Citrus Sinensis ID: 045886

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRKFRN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEEHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDLVGLIAVNlsrnnltgpitpkigeltsldfldlsrnlfsgsipsslsqlsglgvldlsynnssgkiplgtqlqsfnasvyagnlelcglplanmcpdeestpspgtdddsdtlededdqFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRKFRN
Flexible Loop (DISEMBL)
MDLVGLIAVNlsrnnltgpitpkiGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAklqrkfrn
Low Complexity Region (SEG)
MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNlfsgsipsslsqlsglgvldlsYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEEstpspgtdddsdtlededdQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRKFRN
Disordered region (IsUnstruct)
**LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANM************************QFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKL******
Disordered Region (DISOPRED)
MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLAN************************DQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRKFR*
Disordered Region (DISEMBL)
MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPD***************LEDEDDQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRKFRN
Disordered Region (DISPRO)
*DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMC**********************DQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRKF**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRKFRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
C0LGE4	882	Probable LRR receptor-lik	no	no	0.608	0.126	0.408	4e-15
Q9SYQ8	980	Receptor protein kinase C	no	no	0.679	0.127	0.363	4e-14
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.554	0.099	0.446	8e-14
C0LGF4	591	LRR receptor-like serine/	no	no	0.809	0.252	0.32	3e-13
Q9C9N5	685	Probable inactive leucine	no	no	0.570	0.153	0.452	8e-13
O49545	1003	Leucine-rich repeat recep	no	no	0.505	0.092	0.457	1e-12
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.434	0.068	0.477	3e-12
C0LGP9	784	Probable leucine-rich rep	no	no	0.570	0.133	0.396	4e-12
Q9SCT4	836	Probably inactive leucine	no	no	0.527	0.116	0.366	6e-12
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.989	0.159	0.288	9e-12

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 3/115 (2%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           ++L  +  ++L RN L G I P++G L+ + FLDLS+N  SG IPSSL  L+ L   ++S
Sbjct: 401 LNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVS 460

Query: 61  YNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTL 115
           YNN SG IP    +Q+F +S ++ N  LCG PL   C    S  +     +SD L
Sbjct: 461 YNNLSGVIPPVPMIQAFGSSAFSNNPFLCGDPLVTPC---NSRGAAAKSRNSDAL 512

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 7/132 (5%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
           LI+V+LSRN + G I   I  + +L  L++S N  +GSIP+ +  ++ L  LDLS+N+ S
Sbjct: 530 LISVDLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLS 589

Query: 66  GKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQFITL 125
           G++PLG Q   FN + +AGN  LC LP    CP   + P   +D +   L       IT+
Sbjct: 590 GRVPLGGQFLVFNETSFAGNTYLC-LPHRVSCP---TRPGQTSDHNHTALFSPSRIVITV 645

Query: 126 GFYVSSILGFFV 137
              +++I G  +
Sbjct: 646 ---IAAITGLIL 654

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           DL  L  +NL  NNL+G I   +  +TSL+ LDLS N  SG+IP SL +LS L    ++Y
Sbjct: 555 DLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAY 614

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTP 104
           N  SG IP G Q Q+F  S + GN  LCG   A+ C   + +P
Sbjct: 615 NKLSGPIPTGVQFQTFPNSSFEGNQGLCG-EHASPCHITDQSP 656

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +   L  ++L  N  TGPI  ++G+L  L  LD+S N  SG IP+SL QL  L   ++S 
Sbjct: 120 NCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSN 179

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQ 121
           N   G+IP    L  F+ + + GNL LCG  +  +C D+   PS  +    +  ++    
Sbjct: 180 NFLVGQIPSDGVLSGFSKNSFIGNLNLCGKHVDVVCQDDSGNPSSHSQSGQNQKKNSGKL 239

Query: 122 FITLGFYVSSILGF-FVGFWGVCGYLMLNR 150
            I+    V ++L    + FWG   Y  L +
Sbjct: 240 LISASATVGALLLVALMCFWGCFLYKKLGK 269

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLD-FLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +LV L  +NLS N LTG I   +G L +L   LDLS N FSG IP+SL  L  L  +DLS
Sbjct: 185 NLVHLRTLNLSFNRLTGTIPEDVGSLENLKGTLDLSHNFFSGMIPTSLGNLPELLYVDLS 244

Query: 61  YNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSP 106
           YNN SG IP    L +   + + GN  LCGLP+   C    +   P
Sbjct: 245 YNNLSGPIPKFNVLLNAGPNAFQGNPFLCGLPIKISCSTRNTQVVP 290

Arabidopsis thaliana (taxid: 3702)

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
           L  V+LSRN L+G I  +I  +  L++L+LSRN   GSIP S+S +  L  LD SYNN S
Sbjct: 529 LTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQSLTSLDFSYNNLS 588

Query: 66  GKIPLGTQLQSFNASVYAGNLELCGLPLANMCPD 99
           G +P   Q   FN + + GN +LCG P    C D
Sbjct: 589 GLVPGTGQFSYFNYTSFLGNPDLCG-PYLGPCKD 621

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 51/88 (57%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
           L  +NL  N +TG I    G L ++  LDLS N   G +P SL  LS L  LD+S NN +
Sbjct: 665 LQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLT 724

Query: 66  GKIPLGTQLQSFNASVYAGNLELCGLPL 93
           G IP G QL +F  S YA N  LCG+PL
Sbjct: 725 GPIPFGGQLTTFPVSRYANNSGLCGVPL 752

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 6/111 (5%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  +++S N+++G I   +G ++SL  LDLS+N  +G IP S+S L  L   ++SY
Sbjct: 292 KLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPISISDLESLNFFNVSY 351

Query: 62  NNSSGKIPLGTQL-QSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDD 111
           NN SG +P  T L Q FN+S + GN  LCG  ++  CP   + PSP  + +
Sbjct: 352 NNLSGPVP--TLLSQKFNSSSFVGNSLLCGYSVSTPCP---TLPSPSPEKE 397

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 23/120 (19%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  L+++NL  N+L GPI   I  L +L  L+L RN  +G IP ++  +SG+  LDLS 
Sbjct: 309 NLSSLVSLNLESNHLKGPIPDAIDRLHNLTELNLKRNKINGPIPETIGNISGIKKLDLSE 368

Query: 62  NNSSGKIPLG----TQLQS-------------------FNASVYAGNLELCGLPLANMCP 98
           NN +G IPL      +L S                   FN+S + GN++LCG   +N CP
Sbjct: 369 NNFTGPIPLSLVHLAKLSSFNVSYNTLSGPVPPVLSKKFNSSSFLGNIQLCGYSSSNPCP 428

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 12/194 (6%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +++ L  + LS N L+G I   IG+L +L   D S N   G IP S S LS L  +DLS 
Sbjct: 633 EMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSN 692

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDD----DSDTLED 117
           N  +G IP   QL +  A+ YA N  LCG+PL   C +  +    GT++       T   
Sbjct: 693 NELTGPIPQRGQLSTLPATQYANNPGLCGVPLPE-CKNGNNQLPAGTEEGKRAKHGTRAA 751

Query: 118 EDDQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKD---WVYVIS--- 171
                I LG  +S+     +  W +        +      + L  +     W        
Sbjct: 752 SWANSIVLGVLISAASVCILIVWAIAVRARRRDADDAKMLHSLQAVNSATTWKIEKEKEP 811

Query: 172 -AVNIAKLQRKFRN 184
            ++N+A  QR+ R 
Sbjct: 812 LSINVATFQRQLRK 825

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.972	0.174	0.554	1e-47
359490164	1198	PREDICTED: LRR receptor-like serine/thre	0.972	0.149	0.538	3e-47
147855809	1107	hypothetical protein VITISV_029207 [Viti	0.961	0.159	0.554	5e-46
224125666	938	predicted protein [Populus trichocarpa]	0.989	0.194	0.546	6e-45
356561472	2412	PREDICTED: uncharacterized protein LOC10	0.951	0.072	0.505	6e-45
356561480	1130	PREDICTED: LRR receptor-like serine/thre	0.951	0.154	0.511	1e-44
147834202	1270	hypothetical protein VITISV_011552 [Viti	0.951	0.137	0.553	2e-44
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.983	0.186	0.516	2e-44
302143722	750	unnamed protein product [Vitis vinifera]	0.961	0.236	0.524	3e-44
359490560	1010	PREDICTED: LRR receptor-like serine/thre	0.961	0.175	0.524	5e-44

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 126/184 (68%), Gaps = 5/184 (2%)

Query: 1    MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
            +DLV L+++NLSRNNLT  I  +IG+L SL+ LDLS+N   G IP+SL ++S L VLDLS
Sbjct: 844  IDLVELVSLNLSRNNLTRLIPARIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLS 903

Query: 61   YNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMC-PDEESTPSPGTDDDSDTLEDED 119
             NN SGKIP GTQLQSFN   Y GN  LCGLPL   C  D+    SP  + +    +D +
Sbjct: 904  DNNLSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCFEDKIKQDSPTHNIEDKIQQDGN 963

Query: 120  DQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQ 179
            D +    FYVS  LGF VGFWGVCG L+LN SW Y YF FL  +KDW+YVI A+N+A+LQ
Sbjct: 964  DMW----FYVSVALGFIVGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYVIIAINMARLQ 1019

Query: 180  RKFR 183
            R  +
Sbjct: 1020 RSLQ 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490164|ref|XP_002268910.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/184 (53%), Positives = 128/184 (69%), Gaps = 5/184 (2%)

Query: 1    MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
            +DL+ L+++NLSRNNLT  I  +IG+L SL+ LDLS+N   G IP+SL ++S L VLDLS
Sbjct: 1018 IDLIELVSLNLSRNNLTRLIPTRIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLS 1077

Query: 61   YNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEE-STPSPGTDDDSDTLEDED 119
             NN SGKIP GTQLQSFN   Y GN  LCGLPL   C +++    SP  + +    +D +
Sbjct: 1078 DNNLSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCSEDKIKQGSPTYNIEDKIQQDGN 1137

Query: 120  DQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQ 179
            D +    FY+S  LGF VGFWGVCG L+LN SW Y YF FL  +KDW+Y+I A+N+A+LQ
Sbjct: 1138 DMW----FYISVALGFIVGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYMIIAINMARLQ 1193

Query: 180  RKFR 183
            R F+
Sbjct: 1194 RSFQ 1197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855809|emb|CAN79130.1| hypothetical protein VITISV_029207 [Vitis vinifera]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 124/182 (68%), Gaps = 5/182 (2%)

Query: 2    DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            DL+ L+++NLSRNNLTG I   IG+L SL+ LDLS+N   G IP+SLS++S L VLDLS 
Sbjct: 928  DLLELVSLNLSRNNLTGLIPTTIGQLKSLEILDLSQNELFGEIPTSLSEISLLSVLDLSN 987

Query: 62   NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCP-DEESTPSPGTDDDSDTLEDEDD 120
            NN SGKIP GTQLQSFN+  Y GN  LCGLPL   CP DE    SP    +    +D +D
Sbjct: 988  NNLSGKIPKGTQLQSFNSYSYKGNPTLCGLPLLKKCPEDEMKQDSPTRSIEDKIQQDGND 1047

Query: 121  QFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQR 180
             +    FY+S  LGF VGFWGVCG L+LN S  Y YF+FL  +KDW YV  A+N+AK++R
Sbjct: 1048 MW----FYISIALGFIVGFWGVCGTLLLNNSLRYAYFHFLNKIKDWFYVTIAINMAKVRR 1103

Query: 181  KF 182
              
Sbjct: 1104 SL 1105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 100/183 (54%), Positives = 124/183 (67%), Gaps = 1/183 (0%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           + L+ L+A+NLS NNLTG I  KIG+L  L+ LDLS N  SG IPSS + LS L  L+LS
Sbjct: 753 ISLLQLVAMNLSGNNLTGGIPLKIGQLKQLESLDLSGNQLSGVIPSSTASLSFLSYLNLS 812

Query: 61  YNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDD 120
           YNN SGKIP GTQLQSFNAS +AGNL LCGLP+ + CP +E+TP P  +DD+   E   D
Sbjct: 813 YNNLSGKIPSGTQLQSFNASAFAGNLALCGLPVTHKCPGDEATPRPLANDDNQGNETVVD 872

Query: 121 QFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQR 180
           +F    FY +  +GF V FWGV G L+L RSW + YF FL    DW+YV  AV  A+LQ 
Sbjct: 873 EFRRW-FYTALGIGFGVFFWGVSGALLLKRSWRHAYFRFLDEAWDWIYVKIAVQKARLQH 931

Query: 181 KFR 183
            ++
Sbjct: 932 IYQ 934

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561472|ref|XP_003549005.1| PREDICTED: uncharacterized protein LOC100789964 [Glycine max]

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 123/180 (68%), Gaps = 5/180 (2%)

Query: 2    DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            +L GL+++NLSRN+LTG I   IG+LTSLDFLDLSRN   GSIP SL+Q+  LG+LDLS+
Sbjct: 2237 NLFGLVSLNLSRNHLTGKIPSNIGKLTSLDFLDLSRNHLVGSIPLSLTQIDRLGMLDLSH 2296

Query: 62   NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQ 121
            NN SG+IP GTQLQSFNAS Y  NL+LCG PL  +C D +    P        L ++++ 
Sbjct: 2297 NNLSGEIPTGTQLQSFNASCYEDNLDLCGPPLEKLCIDGKPAQEPIVK-----LPEDENL 2351

Query: 122  FITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRK 181
              T  FY+S  +GF + FWGV G +++NRSW + YF F++   D +YV++AV + K   +
Sbjct: 2352 LFTREFYMSMAIGFVISFWGVFGSILINRSWRHAYFKFISNFSDAIYVMAAVKVFKWHHR 2411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561480|ref|XP_003549009.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 123/180 (68%), Gaps = 5/180 (2%)

Query: 2    DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            DL GL+++NLSRN+LTG I   IG+LT LDFLDLSRN   GSIP SL+Q+  LGVLDLS+
Sbjct: 955  DLFGLVSLNLSRNHLTGAIPSNIGKLTLLDFLDLSRNHLIGSIPWSLTQIDRLGVLDLSH 1014

Query: 62   NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQ 121
            NN SG+IP GTQLQSFNAS Y  NL+LCG PL  +C D +    P        L ++++ 
Sbjct: 1015 NNLSGEIPTGTQLQSFNASCYEDNLDLCGPPLEKLCIDGKPAQEPIV-----KLPEDENL 1069

Query: 122  FITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRK 181
              T  FY+S  +GF + FWGV G +++NRSW + YF F++ + D +YV+ AV + K + +
Sbjct: 1070 LFTREFYMSMAIGFVISFWGVFGSILMNRSWRHAYFKFISNLSDAIYVMVAVKVFKWRHR 1129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834202|emb|CAN64227.1| hypothetical protein VITISV_011552 [Vitis vinifera]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 120/177 (67%), Gaps = 2/177 (1%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           DLV L+++NLSRN L GPI   IG+L SLD LDLSRN   G IP SLSQ++ L VLDLS 
Sbjct: 715 DLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRLHGGIPXSLSQIARLSVLDLSD 774

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQ 121
           N  SGKIP GTQLQSFNAS Y GN  LCG PL   C ++E+     T   ++  ED  D 
Sbjct: 775 NILSGKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQEDENREVSFTGLSNE--EDIQDD 832

Query: 122 FITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKL 178
              + FY + +LGF +GFWGVCG L+LN SW Y YF FL+ +KDW+YV + VN+ K+
Sbjct: 833 ANNIWFYGNIVLGFIIGFWGVCGTLLLNSSWRYAYFQFLSKIKDWLYVTTTVNMNKI 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 121/182 (66%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           DLV L+++NLSRNNL G I   IG+L  LD LDLS+N  +G IP +LSQ++ L VLDLS 
Sbjct: 790 DLVELVSLNLSRNNLIGSIPTTIGQLKLLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSN 849

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQ 121
           N  SGKIPLGTQLQSF+AS Y GN  LCG PL   CP++E      T   S   ED  D 
Sbjct: 850 NTLSGKIPLGTQLQSFDASTYEGNPGLCGPPLLIRCPEDELGGVSFTSGLSSKKEDIQDD 909

Query: 122 FITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQRK 181
              + FY + +LGF +GFWGVCG L+ N SW Y YF  L+ +KDW+Y+ + VN+ +++R 
Sbjct: 910 ANNIWFYGNIVLGFIIGFWGVCGTLLFNSSWRYAYFQLLSKIKDWLYMTTIVNMNRIRRS 969

Query: 182 FR 183
            +
Sbjct: 970 LQ 971

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143722|emb|CBI22583.3| unnamed protein product [Vitis vinifera]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/183 (52%), Positives = 124/183 (67%), Gaps = 6/183 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           DLV L+++NLS+NNL G I   IG+L SLDFLDLS+N   G IP SLSQ++GL VLDLS 
Sbjct: 572 DLVELLSLNLSKNNLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSD 631

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTD--DDSDTLEDED 119
           N  SGKIP GTQL SFNAS Y GN  LCG PL   C ++E+     T   ++ D  +D +
Sbjct: 632 NILSGKIPSGTQLHSFNASTYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTN 691

Query: 120 DQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQ 179
           +    + FY + +LGF +GFWGVCG L+LNRSW Y YF  L  +KDW+++ +  NI +L+
Sbjct: 692 N----IWFYGNIVLGFIIGFWGVCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLR 747

Query: 180 RKF 182
           R F
Sbjct: 748 RSF 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490560|ref|XP_002266431.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/183 (52%), Positives = 124/183 (67%), Gaps = 6/183 (3%)

Query: 2    DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            DLV L+++NLS+NNL G I   IG+L SLDFLDLS+N   G IP SLSQ++GL VLDLS 
Sbjct: 832  DLVELLSLNLSKNNLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSD 891

Query: 62   NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTD--DDSDTLEDED 119
            N  SGKIP GTQL SFNAS Y GN  LCG PL   C ++E+     T   ++ D  +D +
Sbjct: 892  NILSGKIPSGTQLHSFNASTYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTN 951

Query: 120  DQFITLGFYVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVISAVNIAKLQ 179
            +    + FY + +LGF +GFWGVCG L+LNRSW Y YF  L  +KDW+++ +  NI +L+
Sbjct: 952  N----IWFYGNIVLGFIIGFWGVCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLR 1007

Query: 180  RKF 182
            R F
Sbjct: 1008 RSF 1010

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.521	0.107	0.395	3.8e-11
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.521	0.132	0.385	9.7e-11
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.516	0.117	0.378	5e-10
TAIR|locus:2034725	882	AT1G12460 [Arabidopsis thalian	0.527	0.109	0.340	5.6e-10
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.516	0.106	0.368	9.2e-10
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.527	0.144	0.371	1e-09
TAIR|locus:2046500	218	RLP25 "receptor like protein 2	0.516	0.435	0.357	1.1e-09
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.902	0.186	0.298	1.2e-09
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.521	0.088	0.375	1.2e-09
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.804	0.162	0.290	3.2e-09

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 38/96 (39%), Positives = 47/96 (48%)

Query:     6 LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYNNSS 65
             LI +N+S N  TG I P +  L++L  LDLS+N                      YN   
Sbjct:   739 LIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLE 798

Query:    66 GKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEE 101
             G IP GTQ+QS N+S +A N  LCG PL   C  EE
Sbjct:   799 GPIPQGTQIQSQNSSSFAENPGLCGAPLQKKCGGEE 834

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 37/96 (38%), Positives = 46/96 (47%)

Query:     6 LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYNNSS 65
             LI +N+S N  TG I P +  L++L  LDLS+N                      YN   
Sbjct:   581 LIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPPELGKLTFLEWMNFSYNRLE 640

Query:    66 GKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEE 101
             G IP  TQ+QS N+S +A N  LCG P  N C  EE
Sbjct:   641 GPIPQATQIQSQNSSSFAENPGLCGAPFLNKCGGEE 676

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 36/95 (37%), Positives = 45/95 (47%)

Query:     3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYN 62
             L  LIA+NLS N  TG I   +  +T L+ LDLSRN                      +N
Sbjct:   625 LKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHN 684

Query:    63 NSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMC 97
                G+IP GTQ+   + S + GN  LCGLPL   C
Sbjct:   685 QLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSC 719

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2034725 AT1G12460 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 33/97 (34%), Positives = 48/97 (49%)

Query:     1 MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXX 60
             ++L  +  ++L RN L G I P++G L+ + FLDLS+N                      
Sbjct:   401 LNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVS 460

Query:    61 YNNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMC 97
             YNN SG IP    +Q+F +S ++ N  LCG PL   C
Sbjct:   461 YNNLSGVIPPVPMIQAFGSSAFSNNPFLCGDPLVTPC 497

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 9.2e-10, P = 9.2e-10
 Identities = 35/95 (36%), Positives = 46/95 (48%)

Query:     3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYN 62
             L  LIAVN+S N  TG I   +  L +L+ LD+SRN                      +N
Sbjct:   723 LKALIAVNISNNAFTGHIPLSMANLENLESLDMSRNQLSGTIPNGLGSISFLAYINVSHN 782

Query:    63 NSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMC 97
               +G+IP GTQ+   + S + GN  LCGLPL   C
Sbjct:   783 QLTGEIPQGTQITGQSKSSFEGNAGLCGLPLKESC 817

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 36/97 (37%), Positives = 44/97 (45%)

Query:     3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYN 62
             L  LIA+NLS N  TG I   +  L  L  LD+SRN                      +N
Sbjct:   512 LKALIALNLSNNAFTGHIPQSLANLKELQSLDMSRNQLSGTIPNGLKQLSFLAYISVSHN 571

Query:    63 NSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPD 99
                G+IP GTQ+     S + GN+ LCGLPL   C D
Sbjct:   572 QLKGEIPQGTQITGQLKSSFEGNVGLCGLPLEERCFD 608

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046500 RLP25 "receptor like protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 34/95 (35%), Positives = 42/95 (44%)

Query:     3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYN 62
             L  LIA+NLS N   G I   +  L  L+ LD+SRN                      +N
Sbjct:    58 LKALIALNLSNNAFIGNIPMSMANLIELESLDMSRNGLSGTIPQGLKTLSFLGYINVSHN 117

Query:    63 NSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMC 97
                G+IP GTQ+     S + GN  LCGLPL   C
Sbjct:   118 QLKGEIPQGTQITGPPKSSFEGNAGLCGLPLEESC 152

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 51/171 (29%), Positives = 69/171 (40%)

Query:     2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXY 61
             DL  + ++NLSRN+L+G I      L S++ LDLS N                      Y
Sbjct:   724 DLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSY 783

Query:    62 NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEEXXXXXXXXXXXXXXXXXXXQ 121
             NN SG IP G Q  +F    Y GN  LCG P    C                        
Sbjct:   784 NNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVV 843

Query:   122 -FITLGF-YVSSILGFFVGFWGVCGYLMLNRSWSYGYFNFLTGMKDWVYVI 170
              + +LG  YV+ ++GF V F  +C      R+W      F+  +KD + VI
Sbjct:   844 LWWSLGTTYVTVMMGFLV-F--LCFDSPWRRAWFCLVDTFIDRVKDVLGVI 891

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 36/96 (37%), Positives = 44/96 (45%)

Query:     2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXY 61
             DL  + ++NLS N LTG I   I +L  L+ LDLS N                      Y
Sbjct:   906 DLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISY 965

Query:    62 NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMC 97
             NN SG+IP    L +F+   Y GN  LCGLP    C
Sbjct:   966 NNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNC 1001

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 45/155 (29%), Positives = 60/155 (38%)

Query:     2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXY 61
             DL  L A+NLS N L+  I     +L  ++ LDLS N                      Y
Sbjct:   741 DLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSY 800

Query:    62 NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCP----DEEXXXXXXXXXXXXXXXX 117
             NN SG IP G Q  +F+ + Y GN  LCG P    C      EE                
Sbjct:   801 NNLSGIIPQGKQFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDM 860

Query:   118 XXXQFITLGFYVSSILGFFVGFWGVCGYLMLNRSW 152
                 + T G YV++++G  V     C +    R+W
Sbjct:   861 LVFYWSTAGTYVTALIGILVLMCVDCSW---RRAW 892

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 9e-17
 Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 8/92 (8%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
           L ++NLS N++ G I P +G +TSL+ LDLS N F+GSIP SL QL+ L +L+L+ N+ S
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 66  GKIP--LGTQL---QSFNASVYAGNLELCGLP 92
           G++P  LG +L    SFN +  AG   LCG+P
Sbjct: 504 GRVPAALGGRLLHRASFNFTDNAG---LCGIP 532

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
           L++++LS N L+G I     E+  L  LDLS+N  SG IP +L  +  L  +++S+N+  
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 66  GKIPLGTQLQSFNASVYAGNLELCG 90
           G +P      + NAS  AGN++LCG
Sbjct: 585 GSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  ++L  NNLTGPI   +G L +L +L L +N  SG IP S+  L  L  LDLS N
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 63  NSSGKIP-LGTQLQS 76
           + SG+IP L  QLQ+
Sbjct: 295 SLSGEIPELVIQLQN 309

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 9   VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           +NLS NN TG I P+ G + +L+ LDLS N+ SG IP+ +   S L VLDL  N   GKI
Sbjct: 123 LNLSNNNFTGSI-PR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 69  PLG-TQLQSFNASVYAGNLELCGLP 92
           P   T L S      A N  +  +P
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 32/70 (45%), Positives = 40/70 (57%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  L  + L +N L+GPI P I  L  L  LDLS N  SG IP  + QL  L +L L  
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Query: 62  NNSSGKIPLG 71
           NN +GKIP+ 
Sbjct: 318 NNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 31/59 (52%), Positives = 35/59 (59%)

Query: 11  LSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
           L  NNL+G I  +IG LTSL+ LDL  N  +G IPSSL  L  L  L L  N  SG IP
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 9   VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           ++L  N L G I   +  LTSL+FL L+ N   G IP  L Q+  L  + L YNN SG+I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 69  P--LGTQLQSFN 78
           P  +G  L S N
Sbjct: 229 PYEIG-GLTSLN 239

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 29/63 (46%), Positives = 37/63 (58%)

Query: 9   VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           ++LSRN  +G +  K+G L+ L  L LS N  SG IP  LS    L  LDLS+N  SG+I
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 69  PLG 71
           P  
Sbjct: 540 PAS 542

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 7e-09
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           +  L  ++LS N L+G I   IG  +SL  LDL  N+  G IP+SL+ L+ L  L L+ N
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 63  NSSGKIP 69
              G+IP
Sbjct: 199 QLVGQIP 205

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 8   AVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK 67
            + L    L G I   I +L  L  ++LS N   G+IP SL  ++ L VLDLSYN+ +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 68  IP--LG--TQLQSFN 78
           IP  LG  T L+  N
Sbjct: 482 IPESLGQLTSLRILN 496

