPSKCGVSIPYTISTSTDCSR 120

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Sorghum bicolor (taxid: 4558)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
145334723	126	non-specific lipid-transfer protein 13 [	0.684	0.706	0.640	2e-28
297791431	126	predicted protein [Arabidopsis lyrata su	0.684	0.706	0.629	9e-28
224133474	127	predicted protein [Populus trichocarpa]	0.8	0.818	0.565	1e-23
356542149	107	PREDICTED: non-specific lipid-transfer p	0.776	0.943	0.5	5e-23
224061909	124	predicted protein [Populus trichocarpa]	0.907	0.951	0.375	4e-14
2746339	140	ATA7 [Arabidopsis thaliana] gi|21536643|	0.853	0.792	0.338	3e-13
154358125	129	At4g28395-like protein [Arabidopsis lyra	0.869	0.875	0.341	4e-13
154358159	129	At4g28395-like protein [Arabidopsis lyra	0.692	0.697	0.393	4e-13
154358111	129	At4g28395-like protein [Arabidopsis lyra	0.692	0.697	0.393	5e-13
154358107	129	At4g28395-like protein [Arabidopsis hall	0.692	0.697	0.393	5e-13

>gi|145334723|ref|NP_001078707.1| non-specific lipid-transfer protein 13 [Arabidopsis thaliana] gi|218527937|sp|A8MQA2.1|NLTPD_ARATH RecName: Full=Non-specific lipid-transfer protein 13; Short=LTP 13; Flags: Precursor gi|332007700|gb|AED95083.1| non-specific lipid-transfer protein 13 [Arabidopsis thaliana]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 68/89 (76%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C Y +  F YCL+FLTG YYKP +KCC HI KLN+IAKH+K N +  C C+E M RG  P
Sbjct: 36  CAYTYDYFSYCLDFLTGYYYKPGKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTRGYTP 95

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
           P+LA +IQQLP+ CNT LSFPIS+SMDCS
Sbjct: 96  PMLADKIQQLPLLCNTHLSFPISSSMDCS 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791431|ref|XP_002863600.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309435|gb|EFH39859.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 68/89 (76%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C Y +  F YCL+FLTG +YKP +KCC HI KLN+IAKH+K N +  C C+E M RG  P
Sbjct: 36  CAYTYDYFSYCLDFLTGYHYKPGKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTRGYTP 95

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
           P+LA +IQQLP+ CNT LSFPIS+SMDCS
Sbjct: 96  PILADKIQQLPLLCNTHLSFPISSSMDCS 124

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133474|ref|XP_002328051.1| predicted protein [Populus trichocarpa] gi|222837460|gb|EEE75839.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 76/115 (66%), Gaps = 11/115 (9%)

Query: 16  FLLLLASESSAIIMGED-EYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLN 74
            L+LLAS       G D  Y ESK  CE VF  FPYCL+FLTG Y KPS++CC+HI KLN
Sbjct: 9   LLVLLAS-------GLDIAYSESK--CEPVFEYFPYCLDFLTGYYNKPSKRCCDHIYKLN 59

Query: 75  MIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCS 129
            +AK   G AQ  C+CIE MVRGT+P + A RI +LP  C T LSFPIS   DC+
Sbjct: 60  RLAKRGLG-AQLICWCIEYMVRGTEPQIRADRISELPTKCQTHLSFPISEWKDCN 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542149|ref|XP_003539533.1| PREDICTED: non-specific lipid-transfer protein 13-like [Glycine max]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 74/106 (69%), Gaps = 5/106 (4%)

Query: 29  MGEDEYI--ESKQGCEYVFTAFPYCLEFLTGL--YYKPSRKCCNHIKKLNMIAKHRKGNA 84
           MGE + +   +   CE +F  FP CLEFL G   Y +PSR+CC H+ KLN++A+HR G  
Sbjct: 1   MGEAKVLVPSAISACERIFEYFPNCLEFLVGDPNYVRPSRRCCQHVVKLNILARHRTG-P 59

Query: 85  QRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           +  C+CI+ MV+G  P L+ S+IQ LP+ C+T+LSFPIS S+DCS+
Sbjct: 60  RTICWCIQVMVKGMTPALVPSKIQDLPLMCHTTLSFPISDSIDCSK 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061909|ref|XP_002300659.1| predicted protein [Populus trichocarpa] gi|222842385|gb|EEE79932.1| predicted protein [Populus trichocarpa]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 10  GFTIIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNH 69
            F   + L L+ S    I+  +D+  ++   C  ++  FP C E+L GL +   +KCC+ 
Sbjct: 3   AFVRSLVLALMVSRFITIMASDDDPYDA--ICSPIWGYFPDCAEYLGGLSHHLPKKCCHS 60

Query: 70  IKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCS 129
           I+KLN IAK  K   +  C+CIEA +      L  SRI++LP  C+T + FPIS +M+CS
Sbjct: 61  IRKLNEIAKKTKKGPKVVCFCIEAFMVPQDFHLKPSRIKKLPKKCHTDILFPISETMNCS 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2746339|gb|AAC39503.1| ATA7 [Arabidopsis thaliana] gi|21536643|gb|AAM60975.1| unknown [Arabidopsis thaliana]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 16/127 (12%)

Query: 13  IIIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKK 72
           ++ FL+L+ +  S     ++  +E    C  VF +F  C+ F+ G++ +PS  CC  +  
Sbjct: 8   VVAFLVLMKTAVSQ----DNNPLEH---CRDVFVSFMPCMGFVEGIFQQPSPDCCRGVTH 60

Query: 73  LNMIAK---------HRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPIS 123
           LN + K            G  +R C CIE M      P L + I  LP+ C+ +LSFPIS
Sbjct: 61  LNNVVKFTSPGSRNRQDSGETERVCLCIEIMGNANHLPFLPAAINNLPLRCSLTLSFPIS 120

Query: 124 ASMDCSQ 130
             MDCSQ
Sbjct: 121 VDMDCSQ 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154358125|gb|ABS79086.1| At4g28395-like protein [Arabidopsis lyrata subsp. petraea] gi|154358127|gb|ABS79087.1| At4g28395-like protein [Arabidopsis lyrata subsp. petraea] gi|154358131|gb|ABS79089.1| At4g28395-like protein [Arabidopsis lyrata subsp. petraea]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)