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 27/68 (39%), Positives = 39/68 (57%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  L  + L+ N L G I  ++G++ SL ++ L  N  SG IP  +  L+ L  LDL Y
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 62  NNSSGKIP 69
           NN +G IP
Sbjct: 246 NNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 9   VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           +++S NNL G I  +  ++ SL  L L+RN F G +P S      L  LDLS N  SG +
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAV 491

Query: 69  PLGTQLQSFNASVYAGNLELCGLPLANMCPDEEST 103
           P     +   +      L+L    L+   PDE S+
Sbjct: 492 P-----RKLGSLSELMQLKLSENKLSGEIPDELSS 521

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  LI+++LS N+L+G I   + +L +L+ L L  N F+G IP +L+ L  L VL L  
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 62  NNSSGKIP--LGTQ 73
           N  SG+IP  LG  
Sbjct: 342 NKFSGEIPKNLGKH 355

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           D+  L  ++L+RN   G + P       L+ LDLSRN FSG++P  L  LS L  L LS 
Sbjct: 450 DMPSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 62  NNSSGKIP 69
           N  SG+IP
Sbjct: 509 NKLSGEIP 516

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 29/63 (46%), Positives = 37/63 (58%)

Query: 9   VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           ++L  NN TG I   +  L  L  L L  N FSG IP +L + + L VLDLS NN +G+I
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 69  PLG 71
           P G
Sbjct: 373 PEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLS-GLGVLDLSYNNS 64
           +++++LS  N++G I+  I  L  +  ++LS N  SG IP  +   S  L  L+LS NN 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 65  SGKIPLGT 72
           +G IP G+
Sbjct: 131 TGSIPRGS 138

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 11  LSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           L  N+L G I   +G   SL  + L  N FSG +PS  ++L  +  LD+S NN  G+I
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 9   VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           V L  N+ +G +  +  +L  + FLD+S N   G I S    +  L +L L+ N   G +
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468

Query: 69  P 69
           P
Sbjct: 469 P 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 23/64 (35%), Positives = 31/64 (48%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
           L  + L  N  +G I   +G+  +L  LDLS N  +G IP  L     L  L L  N+  
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 66  GKIP 69
           G+IP
Sbjct: 394 GEIP 397

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PLN03150	623	hypothetical protein; Provisional	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.6
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.38
PLN03150	623	hypothetical protein; Provisional	99.36
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.52
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.51
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.42
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.3
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.27
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.15
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.09
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.68
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.66
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.54
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.51
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.48
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.03
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.0
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.55
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.49
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.33
smart00370	26	LRR Leucine-rich repeats, outliers.	94.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.6
smart00370	26	LRR Leucine-rich repeats, outliers.	94.6
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.58
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.06
PRK15386	426	type III secretion protein GogB; Provisional	93.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.76
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	89.85
PRK15386	426	type III secretion protein GogB; Provisional	89.75
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	88.06
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	87.75
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.96
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	85.71
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.22
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	85.2
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	83.73
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	83.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	81.98
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	80.37

>PLN03150 hypothetical protein; Provisional

Probab=99.73  E-value=1.4e-17  Score=145.67  Aligned_cols=97  Identities=42%  Similarity=0.687  Sum_probs=83.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCcc--ccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGT--QLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~--~l~~l~~   79 (184)
                      +++.|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|++++|+++|.+|...  ....+..
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~  519 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS  519 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence            56889999999999999999999999999999999999999999999999999999999999999999762  2234456


Q ss_pred             ccccCCcCCCCCCCCCCCC
Q 045886           80 SVYAGNLELCGLPLANMCP   98 (184)
Q Consensus        80 ~~~~~N~~lc~~~~~~~C~   98 (184)
                      +++.+|+.+|+.+....|.
T Consensus       520 l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        520 FNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             EEecCCccccCCCCCCCCc
Confidence            7789999999876545563

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.60  E-value=2.8e-15  Score=136.97  Aligned_cols=90  Identities=37%  Similarity=0.600  Sum_probs=66.5

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      ++++|++|+|++|.++|.+|..+..+++|+.|++++|+++|.+|..+..+++|+.+++++|++.|.+|..+.+.++....
T Consensus       521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~  600 (968)
T PLN00113        521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA  600 (968)
T ss_pred             CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence            45667777777777777777777777777777777777777777777777777777777777777777766666676677


Q ss_pred             ccCCcCCCCC
Q 045886           82 YAGNLELCGL   91 (184)
Q Consensus        82 ~~~N~~lc~~   91 (184)
                      +.||+.+|+.
T Consensus       601 ~~~n~~lc~~  610 (968)
T PLN00113        601 VAGNIDLCGG  610 (968)
T ss_pred             hcCCccccCC
Confidence            7788888764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.38  E-value=1.4e-12  Score=119.30  Aligned_cols=91  Identities=37%  Similarity=0.496  Sum_probs=78.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|+.|+|++|++.|.+|..+.++++|+.|++++|.++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+..+
T Consensus       497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            4667888999999999899999999999999999999999999999999999999999999999988876 567778888


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+|+..+..|
T Consensus       577 ~ls~N~l~~~~p  588 (968)
T PLN00113        577 NISHNHLHGSLP  588 (968)
T ss_pred             eccCCcceeeCC
Confidence            898988776444

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=1.4e-12  Score=114.35  Aligned_cols=85  Identities=36%  Similarity=0.495  Sum_probs=79.0

Q ss_pred             CceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccC
Q 045886            6 LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAG   84 (184)
Q Consensus         6 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~   84 (184)
                      ++.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|.. ..+.+|..+++.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            678999999999999999999999999999999999999999999999999999999999999986 6788899999999


Q ss_pred             CcCCCC
Q 045886           85 NLELCG   90 (184)
Q Consensus        85 N~~lc~   90 (184)
                      |...+.
T Consensus       500 N~l~g~  505 (623)
T PLN03150        500 NSLSGR  505 (623)
T ss_pred             Cccccc
Confidence            876553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=3.4e-11  Score=74.10  Aligned_cols=61  Identities=38%  Similarity=0.456  Sum_probs=53.9

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCC
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNS   64 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l   64 (184)
                      ++|+.|++++|+++...+..|..+++|++|++++|.++...|..|..+++|+++++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999944446789999999999999999966667899999999999999975

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.96  E-value=6.9e-11  Score=86.82  Aligned_cols=84  Identities=27%  Similarity=0.428  Sum_probs=67.1

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC-CCCc-cccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK-IPLG-TQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~-~p~~-~~l~~l~~   79 (184)
                      ++.+|+.|++++|+++ .+|.+++.|+.|++|+++-|++. .+|..|+.++.|+.||+.+|+++.. .|.. ..++++..
T Consensus        54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence            4678899999999999 89999999999999999999999 8999999999999999999998754 3332 33445555


Q ss_pred             ccccCCcC
Q 045886           80 SVYAGNLE   87 (184)
Q Consensus        80 ~~~~~N~~   87 (184)
                      ++++.|.+
T Consensus       132 lyl~dndf  139 (264)
T KOG0617|consen  132 LYLGDNDF  139 (264)
T ss_pred             HHhcCCCc
Confidence            55555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.80  E-value=5.7e-09  Score=77.52  Aligned_cols=82  Identities=34%  Similarity=0.341  Sum_probs=37.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccc-cCCCCCCeeeccCCCCCCCCCC--ccccccCCc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSL-SQLSGLGVLDLSYNNSSGKIPL--GTQLQSFNA   79 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~-~~l~~L~~l~ls~N~l~g~~p~--~~~l~~l~~   79 (184)
                      +..|+.|||++|.++ .++ .+..++.|+.|++++|+++ .+++.+ ..+++|+.|++++|++...-.-  ...++.|..
T Consensus        41 l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            567899999999998 564 4778999999999999999 665555 4689999999999999753321  245677888


Q ss_pred             ccccCCcC
Q 045886           80 SVYAGNLE   87 (184)
Q Consensus        80 ~~~~~N~~   87 (184)
                      +++.|||.
T Consensus       118 L~L~~NPv  125 (175)
T PF14580_consen  118 LSLEGNPV  125 (175)
T ss_dssp             EE-TT-GG
T ss_pred             eeccCCcc
Confidence            88999985

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.71  E-value=5.8e-09  Score=85.14  Aligned_cols=93  Identities=28%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .|+.|+.|+|++|++++.-+.+|..+..++.|.|..|+|.-.--..|.++..|+.|+|.+|+++-.-|.. ..+.++..+
T Consensus       272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence            5789999999999999888888999999999999999998444467889999999999999999877765 456677788


Q ss_pred             cccCCcCCCCCCCC
Q 045886           81 VYAGNLELCGLPLA   94 (184)
Q Consensus        81 ~~~~N~~lc~~~~~   94 (184)
                      .+.+||+.|.|.+.
T Consensus       352 ~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  352 NLLSNPFNCNCRLA  365 (498)
T ss_pred             ehccCcccCccchH
Confidence            89999999998654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.63  E-value=4.2e-09  Score=77.52  Aligned_cols=83  Identities=27%  Similarity=0.362  Sum_probs=70.6

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      ++..++.|-||+|.++ .+|+.+..+.+|+.|++++|++. .+|.+++.++.|+.|+++-|++.-.+-..+.+..+..++
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            3566788999999999 89999999999999999999999 999999999999999999999985555556666666666


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +.-|.
T Consensus       109 ltynn  113 (264)
T KOG0617|consen  109 LTYNN  113 (264)
T ss_pred             ccccc
Confidence            55443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.60  E-value=1.6e-08  Score=82.87  Aligned_cols=85  Identities=28%  Similarity=0.371  Sum_probs=70.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcc------------------------cccCCCCCCee
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS------------------------SLSQLSGLGVL   57 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~------------------------~~~~l~~L~~l   57 (184)
                      .++.|..|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|.                        .+..|.+|..|
T Consensus       433 ~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL  510 (565)
T KOG0472|consen  433 QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL  510 (565)
T ss_pred             hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence            4678889999999988 89999999999999999999875 4443                        25677888899


Q ss_pred             eccCCCCCCCCCCccccccCCcccccCCcCC
Q 045886           58 DLSYNNSSGKIPLGTQLQSFNASVYAGNLEL   88 (184)
Q Consensus        58 ~ls~N~l~g~~p~~~~l~~l~~~~~~~N~~l   88 (184)
                      |+.+|.+...+|..+.++++.++.+.|||+-
T Consensus       511 DL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  511 DLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccCCCchhhCChhhccccceeEEEecCCccC
Confidence            9999999877777788889999999999864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.53  E-value=6.9e-08  Score=55.31  Aligned_cols=36  Identities=36%  Similarity=0.593  Sum_probs=22.9

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCC
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFS   41 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~   41 (184)
                      +|++|++++|+|+ .+|+.+++|++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666777777776 56666666666666666666666

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.52  E-value=1.4e-08  Score=83.24  Aligned_cols=83  Identities=25%  Similarity=0.235  Sum_probs=69.0

Q ss_pred             CCcCCceeeeccCCCCCCCCcccC-CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIG-ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~   80 (184)
                      .+..|.+|+++.|+++ .+|.+.. .++++..||+..|+++ +.|+.+.-+.+|+.||+|+|.+++.++..+.+ .+..+
T Consensus       226 gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  226 GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFL  302 (565)
T ss_pred             ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence            3455666666677776 6676644 7899999999999999 99999999999999999999999999887777 77788


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      .+.|||.
T Consensus       303 ~leGNPl  309 (565)
T KOG0472|consen  303 ALEGNPL  309 (565)
T ss_pred             hhcCCch
Confidence            8899984

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.51  E-value=2.1e-08  Score=86.42  Aligned_cols=83  Identities=27%  Similarity=0.261  Sum_probs=53.9

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcc-cccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~-~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      |..|+.||||+|++. ..|..+..-.++-.|+||+|++. .||. -|.+++.|-.||||+|++...+|....+..+..+.
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence            445566666666666 66666555556666666666666 5554 34566777777777777777777666666667777


Q ss_pred             ccCCcC
Q 045886           82 YAGNLE   87 (184)
Q Consensus        82 ~~~N~~   87 (184)
                      +++||.
T Consensus       180 Ls~NPL  185 (1255)
T KOG0444|consen  180 LSNNPL  185 (1255)
T ss_pred             cCCChh
Confidence            777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.45  E-value=7.4e-08  Score=59.02  Aligned_cols=59  Identities=34%  Similarity=0.385  Sum_probs=50.1

Q ss_pred             CCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccCCc
Q 045886           28 TSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAGNL   86 (184)
Q Consensus        28 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~N~   86 (184)
                      ++|+.|++++|+++...+..|..+++|++|++++|+++...|.. ..+..+..+++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57899999999999444468899999999999999999777755 677788888888885

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.42  E-value=1.7e-08  Score=86.22  Aligned_cols=69  Identities=29%  Similarity=0.177  Sum_probs=39.0

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCC------------------------cccccCCCCCCeee
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSI------------------------PSSLSQLSGLGVLD   58 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~------------------------P~~~~~l~~L~~l~   58 (184)
                      |++|+.||||+|.|+...++.+...++|+.|+|+.|+++..-                        -..|..+.+|+.||
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld  371 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD  371 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence            445555555555555455555555555555555555555222                        22345566777777


Q ss_pred             ccCCCCCCCCCCc
Q 045886           59 LSYNNSSGKIPLG   71 (184)
Q Consensus        59 ls~N~l~g~~p~~   71 (184)
                      |++|.+++.+.+.
T Consensus       372 Lr~N~ls~~IEDa  384 (873)
T KOG4194|consen  372 LRSNELSWCIEDA  384 (873)
T ss_pred             CcCCeEEEEEecc
Confidence            7777777666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.38  E-value=6.7e-08  Score=82.61  Aligned_cols=91  Identities=30%  Similarity=0.328  Sum_probs=72.2

Q ss_pred             CcCCceeeeccCCCCCCCCcc---cCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCCCCCCCccccccCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPK---IGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFN   78 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~---~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~   78 (184)
                      +++|+.|||++|.+++.|-+.   |.+|++|+.|++.+|++. .+| .+|..+..|++|||.+|.+...-|....-..|.
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk  442 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELK  442 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccchhh
Confidence            578889999999998776543   778999999999999999 566 588899999999999998887666653333666


Q ss_pred             cccccCCcCCCCCCCC
Q 045886           79 ASVYAGNLELCGLPLA   94 (184)
Q Consensus        79 ~~~~~~N~~lc~~~~~   94 (184)
                      .+.+....++|+|.+.
T Consensus       443 ~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  443 ELVMNSSSFLCDCQLK  458 (873)
T ss_pred             hhhhcccceEEeccHH
Confidence            6777777889998654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=4.8e-07  Score=51.80  Aligned_cols=38  Identities=42%  Similarity=0.566  Sum_probs=33.2

Q ss_pred             CCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886           28 TSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus        28 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      ++|++|++++|+++ .+|..+.++++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            47999999999999 889889999999999999999873

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.30  E-value=6.4e-08  Score=86.10  Aligned_cols=86  Identities=33%  Similarity=0.429  Sum_probs=62.5

Q ss_pred             CCcCCceeeeccCCCCCCCCcc-cCCCCCCCEeeccCCcCCCCCccc----------------------ccCCCCCCeee
Q 045886            2 DLVGLIAVNLSRNNLTGPITPK-IGELTSLDFLDLSRNLFSGSIPSS----------------------LSQLSGLGVLD   58 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~P~~----------------------~~~l~~L~~l~   58 (184)
                      ++..|+.|+|++|++. .+|.. +.++..|+.|+||+|+|+ .+|+.                      +.+++.|+.+|
T Consensus       381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD  458 (1081)
T ss_pred             cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence            4567888888888887 66755 677888888888888877 66554                      45677888889


Q ss_pred             ccCCCCCCCC-CCccccccCCcccccCCcCCC
Q 045886           59 LSYNNSSGKI-PLGTQLQSFNASVYAGNLELC   89 (184)
Q Consensus        59 ls~N~l~g~~-p~~~~l~~l~~~~~~~N~~lc   89 (184)
                      ++.|+|+... |....-..|..+++.||+++-
T Consensus       459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             cccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            9999887543 332223678888999998643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.30  E-value=1.1e-07  Score=75.62  Aligned_cols=79  Identities=28%  Similarity=0.271  Sum_probs=62.7

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      +.|+.||||+|.++ .+..+..-+|.++.|++|+|.+. .+ .++..+++|+.||+|+|.++...-....+.++..+.++
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            46889999999999 88888888999999999999999 55 44889999999999999997655444444444444444


Q ss_pred             CC
Q 045886           84 GN   85 (184)
Q Consensus        84 ~N   85 (184)
                      +|
T Consensus       361 ~N  362 (490)
T KOG1259|consen  361 QN  362 (490)
T ss_pred             hh
Confidence            44

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.28  E-value=6.6e-08  Score=68.65  Aligned_cols=81  Identities=21%  Similarity=0.287  Sum_probs=65.5

Q ss_pred             cCCceeeeccCCCCCCCCcccCC-CCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGE-LTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~-l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      ..|+..+|++|.|. ..|+.|.. ++.++.|++++|.++ .+|..+..++.|+.+++++|.+...+.....+.++..++.
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            45677899999999 78877765 458999999999999 8999999999999999999999876655555666666655


Q ss_pred             cCCc
Q 045886           83 AGNL   86 (184)
Q Consensus        83 ~~N~   86 (184)
                      .+|.
T Consensus       131 ~~na  134 (177)
T KOG4579|consen  131 PENA  134 (177)
T ss_pred             CCCc
Confidence            5543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.27  E-value=3.8e-07  Score=67.76  Aligned_cols=82  Identities=30%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccC-CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIG-ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~   79 (184)
                      +...++.|+|++|.|+ .+. .++ .+.+|+.||+++|.++ .++ .+..++.|+.|++++|+++...+.. ..+..+..
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            4456889999999999 554 465 6889999999999999 664 5888999999999999998643322 24678888


Q ss_pred             ccccCCcC
Q 045886           80 SVYAGNLE   87 (184)
Q Consensus        80 ~~~~~N~~   87 (184)
                      +++.+|..
T Consensus        93 L~L~~N~I  100 (175)
T PF14580_consen   93 LYLSNNKI  100 (175)
T ss_dssp             EE-TTS--
T ss_pred             EECcCCcC
Confidence            88888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.15  E-value=2.3e-07  Score=82.64  Aligned_cols=88  Identities=26%  Similarity=0.253  Sum_probs=68.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcc-cccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~-~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~   80 (184)
                      .+..|+.|++.+|.++...-+-+.++.+|+.|+|++|+|. .+|+ .+.++..|+.|+||+|+|+........+..+..+
T Consensus       357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL  435 (1081)
T ss_pred             hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence            3567889999999999888788999999999999999999 7886 5778999999999999998543222444455555


Q ss_pred             cccCCcCCCC
Q 045886           81 VYAGNLELCG   90 (184)
Q Consensus        81 ~~~~N~~lc~   90 (184)
                      ...+|..+|-
T Consensus       436 ~ahsN~l~~f  445 (1081)
T KOG0618|consen  436 RAHSNQLLSF  445 (1081)
T ss_pred             hhcCCceeec
Confidence            5555555553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.10  E-value=1e-06  Score=76.35  Aligned_cols=84  Identities=35%  Similarity=0.389  Sum_probs=68.2

Q ss_pred             CCcCCceeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc--cccccCC
Q 045886            2 DLVGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG--TQLQSFN   78 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~--~~l~~l~   78 (184)
                      .|+.|+.+++..|++. .-+|+.+..|..|..||||+|+|+ +.|..+....++-.|+||+|++. .||..  ..+..+-
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLL  153 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHh
Confidence            5677888888888886 458888999999999999999999 89999999999999999999997 56654  3455555


Q ss_pred             cccccCCcC
Q 045886           79 ASVYAGNLE   87 (184)
Q Consensus        79 ~~~~~~N~~   87 (184)
                      .++++.|..
T Consensus       154 fLDLS~NrL  162 (1255)
T KOG0444|consen  154 FLDLSNNRL  162 (1255)
T ss_pred             hhccccchh
Confidence            666777653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.09  E-value=1.4e-07  Score=82.41  Aligned_cols=85  Identities=34%  Similarity=0.391  Sum_probs=56.0

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccc----------------------ccCCCCCCeeeccC
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS----------------------LSQLSGLGVLDLSY   61 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~----------------------~~~l~~L~~l~ls~   61 (184)
                      +.|+.|||++|+++ ... .+..++.|++|||+.|+|. .+|.-                      +.++.+|+.||+++
T Consensus       187 ~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  187 PALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence            45667777777776 333 5666777777777777776 55531                      44566777778888


Q ss_pred             CCCCCCCCC--ccccccCCcccccCCcCCCCC
Q 045886           62 NNSSGKIPL--GTQLQSFNASVYAGNLELCGL   91 (184)
Q Consensus        62 N~l~g~~p~--~~~l~~l~~~~~~~N~~lc~~   91 (184)
                      |-+++--.-  ...+..|..+.+.|||.-|.+
T Consensus       264 Nll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  264 NLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            777653221  134566777889999987753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.91  E-value=6.4e-06  Score=73.88  Aligned_cols=76  Identities=29%  Similarity=0.267  Sum_probs=45.1

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~   82 (184)
                      .+|+.|+|++|+|+ .+|..   .++|+.|++++|+|+ .+|...   .+|+.|++++|+++. +|.. ..+..+..+++
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCcccc-cChHHhhccCCCeEEC
Confidence            35667777777777 45543   245667777777776 455432   345666777777663 4432 44555666666


Q ss_pred             cCCcCC
Q 045886           83 AGNLEL   88 (184)
Q Consensus        83 ~~N~~l   88 (184)
                      .+|+..
T Consensus       453 s~N~Ls  458 (788)
T PRK15387        453 EGNPLS  458 (788)
T ss_pred             CCCCCC
Confidence            666643

>PLN03210 Resistant to P

Probab=97.91  E-value=3.2e-05  Score=72.79  Aligned_cols=82  Identities=28%  Similarity=0.318  Sum_probs=45.4

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +++|+.|+|+++..-+.+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|....+++|..+.+
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L  711 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL  711 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC
Confidence            45556666655443334543 55566666666666554446666666666666666666544444554434455555555


Q ss_pred             cCC
Q 045886           83 AGN   85 (184)
Q Consensus        83 ~~N   85 (184)
                      .+|
T Consensus       712 sgc  714 (1153)
T PLN03210        712 SGC  714 (1153)
T ss_pred             CCC
Confidence            544

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.83  E-value=2e-05  Score=70.84  Aligned_cols=58  Identities=29%  Similarity=0.303  Sum_probs=25.0

Q ss_pred             CceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC
Q 045886            6 LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI   68 (184)
Q Consensus         6 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~   68 (184)
                      |+.|++++|+|+ .+|...   ..|+.|++++|+|+ .+|..+..+++|+.+++++|+|++.+
T Consensus       404 L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        404 LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             CCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence            444444444444 233321   23344444444444 44444444444444444444444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.75  E-value=5e-06  Score=68.33  Aligned_cols=84  Identities=23%  Similarity=0.174  Sum_probs=61.6

Q ss_pred             CceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeecc-CCCCCCCCCCc-cccccCCccccc
Q 045886            6 LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS-YNNSSGKIPLG-TQLQSFNASVYA   83 (184)
Q Consensus         6 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls-~N~l~g~~p~~-~~l~~l~~~~~~   83 (184)
                      -..++|..|+|+-..|..|+.+++|+.||||+|.|+-.-|.+|..+.+|..|-+- +|+++...-.. ..+.++..+.  
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl--  146 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL--  146 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh--
Confidence            4679999999994444569999999999999999998889999999988777554 58887443322 3444444433  


Q ss_pred             CCcCCCCC
Q 045886           84 GNLELCGL   91 (184)
Q Consensus        84 ~N~~lc~~   91 (184)
                      -|++.|.|
T Consensus       147 lNan~i~C  154 (498)
T KOG4237|consen  147 LNANHINC  154 (498)
T ss_pred             cChhhhcc
Confidence            45555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.74  E-value=1.7e-05  Score=71.19  Aligned_cols=58  Identities=28%  Similarity=0.452  Sum_probs=36.1

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK   67 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~   67 (184)
                      ++|+.|++++|.++ .+|..+.  ++|+.|++++|+|+ .+|..+.  ++|+.|++++|+|+..
T Consensus       325 ~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        325 PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL  382 (754)
T ss_pred             ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC
Confidence            35666777777776 4565443  46777777777766 5665442  4666666666666643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.71  E-value=6.8e-05  Score=67.41  Aligned_cols=13  Identities=46%  Similarity=0.391  Sum_probs=5.8

Q ss_pred             CCCeeeccCCCCC
Q 045886           53 GLGVLDLSYNNSS   65 (184)
Q Consensus        53 ~L~~l~ls~N~l~   65 (184)
                      +|+.|++++|+++
T Consensus       263 ~L~~L~Ls~N~L~  275 (754)
T PRK15370        263 ALQSLDLFHNKIS  275 (754)
T ss_pred             CCCEEECcCCccC
Confidence            3444444444444

>PLN03210 Resistant to P

Probab=97.69  E-value=0.00011  Score=69.25  Aligned_cols=84  Identities=23%  Similarity=0.232  Sum_probs=57.6

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +.+|+.|+|++|++. .+|..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|.. ..+.+|..++
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            356777777777777 6777777777888888877654446664 667778888888776655556654 4566666677


Q ss_pred             ccCCcCC
Q 045886           82 YAGNLEL   88 (184)
Q Consensus        82 ~~~N~~l   88 (184)
                      +.++..+
T Consensus       688 L~~c~~L  694 (1153)
T PLN03210        688 MSRCENL  694 (1153)
T ss_pred             CCCCCCc
Confidence            7665443

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.68  E-value=1.7e-05  Score=72.32  Aligned_cols=80  Identities=34%  Similarity=0.381  Sum_probs=65.0

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .++.|.+|||++|.=-+.+|.+++.|.+|++|++++..++ .+|..+.++..|.+||+..+.-...+|.. ..+.+|+.+
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            4778999999998766699999999999999999999999 89999999999999999987765555544 235566555


Q ss_pred             cc
Q 045886           81 VY   82 (184)
Q Consensus        81 ~~   82 (184)
                      .+
T Consensus       648 ~l  649 (889)
T KOG4658|consen  648 RL  649 (889)
T ss_pred             Ee
Confidence            43

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.68  E-value=1.3e-05  Score=66.68  Aligned_cols=79  Identities=34%  Similarity=0.383  Sum_probs=50.1

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccccC
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAG   84 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~~   84 (184)
                      +|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.+++++|+++...+.......+..+.+.+
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence            5677777777777 66666677777777777777777 666655566777777777777764443322223344444444


Q ss_pred             C
Q 045886           85 N   85 (184)
Q Consensus        85 N   85 (184)
                      |
T Consensus       219 N  219 (394)
T COG4886         219 N  219 (394)
T ss_pred             C
Confidence            4

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.66  E-value=4e-06  Score=71.70  Aligned_cols=75  Identities=28%  Similarity=0.345  Sum_probs=51.3

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~   79 (184)
                      ++..|++|||+.|+++ .+|..+..|+ |+.|-+++|+++ .+|+.++.++.|..||.+.|++...++....+.++..
T Consensus       119 ~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~  193 (722)
T KOG0532|consen  119 NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence            4566777777777777 7777766666 777777777777 6777777777777777777777655554444444333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.65  E-value=2.6e-05  Score=64.79  Aligned_cols=83  Identities=41%  Similarity=0.525  Sum_probs=69.9

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCC-CCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELT-SLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      ++.++.|++.+|.++ .+|+....+. +|+.|++++|++. .+|..+..++.|+.|++++|+++...+.......+..+.
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            356889999999999 8998888885 9999999999999 888889999999999999999996665443666677777


Q ss_pred             ccCCcC
Q 045886           82 YAGNLE   87 (184)
Q Consensus        82 ~~~N~~   87 (184)
                      +++|..
T Consensus       193 ls~N~i  198 (394)
T COG4886         193 LSGNKI  198 (394)
T ss_pred             ccCCcc
Confidence            777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.64  E-value=3.7e-06  Score=59.87  Aligned_cols=66  Identities=21%  Similarity=0.359  Sum_probs=58.5

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG   71 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~   71 (184)
                      ++.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|..+..+.+|-+||..+|.+. ++|..
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            346788999999999 99999999999999999999999 88999999999999999999886 44443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.62  E-value=4.4e-06  Score=71.44  Aligned_cols=60  Identities=32%  Similarity=0.416  Sum_probs=32.7

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +.+|+.|++..|++. .+|+++..|+ |..||+|+|+++ .+|..|..|..|++|-|.+|.|+
T Consensus       188 l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  188 LTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            344445555555555 4555544333 555566666655 55555566666666666666555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.55  E-value=1.9e-05  Score=63.16  Aligned_cols=58  Identities=29%  Similarity=0.383  Sum_probs=38.5

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN   63 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~   63 (184)
                      ++.++.|++|+|.+. .+.. +..|++|++||||+|.++ .+-..=..+.+.+.|.++.|.
T Consensus       306 ~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             ccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence            356788999999988 5543 778899999999999887 443332333344444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.54  E-value=0.00011  Score=55.45  Aligned_cols=82  Identities=21%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC--CCCccccccCCccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK--IPLGTQLQSFNASV   81 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~--~p~~~~l~~l~~~~   81 (184)
                      .....+||++|.+. .++ .|..++.|.+|.+++|+++..-|.--.-+++|+.|.+.+|.+...  +.....+..|..+.
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45668999999987 443 477899999999999999954444333457899999999998743  22334566777788


Q ss_pred             ccCCcC
Q 045886           82 YAGNLE   87 (184)
Q Consensus        82 ~~~N~~   87 (184)
                      +.|||-
T Consensus       120 ll~Npv  125 (233)
T KOG1644|consen  120 LLGNPV  125 (233)
T ss_pred             ecCCch
Confidence            888873

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.51  E-value=5.8e-05  Score=63.46  Aligned_cols=60  Identities=37%  Similarity=0.388  Sum_probs=36.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +++|..|++.+|++. .+...+..+++|++|++++|.++ .+. .+..++.|+.|++++|.++
T Consensus        94 ~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             ccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch
Confidence            456666777777766 44333556666777777777666 332 2455555666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.48  E-value=2.1e-05  Score=63.07  Aligned_cols=62  Identities=27%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCC---CCEeeccCCcCCC----CCcccccCC-CCCCeeeccCCCCC
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTS---LDFLDLSRNLFSG----SIPSSLSQL-SGLGVLDLSYNNSS   65 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~---L~~L~ls~N~l~g----~~P~~~~~l-~~L~~l~ls~N~l~   65 (184)
                      ..|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.+++++|.++
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            34555555555554433333333333   5555555555442    111223333 44555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.46  E-value=2.7e-05  Score=62.38  Aligned_cols=62  Identities=26%  Similarity=0.379  Sum_probs=34.6

Q ss_pred             CCceeeeccCCCCC----CCCcccCCC-CCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCC
Q 045886            5 GLIAVNLSRNNLTG----PITPKIGEL-TSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g----~~p~~~~~l-~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      .|++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++..+..+..|+.|++++|.+++
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            36666776666652    222234444 5666666666666632    22234445566666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.03  E-value=0.0002  Score=34.49  Aligned_cols=19  Identities=42%  Similarity=0.506  Sum_probs=10.5

Q ss_pred             CceeeeccCCCCCCCCcccC
Q 045886            6 LIAVNLSRNNLTGPITPKIG   25 (184)
Q Consensus         6 L~~L~Ls~N~l~g~~p~~~~   25 (184)
                      |++|||++|+|+ .+|++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455566666555 5555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.88  E-value=6.8e-05  Score=66.15  Aligned_cols=59  Identities=34%  Similarity=0.448  Sum_probs=51.2

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      .|...+.++|.+. ....++.-++.|++|||++|+++ ..- .+..++.|++||+++|.|.-
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~  223 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRH  223 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhcc
Confidence            3566788999998 78888888999999999999999 553 78899999999999999973

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.78  E-value=0.00046  Score=58.05  Aligned_cols=82  Identities=35%  Similarity=0.431  Sum_probs=63.6

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +..++.+++..|.+. .+-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|+++...+- ..+..+..+.+
T Consensus        71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l-~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGL-STLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccch-hhccchhhhee
Confidence            456777888889888 44455788999999999999999 5555478899999999999999865543 34444667777


Q ss_pred             cCCcC
Q 045886           83 AGNLE   87 (184)
Q Consensus        83 ~~N~~   87 (184)
                      .+|+.
T Consensus       148 ~~N~i  152 (414)
T KOG0531|consen  148 SGNLI  152 (414)
T ss_pred             ccCcc
Confidence            77764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.73  E-value=0.0004  Score=33.40  Aligned_cols=21  Identities=57%  Similarity=0.857  Sum_probs=15.6

Q ss_pred             CCCEeeccCCcCCCCCcccccC
Q 045886           29 SLDFLDLSRNLFSGSIPSSLSQ   50 (184)
Q Consensus        29 ~L~~L~ls~N~l~g~~P~~~~~   50 (184)
                      +|++||+++|+++ .+|++|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4678888888888 77776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.66  E-value=0.00099  Score=61.06  Aligned_cols=86  Identities=29%  Similarity=0.186  Sum_probs=68.7

Q ss_pred             CcCCceeeeccCC--CCCCCCcc-cCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCc
Q 045886            3 LVGLIAVNLSRNN--LTGPITPK-IGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNA   79 (184)
Q Consensus         3 l~~L~~L~Ls~N~--l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~   79 (184)
                      .+.|+.|-+.+|.  +. .++.. |..|+.|..|||++|.=-+.+|..++++-+|++||++...++..++....++.|..
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            3467888888886  55 55544 77899999999999887779999999999999999999999966655577777777


Q ss_pred             ccccCCcCCC
Q 045886           80 SVYAGNLELC   89 (184)
Q Consensus        80 ~~~~~N~~lc   89 (184)
                      +++..+..+.
T Consensus       623 Lnl~~~~~l~  632 (889)
T KOG4658|consen  623 LNLEVTGRLE  632 (889)
T ss_pred             eccccccccc
Confidence            7766554444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.47  E-value=0.0022  Score=50.13  Aligned_cols=42  Identities=33%  Similarity=0.370  Sum_probs=22.6

Q ss_pred             cCCCCCCCEeeccCC--cCCCCCcccccCCCCCCeeeccCCCCC
Q 045886           24 IGELTSLDFLDLSRN--LFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus        24 ~~~l~~L~~L~ls~N--~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +..|++|+.|++|.|  +..+.++.....+++|++++++.|++.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            444555555666666  444444444444455666666665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.25  E-value=0.0031  Score=49.34  Aligned_cols=63  Identities=29%  Similarity=0.339  Sum_probs=50.4

Q ss_pred             CCcCCceeeeccC--CCCCCCCcccCCCCCCCEeeccCCcCCCCCccc---ccCCCCCCeeeccCCCCCC
Q 045886            2 DLVGLIAVNLSRN--NLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS---LSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         2 ~l~~L~~L~Ls~N--~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~---~~~l~~L~~l~ls~N~l~g   66 (184)
                      .|++|+.|.+|.|  ++++.++...-.+++|+++++++|++. . +++   +..+.+|..||+.++.-..
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCccc
Confidence            3678999999999  777777777777899999999999998 2 333   4556788899999887665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.0032  Score=52.74  Aligned_cols=62  Identities=32%  Similarity=0.391  Sum_probs=40.1

Q ss_pred             CcCCceeeeccCCCCCCCC--cccCCCCCCCEeeccCCcCCCC-Cccc-----ccCCCCCCeeeccCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPIT--PKIGELTSLDFLDLSRNLFSGS-IPSS-----LSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~ls~N~l~g~-~P~~-----~~~l~~L~~l~ls~N~l~   65 (184)
                      ++.|+.|||++|++- ..+  ...+.++.|+.|+++.+.+... +|+.     ...+++|++|+++.|++.
T Consensus       245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            355777777777766 444  3356677777777777776521 3333     345677888888888774

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.0017  Score=54.29  Aligned_cols=87  Identities=26%  Similarity=0.118  Sum_probs=37.3

Q ss_pred             CcCCceeeeccCCCCCCCCcc-cCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCC-CCCCCccccccCCc
Q 045886            3 LVGLIAVNLSRNNLTGPITPK-IGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSS-GKIPLGTQLQSFNA   79 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~-g~~p~~~~l~~l~~   79 (184)
                      |++|+.|+||.|.+.-..... -..+++|+.|.++.+.|+..-- .-...+|+|+.|+++.|... -..-....++.+..
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            444555555555444111111 1123344444444444432110 11233566666666666321 11112234555666


Q ss_pred             ccccCCcCCC
Q 045886           80 SVYAGNLELC   89 (184)
Q Consensus        80 ~~~~~N~~lc   89 (184)
                      +++++|+.+-
T Consensus       251 LdLs~N~li~  260 (505)
T KOG3207|consen  251 LDLSNNNLID  260 (505)
T ss_pred             ccccCCcccc
Confidence            6666666544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.55  E-value=0.0078  Score=26.94  Aligned_cols=13  Identities=46%  Similarity=0.608  Sum_probs=5.0

Q ss_pred             CCceeeeccCCCC
Q 045886            5 GLIAVNLSRNNLT   17 (184)
Q Consensus         5 ~L~~L~Ls~N~l~   17 (184)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555544

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.49  E-value=0.0074  Score=27.01  Aligned_cols=13  Identities=46%  Similarity=0.582  Sum_probs=6.3

Q ss_pred             CCCEeeccCCcCC
Q 045886           29 SLDFLDLSRNLFS   41 (184)
Q Consensus        29 ~L~~L~ls~N~l~   41 (184)
                      +|+.|++++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666665

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.33  E-value=0.021  Score=43.47  Aligned_cols=75  Identities=23%  Similarity=0.293  Sum_probs=54.1

Q ss_pred             eeeeccCCCCCCCCcccC-CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCcc-ccccCCcccccCC
Q 045886            8 AVNLSRNNLTGPITPKIG-ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGT-QLQSFNASVYAGN   85 (184)
Q Consensus         8 ~L~Ls~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~-~l~~l~~~~~~~N   85 (184)
                      .++|.+.++. .+-. ++ .+.+...+||++|++. .+ +.|..++.|..|.+.+|+++..-|... .+..+..+.+.+|
T Consensus        23 e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   23 ELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            4666666654 2221 22 3457889999999998 55 347889999999999999998877763 4455777777776


Q ss_pred             c
Q 045886           86 L   86 (184)
Q Consensus        86 ~   86 (184)
                      .
T Consensus        99 s   99 (233)
T KOG1644|consen   99 S   99 (233)
T ss_pred             c
Confidence            4

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.76  E-value=0.023  Score=28.14  Aligned_cols=14  Identities=36%  Similarity=0.494  Sum_probs=6.7

Q ss_pred             cCCceeeeccCCCC
Q 045886            4 VGLIAVNLSRNNLT   17 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~   17 (184)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.76  E-value=0.023  Score=28.14  Aligned_cols=14  Identities=36%  Similarity=0.494  Sum_probs=6.7

Q ss_pred             cCCceeeeccCCCC
Q 045886            4 VGLIAVNLSRNNLT   17 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~   17 (184)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.60  E-value=0.031  Score=27.63  Aligned_cols=20  Identities=50%  Similarity=0.664  Sum_probs=14.1

Q ss_pred             CCCCCEeeccCCcCCCCCccc
Q 045886           27 LTSLDFLDLSRNLFSGSIPSS   47 (184)
Q Consensus        27 l~~L~~L~ls~N~l~g~~P~~   47 (184)
                      |++|++|+|++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456778888888887 66653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.60  E-value=0.031  Score=27.63  Aligned_cols=20  Identities=50%  Similarity=0.664  Sum_probs=14.1

Q ss_pred             CCCCCEeeccCCcCCCCCccc
Q 045886           27 LTSLDFLDLSRNLFSGSIPSS   47 (184)
Q Consensus        27 l~~L~~L~ls~N~l~g~~P~~   47 (184)
                      |++|++|+|++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456778888888887 66653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.58  E-value=0.0013  Score=51.07  Aligned_cols=60  Identities=13%  Similarity=0.051  Sum_probs=46.2

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +.|..||++.|++. .+|.+++++..+.++++-+|.++ ..|-++...+.++++++..|.|.
T Consensus        65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            34566777777777 77888888888888888888888 77888888888888888777664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.43  E-value=0.001  Score=51.67  Aligned_cols=82  Identities=21%  Similarity=0.125  Sum_probs=64.4

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      ....+.||++.|++. .+...|+-++.|..||++.|++. .+|..+.++..+..+++-+|+++..+-+..+...+.....
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            345678999999998 77778888999999999999999 8999999999999999999988855544455555544444


Q ss_pred             cCCc
Q 045886           83 AGNL   86 (184)
Q Consensus        83 ~~N~   86 (184)
                      -+|+
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            4444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.19  E-value=0.011  Score=47.69  Aligned_cols=61  Identities=28%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             cCCceeeeccCCCCC--CCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCC
Q 045886            4 VGLIAVNLSRNNLTG--PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNS   64 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l   64 (184)
                      +.++.|||.+|.++.  .+-..+.+||.|+.|++++|.|...|-..-..+.+|+.+-+.+-.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            445667777777762  1222345677777777777777633321112334555555544433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.0058  Score=48.70  Aligned_cols=66  Identities=26%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCc--ccccCCCCCCeeeccCCCCCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIP--SSLSQLSGLGVLDLSYNNSSGKIPL   70 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P--~~~~~l~~L~~l~ls~N~l~g~~p~   70 (184)
                      .|+.|++|.||-|.++ .+- .+..++.|+.|+|..|.|. .+-  ..+.++++|+.|.+..|...|.-+.
T Consensus        39 kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             hcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccch
Confidence            4778999999999998 442 2678889999999999998 443  3467899999999999999886543

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.32  E-value=0.15  Score=43.03  Aligned_cols=53  Identities=13%  Similarity=0.236  Sum_probs=32.5

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccC-CcCCCCCcccccCCCCCCeeeccCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSR-NLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      +..++.|++++|.++ .+|. +  ..+|+.|.+++ +.++ .+|..+.  ++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence            467788888888888 6662 1  23577777765 4444 5554332  35566666555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.76  E-value=0.084  Score=42.67  Aligned_cols=64  Identities=31%  Similarity=0.278  Sum_probs=48.0

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +|+.|+.|+|+.|++...|...-..+.+|+.|-|.+..|...-- ..+..+|.++.+.+|.|.+.
T Consensus        95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen   95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            57899999999999985544332456789999999988875433 34566788889999988553

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.98  E-value=0.15  Score=25.40  Aligned_cols=17  Identities=41%  Similarity=0.624  Sum_probs=10.4

Q ss_pred             CCCEeeccCCcCCCCCcc
Q 045886           29 SLDFLDLSRNLFSGSIPS   46 (184)
Q Consensus        29 ~L~~L~ls~N~l~g~~P~   46 (184)
                      +|+.|++++|+|+ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4566666666666 5554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.55  E-value=0.14  Score=46.18  Aligned_cols=58  Identities=24%  Similarity=0.318  Sum_probs=28.5

Q ss_pred             CcCCceeeeccCCCCC-CCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886            3 LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      |++|+.|.+++=.+.. ..-....++++|..||+|+.+++ .+ ..++.+++|+.|-+.+=
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnL  205 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNL  205 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCC
Confidence            4556666665544431 11222345566666666666555 33 34445555555544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=89.85  E-value=0.13  Score=46.29  Aligned_cols=39  Identities=31%  Similarity=0.325  Sum_probs=17.5

Q ss_pred             CCCCCEeeccCCcCCCC-CcccccCCCCCCeeeccCCCCC
Q 045886           27 LTSLDFLDLSRNLFSGS-IPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus        27 l~~L~~L~ls~N~l~g~-~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      ||+|++|.+++=.+... .-.-..++++|..||+|+-+++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence            45555555555444311 1122334555555555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=89.75  E-value=0.53  Score=39.83  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=15.6

Q ss_pred             CCceeeecc-CCCCCCCCcccCCCCCCCEeeccCC
Q 045886            5 GLIAVNLSR-NNLTGPITPKIGELTSLDFLDLSRN   38 (184)
Q Consensus         5 ~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~ls~N   38 (184)
                      +|+.|++++ ++++ .+|..+.  ++|+.|++++|
T Consensus        73 sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence            466666655 3343 4454332  34555555555

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=88.06  E-value=0.44  Score=26.36  Aligned_cols=25  Identities=12%  Similarity=0.038  Sum_probs=12.7

Q ss_pred             ceeehhhHHHHHHHHHHHHHHHhhc
Q 045886          126 GFYVSSILGFFVGFWGVCGYLMLNR  150 (184)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~  150 (184)
                      .+..++++.+.++++++++++++.+
T Consensus        12 aIa~~VvVPV~vI~~vl~~~l~~~~   36 (40)
T PF08693_consen   12 AIAVGVVVPVGVIIIVLGAFLFFWY   36 (40)
T ss_pred             EEEEEEEechHHHHHHHHHHhheEE
Confidence            3455666666555544444444333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=87.75  E-value=0.36  Score=33.70  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=10.6

Q ss_pred             ceeehhhHHHHHHHHHHHHH
Q 045886          126 GFYVSSILGFFVGFWGVCGY  145 (184)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~  145 (184)
                      +.++++++|++++++.++++
T Consensus        64 ~~i~~Ii~gv~aGvIg~Ill   83 (122)
T PF01102_consen   64 PAIIGIIFGVMAGVIGIILL   83 (122)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH
T ss_pred             cceeehhHHHHHHHHHHHHH
Confidence            34556666666655444443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.96  E-value=0.052  Score=26.26  Aligned_cols=11  Identities=55%  Similarity=0.694  Sum_probs=3.6

Q ss_pred             CCEeeccCCcC
Q 045886           30 LDFLDLSRNLF   40 (184)
Q Consensus        30 L~~L~ls~N~l   40 (184)
                      |++|++++|.+
T Consensus         4 L~~L~l~~n~i   14 (24)
T PF13516_consen    4 LETLDLSNNQI   14 (24)
T ss_dssp             -SEEE-TSSBE
T ss_pred             CCEEEccCCcC
Confidence            33444444433

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.37  E-value=0.57  Score=23.34  Aligned_cols=14  Identities=29%  Similarity=0.498  Sum_probs=6.6

Q ss_pred             cCCceeeeccCCCC
Q 045886            4 VGLIAVNLSRNNLT   17 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~   17 (184)
                      ++|+.|+|+.|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34444555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.01  E-value=0.52  Score=37.83  Aligned_cols=38  Identities=34%  Similarity=0.411  Sum_probs=17.3

Q ss_pred             CCCCCEeeccCCcCCCCCcccc----cCCCCCCeeeccCCCC
Q 045886           27 LTSLDFLDLSRNLFSGSIPSSL----SQLSGLGVLDLSYNNS   64 (184)
Q Consensus        27 l~~L~~L~ls~N~l~g~~P~~~----~~l~~L~~l~ls~N~l   64 (184)
                      +|.|+..+||.|-+....|+.+    +.-+.|.+|.+++|.+
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            3445555555555544444322    2334455555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=85.71  E-value=0.23  Score=40.73  Aligned_cols=62  Identities=27%  Similarity=0.333  Sum_probs=33.1

Q ss_pred             cCCceeeeccCCCC--CC--CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCC
Q 045886            4 VGLIAVNLSRNNLT--GP--ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~--g~--~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +.|+.+.++.|.+.  |.  +-..+..+++|+.|||..|-|+-.    +-..+..+++|+.++++++.+.
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            45566666666654  11  112244566666666666666522    1223445556666666666554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.22  E-value=0.66  Score=23.33  Aligned_cols=13  Identities=38%  Similarity=0.514  Sum_probs=7.1

Q ss_pred             CCceeeeccCCCC
Q 045886            5 GLIAVNLSRNNLT   17 (184)
Q Consensus         5 ~L~~L~Ls~N~l~   17 (184)
                      +|++|||++|.|.
T Consensus         3 ~L~~LdL~~N~i~   15 (28)
T smart00368        3 SLRELDLSNNKLG   15 (28)
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555553

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=85.20  E-value=1  Score=32.54  Aligned_cols=11  Identities=18%  Similarity=0.030  Sum_probs=4.5

Q ss_pred             ceeehhhHHHH
Q 045886          126 GFYVSSILGFF  136 (184)
Q Consensus       126 ~~~~~~~~~~~  136 (184)
                      ++++++.++++
T Consensus        53 GvVVGVGg~il   63 (154)
T PF04478_consen   53 GVVVGVGGPIL   63 (154)
T ss_pred             EEEecccHHHH
Confidence            44444444333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>TIGR00864 PCC polycystin cation channel protein

Probab=83.73  E-value=0.63  Score=47.44  Aligned_cols=32  Identities=31%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             eccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886           34 DLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus        34 ~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      ||++|+|+-.-+..|..+++|+.|+|++|.+.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~   32 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE   32 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence            67888888333356777888888888777664

Note: this model has been restricted to the amino half because for technical reasons.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=83.32  E-value=0.86  Score=32.94  Aligned_cols=22  Identities=9%  Similarity=-0.052  Sum_probs=15.5

Q ss_pred             eeehhhHHHHHHHHHHHHHHHh
Q 045886          127 FYVSSILGFFVGFWGVCGYLML  148 (184)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~  148 (184)
                      +++++++|+-+.+++++++++|
T Consensus        50 IVIGvVVGVGg~ill~il~lvf   71 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLGILALVF   71 (154)
T ss_pred             EEEEEEecccHHHHHHHHHhhe
Confidence            7899999977766655554443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.98  E-value=0.066  Score=42.86  Aligned_cols=79  Identities=24%  Similarity=0.165  Sum_probs=56.6

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc---cccccCCc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG---TQLQSFNA   79 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~---~~l~~l~~   79 (184)
                      +.+.+.||.-++.|. .|. ....|+.|+.|.||-|.++ .+ ..+..++.|+.|.|..|.+... ...   ..+.+|+.
T Consensus        18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhh
Confidence            445567888887776 332 2457999999999999999 55 3478889999999999987632 111   34455566


Q ss_pred             ccccCCc
Q 045886           80 SVYAGNL   86 (184)
Q Consensus        80 ~~~~~N~   86 (184)
                      +=+..||
T Consensus        93 LWL~ENP   99 (388)
T KOG2123|consen   93 LWLDENP   99 (388)
T ss_pred             HhhccCC
Confidence            6678887

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=80.37  E-value=1.8  Score=23.59  Aligned_cols=13  Identities=15%  Similarity=0.365  Sum_probs=6.0

Q ss_pred             eeehhhHHHHHHH
Q 045886          127 FYVSSILGFFVGF  139 (184)
Q Consensus       127 ~~~~~~~~~~~~~  139 (184)
                      +++++++|+++.+
T Consensus         8 IIv~V~vg~~iii   20 (38)
T PF02439_consen    8 IIVAVVVGMAIII   20 (38)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444555544433

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-05

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 41/93 (44%)
Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYNNSS 65
           L  +NL  N+++G I  ++G+L  L+ LDLS N                       NN S
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Query: 66  GKIPLGTQLQSFNASVYAGNLELCGLPLANMCP 98
           G IP   Q ++F  + +  N  LCG PL    P
Sbjct: 715 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 41/93 (44%)
Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNXXXXXXXXXXXXXXXXXXXXXXYNNSS 65
           L  +NL  N+++G I  ++G+L  L+ LDLS N                       NN S
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Query: 66  GKIPLGTQLQSFNASVYAGNLELCGLPLANMCP 98
           G IP   Q ++F  + +  N  LCG PL    P
Sbjct: 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (330), Expect = 1e-35
 Identities = 38/107 (35%), Positives = 56/107 (52%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            +  L  +NL  N+++G I  ++G+L  L+ LDLS N   G IP ++S L+ L  +DLS 
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGT 108
           NN SG IP   Q ++F  + +  N  LCG PL    P      +   
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.3 bits (199), Expect = 3e-18
 Identities = 32/78 (41%), Positives = 40/78 (51%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  ++LS N LTG I   IG L +L  L LS N FSG+IP+ L     L  LDL+ N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 63  NSSGKIPLGTQLQSFNAS 80
             +G IP     QS   +
Sbjct: 549 LFNGTIPAAMFKQSGKIA 566

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 9e-18
 Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  + L  N  TG I P +   + L  L LS N  SG+IPSSL  LS L  L L  N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

Query: 63  NSSGKIPL----GTQLQSFNAS 80
              G+IP        L++    
Sbjct: 453 MLEGEIPQELMYVKTLETLILD 474

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L++++LS N L+G I   +G L+ L  L L  N+  G IP  L  +  L  L L +N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 63  NSSGKIPLG----TQLQSFNAS 80
           + +G+IP G    T L   + S
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLS 498

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
           L  + L  N L G I  ++  + +L+ L L  N  +G IPS LS  + L  + LS N  +
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 66  GKIP 69
           G+IP
Sbjct: 504 GEIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 4e-17
 Identities = 26/69 (37%), Positives = 39/69 (56%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           M +  L  + L  N+LTG I   +   T+L+++ LS N  +G IP  + +L  L +L LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 61  YNNSSGKIP 69
            N+ SG IP
Sbjct: 523 NNSFSGNIP 531

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 6e-17
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
            V L  +++S NN +  I P +G+ ++L  LD+S N  SG    ++S  + L +L++S N
Sbjct: 199 CVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 63  NSSGKIPLG--TQLQSFNAS 80
              G IP      LQ  + +
Sbjct: 258 QFVGPIPPLPLKSLQYLSLA 277

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  ++L+ N  TG I   + G   +L  LDLS N F G++P      S L  L LS 
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 62  NNSSGKIPLG-----TQLQSFNAS 80
           NN SG++P+        L+  + S
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLS 351