Query: 14  IIFLLLLASESSAIIMGEDEYIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKL 73
           I+ + L     +A+    D        C  VF +F  C+ F+ G++ +PS  CC  +  L
Sbjct: 7   ILVVTLFVMMKTAVSQDNDPMAH----CRDVFVSFMPCMGFVEGIFQQPSPDCCRGVTHL 62

Query: 74  NMIAK---------HRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLSFPISA 124
           N I K            G  +R C CIE M      P L + I  LP+ C+ +LSFPIS 
Sbjct: 63  NNIVKFTSPGSRNRQDTGETERVCLCIEIMGNANHLPFLPAAINNLPLRCSLTLSFPISV 122

Query: 125 SMDCSQ 130
           +MDCSQ
Sbjct: 123 AMDCSQ 128

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154358159|gb|ABS79103.1| At4g28395-like protein [Arabidopsis lyrata subsp. petraea]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAK---------HRKGNAQRFCYCI 91
           C  VF +F  C+ F+ G++ +PS  CC  +  LN I K            G  +R C CI
Sbjct: 30  CRDVFVSFMPCMGFVEGIFQQPSXDCCRGVTHLNNIVKFTSPGSRNRQDTGETERVCLCI 89

Query: 92  EAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           E M      P L + I  LP+ C+ +LSFPIS +MDCSQ
Sbjct: 90  EIMGNANHLPFLPAAINNLPLRCSLTLSFPISVAMDCSQ 128

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154358111|gb|ABS79079.1| At4g28395-like protein [Arabidopsis lyrata subsp. petraea] gi|154358169|gb|ABS79108.1| At4g28395-like protein [Arabidopsis lyrata subsp. petraea] gi|154358177|gb|ABS79112.1| At4g28395-like protein [Arabidopsis lyrata subsp. petraea]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAK---------HRKGNAQRFCYCI 91
           C  VF +F  C+ F+ G++ +PS  CC  +  LN I K            G  +R C CI
Sbjct: 30  CRDVFVSFMPCMGFVEGIFQQPSPDCCRGVTHLNNIVKFTSPGSRNRQDTGETERVCLCI 89

Query: 92  EAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           E M      P L + I  LP+ C+ +LSFPIS +MDCSQ
Sbjct: 90  EIMGNANHLPFLPAAINNLPLRCSLTLSFPISVAMDCSQ 128

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154358107|gb|ABS79077.1| At4g28395-like protein [Arabidopsis halleri subsp. halleri]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAK---------HRKGNAQRFCYCI 91
           C  VF +F  C+ F+ G++ +PS  CC  +  LN I K            G  +R C CI
Sbjct: 30  CRDVFVSFMPCMGFVEGIFQQPSPDCCRGVTHLNNIVKFTAPGSRNRQDTGETERVCLCI 89

Query: 92  EAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
           E M      P L + I  LP+ C+ +LSFPIS +MDCSQ
Sbjct: 90  EIMGNANHLPFLPAAINNLPLRCSLTLSFPISVAMDCSQ 128

Source: Arabidopsis halleri subsp. halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:4010714038	126	AT5G44265 [Arabidopsis thalian	0.684	0.706	0.640	6.2e-30
TAIR|locus:505006530	180	A7 "ANTHER 7" [Arabidopsis tha	0.692	0.5	0.393	5.4e-15
TAIR|locus:2081855	118	LTP5 "lipid transfer protein 5	0.707	0.779	0.319	7.6e-09
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.630	0.732	0.322	4.8e-07
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.669	0.731	0.322	1.6e-06
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.653	0.720	0.314	2.6e-06
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.661	0.722	0.303	3.4e-06
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.669	0.713	0.247	5.5e-06
TAIR|locus:2062116	116	AT2G18370 [Arabidopsis thalian	0.707	0.793	0.298	7e-06
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.684	0.773	0.316	9e-06

TAIR|locus:4010714038 AT5G44265 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/89 (64%), Positives = 68/89 (76%)

Query:    41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
             C Y +  F YCL+FLTG YYKP +KCC HI KLN+IAKH+K N +  C C+E M RG  P
Sbjct:    36 CAYTYDYFSYCLDFLTGYYYKPGKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTRGYTP 95

Query:   101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
             P+LA +IQQLP+ CNT LSFPIS+SMDCS
Sbjct:    96 PMLADKIQQLPLLCNTHLSFPISSSMDCS 124

GO:0006869 "lipid transport" evidence=IEA

TAIR|locus:505006530 A7 "ANTHER 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 39/99 (39%), Positives = 54/99 (54%)

Query:    41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAK-------HRK--GNAQRFCYCI 91
             C  VF +F  C+ F+ G++ +PS  CC  +  LN + K       +R+  G  +R C CI
Sbjct:    69 CRDVFVSFMPCMGFVEGIFQQPSPDCCRGVTHLNNVVKFTSPGSRNRQDSGETERVCLCI 128

Query:    92 EAMVRGTQPPLLASRIQQLPITCNTSLSFPISASMDCSQ 130
             E M      P L + I  LP+ C+ +LSFPIS  MDCSQ
Sbjct:   129 EIMGNANHLPFLPAAINNLPLRCSLTLSFPISVDMDCSQ 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0048235 "pollen sperm cell differentiation" evidence=TAS

TAIR|locus:2081855 LTP5 "lipid transfer protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/94 (31%), Positives = 49/94 (52%)

Query:    36 ESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMV 95
             E+   C  V  +   C  +LT   + P R CC+ +++LN +A+  + + Q+ C CI+   
Sbjct:    24 EAAISCGAVTGSLGQCYNYLTRGGFIP-RGCCSGVQRLNSLARTTR-DRQQACRCIQGAA 81

Query:    96 RGTQPPLLASRIQQLPITCNTSLSFPISASMDCS 129
             R     L A R  +LP  C   +S+PISA  +C+
Sbjct:    82 RALGSRLNAGRAARLPGACRVRISYPISARTNCN 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 29/90 (32%), Positives = 47/90 (52%)

Query:    41 CEYVFTAFPYCLEFLT-GLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQ 99
             C  V ++   CL +L+ G    P   CC  +KKLN +A+    + Q+ C C+++  +G  
Sbjct:    27 CGTVASSLSPCLGYLSKGGVVPPP--CCAGVKKLNGMAQTTP-DRQQACRCLQSAAKGVN 83