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  +++S N L+G  +  I   T L  L++S N F G IP     L  L  L L+ N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279

Query: 63  NSSGKIP 69
             +G+IP
Sbjct: 280 KFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 3   LVGLIAVNLSRNNLTGPITPK-IGELTSLDFLDLSRNLFSGSIPSSLSQLSG-LGVLDLS 60
              L ++ LS NN +G +    + ++  L  LDLS N FSG +P SL+ LS  L  LDLS
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 61  YNNSSGKIP 69
            NN SG I 
Sbjct: 377 SNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  + +S N ++G +   +    +L+FLD+S N FS  IP  L   S L  LD+S N
Sbjct: 177 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 233

Query: 63  NSSGKIP--LG--TQLQSFNAS 80
             SG     +   T+L+  N S
Sbjct: 234 KLSGDFSRAISTCTELKLLNIS 255

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS--SLSQLSGLGVLDLS 60
           L GL ++ LS +++ G +        SL  LDLSRN  SG + +  SL   SGL  L++S
Sbjct: 76  LTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 61  YNNSSGKIPL 70
            N       +
Sbjct: 135 SNTLDFPGKV 144

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 6e-14
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  + LS N+ +G I  ++G+  SL +LDL+ NLF+G+IP+++ + S      ++ N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAAN 568

Query: 63  NSSGKIP 69
             +GK  
Sbjct: 569 FIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 8e-14
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 3   LVGLIAVNLSRNNLTGPI-TPKIGELTSLDFLDLSRNLFSGSIPSSL---SQLSGLGVLD 58
             GL  +N+S N L  P       +L SL+ LDLS N  SG+             L  L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 59  LSYNNSSGKIPLG--TQLQSFNAS 80
           +S N  SG + +     L+  + S
Sbjct: 185 ISGNKISGDVDVSRCVNLEFLDVS 208

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELT-SLDFLDLSRNLFSGSIPSSL--SQLSGLGVLDL 59
           + GL  ++LS N  +G +   +  L+ SL  LDLS N FSG I  +L  +  + L  L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 60  SYNNSSGKIP 69
             N  +GKIP
Sbjct: 402 QNNGFTGKIP 411

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 5e-13
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKI---GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVL 57
           + L  L  ++LS N+++G              L  L +S N  SG +   +S+   L  L
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFL 205

Query: 58  DLSYNNSSGKIP-LG--TQLQSFNAS 80
           D+S NN S  IP LG  + LQ  + S
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDIS 231

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPK--IGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDL 59
              L +++LSRN+L+GP+T    +G  + L FL++S N        S   +L+ L VLDL
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 60  SYNNSSGKIP 69
           S N+ SG   
Sbjct: 159 SANSISGANV 168

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 7e-13
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 6   LIAVNLSRNNLT---GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           + +++LS   L      ++  +  LT L+ L LS +  +GS+       + L  LDLS N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 63  NSSGKIPLGTQL 74
           + SG +   T L
Sbjct: 111 SLSGPVTTLTSL 122

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
                 +     G  + ++  L++ +  +++  ++ G    +      +  LD+SYN  S
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

Query: 66  GKIP 69
           G IP
Sbjct: 646 GYIP 649

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           D   LI ++L+ N   G I   + + +      ++ N  +G     +           + 
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 62  N--NSSGKIP 69
           N     G   
Sbjct: 592 NLLEFQGIRS 601

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 25 GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
           ++TS+D      N+   ++ SSL  L+GL  L LS ++ +G + 
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 94

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (273), Expect = 3e-29
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
                 ++L++N+L   +  K+G   +L+ LDL  N   G++P  L+QL  L  L++S+N
Sbjct: 220 DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 63  NSSGKIPLGTQLQSFNASVYAGNLELCGLPL 93
           N  G+IP G  LQ F+ S YA N  LCG PL
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.0 bits (206), Expect = 1e-19
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  + ++  N++G I   + ++ +L  LD S N  SG++P S+S L  L  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 63  NSSGKIP 69
             SG IP
Sbjct: 160 RISGAIP 166

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 2   DLVGLIAVNLS-RNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +L  L  + +   NNL GPI P I +LT L +L ++    SG+IP  LSQ+  L  LD S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 61  YNNSSGKIP 69
           YN  SG +P
Sbjct: 134 YNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.3 bits (194), Expect = 6e-18
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLG-VLDLSY 61
           +  L+ ++ S N L+G + P I  L +L  +    N  SG+IP S    S L   + +S 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 62  NNSSGKIP 69
           N  +GKIP
Sbjct: 184 NRLTGKIP 191

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLD-FLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L+ +    N ++G I    G  + L   + +SRN  +G IP + + L+ L  +DLS 
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206

Query: 62  NNSSGKIP 69
           N   G   
Sbjct: 207 NMLEGDAS 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.7 bits (182), Expect = 3e-16
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
            +SRN LTG I P    L +L F+DLSRN+  G              + L+ N+ +  + 
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 70  -LG--TQLQSFNAS 80
            +G    L   +  
Sbjct: 239 KVGLSKNLNGLDLR 252

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 6   LIAVNLSRNNLTG--PITPKIGELTSLDFLDLS-RNLFSGSIPSSLSQLSGLGVLDLSYN 62
           +  ++LS  NL    PI   +  L  L+FL +   N   G IP ++++L+ L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 63  NSSGKIP--LG--TQLQSFNAS 80
           N SG IP  L     L + + S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFS 133

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGS--IPSSLSQLSGLGVLDLSYNNS-SG 66
          +       G +     +   ++ LDLS         IPSSL+ L  L  L +   N+  G
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 67 KIP 69
           IP
Sbjct: 92 PIP 94

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
           +LS+  L          L+SL  L++S N F          L+ L VLD S N+      
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 70  -----LGTQLQSFNAS 80
                  + L   N +
Sbjct: 536 QELQHFPSSLAFLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLF-SGSIPSSLSQLSGLGVLDLSY 61
           L  L  +     NL       IG L +L  L+++ NL  S  +P   S L+ L  LDLS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 62  NNSSGKIP 69
           N       
Sbjct: 159 NKIQSIYC 166

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN-SSGKI 68
            L+ N +          L+SL  L       +      +  L  L  L++++N   S K+
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 69  P 69
           P
Sbjct: 142 P 142

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  + ++ N+      P I  EL +L FLDLS+       P++ + LS L VL++S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 62  NNSSGKIP 69
           NN      
Sbjct: 504 NNFFSLDT 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 16/60 (26%), Positives = 20/60 (33%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
          +LS N L    +        L  LDLSR         +   LS L  L L+ N       
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  ++   +NL       +   L +L +LD+S      +     + LS L VL ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 62  NNSSGKIPLG-----TQLQSFNAS 80
           N+               L   + S
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLS 478

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 15/68 (22%), Positives = 22/68 (32%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
               L  ++LSR  +          L+ L  L L+ N        + S LS L  L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 62  NNSSGKIP 69
            N +    
Sbjct: 110 TNLASLEN 117

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS-LSQLSGLGVLDLSY 61
              L  ++LS N +   ++     L  L+ LD   +        S    L  L  LD+S+
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 62  NNSSGKIP 69
            ++     
Sbjct: 431 THTRVAFN 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQL-SGLGVLDLSY 61
           L  L  +N+S NN     T     L SL  LD S N    S    L    S L  L+L+ 
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 62  NNSSGKIPL 70
           N+ +     
Sbjct: 553 NDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 3   LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGV----L 57
           L  L  +N++ N +    +      LT+L+ LDLS N       + L  L  + +    L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 58  DLSYNNSSGKIP 69
           DLS N  +   P
Sbjct: 183 DLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 1   MDLVGLIAVNLSRNNLT--GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLD 58
           +DL  L  ++LSRN L+  G  +      TSL +LDLS N     + S+   L  L  LD
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 59  LSYNNSSGKIPLGT 72
             ++N         
Sbjct: 403 FQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDF----LDLSRNLFSGSIPSSLSQLSGLGVL 57
           +L  L  ++LS N +       +  L  +      LDLS N  +   P +  ++  L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKL 205

Query: 58  DLSYNNSSGKIP 69
            L  N  S  + 
Sbjct: 206 TLRNNFDSLNVM 217

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 15/61 (24%), Positives = 16/61 (26%), Gaps = 3/61 (4%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
                N    I   +    S   LDLS N        S      L VLDLS        
Sbjct: 12 YQCMELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 69 P 69
           
Sbjct: 69 D 69

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRN--LFSGSIPSSLSQLSGLGVLDLSYNNSSG 66
            L+  +  G       +L SL+FLDLSRN   F G    S    + L  LDLS+N    
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGEL-TSLDFLDLSRNLFSGSIPSS--LSQLSGLGVLD 58
            L  L  ++ S N++      ++    +SL FL+L++N F+ +      L  +     L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 59  LSYNNSSGKIPL---GTQLQSFNAS 80
           +         P    G  + S N +
Sbjct: 576 VEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSYNNSSGKI 68
           +LS N +   I P   +   L  L L  N  S ++    +  L+GL V  L       + 
Sbjct: 183 DLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 69  PL 70
            L
Sbjct: 242 NL 243

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG----SIPSSLSQLSGLGVLDLSY 61
           +  ++L     +G +   IG+LT L+ L L  +          P  +S            
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 62  NNSSGKIPLGTQLQSF 77
            +           + F
Sbjct: 143 MHYQKTFVDYDPREDF 158

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 3   LVGLIAVNLSRNNLTG-------PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLG 55
           +  + A++ S N +         P+ P   +  ++  ++LS N  S       S  S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 56  VLDLSYNN 63
            ++L  N 
Sbjct: 461 SINLMGNM 468

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 10/78 (12%), Positives = 25/78 (32%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
           N            K   L  L  +++        +P+ L  L  + +++++ N       
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 70  LGTQLQSFNASVYAGNLE 87
           L    Q+   +     ++
Sbjct: 291 LKDDWQALADAPVGEKIQ 308

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSL------DFLDLSRNLFSGSIPSSLSQLSGLGV 56
           L  L+ ++LS N+ +     +    ++L      +  D   N      P  ++    L  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 57  LDLSYNNSSGKIP--LGTQLQSFNASVYAGNLELCGLPLANMCP 98
           L +  N+    +   +   +   +      N     + L+ +CP
Sbjct: 571 LQIGSNDIRK-VNEKITPNISVLDIK---DNP-NISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 9/91 (9%), Positives = 25/91 (27%), Gaps = 13/91 (14%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLF--------SGSIPSSLSQLSGL 54
           L  L  V +        +   +  L  +  ++++ N               +       +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 55  GVLDLSYNN-SSGKIPLG----TQLQSFNAS 80
            ++ + YNN  +  +        +L      
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 3   LVGLIAVNLSRNNLT--------GPITPKIGELTSLDFLDLSRN-LFSGSIPSSLSQLSG 53
           L  +  +N++ N                       +  + +  N L +  + +SL ++  
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 54  LGVLDLSYNNSSGKIP-LG--TQLQSFNAS 80
           LG+L+  YN   GK+P  G   +L S N +
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLA 361

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           +  L  +    N L G + P  G    L  L+L+ N  +    +       +  L  ++N
Sbjct: 329 MKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 63  NSSGKIPLGTQLQS 76
                IP     +S
Sbjct: 388 KLKY-IPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 9/83 (10%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L    +  +        +  E  + ++          +       L  L  +++  
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY-----KTEDLKWDNLKDLTDVEVYN 258

Query: 62  NNSSGKIPLG----TQLQSFNAS 80
             +  K+P       ++Q  N +
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVA 281

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 12/91 (13%)

Query: 2   DLVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSG-------SIPSSLSQLSG 53
               +  ++ + N L   P       ++ +  +D S N            +  +  +   
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 54  LGVLDLSYNNSSGKIP----LGTQLQSFNAS 80
           +  ++LS N  S         G+ L S N  
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLM 465

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 9/97 (9%), Positives = 25/97 (25%), Gaps = 6/97 (6%)

Query: 2   DLVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGSIPSSLS--QLSGLG 55
            L  L  + L  +             I    S +     R  +  +          S L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 56  VLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLP 92
              ++ +     I   +++   +  +   +  +  + 
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 3   LVGLIAVNLSRNNLTG-------PITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGL 54
              L ++NL  N LT                   L  +DL  N  +        + L  L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 55  GVLDLSYNN 63
             +DLSYN+
Sbjct: 516 VGIDLSYNS 524

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 1/69 (1%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           D   LI   ++ +     I            +    N  +  +  ++ +L+ L    +  
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGN 215

Query: 62  NNSSGKIPL 70
           +    +   
Sbjct: 216 SPFVAENIC 224

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  + +  N++   +  KI    ++  LD+  N       S +      G+  L Y+
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

Query: 63  NSS 65
            + 
Sbjct: 622 KTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 24  IGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL 70
           +     +  L L     SG +P ++ QL+ L VL L  +       L
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 7/84 (8%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLD--FLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
            +        R +               D     ++ +    SI  S         +   
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 61  YNNSSGKIPLG----TQLQSFNAS 80
            NN +  +       T+L+ F   
Sbjct: 192 SNNITF-VSKAVMRLTKLRQFYMG 214

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 12/77 (15%), Positives = 18/77 (23%)

Query: 4   VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           V     N                L  L  ++L        +P  L  L  L  L+++ N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 64  SSGKIPLGTQLQSFNAS 80
                 L          
Sbjct: 527 GISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 14/105 (13%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNL------FSGSIPSSLSQLSGLG 55
            L  L  +++S N  +     +    + L    +               P+ ++    L 
Sbjct: 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 56  VLDLSYNNSSGKIP--LGTQLQSFNASVYAGNLELCGLPLANMCP 98
            L +  N+   K+   L  QL   + +    N     + + ++CP
Sbjct: 810 QLQIGSNDIR-KVDEKLTPQLYILDIA---DN-PNISIDVTSVCP 849

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 14/92 (15%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG---------SIPSSLSQLSG 53
           L  L  V L        +   + +L  L  L+++ N              +         
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 54  LGVLDLSYNN-----SSGKIPLGTQLQSFNAS 80
           + +  + YNN     +S  +    +L   +  
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 3   LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
              L  ++L  N LT      +   L  L  +D+S N FS S P+     S L    + +
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRH 785

Query: 62  ------NNSSGKIPLG----TQLQSFNAS 80
                 N    + P G      L      
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIG 814

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 8e-09
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 17/92 (18%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFS-------GSIPSSLSQLSGLG 55
            +    V LS N +    T      + +  + LS NL +            +      L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 56  VLDLSYNNSSGKIPLGTQLQSFNASVYAGNLE 87
            +DL +N          +L S +    A  L 
Sbjct: 732 TIDLRFN----------KLTSLSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 3   LVGLIAVNLSRNNLTG-----PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVL 57
           +  + +V+ S N +         +    +  +   + LS N          +  S +  +
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 58  DLSYNN 63
            LS N 
Sbjct: 703 ILSNNL 708

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 3   LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
              +    +  NNL   P +  + ++  L  LD   N        +      L  L L Y
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDY 604

Query: 62  NN 63
           N 
Sbjct: 605 NQ 606

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 2/98 (2%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
           +  ++L+     G +   IG+LT L  L    +  + S      +     + +   +   
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 66  GKIP--LGTQLQSFNASVYAGNLELCGLPLANMCPDEE 101
                      Q  N S    +       +  +  D  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 2   DLVGLIAVNLSRNNLTGP---------ITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQL 51
           DL  L ++N++ N              +         +    +  N       S SL ++
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 52  SGLGVLDLSYNN 63
             LG+LD  +N 
Sbjct: 573 VKLGLLDCVHNK 584

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSL-SQLSGLGVLDLSY 61
           +V L  ++   N +        G    L  L L  N     IP    +    +  L  S+
Sbjct: 572 MVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628

Query: 62  NNSSGKIPLGTQLQS 76
           N     IP     +S
Sbjct: 629 NKLKY-IPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 2   DLVGLIAVNLSRNNLT-------GPITPKIGELTSLDFLDLSRNLFSGSIPSSL--SQLS 52
               +  + LS N +T        P          L  +DL  N  + S+      + L 
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753

Query: 53  GLGVLDLSYNN 63
            L  +D+SYN 
Sbjct: 754 YLSNMDVSYNC 764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  +  + +  T             +  +        +   S S L  L  ++L  
Sbjct: 446 RLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 62  NNSSGKIPLG----TQLQSFN 78
             +  ++P       +LQS N
Sbjct: 501 CPNMTQLPDFLYDLPELQSLN 521

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 11/66 (16%), Positives = 23/66 (34%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
           N   +         +     +  L L+     G +P ++ QL+ L VL    ++ +    
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 70  LGTQLQ 75
           L    +
Sbjct: 365 LFGDEE 370

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 10/85 (11%)

Query: 6   LIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSG-----SIPSSLSQLSGLGVLDL 59
           +  +  S N L   P       +  +  +D S N         S      +      + L
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 60  SYNNSSGKIP----LGTQLQSFNAS 80
           SYN            G+ + +   S
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILS 705

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 6/97 (6%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLS 60
            L  L  ++   ++ T        E  + D  +  ++          L     L + DL 
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 61  YN-----NSSGKIPLGTQLQSFNASVYAGNLELCGLP 92
            +          I   +++   +  +      +  + 
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRN-LFSGSIPSSLSQLSGLGVLDLSY 61
              LI + +  N++   +  K+     L  LD++ N   S  + S    +   G+  L Y
Sbjct: 805 CPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIE-AGMYVLLY 860

Query: 62  NNSS 65
           + + 
Sbjct: 861 DKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 9e-04
 Identities = 6/73 (8%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG------SIPSSLSQLSGLGVLDLSYNN 63
           +L ++ +     P++  +     + L              I  ++ +L+ L ++  + + 
Sbjct: 402 DLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 64  SSGKIPLGTQLQS 76
            +          +
Sbjct: 460 FTYDNIAVDWEDA 472

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 15/68 (22%), Positives = 22/68 (32%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  +NL  N           +L  L  +DL  N  +    S  +    L  L+L  
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 62  NNSSGKIP 69
           N  +    
Sbjct: 594 NLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
               L  ++L  N++         +  +L  LDLS N  S +   +  QL  L  L LS 
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 62  NN 63
           N 
Sbjct: 155 NK 156

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 3   LVGLIAVNLSRNNLTG--PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           L  L  + LS N +         I   +SL  L+LS N      P     +  L  L L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 61  YNNSSGKIPLGTQLQSFNAS 80
                  +     L+  N S
Sbjct: 204 NVQLGPSLTEKLCLELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  +NL  N L+          T+L  L L  N       +   +   L  LDLS+
Sbjct: 71  KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130

Query: 62  NN 63
           N 
Sbjct: 131 NG 132

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +    L  ++LS NNL          L  L++  L  N        SL  L  +  L+L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 61  YNNSSGKIPLGTQLQSFNASV 81
            + +   I L   L   +   
Sbjct: 305 RSFTKQSISL-ASLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPK-IGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  ++L  N +   +T +    L ++  + LS N +     +S + +  L  L L  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 62  NN 63
             
Sbjct: 464 VA 465

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 16/54 (29%), Positives = 22/54 (40%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
          NL+ N L           + L  LD+  N  S   P    +L  L VL+L +N 
Sbjct: 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNS 64
           L  +NL++N ++   +     L  L+ LDL  N     +       L  +  + LSYN  
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 65  SGKIP 69
                
Sbjct: 443 LQLTR 447

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 2   DLVGLIAVNLSRNNLT--------GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSG 53
            L  L  ++L  NNL         G     +  L+ L  L+L  N F          L  
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 54  LGVLDLSYNNSSGKIP 69
           L ++DL  NN +    
Sbjct: 562 LKIIDLGLNNLNTLPA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS--QLSGLGVLDL 59
               LI ++LS N L+        +L +L  L LS N         L     S L  L+L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 60  SYNNSSGKIP 69
           S N      P
Sbjct: 179 SSNQIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG--SIPSSLSQLSGLGVLDL 59
            L  +  + LS N            + SL  L L R       S PS    L  L +LDL
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 60  SYNN 63
           S NN
Sbjct: 488 SNNN 491

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS-QLSGLGVLDLS 60
           DL  L  ++L  NNL            SL  L+L +NL +             L  LD+ 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 61  YNNSSGKIPLGTQLQSF-----NASVYAGNLELCGLPLA 94
           +N             ++            +  LC  P  
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
               L ++++  N ++        +L  L  L+L  N  S     + +  + L  L L  
Sbjct: 47  RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106

Query: 62  NN 63
           N+
Sbjct: 107 NS 108

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 15/75 (20%), Positives = 26/75 (34%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS 65
               ++S  +L          L  L+ L++  N   G   +  + L  L  L LS + +S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 66  GKIPLGTQLQSFNAS 80
            +        S   S
Sbjct: 367 LRTLTNETFVSLAHS 381

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS---QLSGLGVLDL 59
              L  + LS N +          +  L  L L+      S+   L      + +  L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 60  SYNNSSGKIP 69
           S +  S    
Sbjct: 230 SNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 3   LVGLIAVNLSRNNLTG--PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +  L  + L R  L            L +L  LDLS N  +      L  L  L +LDL 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 61  YNN 63
           +NN
Sbjct: 513 HNN 515

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSI---------PSSLSQLS 52
            L  L    L  NN+    +  +  L ++ +L+L R+    SI           S   L 
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 53  GLGVLDLSYNN 63
            L  L++  N+
Sbjct: 330 CLEHLNMEDND 340

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRN--------LFSGSIPSSLSQLSGL 54
           L  L  ++LS NN+       +  L  L+ LDL  N           G     L  LS L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 55  GVLDLSYNNSSGKIP 69
            +L+L  N       
Sbjct: 539 HILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           + S   LT  +   +   T++  L+L+ N       ++ ++ S L  LD+ +N  S   
Sbjct: 9  ADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 69 P 69
          P
Sbjct: 66 P 66

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 3   LVGLIAVNLSRNNLTG----PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLD 58
           L+ L  ++LS +  +       T      + L  L+L++N  S     + S L  L VLD
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 59  LSYNNSSGKIPLGT 72
           L  N    ++    
Sbjct: 412 LGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGE---LTSLDFLDLSRNLFSGSIPSSLSQL--SGLGV 56
            +  L  + L+   L   +T K+      TS+  L LS +  S +  ++   L  + L +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 57  LDLSYNN 63
           LDLSYNN
Sbjct: 253 LDLSYNN 259

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS----QLSGLGVLD 58
           L  L  +N+  N++ G  +     L +L +L LS +  S    ++ +      S L +L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 59  LSYNN 63
           L+ N 
Sbjct: 388 LTKNK 392

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 9e-10
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           DL  L  +N+  N ++      +  L+ L+ L L+ N         +  L+ L  L LS 
Sbjct: 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N+ +   PL   +++ S + +
Sbjct: 321 NHITDIRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  + L+ +N++      +  LT +  L+L  N    S  S LS ++GL  L ++ +
Sbjct: 109 LTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTES 165

Query: 63  NSSGKIPLG--TQLQSFNAS 80
                 P+   T L S + +
Sbjct: 166 KVKDVTPIANLTDLYSLSLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  + ++NL  N+    ++P +  +T L++L ++ +      P  ++ L+ L  L L+Y
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N      PL   T L  F A 
Sbjct: 187 NQIEDISPLASLTSLHYFTAY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 2  DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
          DL   I   L + ++T  +T    EL S+  L ++    + SI   +  L+ L  L+L+ 
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNG 75

Query: 62 NNSSGKIPLG--TQLQSFNAS 80
          N  +   PL    +L +    
Sbjct: 76 NQITDISPLSNLVKLTNLYIG 96

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  +NL+ N +T  I+P +  L  L  L +  N  +    S+L  L+ L  L L+ +
Sbjct: 65  LTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNED 120

Query: 63  NSSGKIPLG--TQLQSFNAS 80
           N S   PL   T++ S N  
Sbjct: 121 NISDISPLANLTKMYSLNLG 140

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           ++  L ++ +  N +T  ++P +  L+ L +L++  N  S    +++  L+ L +L++  
Sbjct: 219 NMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N  S    L   +QL S   +
Sbjct: 275 NQISDISVLNNLSQLNSLFLN 295

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L ++ L+ N L       IG LT+L  L LS+N  +   P  L+ LS +   D +  
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 63  N 63
            
Sbjct: 344 V 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           + GL  + ++ + +       I  LT L  L L+ N      P  L+ L+ L       N
Sbjct: 154 MTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209

Query: 63  NSSGKIPLG--TQLQSFNAS 80
             +   P+   T+L S    
Sbjct: 210 QITDITPVANMTRLNSLKIG 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L       N +T      +  +T L+ L +  N  +   P  L+ LS L  L++  N
Sbjct: 198 LTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253

Query: 63  NSSGKIPLG--TQLQSFNAS 80
             S    +   T+L+  N  
Sbjct: 254 QISDINAVKDLTKLKMLNVG 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  +  + ++   +       I  LT+L++L+L+ N  +   P  LS L  L  L +  
Sbjct: 42  ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT 97

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N  +    L   T L+    +
Sbjct: 98  NKITDISALQNLTNLRELYLN 118

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
             GL  ++L+  +L+  +   +  L++L  L LS N F      S S    L  L +  N
Sbjct: 277 FSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 63  NSSGKIPLGT 72
               ++  G 
Sbjct: 336 TKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 11/61 (18%), Positives = 18/61 (29%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  +   +  ++      +    +L+ L L  N  S            L VLD   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 63  N 63
            
Sbjct: 164 A 164

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 13/62 (20%), Positives = 21/62 (33%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L+ L  ++L+R  +             LD L L+ N       ++LS    L  L    
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 62  NN 63
             
Sbjct: 115 TG 116

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 12/62 (19%), Positives = 18/62 (29%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
               L  + L+ N L       +    +L  L   +   S      L     L  L L  
Sbjct: 79  SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 62  NN 63
           N+
Sbjct: 139 NH 140

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +   L  ++L+   L           L  L  L+LS +L   S       L  L  L+L 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 61  YNNSSGKIPL 70
            N+       
Sbjct: 458 GNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLS 60
            L  L  + LS N              SL  L +  N     + +  L  L  L  LDLS
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 61  YNN 63
           +++
Sbjct: 359 HDD 361

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIG---ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLD 58
            L  L  +NL  N+       K      L  L+ L LS    S     + + L  +  +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 59  LSYNN 63
           LS+N 
Sbjct: 507 LSHNR 511

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +   L ++ L  N+++    PK      L  LD   N         +S L     L L+ 
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 62  N-NSSGKIPLGT 72
           N N    I  G 
Sbjct: 187 NGNDIAGIEPGA 198

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           + ++NL ++      +      + L  LDL+    S  +PS L  LS L  L LS N 
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
            LS  +L+         L  ++ +DLS N  + S   +LS L G+  L+L+ N+ S  +P
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  +  V+LS N LT      +  L  + +L+L+ N  S  +PS L  LS    ++L  
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 62  NN 63
           N 
Sbjct: 557 NP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 2   DLVGLIAVNLSRNNLT--GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDL 59
           +L  L  ++LS +++        ++  L+ L  L+LS N        +  +   L +LDL
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 60  SYNNSSGKIPLGT 72
           ++     K     
Sbjct: 408 AFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 14/54 (25%), Positives = 18/54 (33%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
            S N L          L +L FLDL+R         +      L  L L+ N 
Sbjct: 39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           N     L   I   +    S + L+ S N+      ++ S+L  L  LDL+        
Sbjct: 17 YNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 69 P 69
           
Sbjct: 74 E 74

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 3   LVGLIAVNLSRNNLTG--PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +  L        +     P   +     S++ ++L ++ F     ++    SGL  LDL+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 61  YNN 63
             +
Sbjct: 287 ATH 289

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  + +   ++T    P +  LTSL  LD+S +    SI + ++ L  +  +DLSY
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 62  NNSSGKI-PLG--TQLQSFNAS 80
           N +   I PL    +L+S N  
Sbjct: 146 NGAITDIMPLKTLPELKSLNIQ 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  +++S +     I  KI  L  ++ +DLS N     I   L  L  L  L++ ++
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD 169

Query: 63  NSSGKIPLG--TQLQSFNAS 80
                  +    +L    A 
Sbjct: 170 GVHDYRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              +  + ++  + T    P I  L++L+ L +     +     +LS L+ L +LD+S++
Sbjct: 65  AHNIKDLTINNIHATN-YNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 63  N 63
            
Sbjct: 123 A 123

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  + +++LS N     I P +  L  L  L++  +         +     L  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFS 190

Query: 62  NN 63
             
Sbjct: 191 QT 192

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  + +    L   +   + +   L+ L L+RN    ++P+S++ L+ L  L +  
Sbjct: 102 RLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 62  NNSSGKIP 69
                ++P
Sbjct: 160 CPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L ++ +  + L+  + P I  L  L+ LDL       + P      + L  L L   
Sbjct: 205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 63  NSSGKIPLG----TQLQSFNASVYAGNLELCGLP 92
           ++   +PL     TQL+  +     G + L  LP
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLR---GCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
               L  + L   +    +   I  LT L+ LDL   +    +PS ++QL    ++ +  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 62  NNSS 65
           +  +
Sbjct: 311 HLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 18/103 (17%)

Query: 3   LVGLIAVNLSRNN-LT--------GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSG 53
           L  L  +++     LT           + +   L +L  L L       S+P+S++ L  
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 54  LGVLDLSYNNSSGKIPLG----TQLQSFNASVYAGNLELCGLP 92
           L  L +  +  S  +        +L+  +     G   L   P
Sbjct: 208 LKSLKIRNSPLS-ALGPAIHHLPKLEELDLR---GCTALRNYP 246

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPK-IGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDL 59
           M L  L  ++   + L           L  L +LD+S              L+ L  L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 60  SYNNSSGKIPLG-----TQLQSFNAS 80
           + N+             T L   + S
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLS 481

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG-SIPSSLSQLSGLGVLDLSY 61
           L  L  +      L    +  IG+L +L  L+++ N      +P+  S L+ L  +DLSY
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 62  NN 63
           N 
Sbjct: 163 NY 164

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +   L  ++LS+  L          L  L  L++S N       S  +QL  L  LD S+
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 62  NNSSGKIP----LGTQLQSFNAS 80
           N               L  FN +
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  +N+S NNL    +    +L SL  LD S N    S          L   +L+ N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 63  N 63
           +
Sbjct: 556 S 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  + ++ N+        +    T+L FLDLS+             L  L +L++S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 62  NN 63
           NN
Sbjct: 507 NN 508

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 15/62 (24%), Positives = 21/62 (33%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +   L  ++LSR  +          L  L  L L+ N      P S S L+ L  L    
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 62  NN 63
             
Sbjct: 114 TK 115

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
            L+ N +          LTSL+ L       +      + QL  L  L++++N 
Sbjct: 86  ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 15/54 (27%), Positives = 21/54 (38%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
          +LS N L    +      + L +LDLSR         +   L  L  L L+ N 
Sbjct: 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
                 L+  +   I   +S   +DLS N        S S  S L  LDLS        
Sbjct: 16 YQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 69 P 69
           
Sbjct: 73 D 73

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 2   DLVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLG----V 56
            L+ L  +N++ N +    +      LT+L  +DLS N       + L  L         
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 57  LDLSYNN 63
           LD+S N 
Sbjct: 186 LDMSLNP 192

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNS 64
           L  ++LS N     ++     L  L  LD   +        S+   L  L  LD+SY N+
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 65  SGKIP 69
                
Sbjct: 437 KIDFD 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSYNNSSGKI 68
           ++S N +   I  +  +   L  L L  N  S +I    L  L+GL V  L         
Sbjct: 187 DMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD-- 243

Query: 69  PLGTQLQSFNASVYAGNLELCGLPL 93
                L+ F  S+  G  ++     
Sbjct: 244 --ERNLEIFEPSIMEGLCDVTIDEF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 3   LVGLIAVNLSRNNLT--GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           L  L  ++LSRN L+  G  +       SL  LDLS N     + ++   L  L  LD  
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQ 407

Query: 61  YNNSSGKIPLGT 72
           ++          
Sbjct: 408 HSTLKRVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSG--LGVLDL 59
           DL  L ++ L+ N  +  I+ K   L SL +LDLSRN  S S   S S L    L  LDL
Sbjct: 326 DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 60  SYNNSSGKIPLGTQLQS 76
           S+N +         L+ 
Sbjct: 384 SFNGAIIMSANFMGLEE 400

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDF----LDLSRNLFSGSIPSSLSQLSGLGVL 57
           +L  L+ V+LS N +       +  L         LD+S N        +   +  L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHEL 209

Query: 58  DLSYNNSSGKIP 69
            L  N +S  I 
Sbjct: 210 TLRGNFNSSNIM 221

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
               +  ++LS N L+      +   T L+ L+LS N+        L  LS L  LDL+ 
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNN 89

Query: 62  NNSSGKIPLGTQLQSFNAS 80
           N    ++ +G  +++ +A+
Sbjct: 90  NYVQ-ELLVGPSIETLHAA 107

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  ++LS N L   + P+      + ++ L  N     I  +L     L   DL  N
Sbjct: 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 63  N 63
            
Sbjct: 248 G 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
           ++ ++L   +        ++  LDLS N  S    + L+  + L +L+LS N     + 
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 70 LG--TQLQSFNAS 80
          L   + L++ + +
Sbjct: 76 LESLSTLRTLDLN 88

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           +  ++ + NN++  ++           + L+ N  +          S +  LDL  N 
Sbjct: 101 IETLHAANNNISR-VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG-SIPSSLSQLSGLGVLDLSY 61
             G   + L+ N +T       G  + + +LDL  N     +     +    L  L+L Y
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 62  NNSSGKIPLGTQLQS 76
           N     +        
Sbjct: 179 NFIY-DVKGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 3   LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
              +  ++L  N +             +L+ L+L  N     +   +   + L  LDLS 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSS 200

Query: 62  NN 63
           N 
Sbjct: 201 NK 202

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  ++L+ N +      ++    S++ L  + N  S  +  S     G   + L+ 
Sbjct: 78  SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLAN 129

Query: 62  NN 63
           N 
Sbjct: 130 NK 131

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  ++LS N L   + P+      + ++ L  N     I  +L     L   DL  N
Sbjct: 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 63  N 63
            
Sbjct: 248 G 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
               +  ++LS N L+      +   T L+ L+LS N+        L  LS L  LDL+ 
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNN 89

Query: 62  NNSSGKIPLGTQLQSFNAS 80
           N    ++ +G  +++ +A+
Sbjct: 90  NYVQ-ELLVGPSIETLHAA 107

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           ++ ++L   +        ++  LDLS N  S    + L+  + L +L+LS N 
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              +  ++ + NN++  ++           + L+ N  +          S +  LDL  N
Sbjct: 98  GPSIETLHAANNNISR-VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 63  N 63
            
Sbjct: 155 E 155

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 3   LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
              +  ++L  N +             +L+ L+L  N     +   +   + L  LDLS 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSS 200

Query: 62  NN 63
           N 
Sbjct: 201 NK 202

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  ++L+ N +      ++    S++ L  + N  S  +  S     G   + L+ 
Sbjct: 78  SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLAN 129

Query: 62  NN 63
           N 
Sbjct: 130 NK 131

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  L  + L  NN++  I+P +  LT L  L    N  S    SSL+ L+ +  L   +
Sbjct: 307 NLKNLTYLTLYFNNISD-ISP-VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N  S   PL   T++     +
Sbjct: 363 NQISDLTPLANLTRITQLGLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  + L  N ++      +  LT+L  L+L+ N      P  +S L  L  L L +
Sbjct: 263 GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           NN S   P+   T+LQ     
Sbjct: 319 NNISDISPVSSLTKLQRLFFY 339

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L ++  + N ++  ITP +G LT+LD L L+ N        +L+ L+ L  LDL+ N
Sbjct: 198 LTNLESLIATNNQISD-ITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 253

Query: 63  NSSGKIPLG--TQLQSFNAS 80
             S   PL   T+L      
Sbjct: 254 QISNLAPLSGLTKLTELKLG 273

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 3  LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
          L   +   L + N+T  ++    +L  +  L   R          +  L+ L  ++ S N
Sbjct: 23 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNN 78

Query: 63 NSSGKIPLG--TQLQSFNAS 80
            +   PL   T+L     +
Sbjct: 79 QLTDITPLKNLTKLVDILMN 98

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  ++L+ N ++      +  LT L  L L  N  S   P  L+ L+ L  L+L+ 
Sbjct: 241 SLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N      P+     L      
Sbjct: 297 NQLEDISPISNLKNLTYLTLY 317

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  +N S N LT  ITP +  LT L  + ++ N  +   P  L+ L+ L  L L  N
Sbjct: 67  LNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122

Query: 63  NSSGKIPLG--TQLQSFNAS 80
             +   PL   T L     S
Sbjct: 123 QITDIDPLKNLTNLNRLELS 142

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  L  + LS N ++      +  LTSL  L     +   +    L+ L+ L  LD+S 
Sbjct: 132 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISS 186

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N  S    L   T L+S  A+
Sbjct: 187 NKVSDISVLAKLTNLESLIAT 207

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  L  + L  N +T      +  LT+L+ L+LS N  S    S+LS L+ L  L    
Sbjct: 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG- 164

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N  +   PL   T L+  + S
Sbjct: 165 NQVTDLKPLANLTTLERLDIS 185

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +L  L+ + ++ N +       +  LT+L  L L  N  +   P  L  L+ L  L+LS 
Sbjct: 88  NLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143

Query: 62  NNSSGKIPLG--TQLQSFN 78
           N  S    L   T LQ  +
Sbjct: 144 NTISDISALSGLTSLQQLS 162

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  +    N ++      +  LT++++L    N  S   P  L+ L+ +  L L+  
Sbjct: 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 63  NSSGKIPLGTQLQSFNASVYAGNLEL 88
             +          S   +V      L
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  ++   N +T      +  LT+L+ LD+S N  S    S L++L+ L  L  + 
Sbjct: 154 GLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 208

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N  S   PLG  T L   + +
Sbjct: 209 NQISDITPLGILTNLDELSLN 229

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 9   VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           ++L+  +LT      + +L  +  LDLS N    ++P +L+ L  L VL  S N 
Sbjct: 446 LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 6e-06
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L+ +  ++LS N L   + P +  L  L+ L  S N    ++   ++ L  L  L L  N
Sbjct: 462 LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNN 518

Query: 63  N 63
            
Sbjct: 519 R 519

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG-SIPSSLSQLSGLGVLDLSY 61
           L  L  +  S N L       +  L  L  L L  N     +    L     L +L+L  
Sbjct: 485 LRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

Query: 62  N 62
           N
Sbjct: 543 N 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  + ++ N+      P I  EL +L FLDLS+       P++ + LS L VL+++ 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 62  NN 63
           N 
Sbjct: 504 NQ 505

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSY 61
           L  LI +++S  +           L+SL+ L ++ N F  +      ++L  L  LDLS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 62  NN 63
             
Sbjct: 480 CQ 481

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 12/87 (13%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS-LSQLSGLGVLDLSY 61
              L  ++LS N +   ++     L  L+ LD   +        S    L  L  LD+S+
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLEL 88
                        +     ++ G   L
Sbjct: 431 T----------HTRVAFNGIFNGLSSL 447

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 3   LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  ++   +NL           L +L +LD+S      +     + LS L VL ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 62  NN 63
           N+
Sbjct: 455 NS 456

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 12/62 (19%), Positives = 22/62 (35%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  + L+ N +          L+SL  L       +      +  L  L  L++++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 62  NN 63
           N 
Sbjct: 134 NL 135

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 3   LVGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGV----L 57
           L  L  +N++ N +    +      LT+L+ LDLS N       + L  L  + +    L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 58  DLSYNN 63
           DLS N 
Sbjct: 183 DLSLNP 188

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 10  NLSRNNLT--GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           +LSRN L+  G  +      TSL +LDLS N    ++ S+   L  L  LD  ++N
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/55 (27%), Positives = 16/55 (29%), Gaps = 3/55 (5%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
                N    I   +    S   LDLS N        S      L VLDLS   
Sbjct: 12 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +   L  +++S NNL   I        TSL  L LS N  +  +   LS +  L   ++S
Sbjct: 145 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVS 200

Query: 61  YNNSSGKIPLGTQLQSFNAS 80
           YN  S  + +   ++  +AS
Sbjct: 201 YNLLS-TLAIPIAVEELDAS 219

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +  GL+ V+LS N L   I      ++  L+ L +S N    ++      +  L VLDLS
Sbjct: 252 NYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 61  YNN 63
           +N+
Sbjct: 310 HNH 312

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
            V L  + L  NNLT      +     L  +DLS N     +     ++  L  L +S N
Sbjct: 231 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 63  N 63
            
Sbjct: 289 R 289

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           +  L   N+S N L+      +    +++ LD S N  +  +   +     L +L L +N
Sbjct: 191 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 242

Query: 63  N 63
           N
Sbjct: 243 N 243

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
            + L ++    N L     P++  L  L  +    NL   ++P     L     L++  N
Sbjct: 214 PLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDN 267

Query: 63  NSSGKIPLGTQLQSFNASVYAGNLELCGLP 92
             +    L   L   + S         GL 
Sbjct: 268 YLTDLPELPQSLTFLDVS----ENIFSGLS 293

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 6/61 (9%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  +    N L     P++  L  L  +    N     +P     L     +    N
Sbjct: 172 PPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNN 225

Query: 63  N 63
            
Sbjct: 226 I 226

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           L  + +S N L     P++   + L  +D+  N     +P     L     +    N 
Sbjct: 133 LEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQ 184

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 16/86 (18%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS---------------SLSQLSGL 54
             S N+LT  +      L SL   + +    S   P                 L   S L
Sbjct: 97  VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFL 155

Query: 55  GVLDLSYNNSSGKIPLGTQLQSFNAS 80
            ++D+  N+      L   L+   A 
Sbjct: 156 KIIDVDNNSLKKLPDLPPSLEFIAAG 181

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +  GL+ V+LS N L   I      ++  L+ L +S N    ++      +  L VLDLS
Sbjct: 246 NYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 61  YNN 63
           +N+
Sbjct: 304 HNH 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
            V L  + L  NNLT      +     L  +DLS N     +     ++  L  L +S N
Sbjct: 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 63  N 63
            
Sbjct: 283 R 283

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           ++  L  + L RN+L+  +   I      L  L +S N        +    + L  L LS
Sbjct: 115 NVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173

Query: 61  YNN 63
            N 
Sbjct: 174 SNR 176

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 6/64 (9%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDL 59
           + L     V    + +   +   +      ++ L+L+          + +    +  L +
Sbjct: 42  ITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100

Query: 60  SYNN 63
            +N 
Sbjct: 101 GFNA 104

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 6/58 (10%)

Query: 10  NLSRNNLTGPITPKIGELTSL----DFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           ++S N L   +               F     N  +  IP ++  L     + L  N 
Sbjct: 186 DVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 2  DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
                    +RN        K   +     L L+R   S S+P +L     + VL+++ 
Sbjct: 35 KWEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQ 89

Query: 62 NN 63
          N 
Sbjct: 90 NA 91

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
            L  L  + L        I  +    L +L  LDL  +      P +   L  L  L L 
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105

Query: 61  YNN 63
           +  
Sbjct: 106 FCG 108

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
                NLT    P++  L + + L LS N       SS   L  L +L+L    +   I
Sbjct: 9  AFYRFCNLTQ--VPQV--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 69 PLGT 72
              
Sbjct: 65 DKEA 68

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 2   DLVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSG--LGVLD 58
           +L  L  ++LS+N +    + P  G+L SL  +D S N         L  L G  L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 59  LSYNNSSGKIPLG 71
           L+ N+   ++ + 
Sbjct: 181 LAANSLYSRVSVD 193

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 15/91 (16%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGE-----LTSLDFLDLSRNLFSGSIPSSLSQLSGLGVL 57
              L  + L  N L      ++       L+ L  L L+ N  +   P   S L+ L  L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 58  DLSYNNSSGKIPLGTQLQSFNASVYAGNLEL 88
            L+ N           L   + +    NLE+
Sbjct: 510 SLNSNR----------LTVLSHNDLPANLEI 530

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
            L  L  +NL+ N +   I  +    L +L  L+LS NL      S+   L  +  +DL 
Sbjct: 288 TLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 61  YNN 63
            N+
Sbjct: 347 KNH 349

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  +NLS N L    +     L  + ++DL +N  +     +   L  L  LDL  N
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372

Query: 63  NSSGKIPLGTQLQSFNAS 80
             +  I     +     S
Sbjct: 373 ALT-TIHFIPSIPDIFLS 389

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSI--PSSLSQLSGLGVLD 58
           +L  L  ++L  + +   + P     L  L  L L     S ++        L  L  LD
Sbjct: 71  NLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 59  LSYNN 63
           LS N 
Sbjct: 130 LSKNQ 134

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 2   DLVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSL-----SQLSGLG 55
            +  L  + L++N  +         E  SL+ L L  N+   +  + L       LS L 
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 56  VLDLSYNN 63
           VL L++N 
Sbjct: 484 VLYLNHNY 491

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 3   LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            V L  ++LS N+L      P     + L+ L+LS       +P  L     L VLDLSY
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSY 283

Query: 62  NNSSGKIPLGTQLQS 76
           N      P   +L  
Sbjct: 284 NRLDR-NPSPDELPQ 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 5   GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS----QLSGLGVLDLS 60
           GL  +++++ +       ++    +L  LDLS N   G      +    +   L VL L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 61  YNN 63
              
Sbjct: 210 NAG 212

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQ-LSGLGVLDLSY 61
           L  L   N      +G  +        L  LDLS N    +  +      S L  L+LS+
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 62  NN-SSGKIPLGTQLQSFNAS 80
                    L  +L   + S
Sbjct: 263 TGLKQVPKGLPAKLSVLDLS 282

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI----GELTSLDFLDLSRNLF---SGSIPSSLSQLSGLG 55
              L  ++LS N   G           +  +L  L L        SG   +  +    L 
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 56  VLDLSYNN 63
            LDLS+N+
Sbjct: 232 GLDLSHNS 239

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN-SSGKI 68
            +S N LT    P     + L  L + RN  +  +P SL  LS    ++L  N  S   +
Sbjct: 247 MVSGNRLT--SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301

Query: 69  PLGTQLQSFNASVYAGNLELCGLPLANMCPDEESTPSPGTDDDSDTLEDEDDQFITL 125
               ++ S  A  Y+G +    +  A+   +  +      D      E E       
Sbjct: 302 QALREITS--APGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 6   LIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
           +  + +  NNLT  +     EL +L+   +S N  + S+P     L  L +      +
Sbjct: 63  ITTLVIPDNNLTS-LPALPPELRTLE---VSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
            +S N LT  +      L  L             +P+  S L     L +  N  +    
Sbjct: 87  EVSGNQLTS-LPVLPPGLLELSIFSNPLT----HLPALPSGLC---KLWIFGNQLTSLPV 138

Query: 70  LGTQLQSFNASVYAGNLELCGLP 92
           L   LQ  + S    + +L  LP
Sbjct: 139 LPPGLQELSVS----DNQLASLP 157

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 5  GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
          G   +N+  + LT  +   +     +  L +  N  + S+P+   +L     L++S N 
Sbjct: 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQ 92

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDL 59
            L  LI +++S  +        I   L+SL+ L ++ N F  +      ++L  L  LDL
Sbjct: 124 SLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 60  SYNN 63
           S   
Sbjct: 183 SQCQ 186

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 3   LVGLIAVNLSRNNLT-GPITPKIGE-LTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           L  L  ++LS N L+      +     TSL +LDLS N    ++ S+   L  L  LD  
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109

Query: 61  YNN 63
           ++N
Sbjct: 110 HSN 112

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSL-SQLSGLGVLDLSY 61
              L  ++LS N +   ++     L  L+ LD   +        S+   L  L  LD+S+
Sbjct: 77  TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 62  NN 63
            +
Sbjct: 136 TH 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
              L  +NL R  LT       G L  L  LDLS N    S+P     L  L VLD+S+N
Sbjct: 54  YTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 63  NSSGKIPLGTQLQSFNASVYAGNLELCGLPLAN 95
                     +L S       G  EL  L L  
Sbjct: 111 ----------RLTSLPLGALRGLGELQELYLKG 133

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  +NL   N+     P +  L  L+ L++S N F    P S   LS L  L +  
Sbjct: 194 GLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 62  NN 63
           + 
Sbjct: 252 SQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDL 59
            L  L  + L  N LT  I       L+ L  L L  N    SIPS + +++  L  LDL
Sbjct: 121 GLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178

Query: 60  SYNNSSGKIPLGT 72
                   I  G 
Sbjct: 179 GELKKLEYISEGA 191

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSL-SQLSGLGVLDL 59
            L  L  + L  N LT  I       L+ L  L L  N    SIPS   +++  L  LDL
Sbjct: 110 GLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167

Query: 60  SYNNSSGKIPLGT 72
                   I  G 
Sbjct: 168 GELKRLSYISEGA 180

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  +NL+  NL     P +  L  LD LDLS N  S   P S   L  L  L +  
Sbjct: 183 GLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 62  NN 63
           + 
Sbjct: 241 SQ 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
            L  L  + L + NLT  I  +    L  L  L L     +     S  +L  L VL++S
Sbjct: 150 GLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 61  YNNSSGKIP 69
           +      + 
Sbjct: 209 HWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLS 60
            L  L  + +S       +TP      +L  L ++    + ++P  ++  L  L  L+LS
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLS 256

Query: 61  YNN 63
           YN 
Sbjct: 257 YNP 259

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           +L  L  + L  N L   I   +   L++L  LD+S N     +      L  L  L++ 
Sbjct: 78  NLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 61  YNN 63
            N+
Sbjct: 137 DND 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 10 NLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
          +L +N +   +          L+ L+L+ N+ S   P + + L  L  L L  N 
Sbjct: 38 DLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 2  DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
               I  NL + ++T  +T    EL S+D +  + +    S+   +  L  +  L L+ 
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 62 NN 63
          N 
Sbjct: 75 NK 76

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 2   DLVGLIAVNLSRNNLT--GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDL 59
               L  + LS+N+L         +  L +L  LD+SRN F   +P S      +  L+L
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 60  SYNN 63
           S   
Sbjct: 418 SSTG 421

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 13/87 (14%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
           +    + T  I   +    ++  LDLS N  +      L   + L VL L  +      
Sbjct: 10 CDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS------ 60

Query: 69 PLGTQLQSFNASVYAGNLELCGLPLAN 95
              ++ +     +     L  L L++
Sbjct: 61 ----RINTIEGDAFYSLGSLEHLDLSD 83

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG-SIPSSLSQLSGLGVLDLSY 61
           L  L  ++LS N+L+   +   G L+SL +L+L  N +    + S    L+ L  L +  
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 62  NNSSGKIPLGT 72
             +  +I    
Sbjct: 133 VETFSEIRRID 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 3   LVGLIAVNLSRNNLTGPITPK-IGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  + +        I       LTSL+ L++           SL  +  +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 62  NN 63
           + 
Sbjct: 182 SE 183

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPK---IGELTSLDFLDLSRNLFS--GSIPSSLSQLSGLGVL 57
           L  L  ++LS N +           G   SL  L LS+N           L  L  L  L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 58  DLSYNN 63
           D+S N 
Sbjct: 393 DISRNT 398

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
          +LS N +T      +    +L  L L  +  +     +   L  L  LDLS N+
Sbjct: 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L ++++SRN    P+         + FL+LS       + + +     L VLD+S N
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNN 441

Query: 63  N 63
           N
Sbjct: 442 N 442

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           + L  L  + +SRN L     P       L  + +SRN           +L+ L  + L 
Sbjct: 448 LFLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 61  YNN 63
            N 
Sbjct: 506 TNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
           ++ V +  +++ +  L   ++     L  +  + +  +       S    L  L  LDLS
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 61  YNN 63
            N 
Sbjct: 343 ENL 345

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
              L  + L  + +   I       L SL+ LDLS N  S    S    LS L  L+L  
Sbjct: 49  CANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 62  NN 63
           N 
Sbjct: 108 NP 109

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
              L  + L  N +   I       L +L  L L  N  S  +P+ L  L  L V+ L  
Sbjct: 216 YSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 62  NN 63
           NN
Sbjct: 274 NN 275

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
          V+ S+N L   +   +        L++S+N  S    S +  LS L +L +S+N      
Sbjct: 5  VDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN------ 55

Query: 69 PLGTQLQSFNASVYAGNLELCGLPLAN 95
              ++Q  + SV+  N EL  L L++
Sbjct: 56 ----RIQYLDISVFKFNQELEYLDLSH 78

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
          N+S+N ++   T  I  L+ L  L +S N       S       L  LDLS+N 
Sbjct: 27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 3   LVGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            V L  ++LS N     PI  + G ++ L FL LS      S    ++ L+   VL +  
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 62  NNSSGKIPLGT 72
                K     
Sbjct: 149 ETYGEKEDPEG 159

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 24/63 (38%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
            L  N ++           +L  L L  N+ +    ++ + L+ L  LDLS N     + 
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 70  LGT 72
             T
Sbjct: 98  PAT 100

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSS-LSQLSGLGVLDLS 60
              L  + L  N L   I       L  L+ LDLS N    S+  +    L  L  L L 
Sbjct: 55  CRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 61  YNN 63
              
Sbjct: 114 RCG 116

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 10  NLSRNNLTGPITPKI--GELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSYNNSSG 66
           +LS NNL+  +  +     LT+L  L LS N  +  I S +   +  L  LDLS N    
Sbjct: 45  DLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN---- 98

Query: 67  KIPLGTQLQSFNASVYAGNLELCGLPLAN 95
                  L + +  +++    L  L L N
Sbjct: 99  ------HLHTLDEFLFSDLQALEVLLLYN 121