Query:   100 PPLLASRIQQLPITCNTSLSFPISASMDCS 129
             P L +     LP  C  S+ +PIS S +C+
Sbjct:    84 PSLASG----LPGKCGVSIPYPISTSTNCA 109

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 31/96 (32%), Positives = 46/96 (47%)

Query:    36 ESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAM- 94
             ES   C  V +    CL +LT     PS+ CC  +K L  +A+      Q  C C++   
Sbjct:    23 ESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQ-VCECLKLAG 80

Query:    95 --VRGTQPPLLASRIQQLPITCNTSLSFPISASMDC 128
               ++G    L+A+    LP TC  S+ +PIS S +C
Sbjct:    81 KEIKGLNTDLVAA----LPTTCGVSIPYPISFSTNC 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 28/89 (31%), Positives = 42/89 (47%)

Query:    41 CEYVFTAFPYCLEF-LTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQ 99
             C  V +    C+ + L G    P+  CC+ +K LN IAK    + Q+ C CI+   R   
Sbjct:    29 CGSVNSNLAACIGYVLQGGVIPPA--CCSGVKNLNSIAKTTP-DRQQACNCIQGAARALG 85

Query:   100 PPLLASRIQQLPITCNTSLSFPISASMDC 128
               L A R   +P  C  ++ + IS S +C
Sbjct:    86 SGLNAGRAAGIPKACGVNIPYKISTSTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 27/89 (30%), Positives = 40/89 (44%)

Query:    41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
             C  V      CL +L      PS  CCN +  L   A   K + Q  C C+++ V  T P
Sbjct:    31 CPQVNMYLAQCLPYLKA-GGNPSPMCCNGLNSLKAAAPE-KADRQVACNCLKS-VANTIP 87

Query:   101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
              +     +QLP  C  ++  P S ++DC+
Sbjct:    88 GINDDFAKQLPAKCGVNIGVPFSKTVDCN 116

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query:    41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
             C  V +    C+ ++TG     S++CC+ ++ LN +A+    + +  C C++++    + 
Sbjct:    33 CGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARSSP-DRKIACRCLKSLATSIKS 91

Query:   101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
              +   ++  +P  C  S+ FPIS S +C+
Sbjct:    92 -INMGKVSGVPGKCGVSVPFPISMSTNCN 119

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2062116 AT2G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 29/97 (29%), Positives = 41/97 (42%)

Query:    34 YIESKQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEA 93
             Y ES   C  V      C+ +LT     P   CC+ +K L   A     + +  C CI++
Sbjct:    21 YSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSL-AAATTTSADKKAACQCIKS 79

Query:    94 MVRG-TQPPLLASRIQQLPITCNTSLSFPISASMDCS 129
             +    T  P LA   Q L   C  SL    S ++DC+
Sbjct:    80 VANSVTVKPELA---QALASNCGASLPVDASPTVDCT 113

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 31/98 (31%), Positives = 48/98 (48%)

Query:    35 IESKQGCEYVFTAFPYCLEFLT-GLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEA 93
             +++   C  V  +   C  +L+ G    PS  CC  +K LN +AK    + Q+ C CI++
Sbjct:    21 VDAAISCGTVAGSLAPCATYLSKGGLVPPS--CCAGVKTLNSMAKTTP-DRQQACRCIQS 77

Query:    94 MVRGTQP--PLLASRIQQLPITCNTSLSFPISASMDCS 129
               +      P LAS    LP  C  S+ +PIS S +C+
Sbjct:    78 TAKSISGLNPSLASG---LPGKCGVSIPYPISMSTNCN 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8MQA2	NLTPD_ARATH	No assigned EC number	0.6404	0.6846	0.7063	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT5G44265 lipid binding; Encodes a Protease inhibitor/seed storage/LTP family protein. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members- At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. ; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls [...] (126 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	3e-15

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 65.4 bits (160), Expect = 3e-15
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +    CL +LTG    PS  CC+ +K LN +AK    + Q  C C+++   G   
Sbjct: 3   CGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAK-TTADRQAACNCLKSAAAGI-S 60

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
            L   R   LP  C  S+ +PIS S DCS
Sbjct: 61  GLNPGRAAGLPGKCGVSIPYPISPSTDCS 89

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.93
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.53
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.49
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.34
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.12
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	99.01
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.96

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.93  E-value=1.5e-26  Score=156.58  Aligned_cols=89  Identities=37%  Similarity=0.667  Sum_probs=81.3

Q ss_pred             CCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881           39 QGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL  118 (130)
Q Consensus        39 ~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~  118 (130)
                      .+|.++...|.||++|+++++..|+++||+++++|++.+++.. |++++|+|+++...+++ +||++|+++||++||+++
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~-~~~~~C~C~~~~~~~~~-~i~~~~a~~LP~~C~v~~   78 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTA-DRQAACNCLKSAAAGIS-GLNPGRAAGLPGKCGVSI   78 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCC-chhhhhhcccccccccC-CCCHHHHHhChHhcccCC
Confidence            3699999999999999998877899999999999999888764 99999999988777763 599999999999999999


Q ss_pred             CCCCCCCCCCC
Q 045881          119 SFPISASMDCS  129 (130)
Q Consensus       119 p~~is~~~dC~  129 (130)
                      +|||+++|||+
T Consensus        79 ~~~i~~~~dC~   89 (89)
T cd01960          79 PYPISPSTDCS   89 (89)
T ss_pred             CCCCCCCCCCC
Confidence            99999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.53  E-value=6.2e-15  Score=96.56  Aligned_cols=68  Identities=24%  Similarity=0.506  Sum_probs=54.0

Q ss_pred             chhcccCccccHHHhhCCC--CCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881           41 CEYVFTAFPYCLEFLTGLY--YKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL  118 (130)
Q Consensus        41 C~~v~~~L~pC~~yv~g~~--~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~  118 (130)
                      |+.....|.||++|+++++  ..|++.||+++|++         |++  |+|.+.....+. .||.++|++||++||+++
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---------~~~--C~C~~~~~~~~~-~i~~~~a~~Lp~~Cgv~~   68 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---------DLP--CLCRYKTSLVLQ-IIDPDKAVYLPAKCGLPL   68 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---------CcC--CEeeccCCCccc-ccCHHHHHHHHHHcCCCC
Confidence            4544578999999999876  36999999999973         444  888765544553 699999999999999987