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 3   LVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L  L  + LS N+++  +          L  L L+ N     +P  L+    + V+ L  
Sbjct: 215 LNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 62  NNSSGKIPLGTQLQSFNASVYAGNLELCGLP 92
           N           + +  ++ +          
Sbjct: 273 N----------NISAIGSNDFCPPGYNTKKA 293

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLS 60
            +  L  + ++  N+T  I    G   SL  L L  N  +  + + SL  L+ L  L LS
Sbjct: 169 GMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 61  YNN 63
           +N+
Sbjct: 225 FNS 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 3  LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
          L   I +   ++N+T  +T    +L  +  L       + +I   +  L+ L  L+L  N
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDN 73

Query: 63 NSSGKIPLG--TQLQSFNAS 80
            +   PL   T++     S
Sbjct: 74 QITDLAPLKNLTKITELELS 93

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  LI + L  N +T  + P +  LT +  L+LS N    ++ S+++ L  +  LDL+  
Sbjct: 62  LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NV-SAIAGLQSIKTLDLTST 117

Query: 63  NSSGKIPLG--TQLQSFNAS 80
             +   PL   + LQ     
Sbjct: 118 QITDVTPLAGLSNLQVLYLD 137

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
            L  L  + L  N +T  I+P +  LT+L +L +     S  + + L+ LS L  L    
Sbjct: 127 GLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADD 182

Query: 62  NNSSGKIPLG--TQLQSFNAS 80
           N  S   PL     L   +  
Sbjct: 183 NKISDISPLASLPNLIEVHLK 203

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKI-GELTSLDFLDLSRNLFSGSIPSS-LSQLSGLGVLDL 59
            L  L  + + +      I       L+SL  L L  N F   + +   + L+ L VL L
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTL 110

Query: 60  SYNN-SSGKIPLGT 72
           +  N     +    
Sbjct: 111 TQCNLDGAVLSGNF 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.48
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.39
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.38
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.38
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.36
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.32
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.3
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.21
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.18
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.16
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.12
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.07
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.03
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.02
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.01
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.01
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.01
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.0
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.99
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.99
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.98
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.97
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.7
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.54
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.34
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.32
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.02
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.73
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.63
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.32
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.13
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.89
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.04
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	92.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.04
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	91.1
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	90.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	89.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.0
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	88.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	87.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	86.03

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=2.1e-18  Score=152.65  Aligned_cols=98  Identities=39%  Similarity=0.665  Sum_probs=89.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      +++.|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|...++.++....
T Consensus       654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~  733 (768)
T 3rgz_A          654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK  733 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred             ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence            57788899999999999999999999999999999999999999999999999999999999999999998999999999


Q ss_pred             ccCCcCCCCCCCCCCCCCC
Q 045886           82 YAGNLELCGLPLANMCPDE  100 (184)
Q Consensus        82 ~~~N~~lc~~~~~~~C~~~  100 (184)
                      +.||+++||.|+. .|...
T Consensus       734 ~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          734 FLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             GCSCTEEESTTSC-CCCSC
T ss_pred             hcCCchhcCCCCc-CCCCC
Confidence            9999999999886 78644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=4.2e-15  Score=110.69  Aligned_cols=92  Identities=26%  Similarity=0.257  Sum_probs=81.5

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .++.|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|++|++++|++++.+|.. ..+.++..+
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            4678999999999999888889999999999999999999877778999999999999999999888765 567788899


Q ss_pred             cccCCcCCCCCCC
Q 045886           81 VYAGNLELCGLPL   93 (184)
Q Consensus        81 ~~~~N~~lc~~~~   93 (184)
                      ++.+|++.|.++.
T Consensus       132 ~L~~N~l~c~c~l  144 (192)
T 1w8a_A          132 NLASNPFNCNCHL  144 (192)
T ss_dssp             ECTTCCBCCSGGG
T ss_pred             EeCCCCccCcCcc
Confidence            9999999998754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=2.4e-14  Score=104.68  Aligned_cols=89  Identities=21%  Similarity=0.142  Sum_probs=80.1

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~   82 (184)
                      +.|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|++|++++|++++..+.. ..+.++..+++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            57899999999999887888999999999999999999666667899999999999999999887763 67889999999


Q ss_pred             cCCcCCCCCC
Q 045886           83 AGNLELCGLP   92 (184)
Q Consensus        83 ~~N~~lc~~~   92 (184)
                      .+|++.|.|+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=1.7e-14  Score=107.65  Aligned_cols=92  Identities=22%  Similarity=0.220  Sum_probs=78.1

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      +++.|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus        52 ~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A           52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL  131 (193)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE
Confidence            4678899999999999776777999999999999999999777778999999999999999998766643 567788889


Q ss_pred             cccCCcCCCCCCC
Q 045886           81 VYAGNLELCGLPL   93 (184)
Q Consensus        81 ~~~~N~~lc~~~~   93 (184)
                      ++.+|++.|+|.+
T Consensus       132 ~L~~N~~~C~c~l  144 (193)
T 2wfh_A          132 AIGANPLYCDCNM  144 (193)
T ss_dssp             ECCSSCEECSGGG
T ss_pred             EeCCCCeecCCcC
Confidence            9999999998753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.53  E-value=6.5e-15  Score=117.43  Aligned_cols=94  Identities=38%  Similarity=0.608  Sum_probs=85.5

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      ++++|+.|+|++|.+++.+|. +..+++|++|++++|.++|.+|..+..+++|+.|++++|+++|.+|....+.++..++
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~  297 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA  297 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred             cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence            578899999999999976665 8889999999999999999999999999999999999999999999988899999999


Q ss_pred             ccCCcCCCCCCCCCCC
Q 045886           82 YAGNLELCGLPLANMC   97 (184)
Q Consensus        82 ~~~N~~lc~~~~~~~C   97 (184)
                      +.+|+++||.|+. .|
T Consensus       298 l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          298 YANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TCSSSEEESTTSS-CC
T ss_pred             hcCCCCccCCCCC-CC
Confidence            9999999997765 45

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.53  E-value=1.8e-14  Score=123.34  Aligned_cols=92  Identities=24%  Similarity=0.205  Sum_probs=83.4

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-ccc-ccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQL-QSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l-~~l~~   79 (184)
                      .+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|+.||+++|++++.+|.. ..+ .++..
T Consensus       492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~  571 (635)
T 4g8a_A          492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  571 (635)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred             hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence            5788999999999999888899999999999999999999888888999999999999999999998876 334 67889


Q ss_pred             ccccCCcCCCCCCC
Q 045886           80 SVYAGNLELCGLPL   93 (184)
Q Consensus        80 ~~~~~N~~lc~~~~   93 (184)
                      +++++||+.|+|.+
T Consensus       572 L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          572 LNLTQNDFACTCEH  585 (635)
T ss_dssp             EECTTCCBCCSGGG
T ss_pred             EEeeCCCCcccCCc
Confidence            99999999999853

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=2.5e-14  Score=108.69  Aligned_cols=91  Identities=23%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|.. ..+.++..+
T Consensus        79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            4566777777777777655556777777777777777777666777777777788888888777776654 456677777


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+|++.|.|+
T Consensus       159 ~L~~N~l~c~c~  170 (220)
T 2v70_A          159 NLLANPFNCNCY  170 (220)
T ss_dssp             ECCSCCEECSGG
T ss_pred             EecCcCCcCCCc
Confidence            888888888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=4.7e-14  Score=103.58  Aligned_cols=89  Identities=19%  Similarity=0.109  Sum_probs=78.9

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~~   82 (184)
                      +.|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++++.++. ...+.++..+++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            5789999999999988888999999999999999999965555678999999999999999987776 367888999999


Q ss_pred             cCCcCCCCCC
Q 045886           83 AGNLELCGLP   92 (184)
Q Consensus        83 ~~N~~lc~~~   92 (184)
                      .+|++.|.|.
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999999764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.50  E-value=3.1e-14  Score=127.21  Aligned_cols=87  Identities=25%  Similarity=0.226  Sum_probs=62.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.  ++|+.||+++|++++.+|..  +.++..+++
T Consensus       479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l  554 (844)
T 3j0a_A          479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDI  554 (844)
T ss_dssp             BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEE
T ss_pred             cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEe
Confidence            45666777777777766666677777777777777777754444443  67777777777777777653  557788899


Q ss_pred             cCCcCCCCCCC
Q 045886           83 AGNLELCGLPL   93 (184)
Q Consensus        83 ~~N~~lc~~~~   93 (184)
                      .+||+.|.|+.
T Consensus       555 ~~Np~~C~c~~  565 (844)
T 3j0a_A          555 THNKFICECEL  565 (844)
T ss_dssp             EEECCCCSSSC
T ss_pred             cCCCccccccc
Confidence            99999998864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=9e-14  Score=105.61  Aligned_cols=92  Identities=23%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|++|+|++|+++...+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence            4566677777777777333333566777777777777777666666777777777777777777666543 456677777


Q ss_pred             cccCCcCCCCCCC
Q 045886           81 VYAGNLELCGLPL   93 (184)
Q Consensus        81 ~~~~N~~lc~~~~   93 (184)
                      ++.+|++.|.|.+
T Consensus       158 ~L~~N~~~c~c~l  170 (220)
T 2v9t_B          158 HLAQNPFICDCHL  170 (220)
T ss_dssp             ECCSSCEECSGGG
T ss_pred             EeCCCCcCCCCcc
Confidence            8888888887643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.48  E-value=7.2e-14  Score=112.42  Aligned_cols=91  Identities=19%  Similarity=0.153  Sum_probs=80.2

Q ss_pred             CCcCCceeeecc-CCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886            2 DLVGLIAVNLSR-NNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~   80 (184)
                      .+++|+.|+|++ |+|++..|..|.+|++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++.++.......|..+
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l  108 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL  108 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEE
Confidence            467899999996 9999777788999999999999999999888889999999999999999999877765433348889


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      .+.+|++.|.|.
T Consensus       109 ~l~~N~~~c~c~  120 (347)
T 2ifg_A          109 VLSGNPLHCSCA  120 (347)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EeeCCCccCCCc
Confidence            999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=2.8e-13  Score=103.40  Aligned_cols=90  Identities=23%  Similarity=0.242  Sum_probs=65.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+++|+.|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+.. ..+.++..+
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            4566777777777777544455677777777777777777 67777777788888888888887665543 456777788


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+|++.|.|+
T Consensus       165 ~l~~N~~~c~c~  176 (229)
T 3e6j_A          165 YLFGNPWDCECR  176 (229)
T ss_dssp             ECTTSCBCTTBG
T ss_pred             EeeCCCccCCcc
Confidence            888888888764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.45  E-value=1.1e-13  Score=122.37  Aligned_cols=87  Identities=33%  Similarity=0.481  Sum_probs=81.3

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      +++.|+.|||++|+++|.+|..+++++.|+.|+|++|+++|.+|..++.+++|+.||+++|+++|.+|.. ..++.+..+
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            4678999999999999999999999999999999999999999999999999999999999999999987 678888999


Q ss_pred             cccCCcCC
Q 045886           81 VYAGNLEL   88 (184)
Q Consensus        81 ~~~~N~~l   88 (184)
                      ++++|+..
T Consensus       710 ~ls~N~l~  717 (768)
T 3rgz_A          710 DLSNNNLS  717 (768)
T ss_dssp             ECCSSEEE
T ss_pred             ECcCCccc
Confidence            99988754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=4.1e-13  Score=98.20  Aligned_cols=89  Identities=22%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +++|++|+|++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.++.. ..+.++..++
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            344555555555555333333445555555555555555333333445555555555555555433332 2344455555


Q ss_pred             ccCCcCCCCC
Q 045886           82 YAGNLELCGL   91 (184)
Q Consensus        82 ~~~N~~lc~~   91 (184)
                      +.+|++.|.+
T Consensus       131 l~~N~~~~~~  140 (177)
T 2o6r_A          131 LHTNPWDCSC  140 (177)
T ss_dssp             CCSSCBCCCH
T ss_pred             ecCCCeeccC
Confidence            5555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.39  E-value=2e-12  Score=96.79  Aligned_cols=91  Identities=25%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+.. ..+.++..+
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence            3456666666666666444444566666666666666666444444666667777777777766555542 445666777


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+|++.|.++
T Consensus       154 ~l~~N~~~~~~~  165 (208)
T 2o6s_A          154 WLHDNPWDCTCP  165 (208)
T ss_dssp             ECCSCCBCCCTT
T ss_pred             EecCCCeecCCC
Confidence            777777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.38  E-value=2.3e-12  Score=99.29  Aligned_cols=89  Identities=24%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+.. ..+.++..+
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            3455666666666666443344566666666666666666444445666666667777777666555533 445666667


Q ss_pred             cccCCcCCCC
Q 045886           81 VYAGNLELCG   90 (184)
Q Consensus        81 ~~~~N~~lc~   90 (184)
                      ++.+|++.|.
T Consensus       185 ~l~~N~~~c~  194 (251)
T 3m19_A          185 TLFGNQFDCS  194 (251)
T ss_dssp             ECCSCCBCTT
T ss_pred             EeeCCceeCC
Confidence            7777777765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.38  E-value=2.5e-12  Score=100.33  Aligned_cols=91  Identities=26%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.. ..+.++..+
T Consensus       131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence            3566777777777777554455667777777777777777555555667777777777777777666653 456677777


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+|++.|.++
T Consensus       211 ~l~~N~~~~~~~  222 (272)
T 3rfs_A          211 WLHDNPWDCTCP  222 (272)
T ss_dssp             ECCSSCBCCCTT
T ss_pred             EccCCCccccCc
Confidence            788888877664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.36  E-value=3.8e-12  Score=99.10  Aligned_cols=91  Identities=22%  Similarity=0.170  Sum_probs=55.1

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            3455666666666666333334566666666666666666444445666666666676666666544432 345666677


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+||+.|.|.
T Consensus       211 ~l~~N~~~c~c~  222 (270)
T 2o6q_A          211 QLQENPWDCTCN  222 (270)
T ss_dssp             ECCSSCBCCSSS
T ss_pred             EecCCCeeCCCc
Confidence            777777777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=108.78  Aligned_cols=92  Identities=20%  Similarity=0.117  Sum_probs=79.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+++|+.|+|++|.+++..|..|.++++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred             CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence            4677888899999998777888999999999999999999877888999999999999999999777665 567888899


Q ss_pred             cccCCcCCCCCCC
Q 045886           81 VYAGNLELCGLPL   93 (184)
Q Consensus        81 ~~~~N~~lc~~~~   93 (184)
                      ++.+||+.|+|.+
T Consensus       285 ~L~~Np~~CdC~l  297 (440)
T 3zyj_A          285 HLHHNPWNCNCDI  297 (440)
T ss_dssp             ECCSSCEECSSTT
T ss_pred             EcCCCCccCCCCc
Confidence            9999999998853

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.35  E-value=3.3e-12  Score=100.83  Aligned_cols=89  Identities=20%  Similarity=0.081  Sum_probs=42.8

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      ++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++..++.......+..+.+.
T Consensus       124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~  203 (290)
T 1p9a_G          124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (290)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence            34444444444444322233344444444444444444222223344444555555555554322222334456667788


Q ss_pred             CCcCCCCCC
Q 045886           84 GNLELCGLP   92 (184)
Q Consensus        84 ~N~~lc~~~   92 (184)
                      +||+.|.|.
T Consensus       204 ~Np~~C~c~  212 (290)
T 1p9a_G          204 GNPWLCNCE  212 (290)
T ss_dssp             SCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            999999774

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.34  E-value=1.5e-12  Score=108.39  Aligned_cols=92  Identities=24%  Similarity=0.135  Sum_probs=79.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+.+|+.|+|++|.+++..|..|.++++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus       216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred             ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence            4667888889999998777888999999999999999999888888999999999999999999777655 567888899


Q ss_pred             cccCCcCCCCCCC
Q 045886           81 VYAGNLELCGLPL   93 (184)
Q Consensus        81 ~~~~N~~lc~~~~   93 (184)
                      ++.+||+.|.|..
T Consensus       296 ~L~~Np~~CdC~~  308 (452)
T 3zyi_A          296 HLHHNPWNCDCDI  308 (452)
T ss_dssp             ECCSSCEECSTTT
T ss_pred             EccCCCcCCCCCc
Confidence            9999999998864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.32  E-value=3e-12  Score=106.14  Aligned_cols=91  Identities=27%  Similarity=0.212  Sum_probs=73.4

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|+.|+|++|.+++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++.++.. ..+.++..+
T Consensus       321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence            4677888888888887666777888888888888888888777788888888888888888888766554 567788888


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+|+..|.|+
T Consensus       401 ~l~~N~l~~~~~  412 (455)
T 3v47_A          401 WLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCBCCCTT
T ss_pred             EccCCCcccCCC
Confidence            899999999876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.30  E-value=7e-12  Score=95.09  Aligned_cols=86  Identities=19%  Similarity=0.084  Sum_probs=62.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|.. ..+.++..+
T Consensus        55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            4567777888888777655556777788888888888887666666777778888888888887776654 456667777


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|..
T Consensus       135 ~L~~N~l  141 (220)
T 2v70_A          135 SLYDNQI  141 (220)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCcC
Confidence            7777643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.30  E-value=3.6e-12  Score=109.34  Aligned_cols=92  Identities=22%  Similarity=0.164  Sum_probs=78.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccc-cCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQ-SFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~-~l~~~   80 (184)
                      .+++|+.|+|++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++..++....+. ++..+
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF  550 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEE
T ss_pred             cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEE
Confidence            56889999999999998888889999999999999999998888999999999999999999985444434554 58889


Q ss_pred             cccCCcCCCCCCC
Q 045886           81 VYAGNLELCGLPL   93 (184)
Q Consensus        81 ~~~~N~~lc~~~~   93 (184)
                      ++.+||+.|+|+.
T Consensus       551 ~l~~N~~~c~c~~  563 (606)
T 3vq2_A          551 NLTNNSVACICEH  563 (606)
T ss_dssp             ECCSCCCCCSSTT
T ss_pred             EccCCCcccCCcc
Confidence            9999999998865

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.28  E-value=1.2e-11  Score=93.86  Aligned_cols=83  Identities=23%  Similarity=0.144  Sum_probs=37.7

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +++|+.|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|+.|++++|++++..|.. ..+.++..++
T Consensus        55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence            344444555555554444444445555555555555554222222344445555555555554444332 2334444444


Q ss_pred             ccCC
Q 045886           82 YAGN   85 (184)
Q Consensus        82 ~~~N   85 (184)
                      +.+|
T Consensus       135 L~~N  138 (220)
T 2v9t_B          135 LYDN  138 (220)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            4444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.28  E-value=2.8e-12  Score=100.42  Aligned_cols=90  Identities=24%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +++|+.|+|++|++++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. ..+.++..++
T Consensus       152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence            455566666666665333334555666666666666666555666666666666666666666544432 4456666777


Q ss_pred             ccCCcCCCCCC
Q 045886           82 YAGNLELCGLP   92 (184)
Q Consensus        82 ~~~N~~lc~~~   92 (184)
                      +.+|++.|.|+
T Consensus       232 l~~N~~~c~~~  242 (285)
T 1ozn_A          232 LNDNPWVCDCR  242 (285)
T ss_dssp             CCSSCEECSGG
T ss_pred             ccCCCccCCCC
Confidence            77777777664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.28  E-value=7.3e-12  Score=98.89  Aligned_cols=89  Identities=25%  Similarity=0.211  Sum_probs=48.9

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-ccc-ccCCcc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQL-QSFNAS   80 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l-~~l~~~   80 (184)
                      +++|+.|+|++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|.. ..+ .++..+
T Consensus       174 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L  253 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  253 (306)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred             CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence            445555566655555444555555556666666666655444445555556666666666665555443 222 345555


Q ss_pred             cccCCcCCCCC
Q 045886           81 VYAGNLELCGL   91 (184)
Q Consensus        81 ~~~~N~~lc~~   91 (184)
                      ++.+|++.|.|
T Consensus       254 ~L~~N~~~~~c  264 (306)
T 2z66_A          254 NLTQNDFACTC  264 (306)
T ss_dssp             ECTTCCEECSG
T ss_pred             EccCCCeeccc
Confidence            56666655554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.24  E-value=2.4e-11  Score=90.41  Aligned_cols=84  Identities=26%  Similarity=0.263  Sum_probs=74.7

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~   82 (184)
                      ..|+.|+|++|+++ .+|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|.. ..+.++..+++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            46899999999999 88989999999999999999999777788999999999999999999888754 66788888999


Q ss_pred             cCCcCC
Q 045886           83 AGNLEL   88 (184)
Q Consensus        83 ~~N~~l   88 (184)
                      .+|...
T Consensus       110 ~~N~l~  115 (193)
T 2wfh_A          110 HGNDIS  115 (193)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            888654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.24  E-value=5.1e-12  Score=108.38  Aligned_cols=90  Identities=26%  Similarity=0.217  Sum_probs=79.3

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++.+|.. ..+..+..+
T Consensus       474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L  552 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI  552 (606)
T ss_dssp             GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred             cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence            46788999999999998788889999999999999999998888899999999 9999999999887765 567888999


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+||+.|.|+
T Consensus       553 ~l~~N~~~c~c~  564 (606)
T 3t6q_A          553 NLRQNPLDCTCS  564 (606)
T ss_dssp             ECTTCCEECSGG
T ss_pred             eCCCCCccccCC
Confidence            999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.24  E-value=4e-12  Score=101.19  Aligned_cols=83  Identities=40%  Similarity=0.613  Sum_probs=39.8

Q ss_pred             CcCCceeeecc-CCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            3 LVGLIAVNLSR-NNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         3 l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++.|++|+|++ |.+.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+.++..+
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            34455555552 5555455555555555555555555555444544555555555555555554444432 333444444


Q ss_pred             cccCC
Q 045886           81 VYAGN   85 (184)
Q Consensus        81 ~~~~N   85 (184)
                      ++.+|
T Consensus       155 ~L~~N  159 (313)
T 1ogq_A          155 TFDGN  159 (313)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            44443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.24  E-value=4.7e-12  Score=94.04  Aligned_cols=91  Identities=22%  Similarity=0.268  Sum_probs=72.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      +++.|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+.......+....
T Consensus        76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~  155 (192)
T 1w8a_A           76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS  155 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC
T ss_pred             CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcC
Confidence            57889999999999998888889999999999999999999889999999999999999999998766432111222223


Q ss_pred             ccCCcCCCCCC
Q 045886           82 YAGNLELCGLP   92 (184)
Q Consensus        82 ~~~N~~lc~~~   92 (184)
                      +.++...|+.|
T Consensus       156 ~~~~~~~C~~P  166 (192)
T 1w8a_A          156 LNGGAARCGAP  166 (192)
T ss_dssp             CSGGGCBBCSS
T ss_pred             CCCCCCCCCCC
Confidence            44555566543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.23  E-value=1.2e-11  Score=105.16  Aligned_cols=92  Identities=25%  Similarity=0.290  Sum_probs=70.3

Q ss_pred             CCcCCceeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCc
Q 045886            2 DLVGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~   79 (184)
                      ++++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.. ..+.++..
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            4567777777777776 567777778888888888888888766777888888888888888888776654 56677788


Q ss_pred             ccccCCcCCCCCCC
Q 045886           80 SVYAGNLELCGLPL   93 (184)
Q Consensus        80 ~~~~~N~~lc~~~~   93 (184)
                      +++.+|++.|.|+.
T Consensus       523 L~l~~N~~~~~~~~  536 (570)
T 2z63_A          523 IWLHTNPWDCSCPR  536 (570)
T ss_dssp             EECCSSCBCCCTTT
T ss_pred             EEecCCcccCCCcc
Confidence            88888888887653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.22  E-value=5.3e-11  Score=90.68  Aligned_cols=84  Identities=20%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~   82 (184)
                      ++|+.|+|++|++++..|..|..+++|+.|++++|+++...+..|..+++|+.|++++|++++..+.. ..+.++..+++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            45777788888777666777777777777788777777443455677777777777777777665543 45666666666


Q ss_pred             cCCcC
Q 045886           83 AGNLE   87 (184)
Q Consensus        83 ~~N~~   87 (184)
                      .+|..
T Consensus       120 s~N~l  124 (229)
T 3e6j_A          120 CCNKL  124 (229)
T ss_dssp             CSSCC
T ss_pred             cCCcc
Confidence            66654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.22  E-value=3.5e-11  Score=96.48  Aligned_cols=85  Identities=19%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +++|++|+|++|.++ .+|..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+.+|.. ..+.++..++
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            667777788777777 77777777777777777777777 46666777777777777777777777764 4566666677


Q ss_pred             ccCCcCCC
Q 045886           82 YAGNLELC   89 (184)
Q Consensus        82 ~~~N~~lc   89 (184)
                      +.+|....
T Consensus       260 L~~n~~~~  267 (328)
T 4fcg_A          260 LKDCSNLL  267 (328)
T ss_dssp             CTTCTTCC
T ss_pred             CCCCCchh
Confidence            76665433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.22  E-value=1.3e-11  Score=103.18  Aligned_cols=91  Identities=22%  Similarity=0.174  Sum_probs=79.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|+.|+|++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred             CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence            5678999999999999777777899999999999999999888889999999999999999999876654 567788999


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+|++.|.|.
T Consensus       326 ~l~~N~l~c~c~  337 (477)
T 2id5_A          326 ILDSNPLACDCR  337 (477)
T ss_dssp             ECCSSCEECSGG
T ss_pred             EccCCCccCccc
Confidence            999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.21  E-value=2.2e-11  Score=105.86  Aligned_cols=91  Identities=20%  Similarity=0.128  Sum_probs=75.0

Q ss_pred             CCcCCceeeeccCCCCCCCCc-ccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-c-ccccCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITP-KIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-T-QLQSFN   78 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~-~l~~l~   78 (184)
                      ++++|+.|+|++|+++ .+|. .|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..|.. . .+.++.
T Consensus       534 ~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  612 (680)
T 1ziw_A          534 GLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT  612 (680)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred             CCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence            4577888888888888 5665 5888999999999999999555556788899999999999999877654 2 578889


Q ss_pred             cccccCCcCCCCCCC
Q 045886           79 ASVYAGNLELCGLPL   93 (184)
Q Consensus        79 ~~~~~~N~~lc~~~~   93 (184)
                      .+++.+||+.|+|+.
T Consensus       613 ~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          613 ELDMRFNPFDCTCES  627 (680)
T ss_dssp             EEECTTCCCCBCCCC
T ss_pred             EEEccCCCcccCCcc
Confidence            999999999999864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.21  E-value=6.1e-11  Score=91.29  Aligned_cols=84  Identities=23%  Similarity=0.160  Sum_probs=48.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +++|++|+|++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+.. ..+.++..++
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            455666666666666555555666666666666666666444445556666666666666666554443 3455555555


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +.+|.
T Consensus       138 Ls~N~  142 (251)
T 3m19_A          138 LNTNQ  142 (251)
T ss_dssp             CCSSC
T ss_pred             CcCCc
Confidence            55553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.21  E-value=7.5e-11  Score=88.15  Aligned_cols=83  Identities=23%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~   82 (184)
                      +.|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+.. ..+.++..+++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34566666666666444444566666666666666666433344556666666666666666544432 34455555555


Q ss_pred             cCCc
Q 045886           83 AGNL   86 (184)
Q Consensus        83 ~~N~   86 (184)
                      .+|.
T Consensus       108 ~~N~  111 (208)
T 2o6s_A          108 NTNQ  111 (208)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            5553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.19  E-value=2.4e-11  Score=86.21  Aligned_cols=83  Identities=20%  Similarity=0.242  Sum_probs=65.9

Q ss_pred             CcCCceeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            3 LVGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|.. ..+.++..+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            466888888888888 78888888888888888888888854  66788888888888888888766655 346777888


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++++|..
T Consensus        94 ~ls~N~i  100 (149)
T 2je0_A           94 NLSGNKI  100 (149)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCcC
Confidence            8877753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.19  E-value=4.5e-11  Score=95.81  Aligned_cols=88  Identities=22%  Similarity=0.266  Sum_probs=77.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|+.|+|++|.++ .+|+.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.. ..+.++..+
T Consensus       204 ~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  282 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL  282 (328)
T ss_dssp             GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred             CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence            5778999999999999 57778999999999999999999999999999999999999999999999865 677888888


Q ss_pred             cccCCcCCCC
Q 045886           81 VYAGNLELCG   90 (184)
Q Consensus        81 ~~~~N~~lc~   90 (184)
                      ++.+|+....
T Consensus       283 ~L~~n~~~~~  292 (328)
T 4fcg_A          283 DLRGCVNLSR  292 (328)
T ss_dssp             ECTTCTTCCC
T ss_pred             eCCCCCchhh
Confidence            9988876554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.18  E-value=1.3e-10  Score=84.69  Aligned_cols=85  Identities=20%  Similarity=0.130  Sum_probs=72.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.++.. ..+.++..++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            357899999999999666666899999999999999999665566899999999999999999877764 5678888899


Q ss_pred             ccCCcC
Q 045886           82 YAGNLE   87 (184)
Q Consensus        82 ~~~N~~   87 (184)
                      +.+|..
T Consensus       107 l~~N~l  112 (177)
T 2o6r_A          107 LDTNQL  112 (177)
T ss_dssp             CCSSCC
T ss_pred             CcCCcc
Confidence            988854

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=3.8e-11  Score=86.82  Aligned_cols=80  Identities=25%  Similarity=0.306  Sum_probs=44.4

Q ss_pred             cCCceeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCcc-ccccCCccc
Q 045886            4 VGLIAVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGT-QLQSFNASV   81 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~-~l~~l~~~~   81 (184)
                      +.|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|... .+..+..++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44566666666665 55555555566666666666665532  445555566666666666655444432 245555555


Q ss_pred             ccCC
Q 045886           82 YAGN   85 (184)
Q Consensus        82 ~~~N   85 (184)
                      +.+|
T Consensus       102 Ls~N  105 (168)
T 2ell_A          102 LSGN  105 (168)
T ss_dssp             CBSS
T ss_pred             ccCC
Confidence            5554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=3.1e-11  Score=87.35  Aligned_cols=85  Identities=21%  Similarity=0.172  Sum_probs=70.3

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC--CCccccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI--PLGTQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~--p~~~~l~~l~~   79 (184)
                      .+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|++++|++++..  +....+..+..
T Consensus        47 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           47 EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred             hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence            467899999999999854  77889999999999999999778888888999999999999998754  33356777888


Q ss_pred             ccccCCcCC
Q 045886           80 SVYAGNLEL   88 (184)
Q Consensus        80 ~~~~~N~~l   88 (184)
                      +++.+|+..
T Consensus       125 L~l~~N~l~  133 (168)
T 2ell_A          125 LDLFNCEVT  133 (168)
T ss_dssp             EECCSSGGG
T ss_pred             EEeeCCcCc
Confidence            888888653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=5.6e-11  Score=102.12  Aligned_cols=81  Identities=22%  Similarity=0.268  Sum_probs=46.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC-CCc-cccccCCcc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI-PLG-TQLQSFNAS   80 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~-p~~-~~l~~l~~~   80 (184)
                      +++|+.|+|++|+|+ .+|..++.+++|+.|+|++|.|++ +| .++.+++|+.|++++|++++.+ |.. ..+.+|..+
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            445566666666666 555566666666666666666663 45 5556666666666666666553 332 445555555


Q ss_pred             cccCCc
Q 045886           81 VYAGNL   86 (184)
Q Consensus        81 ~~~~N~   86 (184)
                      ++.+|+
T Consensus       539 ~L~~N~  544 (567)
T 1dce_A          539 NLQGNS  544 (567)
T ss_dssp             ECTTSG
T ss_pred             EecCCc
Confidence            555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.16  E-value=1.5e-10  Score=90.15  Aligned_cols=86  Identities=21%  Similarity=0.149  Sum_probs=62.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|++|+|++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..+.. ..+.++..+
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            4677888888888888655566777888888888888888655566777888888888888887666654 456667777


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|..
T Consensus       163 ~l~~n~l  169 (272)
T 3rfs_A          163 DLSYNQL  169 (272)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCCc
Confidence            7776643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.16  E-value=4e-11  Score=89.16  Aligned_cols=83  Identities=25%  Similarity=0.338  Sum_probs=42.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.+|....+.++..+++
T Consensus        87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l  166 (197)
T 4ezg_A           87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI  166 (197)
T ss_dssp             CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEEC
T ss_pred             CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEEC
Confidence            44555555555555544455555555555555555555544455555555555555555552223333344444555555


Q ss_pred             cCC
Q 045886           83 AGN   85 (184)
Q Consensus        83 ~~N   85 (184)
                      .+|
T Consensus       167 ~~n  169 (197)
T 4ezg_A          167 QFD  169 (197)
T ss_dssp             TTB
T ss_pred             CCC
Confidence            444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.15  E-value=6e-11  Score=101.44  Aligned_cols=84  Identities=23%  Similarity=0.158  Sum_probs=40.5

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +++|++|||++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|++++|++++..+.. ..+.+++.++
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  154 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence            444555555555555333334555555555555555555333334455555555555555555443332 3344444444


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +.+|.
T Consensus       155 Ls~N~  159 (635)
T 4g8a_A          155 VAHNL  159 (635)
T ss_dssp             CCSSC
T ss_pred             cccCc
Confidence            44443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.14  E-value=7.5e-11  Score=100.61  Aligned_cols=64  Identities=25%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             CCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCcccccCCcCCCCCC
Q 045886           28 TSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASVYAGNLELCGLP   92 (184)
Q Consensus        28 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~~~~N~~lc~~~   92 (184)
                      ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+. ...+..+..+++.+|++.|.|+
T Consensus       450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            56777777777777 7777777888999999999999854444 3567788888899999999774

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.14  E-value=2.2e-10  Score=90.28  Aligned_cols=85  Identities=26%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..+.. ..+.++..+
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            4566777777777777 66766777777777777777777555566777777777777777777655543 345566666


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|..
T Consensus       154 ~L~~N~l  160 (290)
T 1p9a_G          154 SLANNNL  160 (290)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCcC
Confidence            6666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.12  E-value=9.7e-11  Score=83.02  Aligned_cols=84  Identities=20%  Similarity=0.141  Sum_probs=72.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC--CCccccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI--PLGTQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~--p~~~~l~~l~~   79 (184)
                      .+++|+.|++++|.+++.  ..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++..  +....+..+..
T Consensus        40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            578899999999999955  77999999999999999999879998888999999999999998743  33466778888


Q ss_pred             ccccCCcC
Q 045886           80 SVYAGNLE   87 (184)
Q Consensus        80 ~~~~~N~~   87 (184)
                      +++.+|+.
T Consensus       118 L~l~~N~l  125 (149)
T 2je0_A          118 LDLFNCEV  125 (149)
T ss_dssp             EECTTCGG
T ss_pred             EeCcCCcc
Confidence            88888853

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.11  E-value=8.8e-11  Score=103.55  Aligned_cols=83  Identities=25%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      ++.|++|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..++.+++|++|+|++|.++..++....+.+|..+++
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGV  323 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEEC
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeC
Confidence            456666666666666 66666666666666666666666 6666666666666666666666533222345556666666


Q ss_pred             cCCcC
Q 045886           83 AGNLE   87 (184)
Q Consensus        83 ~~N~~   87 (184)
                      .+|+.
T Consensus       324 ~~N~l  328 (727)
T 4b8c_D          324 EGNPL  328 (727)
T ss_dssp             TTSCC
T ss_pred             CCCcc
Confidence            66654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=1.9e-10  Score=83.79  Aligned_cols=69  Identities=23%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL   70 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~   70 (184)
                      ++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|+.|++++|.+....+.
T Consensus        52 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           52 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             CcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            578999999999999966666689999999999999999966666799999999999999999877654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.11  E-value=1.4e-10  Score=97.72  Aligned_cols=85  Identities=27%  Similarity=0.302  Sum_probs=55.4

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCccccc
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASVYA   83 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~~~   83 (184)
                      +|+.|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+. ...+.++..+++.
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence            344444444444433333332  56777777777777 6777777888888888888888854433 3456777788888


Q ss_pred             CCcCCCCCC
Q 045886           84 GNLELCGLP   92 (184)
Q Consensus        84 ~N~~lc~~~   92 (184)
                      +|++.|.|+
T Consensus       477 ~N~~~c~c~  485 (520)
T 2z7x_B          477 TNPWDCSCP  485 (520)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCCcccCC
Confidence            888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.11  E-value=1.1e-10  Score=94.58  Aligned_cols=85  Identities=24%  Similarity=0.159  Sum_probs=44.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++.+|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|++++|++++..|.. ..+..|..+
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            3455555555555555444444555555555555555555433344555555555555555555444432 344455555


Q ss_pred             cccCCc
Q 045886           81 VYAGNL   86 (184)
Q Consensus        81 ~~~~N~   86 (184)
                      ++++|.
T Consensus       142 ~L~~N~  147 (361)
T 2xot_A          142 YLSQNQ  147 (361)
T ss_dssp             ECCSSC
T ss_pred             ECCCCc
Confidence            555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.09  E-value=1.5e-10  Score=93.81  Aligned_cols=65  Identities=25%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      ++++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++
T Consensus        86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            34556666666666664444445666666666666666664445555555666666666665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.09  E-value=1.1e-10  Score=92.72  Aligned_cols=85  Identities=21%  Similarity=0.283  Sum_probs=71.8

Q ss_pred             CCcCCceeeeccCCCCCCCCccc--CCCCCCCEeeccCCcCCCCCcccccCC-----CCCCeeeccCCCCCCCCCCc-cc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKI--GELTSLDFLDLSRNLFSGSIPSSLSQL-----SGLGVLDLSYNNSSGKIPLG-TQ   73 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~ls~N~l~g~~P~~~~~l-----~~L~~l~ls~N~l~g~~p~~-~~   73 (184)
                      ++++|++|+|++|.+++.+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|.. ..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            47789999999999998899886  8899999999999999966 8877777     89999999999998877654 56


Q ss_pred             cccCCcccccCCcC
Q 045886           74 LQSFNASVYAGNLE   87 (184)
Q Consensus        74 l~~l~~~~~~~N~~   87 (184)
                      +.++..+++++|..
T Consensus       172 l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          172 FPALSTLDLSDNPE  185 (312)
T ss_dssp             CSSCCEEECCSCTT
T ss_pred             CCCCCEEECCCCCc
Confidence            77888888888763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.09  E-value=2.5e-10  Score=99.13  Aligned_cols=83  Identities=27%  Similarity=0.222  Sum_probs=65.1

Q ss_pred             CcCCceeeeccCCCCCCCCcccC--CCCCCCEeeccCCcCCCCCcccccCCCCCCeeec------cCCCCCCCCCCc-cc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIG--ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDL------SYNNSSGKIPLG-TQ   73 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~l------s~N~l~g~~p~~-~~   73 (184)
                      +++|+.|+|++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++      ++|++.+.+|.. ..
T Consensus       487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence            447888888888888 7887776  88888888888888885 7888888888888888      457777777765 56


Q ss_pred             cccCCcccccCCcC
Q 045886           74 LQSFNASVYAGNLE   87 (184)
Q Consensus        74 l~~l~~~~~~~N~~   87 (184)
                      +.++..+++.+|..
T Consensus       565 l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          565 CPSLTQLQIGSNDI  578 (636)
T ss_dssp             CSSCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcC
Confidence            77777778877765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.09  E-value=5.2e-10  Score=86.95  Aligned_cols=86  Identities=23%  Similarity=0.217  Sum_probs=63.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..+.. ..+.++..+
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            4677888888888888555556778888888888888888666666778888888888888887665543 456667777


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|..
T Consensus       163 ~L~~n~l  169 (270)
T 2o6q_A          163 RLYNNQL  169 (270)
T ss_dssp             ECCSSCC
T ss_pred             EecCCcC
Confidence            7766643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.08  E-value=2.8e-10  Score=96.34  Aligned_cols=65  Identities=26%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccCCcCCCCCC
Q 045886           26 ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAGNLELCGLP   92 (184)
Q Consensus        26 ~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~N~~lc~~~   92 (184)
                      .+++|+.|++++|+++ .+|. ...+++|+.|++++|++++.+|.. ..+.++..+++++|++.|.|+
T Consensus       449 ~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          449 FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            5667777777777777 6776 466788888888888888877764 567788888899999888775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.07  E-value=1.8e-10  Score=95.40  Aligned_cols=84  Identities=25%  Similarity=0.243  Sum_probs=46.5

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +++|+.|+|++|++++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|.. ..+.++..++
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence            445555555555555444555555555556666665555444555555556666666666555554433 3445555555


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +.+|.
T Consensus       378 L~~N~  382 (455)
T 3v47_A          378 LDTNQ  382 (455)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            55554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.07  E-value=3.3e-10  Score=89.78  Aligned_cols=81  Identities=20%  Similarity=0.242  Sum_probs=41.3

Q ss_pred             CcCCceeeeccCCCCCCCCcc----cCCCCCCCEeeccCCcCCCCCcccccCC---CCCCeeeccCCCCCCCCCCccccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPK----IGELTSLDFLDLSRNLFSGSIPSSLSQL---SGLGVLDLSYNNSSGKIPLGTQLQ   75 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~----~~~l~~L~~L~ls~N~l~g~~P~~~~~l---~~L~~l~ls~N~l~g~~p~~~~l~   75 (184)
                      +++|++|+|++|+++ .+|..    +..+++|++|++++|++++..|..+..+   ++|++|++++|+++ .+|... ..
T Consensus       196 l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-~~  272 (310)
T 4glp_A          196 FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL-PA  272 (310)
T ss_dssp             SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-CS
T ss_pred             CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-cC
Confidence            455555666666554 33321    3445555666666666655545554444   35556666666555 333321 14


Q ss_pred             cCCcccccCCc
Q 045886           76 SFNASVYAGNL   86 (184)
Q Consensus        76 ~l~~~~~~~N~   86 (184)
                      ++..+++++|.
T Consensus       273 ~L~~L~Ls~N~  283 (310)
T 4glp_A          273 KLRVLDLSSNR  283 (310)
T ss_dssp             CCSCEECCSCC
T ss_pred             CCCEEECCCCc
Confidence            45555555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.07  E-value=5.4e-11  Score=103.25  Aligned_cols=69  Identities=16%  Similarity=0.234  Sum_probs=46.4

Q ss_pred             CCcCCceeeeccCCCCCC-----------------CCcccC--CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886            2 DLVGLIAVNLSRNNLTGP-----------------ITPKIG--ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~-----------------~p~~~~--~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      ++++|++|+|++|+++|.                 +|..++  ++++|++|++++|.+.|.+|..++.+++|++|++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            456667777777777754                 666666  6777777777777776677766666777777777776


Q ss_pred             C-CCC-CCCC
Q 045886           63 N-SSG-KIPL   70 (184)
Q Consensus        63 ~-l~g-~~p~   70 (184)
                      + ++| .+|.
T Consensus       284 ~~l~~~~lp~  293 (636)
T 4eco_A          284 RGISGEQLKD  293 (636)
T ss_dssp             TTSCHHHHHH
T ss_pred             CCCccccchH
Confidence            6 665 4443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=2.4e-10  Score=84.88  Aligned_cols=83  Identities=20%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCc-CCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNL-FSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~   80 (184)
                      .+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++. +....+.++..+
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L  186 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQL  186 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEE
T ss_pred             CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEE
Confidence            57899999999999998888899999999999999998 55 777 689999999999999999874 455677888889


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|+.
T Consensus       187 ~l~~N~i  193 (197)
T 4ezg_A          187 YAFSQTI  193 (197)
T ss_dssp             EECBC--
T ss_pred             EeeCccc
Confidence            9988863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.05  E-value=5.8e-10  Score=87.13  Aligned_cols=85  Identities=24%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             CCcCCceeeeccCC-CCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCc
Q 045886            2 DLVGLIAVNLSRNN-LTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~   79 (184)
                      ++++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+.. ..+.++..
T Consensus        78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  157 (285)
T 1ozn_A           78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (285)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence            45677777777776 66444666777777777777777777666667777777777777777777655543 45566666


Q ss_pred             ccccCCc
Q 045886           80 SVYAGNL   86 (184)
Q Consensus        80 ~~~~~N~   86 (184)
                      +++.+|.
T Consensus       158 L~l~~n~  164 (285)
T 1ozn_A          158 LFLHGNR  164 (285)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            6666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=4.8e-10  Score=82.02  Aligned_cols=69  Identities=26%  Similarity=0.223  Sum_probs=59.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL   70 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~   70 (184)
                      +++.|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|.+....+.
T Consensus        55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            578999999999999965555578999999999999999955555699999999999999999866543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.05  E-value=4.3e-10  Score=96.35  Aligned_cols=85  Identities=22%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      +++.|++|+|++|.+++..|..|.++++|++|++++|.+++..|..|+.+++|++|++++|++++..|.. ..+.+++.+
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL  133 (606)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred             CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence            3455666666666666444555666666666666666666555555666666666666666665544332 344455555


Q ss_pred             cccCCc
Q 045886           81 VYAGNL   86 (184)
Q Consensus        81 ~~~~N~   86 (184)
                      ++.+|.
T Consensus       134 ~L~~n~  139 (606)
T 3vq2_A          134 NVAHNF  139 (606)
T ss_dssp             ECCSSC
T ss_pred             eCCCCc
Confidence            555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.05  E-value=1.9e-10  Score=83.95  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=41.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCC-CCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELT-SLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      +.+|+.|++++|+++ .+|. +..+. +|+.|++++|.+++ + ..+..+++|+.|++++|++++..|.. ..+.++..+
T Consensus        18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            445556666666665 3433 33332 56666666666553 2 34555556666666666655444333 344555555


Q ss_pred             cccCCc
Q 045886           81 VYAGNL   86 (184)
Q Consensus        81 ~~~~N~   86 (184)
                      ++++|.
T Consensus        94 ~L~~N~   99 (176)
T 1a9n_A           94 ILTNNS   99 (176)
T ss_dssp             ECCSCC
T ss_pred             ECCCCc
Confidence            555553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.04  E-value=2.9e-10  Score=90.24  Aligned_cols=82  Identities=21%  Similarity=0.215  Sum_probs=38.0

Q ss_pred             CcCCceeeeccCCCCC--CCCc-ccCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCCCCCCCccccccCC
Q 045886            3 LVGLIAVNLSRNNLTG--PITP-KIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFN   78 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g--~~p~-~~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~   78 (184)
                      +++|++|+|++|++++  .++. .+..+++|+.|++++|++++..| ..+..+++|+.|++++|+++ .+|.... .++.
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~  277 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLS  277 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEE
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCce
Confidence            4455555555555551  1111 12344555555555555554443 23344455555555555555 3333211 3444


Q ss_pred             cccccCCc
Q 045886           79 ASVYAGNL   86 (184)
Q Consensus        79 ~~~~~~N~   86 (184)
                      .+++++|.
T Consensus       278 ~L~Ls~N~  285 (312)
T 1wwl_A          278 VLDLSYNR  285 (312)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCC
Confidence            44444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.03  E-value=5.4e-10  Score=86.88  Aligned_cols=61  Identities=25%  Similarity=0.169  Sum_probs=23.5

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      .|++|+|++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++.
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  113 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  113 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence            3444444444443222223334444444444444443333333333333333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.02  E-value=9.6e-10  Score=94.62  Aligned_cols=85  Identities=16%  Similarity=0.037  Sum_probs=46.5

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      +++.|+.|+|++|.+++..|..|+++++|++|++++|.+++..+..|..+++|++|++++|.+++.+|.. ..+.++..+
T Consensus        97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B           97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence            3455566666666666544455566666666666666666322233455666666666666666555532 344455555


Q ss_pred             cccCCc
Q 045886           81 VYAGNL   86 (184)
Q Consensus        81 ~~~~N~   86 (184)
                      ++.+|.
T Consensus       177 ~L~~N~  182 (597)
T 3oja_B          177 QLSSNR  182 (597)
T ss_dssp             ECTTSC
T ss_pred             ECcCCC
Confidence            555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.01  E-value=8.2e-10  Score=88.01  Aligned_cols=85  Identities=21%  Similarity=0.087  Sum_probs=68.1

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++..+.....+.++..+++.
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence            57888999999998777788888999999999999998766678888889999999999888443334566778888888


Q ss_pred             CCcCC
Q 045886           84 GNLEL   88 (184)
Q Consensus        84 ~N~~l   88 (184)
                      +|+.-
T Consensus       272 ~N~i~  276 (330)
T 1xku_A          272 NNNIS  276 (330)
T ss_dssp             SSCCC
T ss_pred             CCcCC
Confidence            87643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.01  E-value=8.3e-10  Score=88.12  Aligned_cols=86  Identities=21%  Similarity=0.062  Sum_probs=68.2

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++..++....+.++..+++.
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence            47888899999988777778888889999999999998776678888889999999999888433334667778888888


Q ss_pred             CCcCCC
Q 045886           84 GNLELC   89 (184)
Q Consensus        84 ~N~~lc   89 (184)
                      +|+...
T Consensus       273 ~N~l~~  278 (332)
T 2ft3_A          273 TNNITK  278 (332)
T ss_dssp             SSCCCB
T ss_pred             CCCCCc
Confidence            876543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.01  E-value=1.9e-10  Score=83.94  Aligned_cols=84  Identities=18%  Similarity=0.001  Sum_probs=68.3

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC--CccccccCCccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP--LGTQLQSFNASV   81 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p--~~~~l~~l~~~~   81 (184)
                      ++|+.|+|++|.+++.  +.+..+++|+.|++++|.+++..|..+..+++|++|++++|+++...+  ....+.++..++
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence            3899999999999954  678999999999999999995433445899999999999999965333  235677888889


Q ss_pred             ccCCcCCC
Q 045886           82 YAGNLELC   89 (184)
Q Consensus        82 ~~~N~~lc   89 (184)
                      +.+|+...
T Consensus       120 l~~N~i~~  127 (176)
T 1a9n_A          120 ILRNPVTN  127 (176)
T ss_dssp             CCSSGGGG
T ss_pred             ecCCCCCC
Confidence            99998643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.00  E-value=1.1e-09  Score=85.08  Aligned_cols=85  Identities=18%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC-CCCc-cccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK-IPLG-TQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~-~p~~-~~l~~l~~   79 (184)
                      ++++|++|+|++|.+++..|..+.++++|+.|++++|.+++..+..+..+++|++|++++|++++. +|.. ..+.++..
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            356677777777777655555666666677777777666654444566666666666666666652 3432 34455555


Q ss_pred             ccccCCc
Q 045886           80 SVYAGNL   86 (184)
Q Consensus        80 ~~~~~N~   86 (184)
                      +++++|.
T Consensus       154 L~Ls~N~  160 (276)
T 2z62_A          154 LDLSSNK  160 (276)
T ss_dssp             EECCSSC
T ss_pred             EECCCCC
Confidence            5555553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.00  E-value=2.2e-10  Score=96.54  Aligned_cols=86  Identities=21%  Similarity=0.098  Sum_probs=58.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +++|+.|+|++|.+++. |. ...+++|+.|++++|.+++ +|+.+..+++|+.|++++|.+++.++....+..+..+++
T Consensus       168 l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred             CCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence            45566666666666533 22 2346777777777777774 455577788888888888888865444456677788888


Q ss_pred             cCCcCCCCC
Q 045886           83 AGNLELCGL   91 (184)
Q Consensus        83 ~~N~~lc~~   91 (184)
                      .+|+..|++
T Consensus       245 ~~N~l~c~~  253 (487)
T 3oja_A          245 RGNGFHCGT  253 (487)
T ss_dssp             TTCCBCHHH
T ss_pred             CCCCCcCcc
Confidence            888888754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.00  E-value=4.7e-10  Score=88.40  Aligned_cols=86  Identities=24%  Similarity=0.299  Sum_probs=56.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCC-CCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG-SIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~   79 (184)
                      ++++|++|++++|.+++..|..+..+++|+.|++++|.+++ .+|..+..+++|+.|++++|++++..|.. ..+.++..
T Consensus       124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            45667777777777776666667777777777777777764 35666677777777777777776665543 44555666


Q ss_pred             ccccCCcC
Q 045886           80 SVYAGNLE   87 (184)
Q Consensus        80 ~~~~~N~~   87 (184)
                      +++.+|..
T Consensus       204 L~L~~N~l  211 (306)
T 2z66_A          204 LNMSHNNF  211 (306)
T ss_dssp             EECTTSCC
T ss_pred             EECCCCcc
Confidence            66666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.99  E-value=6.1e-10  Score=94.27  Aligned_cols=85  Identities=24%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC-CC-CccccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK-IP-LGTQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~-~p-~~~~l~~l~~   79 (184)
                      ++++|++|+|++|++++..|..|..+++|++|++++|.+++..|..++.+++|++|++++|++++. .| ....+.++..
T Consensus        48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence            355566666666666655555566666666666666666655445566666666666666666542 22 2244445555


Q ss_pred             ccccCCc
Q 045886           80 SVYAGNL   86 (184)
Q Consensus        80 ~~~~~N~   86 (184)
                      +++.+|.
T Consensus       128 L~L~~n~  134 (549)
T 2z81_A          128 LRIGNVE  134 (549)
T ss_dssp             EEEEESS
T ss_pred             EECCCCc
Confidence            5555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.99  E-value=1.7e-09  Score=88.11  Aligned_cols=82  Identities=20%  Similarity=0.137  Sum_probs=40.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccc-ccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS-LSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~-~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      +++|++|+|++|.+++..|..++.+++|++|++++|.++ .+|.. |..+++|++|++++|++++..|.. ..+.++..+
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  170 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  170 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred             CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence            444555555555555444444555555555555555555 33332 345555555555555555444432 334444444