Q ss_pred             CC
Q 045881          119 SF  120 (130)
Q Consensus       119 p~  120 (130)
                      |.
T Consensus        69 p~   70 (73)
T cd04660          69 PP   70 (73)
T ss_pred             CC
Confidence            64

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.49  E-value=2.1e-14  Score=90.82  Aligned_cols=62  Identities=26%  Similarity=0.517  Sum_probs=52.0

Q ss_pred             ccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCC-CHHHHhhccccCCC
Q 045881           48 FPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPL-LASRIQQLPITCNT  116 (130)
Q Consensus        48 L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~i-n~~ra~~LP~~Cgv  116 (130)
                      |.||++|+++++..|+++||++++++++      .|++++|+++++...... ++ |.+++.+||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~------~~~~ClC~~~~~~~~~~~-~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVK------SDPKCLCAALNGPGASLL-GLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHh------cChhhHHHHHcCcccccc-CcccHHHHHhchHhcCC
Confidence            5799999998877899999999999875      277889999987654432 44 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.34  E-value=1.5e-13  Score=92.72  Aligned_cols=72  Identities=22%  Similarity=0.464  Sum_probs=47.3

Q ss_pred             ccCCchhcccCcccc---HHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccc-cCCCCCCCHHHHhhccc
Q 045881           37 SKQGCEYVFTAFPYC---LEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMV-RGTQPPLLASRIQQLPI  112 (130)
Q Consensus        37 a~~~C~~v~~~L~pC---~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~-~~~~~~in~~ra~~LP~  112 (130)
                      ...+|.   ..|.+|   ..|+.+ ...||+.||+++|++.+      .|+.++|+.+++.. ..+  +||.+|+.+||+
T Consensus        18 ~~~~c~---~~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~------~~~~ClC~~~~~~~~~~~--~in~~~a~~Lp~   85 (96)
T PF14368_consen   18 CCCSCA---NSLLPCCPCLCYVTG-GPAPSAACCSALKSVVQ------ADPPCLCQLLNSPGAPGF--GINVTRALALPA   85 (96)
T ss_dssp             BTTB-H---CCCCHH--HHHHHCC------HHHHHHHCC----------HCCHHHCCCC-CCHCHH--CCTCHHHHHHHH
T ss_pred             CcchhH---HHHhccccchhccCC-CCCCCHHHHHHHHHhcc------CCCCCHHHhcCccccccC--CcCHHHHHHHHH
Confidence            345664   447776   788884 45899999999999853      26778888887654 344  799999999999


Q ss_pred             cCCCCCCC
Q 045881          113 TCNTSLSF  120 (130)
Q Consensus       113 ~Cgv~~p~  120 (130)
                      +||++.+.
T Consensus        86 ~Cg~~~~~   93 (96)
T PF14368_consen   86 ACGVPVPP   93 (96)
T ss_dssp             HCTSS-S-
T ss_pred             HcCCCCCC
Confidence            99999876

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.12  E-value=5.2e-11  Score=76.97  Aligned_cols=61  Identities=18%  Similarity=0.408  Sum_probs=47.3

Q ss_pred             cCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCCC
Q 045881           46 TAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLS  119 (130)
Q Consensus        46 ~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~p  119 (130)
                      +.|.+|++|++++ ..||++||+.+|+-         + .++|..+++  ..+...||.++|+.||++||+++|
T Consensus         4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~---------~-~CLC~y~~~--p~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGG-SPPSAACCAKLKEQ---------Q-SCLCQYAKN--PSLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCC-CCCCHHHHHHHhcC---------C-CCeeeeecC--ccHHhhcCcHHHHHHHHHcCCCCC
Confidence            4799999999976 47999999998871         3 455555544  234346999999999999999875

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=99.01  E-value=5.1e-12  Score=84.72  Aligned_cols=74  Identities=36%  Similarity=0.753  Sum_probs=55.6

Q ss_pred             chhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCC---------CCCCCHHHHhhcc
Q 045881           41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGT---------QPPLLASRIQQLP  111 (130)
Q Consensus        41 C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~---------~~~in~~ra~~LP  111 (130)
                      |..+...+.+|.+|++++...|+..||++++++.         +++.|..++..+...         ...++..+|..||
T Consensus         8 ~~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l~---------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP   78 (90)
T PF00234_consen    8 CSPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQLD---------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLP   78 (90)
T ss_dssp             CGTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHH
T ss_pred             hhhccccccccHHHHhcccccchHHHhHHHHHHh---------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            4444456899999999876689999999999983         345666666544331         0258899999999


Q ss_pred             ccCCCCCCCCCCCCCCC
Q 045881          112 ITCNTSLSFPISASMDC  128 (130)
Q Consensus       112 ~~Cgv~~p~~is~~~dC  128 (130)
                      +.||++++|     +||
T Consensus        79 ~~C~v~~~~-----~~C   90 (90)
T PF00234_consen   79 SMCNVSPPY-----TDC   90 (90)
T ss_dssp             HHTTSSSSS-----S-G
T ss_pred             HHCCCCCCC-----CCC
Confidence            999999998     666

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.96  E-value=8.2e-10  Score=70.69  Aligned_cols=70  Identities=27%  Similarity=0.566  Sum_probs=51.7

Q ss_pred             chhcccCccccHHHhhCC--CCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCC----CCHHHHhhccccC
Q 045881           41 CEYVFTAFPYCLEFLTGL--YYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPP----LLASRIQQLPITC  114 (130)
Q Consensus        41 C~~v~~~L~pC~~yv~g~--~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~----in~~ra~~LP~~C  114 (130)
                      |..+...+.+|.+|+++.  ...|+.+||++++.++          ...|+|...........    ++..++.+||+.|
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~----------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C   70 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN----------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSAC   70 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc----------ccCCcchhhhcccccccchhhhhHHHHHhhHHhc
Confidence            556666778999999986  4578999999999974          12477754322222112    5899999999999


Q ss_pred             CCCCCC
Q 045881          115 NTSLSF  120 (130)
Q Consensus       115 gv~~p~  120 (130)
                      |+..++
T Consensus        71 ~~~~~~   76 (79)
T smart00499       71 GVPPPY   76 (79)
T ss_pred             CCCCCC
Confidence            999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		6e-06
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		6e-06
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		7e-06
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		2e-05
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		7e-04

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +A   C+ +  G    PS  CC+ ++ LN  A+    + +  C C++    G   
Sbjct: 4   CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAART-TADRRAACNCLKNAAAGVS- 61
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L A     +P  C  S+ + IS S DCS+
Sbjct: 62  GLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +    CL ++ G    PS +CCN ++ L+  A+   G+ Q  C C++ + RG   
Sbjct: 3   CGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQ-SSGDRQTVCNCLKGIARGIHN 60
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L  +    +P  CN ++ + IS  +DCS+
Sbjct: 61  -LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +    CL ++ G    PS +CCN ++ L+  A+   G+ Q  C C++ + RG   
Sbjct: 3   CGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQ-SSGDRQTVCNCLKGIARGIHN 60
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L  +    +P  CN ++ + IS  +DCS+
Sbjct: 61  -LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +A   CL +  G    PS  CC+ ++ L   A     + +  C C++   RG + 
Sbjct: 3   CGQVNSAVGPCLTYARG-GAGPSAACCSGVRSLKA-AASTTADRRTACNCLKNAARGIKG 60
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L A     +P  C  S+ + ISAS+DCS+
Sbjct: 61  -LNAGNAASIPSKCGVSVPYTISASIDCSR 89

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +    CL +LTG    PS +CC  +KKL + A +   + Q  C C+++   G+  
Sbjct: 4   CGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKL-LAAANTTPDRQAACNCLKSAA-GSIT 60
Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCS 129
            L  +    LP  C  ++ + IS + +C+
Sbjct: 61  KLNTNNAAALPGKCGVNIPYKISTTTNCN 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	3e-19
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	2e-17
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	1e-16
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	1e-16
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	9e-16

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 75.3 bits (185), Expect = 3e-19
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +A   C+ +  G    PS  CC+ ++ LN  A+    + +  C C++    G   
Sbjct: 4   CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAART-TADRRAACNCLKNAAAGV-S 61

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L A     +P  C  S+ + IS S DCS+
Sbjct: 62  GLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 70.6 bits (173), Expect = 2e-17
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C +V +    CL ++ G    PS +CC+ +K L+  A+  + + Q  C C++ + RG   
Sbjct: 3   CGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARS-QSDRQSACNCLKGIARGI-H 59

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L     + +P  C  +L + IS ++DCS+
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 68.7 bits (168), Expect = 1e-16
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +    CL +L      P  +CC  +K L   A+    + Q  C C+++       
Sbjct: 4   CGQVTSNLAPCLAYLRN--TGPLGRCCGGVKALVNSART-TEDRQIACTCLKSAAGAI-S 59

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            +   +   LP TC  ++ + IS S DCS+
Sbjct: 60  GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 68.7 bits (168), Expect = 1e-16
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V ++   C+ ++ G        CCN I+ +N +A+    + Q  C C++ +     P
Sbjct: 4   CGQVSSSLAPCIPYVRG-GGAVPPACCNGIRNVNNLART-TPDRQAACNCLKQLSASV-P 60

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            +  +    LP  C  S+ + ISAS +C+ 
Sbjct: 61  GVNPNNAAALPGKCGVSIPYKISASTNCAT 90

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 66.4 bits (162), Expect = 9e-16
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V      C+ FL          CC  +K +   ++    + +  C C++A       
Sbjct: 3   CGQVQGNLAQCIGFLQK-GGVVPPSCCTGVKNILNSSRT-TADRRAVCSCLKAAAGAV-R 59

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            +  +  + LP  C  ++ + IS S +C+ 
Sbjct: 60  GINPNNAEALPGKCGVNIPYKISTSTNCNS 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.95
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.95
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.95
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.94
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.94
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.93
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.58
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.31
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.28
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	89.7

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.95  E-value=1.9e-30  Score=177.04  Aligned_cols=90  Identities=28%  Similarity=0.572  Sum_probs=82.9

Q ss_pred             cCCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCC
Q 045881           38 KQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTS  117 (130)
Q Consensus        38 ~~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~  117 (130)
                      +++|+++...|.||++||+++. .|++.||+++++|++.++|++ |||++|+|+++.+..+ ++||.+||.+||++|||+
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~~-~p~~~CC~gv~~l~~~a~t~~-dr~~~C~clk~~a~~~-~~in~~~a~~LP~~CgV~   77 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGGP-GPSPQCCGGVKKLLAAANTTP-DRQAACNCLKSAAGSI-TKLNTNNAAALPGKCGVN   77 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSS-CCCHHHHHHHHHHHHSCCSHH-HHHHHHHHHHHHGGGC-TTCCHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHhHHHHHcCCC-CCCCchhhHHHHHHHHhcCcc-cHHHHHHhHHhhhhcc-CCcCHHHHHhhhHhcCCC
Confidence            3789999999999999999864 699999999999999999875 9999999999877666 489999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 045881          118 LSFPISASMDCSQ  130 (130)
Q Consensus       118 ~p~~is~~~dC~~  130 (130)
                      +|||||+++||++
T Consensus        78 ~p~~Is~~~dC~~   90 (93)
T 2ljo_A           78 IPYKISTTTNCNT   90 (93)
T ss_dssp             CSSCCSTTCCGGG
T ss_pred             CCCCCCCCCCCCC
Confidence            9999999999985

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.95  E-value=1.3e-29  Score=172.63  Aligned_cols=90  Identities=29%  Similarity=0.610  Sum_probs=83.8

Q ss_pred             CCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881           39 QGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL  118 (130)
Q Consensus        39 ~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~  118 (130)
                      ++|+++...|.||++|++++++.|+++||+++|+|+++++|++ |||..|+|++....+++ +||.++|++||++|||++
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~-dr~~~ClC~~~~~~~~~-~in~~~A~~LP~~C~v~~   79 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTA-DRRAACNCLKNAAAGVS-GLNAGNAASIPSKCGVSI   79 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHCCC
T ss_pred             CChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCC-CCcccCEeecccccccc-CcCHHHHHHHHHHcCCCC
Confidence            6799999999999999998877899999999999999999975 99999999987777775 899999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045881          119 SFPISASMDCSQ  130 (130)
Q Consensus       119 p~~is~~~dC~~  130 (130)
                      ||||+++|||++
T Consensus        80 p~~is~~~dC~~   91 (93)
T 1afh_A           80 PYTISTSTDCSR   91 (93)
T ss_dssp             SSCCSTTCCSSS
T ss_pred             CCCCCCCCCCcc
Confidence            999999999986

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.95  E-value=1.8e-29  Score=171.09  Aligned_cols=89  Identities=29%  Similarity=0.642  Sum_probs=82.5

Q ss_pred             CCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881           39 QGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL  118 (130)
Q Consensus        39 ~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~  118 (130)
                      ++|+++...|.||++|++++++ |+++||+++|+|+++|+|++ |||..|+|+++.+.+++ +||.++|++||++|||++
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~-dr~~~ClClk~~~~~~~-~in~~~A~~LP~~C~v~~   77 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQS-DRQSACNCLKGIARGIH-NLNEDNARSIPPKCGVNL   77 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHH-HHHHHHHHHHHHHTTCT-TCCHHHHHTHHHHHTCCC
T ss_pred             CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCC-CCCccCcCccCchhccC-CcCHHHHHHHHHHcCCCC
Confidence            3699999999999999998876 99999999999999999886 99999999988777775 899999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045881          119 SFPISASMDCSQ  130 (130)
Q Consensus       119 p~~is~~~dC~~  130 (130)
                      |||||++|||++
T Consensus        78 p~~is~~~dC~~   89 (90)
T 1bwo_A           78 PYTISLNIDCSR   89 (90)
T ss_dssp             SSCCCTTCCGGG
T ss_pred             CCCCCCCCCCCC
Confidence            999999999985

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.94  E-value=3.2e-29  Score=170.23  Aligned_cols=88  Identities=26%  Similarity=0.529  Sum_probs=82.0

Q ss_pred             CCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881           39 QGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL  118 (130)
Q Consensus        39 ~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~  118 (130)
                      ++|+++...|.||++|++++++ |+ +||+++|+|++.++|++ |||..|+|+++.+..++ +||.++|++||++|||++
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~-dr~~~ClClk~~~~~~~-~in~~~A~~LP~~C~v~~   77 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTE-DRQIACTCLKSAAGAIS-GINLGKAAGLPSTCGVNI   77 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTH-HHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHTTCCC
T ss_pred             CChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCC-CCCccCCCccccccccC-CcChhHHHHHHHHcCCCC
Confidence            6799999999999999999877 88 99999999999999975 99999999987777775 899999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045881          119 SFPISASMDCSQ  130 (130)
Q Consensus       119 p~~is~~~dC~~  130 (130)
                      ||||+++|||++
T Consensus        78 p~~is~~~dC~~   89 (91)
T 1t12_A           78 PYKISPSTDCSK   89 (91)
T ss_dssp             SSCSSSSSCCTT
T ss_pred             CCCCCCCCCCcc
Confidence            999999999986

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.94  E-value=1e-28  Score=167.66  Aligned_cols=89  Identities=20%  Similarity=0.481  Sum_probs=81.9

Q ss_pred             CCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881           39 QGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL  118 (130)
Q Consensus        39 ~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~  118 (130)
                      ++|+++...|.||++|++++++ |+++||+++|+|++.++|++ |||..|+|+++.+..++ +||.++|++||++|||++
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~-d~~~~ClC~k~~~~~~~-~in~~~A~~LP~~Cgv~~   77 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTA-DRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNI   77 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSH-HHHHHHHHHHHHTTCCS-SCCHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCC-CCCcCCcccCCcccccC-CcCHHHHHHHHHHcCCCC
Confidence            3699999999999999998875 99999999999999999875 99999999988777775 899999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045881          119 SFPISASMDCSQ  130 (130)
Q Consensus       119 p~~is~~~dC~~  130 (130)
                      ||+||++|||++
T Consensus        78 p~~is~~~dC~~   89 (91)
T 1siy_A           78 PYKISTSTNCNS   89 (91)
T ss_dssp             SSCSCTTSCSST
T ss_pred             CCCCCCCCCCcc
Confidence            999999999986

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.93  E-value=2.5e-28  Score=165.95  Aligned_cols=89  Identities=25%  Similarity=0.550  Sum_probs=82.0

Q ss_pred             CCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881           39 QGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL  118 (130)
Q Consensus        39 ~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~  118 (130)
                      ++|+++...|.||++|+++++ .|+++||+++|+|+++|+|++ |||..|+|++..+..++ +||.++|++||++|||++
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~-d~~~~ClC~~~~~~~~~-~in~~~A~~LP~~Cgv~~   78 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTP-DRQAACNCLKQLSASVP-GVNPNNAAALPGKCGVSI   78 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHH-HHHHHHHHHHHHHHHST-TCCHHHHHHHHHHTTCCC
T ss_pred             CChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccC-CCCcCCccccCcccccC-ccChHHHHHHHHHcCCCC
Confidence            679999999999999999876 588999999999999999975 88899999987777786 899999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045881          119 SFPISASMDCSQ  130 (130)
Q Consensus       119 p~~is~~~dC~~  130 (130)
                      ||+||++|||++
T Consensus        79 p~~is~~~dC~~   90 (92)
T 2alg_A           79 PYKISASTNCAT   90 (92)
T ss_dssp             SSCSSTTSCGGG
T ss_pred             CCCCCCCCCCcc
Confidence            999999999985

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.58  E-value=9.8e-17  Score=105.18  Aligned_cols=71  Identities=15%  Similarity=0.277  Sum_probs=58.5

Q ss_pred             cCCchhcccCccccHHHhhCC-CCCCCHhhHHHhHHHHHhhhccCCCccccceeeecc---ccCCCCCCCHHHHhhcccc
Q 045881           38 KQGCEYVFTAFPYCLEFLTGL-YYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAM---VRGTQPPLLASRIQQLPIT  113 (130)
Q Consensus        38 ~~~C~~v~~~L~pC~~yv~g~-~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~---~~~~~~~in~~ra~~LP~~  113 (130)
                      ..+|+++...|.||++|++++ ...||++||+++|+         .|+  .|+|.+..   +.++  +||.++|++||++
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~---------~~~--~ClC~~~~~~~~~~~--gin~~~A~~LP~~   68 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH---------ADF--ACLCGYKNSPWLGSF--GVDPELASALPKQ   68 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT---------CCH--HHHHTTTTCHHHHHH--TBCHHHHHHHHHH
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh---------cCc--CCcCcccCCcchhhc--CcCHHHHHHHHHH
Confidence            367999999999999999974 46899999999987         154  57776543   4455  6999999999999


Q ss_pred             CCCCCCCC
Q 045881          114 CNTSLSFP  121 (130)
Q Consensus       114 Cgv~~p~~  121 (130)
                      ||+++||.
T Consensus        69 Cgv~~p~~   76 (77)
T 2rkn_A           69 CGLANAPT   76 (77)
T ss_dssp             TTCSCCCC
T ss_pred             cCCCCCCC
Confidence            99998874

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.31  E-value=1.5e-13  Score=88.01  Aligned_cols=59  Identities=15%  Similarity=0.439  Sum_probs=47.3

Q ss_pred             cCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCcccccee--eeccccCCCCCCCHHHHhhccccCCCCCC
Q 045881           46 TAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYC--IEAMVRGTQPPLLASRIQQLPITCNTSLS  119 (130)
Q Consensus        46 ~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~C--l~~~~~~~~~~in~~ra~~LP~~Cgv~~p  119 (130)
                      +.|.||++|++++. .||++||+++|+.            ..|+|  +++.  .+..+||.++|++||++|||++|
T Consensus         5 ~~L~pC~~~v~~~~-~Ps~~CC~~lk~~------------~~ClC~~~k~~--~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSGA-KPSGECCGNLRAQ------------QGCFCQYAKDP--TYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTCC-CCCHHHHHHHHHH------------SSHHHHGGGCS--TTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCCC-CCCHHHHHhhCCC------------CCCCCccccCc--ccccccCHHHHHHHHHHcCCCCC
Confidence            57899999999864 6999999999872            24777  5553  23236999999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.28  E-value=2.2e-13  Score=87.63  Aligned_cols=59  Identities=15%  Similarity=0.440  Sum_probs=47.2

Q ss_pred             cCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCcccccee--eeccccCCCCCCCHHHHhhccccCCCCCC
Q 045881           46 TAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYC--IEAMVRGTQPPLLASRIQQLPITCNTSLS  119 (130)
Q Consensus        46 ~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~C--l~~~~~~~~~~in~~ra~~LP~~Cgv~~p  119 (130)
                      +.|.||++|++++. .||++||+++|+.            ..|+|  +++..  +..+||.++|++||++|||++|
T Consensus         6 ~~L~pC~~~v~~~~-~Ps~~CC~~lk~~------------~~ClC~~~k~~~--~~~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIAGGA-RPTAACCSSLRAQ------------QGCFCQFAKDPR--YGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHTTCC-STTHHHHHHHHHH------------HHHHHHHTTCSS--HHHHTTTTTGGGCCCCCSSCSC
T ss_pred             hhcccCHHHHcCCC-CCCHHHHHhhCCC------------CCCCCccccCcc--cccccCHHHHHHHHHHcCCCCC
Confidence            57999999999865 6999999999873            14777  55532  2236999999999999999875

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=89.70  E-value=0.019  Score=47.47  Aligned_cols=53  Identities=17%  Similarity=0.552  Sum_probs=31.1

Q ss_pred             HhhHHHhHHHHHhhhccCCC-ccccceeeeccccCC----CCC----CCHHHHhhccccCCCCCC--CCCCC
Q 045881           64 RKCCNHIKKLNMIAKHRKGN-AQRFCYCIEAMVRGT----QPP----LLASRIQQLPITCNTSLS--FPISA  124 (130)
Q Consensus        64 ~~CC~~vk~l~~~a~t~~~d-r~~~C~Cl~~~~~~~----~~~----in~~ra~~LP~~Cgv~~p--~~is~  124 (130)
                      .+||+.++.+.        + .||.|.-++..+...    .-.    .=..+|..||..||+..|  .+|+.
T Consensus       429 ~~cc~~l~~~~--------~~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~~~~  492 (500)
T 3ob4_A          429 ERCCNELNEFE--------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDV  492 (500)
T ss_dssp             HHHHHHHGGGT--------TCHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCCCC-
T ss_pred             HHHHHHHHhCC--------cccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCCccC
Confidence            78999988852        2 344444454332210    000    013559999999999976  55554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	4e-18
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	3e-17

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 71.4 bits (175), Expect = 4e-18
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +A   C+ +  G    PS  CC+ ++ LN  A+    + +  C C++    G   
Sbjct: 4   CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAART-TADRRAACNCLKNAAAG-VS 61

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L A     +P  C  S+ + IS S DCS+
Sbjct: 62  GLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 69.1 bits (169), Expect = 3e-17
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 41  CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQP 100
           C  V +    CL ++ G    PS +CCN ++ L+  A+   G+ Q  C C++ + RG   
Sbjct: 3   CGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQS-SGDRQTVCNCLKGIARG-IH 59

Query: 101 PLLASRIQQLPITCNTSLSFPISASMDCSQ 130
            L  +    +P  CN ++ + IS  +DCS+
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSR 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.95
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.94
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.5
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.45
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	85.46
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	84.55

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.95  E-value=3.6e-30  Score=173.90  Aligned_cols=91  Identities=29%  Similarity=0.603  Sum_probs=83.9

Q ss_pred             cCCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCC
Q 045881           38 KQGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTS  117 (130)
Q Consensus        38 ~~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~  117 (130)
                      +++|+++...|.||++||+|+++.|++.||+++++|+++++|+. |||++|+|++..+..+ .+||.+|+.+||++||++
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~-dr~~lC~cl~~~~~~~-~~in~~ra~~LP~~C~v~   78 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTA-DRRAACNCLKNAAAGV-SGLNAGNAASIPSKCGVS   78 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHH-HHHHHHHHHHHHHHTC-TTCCHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCc-cHHHHHHhhhhccccc-CCcCHHHHHhhhHhcCCC
Confidence            37899999999999999999888899999999999999998875 9999999998876655 379999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 045881          118 LSFPISASMDCSQ  130 (130)
Q Consensus       118 ~p~~is~~~dC~~  130 (130)
                      +||||++++||++
T Consensus        79 l~~pis~~~dCs~   91 (93)
T d1fk5a_          79 IPYTISTSTDCSR   91 (93)
T ss_dssp             CSSCCSTTCCGGG
T ss_pred             CCCCCCCCCCCCc
Confidence            9999999999985

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.94  E-value=2.8e-29  Score=168.96  Aligned_cols=89  Identities=29%  Similarity=0.655  Sum_probs=81.4

Q ss_pred             CCchhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCC
Q 045881           39 QGCEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSL  118 (130)
Q Consensus        39 ~~C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~  118 (130)
                      ++|+++...|.||++|++++. +|++.||+++++|+++++|+. |||++|+|+++.+..+ .+||.+||.+||++|||++
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~~-~P~~~CC~gv~~L~~~a~t~~-d~~~lC~cl~~~~~~~-~~in~~ra~~LP~~C~v~~   77 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGGP-GPSGECCNGVRDLHNQAQSSG-DRQTVCNCLKGIARGI-HNLNLNNAASIPSKCNVNV   77 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCS-CCCHHHHHHHHHHHHHCCSHH-HHHHHHHHHHHHHHTC-TTCCHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHhhHHHHcCCC-CCCcchhhhHHHHHHHhcCCC-cHHHHHHhhhhhcccC-CCcCHHHHHhchHhcCCCC
Confidence            479999999999999999864 799999999999999999875 9999999999876665 4799999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045881          119 SFPISASMDCSQ  130 (130)
Q Consensus       119 p~~is~~~dC~~  130 (130)
                      |||||+++||++
T Consensus        78 p~pis~~~dC~~   89 (91)
T d1mida_          78 PYTISPDIDCSR   89 (91)
T ss_dssp             CSCCCTTCCGGG
T ss_pred             CCCCCCCCCCCC
Confidence            999999999985

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.50  E-value=6.1e-09  Score=64.95  Aligned_cols=61  Identities=15%  Similarity=0.375  Sum_probs=48.5

Q ss_pred             cCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCCC
Q 045881           46 TAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLS  119 (130)
Q Consensus        46 ~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~p  119 (130)
                      ..|.||++.++++. .||++||+.+|+          ++.++|..+++.  .+...||..+|..+-..|||++|
T Consensus         5 ~~L~~C~~Ai~~g~-~PS~~CC~kLke----------Q~~ClC~Y~kdP--~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           5 SQLAVCASAILSGA-KPSGECCGNLRA----------QQGCFCQYAKDP--TYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             GGGGGGHHHHHHCC-CCCHHHHHHHHH----------HGGGHHHHTTCT--TTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             hhccccHHHHhcCC-CCcHHHHHHHHh----------cCCccceecCCc--cHHHHcCCHHHHHHHHhcCCCCC
Confidence            35999999999866 799999999888          334556556653  44446899999999999999876

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.45  E-value=6.8e-09  Score=65.05  Aligned_cols=64  Identities=16%  Similarity=0.415  Sum_probs=49.8

Q ss_pred             chhcccCccccHHHhhCCCCCCCHhhHHHhHHHHHhhhccCCCccccceeeeccccCCCCCCCHHHHhhccccCCCCCC
Q 045881           41 CEYVFTAFPYCLEFLTGLYYKPSRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGTQPPLLASRIQQLPITCNTSLS  119 (130)
Q Consensus        41 C~~v~~~L~pC~~yv~g~~~~Ps~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~~~~in~~ra~~LP~~Cgv~~p  119 (130)
                      |+.  ..|.||++.++++. .||++||+.+|+          ++.++|..+++.  .+...||..++..+-..|||++|
T Consensus         3 C~p--~~L~~C~~ai~~g~-~PS~~CC~kLke----------Q~~ClC~Y~k~P--~~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           3 CNA--GQLTVCTGAIAGGA-RPTAACCSSLRA----------QQGCFCQFAKDP--RYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             STT--TTHHHHHHHHTTCC-STTHHHHHHHHH----------HHHHHHHHTTCS--SHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCh--hhccccHHHHhCCC-CCcHHHHHHHHh----------cCCccceeccCc--cHHHHcCCHHHHHHHHhcCCCCC
Confidence            654  36999999999876 699999999888          334556656653  34336899999999999999876

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=85.46  E-value=0.36  Score=31.08  Aligned_cols=71  Identities=24%  Similarity=0.411  Sum_probs=43.4

Q ss_pred             cCCchh---cccCccccHHHhhCC-----CCC------C-CHhhHHHhHHHHHhhhccCCCccccceeeeccccCC-CC-
Q 045881           38 KQGCEY---VFTAFPYCLEFLTGL-----YYK------P-SRKCCNHIKKLNMIAKHRKGNAQRFCYCIEAMVRGT-QP-  100 (130)
Q Consensus        38 ~~~C~~---v~~~L~pC~~yv~g~-----~~~------P-s~~CC~~vk~l~~~a~t~~~dr~~~C~Cl~~~~~~~-~~-  100 (130)
                      ...|..   -...|..|..|+...     ...      + =..||+.++.+         |.+|.|.=|+..+..- .. 
T Consensus         8 ~q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~---------~~~CrC~~L~~avq~q~~q~   78 (103)
T d1s6da_           8 ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---------DEKCMCPAIMMMLNEPMWIR   78 (103)
T ss_dssp             SSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---------CGGGSSHHHHHHTTSTTCSS
T ss_pred             cccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcC---------CCCCcCHHHHHHHHHHHhHH
Confidence            356773   234699999999632     111      2 27799999995         4554554454433221 00 


Q ss_pred             CC--CHHHHhhccccCCCC
Q 045881          101 PL--LASRIQQLPITCNTS  117 (130)
Q Consensus       101 ~i--n~~ra~~LP~~Cgv~  117 (130)
                      .+  -+..|.+||+.||+.
T Consensus        79 ~~~~~~q~Ak~LPs~C~i~   97 (103)
T d1s6da_          79 MRDQVMSMAHNLPIECNLM   97 (103)
T ss_dssp             THHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhChHhcCCC
Confidence            11  147899999999986