Q ss_pred             cccCC
Q 045886           81 VYAGN   85 (184)
Q Consensus        81 ~~~~N   85 (184)
                      ++.+|
T Consensus       171 ~l~~n  175 (390)
T 3o6n_A          171 QLSSN  175 (390)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            44444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.98  E-value=5.7e-10  Score=95.60  Aligned_cols=64  Identities=22%  Similarity=0.128  Sum_probs=29.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +++|++|+|++|++++..|..|.++++|++|++++|++++..|..++.+++|++|++++|++++
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred             CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence            3444444444444444444444444444444444444444444444444444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.98  E-value=8.8e-10  Score=91.97  Aligned_cols=67  Identities=22%  Similarity=0.158  Sum_probs=35.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP   69 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p   69 (184)
                      ++.|++|+|++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|++.+..|
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  121 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD  121 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence            4455555555555554445555555555555555555553222334555555555555555554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=1.8e-10  Score=103.39  Aligned_cols=65  Identities=20%  Similarity=0.216  Sum_probs=41.8

Q ss_pred             CCcCCceeeeccCCCCC-----------------CCCcccC--CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886            2 DLVGLIAVNLSRNNLTG-----------------PITPKIG--ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g-----------------~~p~~~~--~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      ++++|+.|+|++|+++|                 .+|..++  ++++|+.|+|++|.+.|.+|..+.++++|+.|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            45566666666666665                 2666655  6666666666666666666666666666666666666


Q ss_pred             C-CCC
Q 045886           63 N-SSG   66 (184)
Q Consensus        63 ~-l~g   66 (184)
                      + ++|
T Consensus       526 ~~lsg  530 (876)
T 4ecn_A          526 RGISA  530 (876)
T ss_dssp             TTSCH
T ss_pred             CCccc
Confidence            5 555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.97  E-value=8.8e-10  Score=88.68  Aligned_cols=84  Identities=27%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC--CccccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP--LGTQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p--~~~~l~~l~~   79 (184)
                      ++++|+.|+|++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+  ....+.++..
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence            35566666666666665555556666666666666666663333336666666666666666664333  1234555555


Q ss_pred             ccccCC
Q 045886           80 SVYAGN   85 (184)
Q Consensus        80 ~~~~~N   85 (184)
                      +++.+|
T Consensus       154 L~l~~n  159 (353)
T 2z80_A          154 LRVGNM  159 (353)
T ss_dssp             EEEEES
T ss_pred             EECCCC
Confidence            555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.97  E-value=9.6e-10  Score=94.43  Aligned_cols=79  Identities=24%  Similarity=0.312  Sum_probs=71.8

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccccC
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAG   84 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~~   84 (184)
                      .|+.|+|++|.+++ +|. ++.+++|+.|+|++|.|+ .+|..++.+++|+.|++++|++++ +|....+.+|..+++++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCC
Confidence            58899999999994 786 999999999999999999 899999999999999999999998 56667788899999988


Q ss_pred             CcC
Q 045886           85 NLE   87 (184)
Q Consensus        85 N~~   87 (184)
                      |..
T Consensus       518 N~l  520 (567)
T 1dce_A          518 NRL  520 (567)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.97  E-value=1e-09  Score=91.22  Aligned_cols=64  Identities=27%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|+++.
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            4445555555555554444445555555555555555553333334555555555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.97  E-value=1.2e-09  Score=94.02  Aligned_cols=87  Identities=15%  Similarity=-0.000  Sum_probs=76.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      +++.|+.|+|++|.+++..|..|+.+++|+.|++++|.+++..|..|+.+++|++|++++|.+++.++.. ..+.++..+
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            3678999999999999877789999999999999999999887888899999999999999999777665 677888888


Q ss_pred             cccCCcCC
Q 045886           81 VYAGNLEL   88 (184)
Q Consensus        81 ~~~~N~~l   88 (184)
                      ++.+|...
T Consensus       153 ~Ls~N~l~  160 (597)
T 3oja_B          153 SMSNNNLE  160 (597)
T ss_dssp             ECCSSCCC
T ss_pred             EeeCCcCC
Confidence            88888643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.97  E-value=9.9e-10  Score=98.11  Aligned_cols=85  Identities=21%  Similarity=0.128  Sum_probs=52.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccc--ccCCCCCCeeeccCCCCCCCCCC--ccccccC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSS--LSQLSGLGVLDLSYNNSSGKIPL--GTQLQSF   77 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~--~~~l~~L~~l~ls~N~l~g~~p~--~~~l~~l   77 (184)
                      ++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.+|..  +..+++|++||+++|.+++..|.  ...+.+|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            4556666666666666556666666666666666666666555544  66666666666666666655442  2445555


Q ss_pred             CcccccCCc
Q 045886           78 NASVYAGNL   86 (184)
Q Consensus        78 ~~~~~~~N~   86 (184)
                      ..+++.+|.
T Consensus       151 ~~L~Ls~N~  159 (844)
T 3j0a_A          151 KSIDFSSNQ  159 (844)
T ss_dssp             CEEEEESSC
T ss_pred             CEEECCCCc
Confidence            555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.96  E-value=1.2e-09  Score=96.39  Aligned_cols=83  Identities=27%  Similarity=0.282  Sum_probs=74.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+..|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+..+++|+.|+|++|+|+ .+|.. ..+.+|..+
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            4678999999999999 89988889999999999999999 99999999999999999999999 55654 678889999


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|..
T Consensus       299 ~L~~N~l  305 (727)
T 4b8c_D          299 YFFDNMV  305 (727)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCCC
Confidence            9988854

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.96  E-value=5.6e-10  Score=88.74  Aligned_cols=84  Identities=21%  Similarity=0.143  Sum_probs=41.4

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      ++|++|+|++|.+++ +|. ...+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+....+.++..+++.
T Consensus       169 ~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          169 DTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             TTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred             CcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEcc
Confidence            444455555555442 222 223555555555555555 33444555555555555555555432222344455555555


Q ss_pred             CCcCCCC
Q 045886           84 GNLELCG   90 (184)
Q Consensus        84 ~N~~lc~   90 (184)
                      +|+..|+
T Consensus       246 ~N~~~~~  252 (317)
T 3o53_A          246 GNGFHCG  252 (317)
T ss_dssp             TCCCBHH
T ss_pred             CCCccCc
Confidence            5555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=1.8e-09  Score=96.94  Aligned_cols=84  Identities=25%  Similarity=0.258  Sum_probs=72.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccC--CCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccC------CCCCCCCCCc-c
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIG--ELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY------NNSSGKIPLG-T   72 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~------N~l~g~~p~~-~   72 (184)
                      +|++|+.|+|++|+++ .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++++      |++.+.+|.. .
T Consensus       726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~  803 (876)
T 4ecn_A          726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT  803 (876)
T ss_dssp             TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred             ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence            3458999999999999 8898887  89999999999999996 898899999999999976      7788888865 6


Q ss_pred             ccccCCcccccCCcC
Q 045886           73 QLQSFNASVYAGNLE   87 (184)
Q Consensus        73 ~l~~l~~~~~~~N~~   87 (184)
                      .+.+|..+++.+|..
T Consensus       804 ~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          804 TCPSLIQLQIGSNDI  818 (876)
T ss_dssp             GCSSCCEEECCSSCC
T ss_pred             cCCCCCEEECCCCCC
Confidence            678888888888876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.96  E-value=1.7e-09  Score=86.32  Aligned_cols=64  Identities=27%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGK   67 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~   67 (184)
                      +++|+.|+|++|++++..|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.
T Consensus       216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence            344555555555555443444555555555555555555 4454455555555555555555433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.95  E-value=2e-09  Score=87.64  Aligned_cols=86  Identities=15%  Similarity=0.011  Sum_probs=74.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      +++.|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|+++...+.. ..+.++..+
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            3678999999999999766678999999999999999999877788999999999999999999666554 567888888


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|..
T Consensus       147 ~L~~n~l  153 (390)
T 3o6n_A          147 SMSNNNL  153 (390)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcc
Confidence            8888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.95  E-value=1.5e-09  Score=86.53  Aligned_cols=84  Identities=23%  Similarity=0.214  Sum_probs=63.4

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|+.|++++|.++ .+|..+.  ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+.. ..+.++..+
T Consensus       169 ~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  245 (330)
T 1xku_A          169 GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  245 (330)
T ss_dssp             GCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             CCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence            3677888888888888 5666554  77888888888888766778888888888888888888766643 556677777


Q ss_pred             cccCCcCC
Q 045886           81 VYAGNLEL   88 (184)
Q Consensus        81 ~~~~N~~l   88 (184)
                      ++.+|...
T Consensus       246 ~L~~N~l~  253 (330)
T 1xku_A          246 HLNNNKLV  253 (330)
T ss_dssp             ECCSSCCS
T ss_pred             ECCCCcCc
Confidence            77777544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.94  E-value=1.7e-09  Score=89.67  Aligned_cols=67  Identities=25%  Similarity=0.176  Sum_probs=38.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI   68 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~   68 (184)
                      ++++|+.|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++...
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~  152 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP  152 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC
T ss_pred             CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC
Confidence            3455666666666666444455666666666666666666333345566666666666666665433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.94  E-value=1e-09  Score=92.46  Aligned_cols=86  Identities=26%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCC--CCcccccCCCCCCeeeccCCCCCCCCCCc--cccccC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG--SIPSSLSQLSGLGVLDLSYNNSSGKIPLG--TQLQSF   77 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g--~~P~~~~~l~~L~~l~ls~N~l~g~~p~~--~~l~~l   77 (184)
                      .+++|++|++++|++++.+|..+..+++|+.|++++|++++  .+|..+..+++|++|++++|++++.+|..  ..+..+
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            46789999999999998899999999999999999999996  56677889999999999999999866643  445566


Q ss_pred             CcccccCCcC
Q 045886           78 NASVYAGNLE   87 (184)
Q Consensus        78 ~~~~~~~N~~   87 (184)
                      ..+++++|..
T Consensus       402 ~~L~Ls~N~l  411 (520)
T 2z7x_B          402 LSLNMSSNIL  411 (520)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECcCCCC
Confidence            6666666643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.93  E-value=1.4e-09  Score=92.70  Aligned_cols=81  Identities=25%  Similarity=0.158  Sum_probs=52.0

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      ++|+.|+|++|.+++..|..|.++++|++|++++|++++..|..|..+++|++||+++|+++ .+|.. .+.++..++++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECC
Confidence            45667777777777555556777777777777777777555666666777777777777666 33433 45555556555


Q ss_pred             CCc
Q 045886           84 GNL   86 (184)
Q Consensus        84 ~N~   86 (184)
                      +|.
T Consensus       130 ~N~  132 (562)
T 3a79_B          130 FND  132 (562)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.92  E-value=8.3e-10  Score=84.13  Aligned_cols=82  Identities=16%  Similarity=0.129  Sum_probs=41.7

Q ss_pred             CcCCceeeeccCC-CCCCCCcccCCCCCCCEeeccC-CcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCC--
Q 045886            3 LVGLIAVNLSRNN-LTGPITPKIGELTSLDFLDLSR-NLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFN--   78 (184)
Q Consensus         3 l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~--   78 (184)
                      +++|+.|++++|. +++..+..|.++++|++|++++ |.+++..+..|..+++|++|++++|++++ +|....+.++.  
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L  132 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIF  132 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSE
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccc
Confidence            4555555555554 5533333455555555555555 55553333455555555555555555554 33333333343  


Q ss_pred             -cccccCC
Q 045886           79 -ASVYAGN   85 (184)
Q Consensus        79 -~~~~~~N   85 (184)
                       .+++.+|
T Consensus       133 ~~L~l~~N  140 (239)
T 2xwt_C          133 FILEITDN  140 (239)
T ss_dssp             EEEEEESC
T ss_pred             cEEECCCC
Confidence             4445554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.90  E-value=3.9e-09  Score=91.64  Aligned_cols=63  Identities=19%  Similarity=0.177  Sum_probs=27.1

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +.|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  111 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK  111 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc
Confidence            344444444444444444444444444444444444442211234444444444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=2.2e-09  Score=86.08  Aligned_cols=80  Identities=13%  Similarity=0.016  Sum_probs=70.9

Q ss_pred             ceeeeccC-CCCCCCCcccCCCCCCCEeeccC-CcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccccc
Q 045886            7 IAVNLSRN-NLTGPITPKIGELTSLDFLDLSR-NLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYA   83 (184)
Q Consensus         7 ~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~   83 (184)
                      ..++++++ +|+ .+|. ++.+++|+.|+|++ |.|++..|..|..+++|+.|+|++|+|++.+|.. ..+.+|..++++
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35799998 899 6898 99999999999996 9999777788999999999999999999988876 678889999999


Q ss_pred             CCcCC
Q 045886           84 GNLEL   88 (184)
Q Consensus        84 ~N~~l   88 (184)
                      +|...
T Consensus        89 ~N~l~   93 (347)
T 2ifg_A           89 FNALE   93 (347)
T ss_dssp             SSCCS
T ss_pred             CCccc
Confidence            88643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.90  E-value=1.4e-09  Score=87.56  Aligned_cols=85  Identities=27%  Similarity=0.199  Sum_probs=73.4

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~~   82 (184)
                      +.|++|++++|++++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|++++..+. ...+.++..+++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            4789999999999965555899999999999999999977788899999999999999999976654 356788888888


Q ss_pred             cCCcCC
Q 045886           83 AGNLEL   88 (184)
Q Consensus        83 ~~N~~l   88 (184)
                      .+|...
T Consensus       132 ~~n~l~  137 (353)
T 2z80_A          132 LGNPYK  137 (353)
T ss_dssp             TTCCCS
T ss_pred             CCCCCc
Confidence            888654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.90  E-value=1.9e-09  Score=86.22  Aligned_cols=84  Identities=24%  Similarity=0.255  Sum_probs=60.3

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++..|.. ..+.++..+
T Consensus       241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            46778888888888874 3 357778888888888888874 43 4777788888888888877666543 456677777


Q ss_pred             cccCCcCCC
Q 045886           81 VYAGNLELC   89 (184)
Q Consensus        81 ~~~~N~~lc   89 (184)
                      ++.+|+...
T Consensus       317 ~L~~n~l~~  325 (347)
T 4fmz_A          317 FLSQNHITD  325 (347)
T ss_dssp             ECCSSSCCC
T ss_pred             EccCCcccc
Confidence            777776544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.88  E-value=3.2e-09  Score=90.02  Aligned_cols=83  Identities=22%  Similarity=0.132  Sum_probs=38.0

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC-ccccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL-GTQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~-~~~l~~l~~~~   81 (184)
                      +++|++|+|++|++++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..+. ...+.++..++
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  130 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence            44455555555555533334445555555555555555433334444444455555544444433321 13333444444


Q ss_pred             ccCC
Q 045886           82 YAGN   85 (184)
Q Consensus        82 ~~~N   85 (184)
                      +.+|
T Consensus       131 L~~n  134 (570)
T 2z63_A          131 VAHN  134 (570)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            4443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.87  E-value=1.2e-09  Score=92.02  Aligned_cols=65  Identities=23%  Similarity=0.177  Sum_probs=37.1

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccccc-CCCCCCeeeccCCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS-QLSGLGVLDLSYNNSSGK   67 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~-~l~~L~~l~ls~N~l~g~   67 (184)
                      +++|+.|+|++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            34556666666666655555566666666666666666655555554 445555555555554433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.87  E-value=3.3e-09  Score=83.98  Aligned_cols=83  Identities=17%  Similarity=0.121  Sum_probs=58.8

Q ss_pred             cCCceeeeccCCCCCCCCccc--CCCCCCCEeeccCCcCCCCCc----ccccCCCCCCeeeccCCCCCCCCCCc-ccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKI--GELTSLDFLDLSRNLFSGSIP----SSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQS   76 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~ls~N~l~g~~P----~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~   76 (184)
                      ++|++|++++|.+++..|..+  ..+++|+.|++++|.+++..|    ..+..+++|++|++++|++.+.+|.. ..+..
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            457788888888887777776  777778888888887776555    23445777777777777777666544 45666


Q ss_pred             CCcccccCCc
Q 045886           77 FNASVYAGNL   86 (184)
Q Consensus        77 l~~~~~~~N~   86 (184)
                      +..+++++|.
T Consensus       171 L~~L~Ls~N~  180 (310)
T 4glp_A          171 LTSLDLSDNP  180 (310)
T ss_dssp             CCEEECCSCT
T ss_pred             CCEEECCCCC
Confidence            7777777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.82  E-value=1.1e-08  Score=80.45  Aligned_cols=60  Identities=28%  Similarity=0.330  Sum_probs=27.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +++|+.|+|++|.+++ +| .+..+++|++|++++|++++ + +.+..+++|+.|++++|++++
T Consensus        89 l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A           89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD  148 (291)
T ss_dssp             CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc
Confidence            4445555555555542 22 24444455555555554442 2 234444444444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.80  E-value=1.4e-08  Score=78.86  Aligned_cols=60  Identities=27%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      ++.|+.|++++|.++ .+| .+..+++|+.|++++|++++ +|. +..+++|+.|++++|++++
T Consensus        40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~   99 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN   99 (263)
T ss_dssp             HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC
T ss_pred             cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC
Confidence            345556666666655 444 45555566666666666652 333 5555556666666555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.80  E-value=3.2e-09  Score=80.87  Aligned_cols=84  Identities=12%  Similarity=0.044  Sum_probs=70.6

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCc-CCCCCcccccCCCCCCeeeccC-CCCCCCCCCc-cccccCCcc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNL-FSGSIPSSLSQLSGLGVLDLSY-NNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~P~~~~~l~~L~~l~ls~-N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ..|+.|++++|++++..+..|.++++|+.|++++|+ +++..+..|..+++|++|++++ |++++..+.. ..+.++..+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            368999999999996666689999999999999997 8855556899999999999998 9999776654 567788888


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|..
T Consensus       111 ~l~~n~l  117 (239)
T 2xwt_C          111 GIFNTGL  117 (239)
T ss_dssp             EEEEECC
T ss_pred             eCCCCCC
Confidence            8888754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.80  E-value=1.6e-08  Score=80.17  Aligned_cols=60  Identities=32%  Similarity=0.457  Sum_probs=27.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +++|++|+|++|.+++ +| .+..+++|++|++++|.+++ +|. +..+++|+.|++++|++++
T Consensus        84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~  143 (308)
T 1h6u_A           84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN  143 (308)
T ss_dssp             CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc
Confidence            4445555555555542 22 34444555555555555442 222 4444444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.79  E-value=1.4e-08  Score=80.53  Aligned_cols=59  Identities=27%  Similarity=0.455  Sum_probs=25.9

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +++|+.|++++|++++ +|. +..+++|++|++++|.+++ +|. +..+++|+.|++++|+++
T Consensus       106 l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             CTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC
Confidence            3444555555555442 222 4444444444444444442 222 444444444444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.79  E-value=7.9e-09  Score=89.40  Aligned_cols=79  Identities=29%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      |++|+.|+|++|.+++.  +.+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++. |....+.+|..+++
T Consensus       130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL  204 (605)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEC
T ss_pred             CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEc
Confidence            34444555555555422  334455555555555555553332  45555555555555555542 33344455555555


Q ss_pred             cCCc
Q 045886           83 AGNL   86 (184)
Q Consensus        83 ~~N~   86 (184)
                      .+|+
T Consensus       205 ~~N~  208 (605)
T 1m9s_A          205 FSQE  208 (605)
T ss_dssp             CSEE
T ss_pred             cCCc
Confidence            5554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.78  E-value=1.3e-08  Score=78.94  Aligned_cols=81  Identities=25%  Similarity=0.369  Sum_probs=46.1

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcc--------------------cccCCCCCCeeeccCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPS--------------------SLSQLSGLGVLDLSYN   62 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~--------------------~~~~l~~L~~l~ls~N   62 (184)
                      +++|+.|+|++|++++ +|+ +..+++|+.|++++|++++ +|.                    .+..+++|+.|++++|
T Consensus        62 l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N  138 (263)
T 1xeu_A           62 FTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN  138 (263)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTS
T ss_pred             CCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEECCCC
Confidence            4566666666666663 333 6666666666666666653 332                    3555566666666666


Q ss_pred             CCCCCCCCccccccCCcccccCCcC
Q 045886           63 NSSGKIPLGTQLQSFNASVYAGNLE   87 (184)
Q Consensus        63 ~l~g~~p~~~~l~~l~~~~~~~N~~   87 (184)
                      ++++. |....+.++..+++.+|..
T Consensus       139 ~i~~~-~~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          139 KLKSI-VMLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             CCCBC-GGGGGCTTCCEEECTTSCC
T ss_pred             cCCCC-hHHccCCCCCEEECCCCcC
Confidence            66543 3334455555666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.78  E-value=1.3e-08  Score=80.00  Aligned_cols=80  Identities=28%  Similarity=0.304  Sum_probs=59.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      .+++|+.|+|++|++++ +++ +..+++|+.|++++|.+++ +|. +..+++|++|++++|++++. +....+..+..++
T Consensus        66 ~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLY  140 (291)
T ss_dssp             GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEE
T ss_pred             cCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEE
Confidence            46778888888888884 444 8888888888888888884 444 88888888888888888764 4445556666666


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +++|.
T Consensus       141 l~~n~  145 (291)
T 1h6t_A          141 LGNNK  145 (291)
T ss_dssp             CCSSC
T ss_pred             ccCCc
Confidence            66654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.75  E-value=2.2e-08  Score=86.55  Aligned_cols=80  Identities=29%  Similarity=0.359  Sum_probs=52.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      .+++|+.|+|++|.+++ + +.+..+++|+.|+|++|.+++ + ..+..+++|+.|++++|++++..| ...+.+|..++
T Consensus       107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~  181 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY  181 (605)
T ss_dssp             TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE
Confidence            35566666666666663 3 336666677777777777764 3 456777777777777777776665 55566677777


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +++|.
T Consensus       182 Ls~N~  186 (605)
T 1m9s_A          182 LSKNH  186 (605)
T ss_dssp             CCSSC
T ss_pred             CcCCC
Confidence            77764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.74  E-value=6.3e-09  Score=82.63  Aligned_cols=83  Identities=19%  Similarity=0.123  Sum_probs=48.6

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCccccc-CCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLS-QLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~-~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      +++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+++. |....+.++..++
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~  197 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLD  197 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEE
Confidence            44566666666666655555666667777777777777655555443 456666666666666544 2222344555555


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +++|.
T Consensus       198 Ls~N~  202 (317)
T 3o53_A          198 LSSNK  202 (317)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            55543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.70  E-value=1.8e-08  Score=84.05  Aligned_cols=79  Identities=24%  Similarity=0.185  Sum_probs=35.4

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      ++|+.|+|++|++++..|  +..+++|+.|++++|.+++.  +.+..+++|+.|++++|++++.+| ...+..+..+++.
T Consensus       309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~  383 (466)
T 1o6v_A          309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLN  383 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEecc
Confidence            334444444444443222  33444444444444444422  234445555555555555554444 3344444445555


Q ss_pred             CCcC
Q 045886           84 GNLE   87 (184)
Q Consensus        84 ~N~~   87 (184)
                      +|++
T Consensus       384 ~n~~  387 (466)
T 1o6v_A          384 DQAW  387 (466)
T ss_dssp             CEEE
T ss_pred             CCcc
Confidence            5543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.68  E-value=2.3e-10  Score=85.01  Aligned_cols=80  Identities=25%  Similarity=0.287  Sum_probs=47.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      ++.|++|+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +|....+..+..+++
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEEC
Confidence            4556666666666663 55 5666666666666666666 566655555666666666666665 233334455555555


Q ss_pred             cCCc
Q 045886           83 AGNL   86 (184)
Q Consensus        83 ~~N~   86 (184)
                      .+|.
T Consensus       123 ~~N~  126 (198)
T 1ds9_A          123 SNNK  126 (198)
T ss_dssp             SEEE
T ss_pred             CCCc
Confidence            5554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.67  E-value=6.9e-08  Score=77.07  Aligned_cols=80  Identities=29%  Similarity=0.344  Sum_probs=52.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      .+++|++|++++|+++ .+|. +..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ ...+..+..++
T Consensus        64 ~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~  138 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN  138 (347)
T ss_dssp             GCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred             hcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence            3566777777777777 4444 777777777777777777 344 46777777777777777765433 44455555566


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +.+|.
T Consensus       139 l~~n~  143 (347)
T 4fmz_A          139 LGANH  143 (347)
T ss_dssp             CTTCT
T ss_pred             CCCCC
Confidence            65553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.65  E-value=5.8e-08  Score=80.93  Aligned_cols=78  Identities=29%  Similarity=0.455  Sum_probs=36.4

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +++|+.|++++|.+++ +|+ +..+++|+.|++++|++++. +. +..+++|+.|++++|++++..| ...+..+..+++
T Consensus       264 l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l  338 (466)
T 1o6v_A          264 LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF  338 (466)
T ss_dssp             CTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence            3445555555555542 222 44555555555555555532 22 4455555555555555554443 223334444444


Q ss_pred             cCC
Q 045886           83 AGN   85 (184)
Q Consensus        83 ~~N   85 (184)
                      .+|
T Consensus       339 ~~n  341 (466)
T 1o6v_A          339 YNN  341 (466)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.64  E-value=7.9e-08  Score=82.61  Aligned_cols=56  Identities=20%  Similarity=0.245  Sum_probs=28.7

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +++|+.|+|++|+|++ +|. +..  +|+.|++++|.|++ +|.   .+++|+.|++++|++++
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence            3455555555555553 444 333  55555555555553 444   34455555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.63  E-value=1.6e-08  Score=79.00  Aligned_cols=67  Identities=24%  Similarity=0.302  Sum_probs=47.5

Q ss_pred             CCcCCceeeeccCCCCC--CCCcccCCCCCCCEeeccCCcCCCCCcccccCCC--CCCeeeccCCCCCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTG--PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLS--GLGVLDLSYNNSSGKIPL   70 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~--~L~~l~ls~N~l~g~~p~   70 (184)
                      +++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|++++|.+++.+|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            35678888888888886  4445566788888888888888843  2334444  788888888888776664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.62  E-value=7.1e-08  Score=80.59  Aligned_cols=62  Identities=27%  Similarity=0.247  Sum_probs=42.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP   69 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p   69 (184)
                      .++.|+.|++++|++++.   .++.+++|+.|++++|++++ +|  +..+++|+.|++++|++++..+
T Consensus       189 ~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          189 QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            456677777777777743   36677777777777777775 55  6667777777777777776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.60  E-value=6e-08  Score=83.34  Aligned_cols=76  Identities=21%  Similarity=0.172  Sum_probs=36.2

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCC-------CeeeccCCCCCCCCCCcccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGL-------GVLDLSYNNSSGKIPLGTQLQS   76 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L-------~~l~ls~N~l~g~~p~~~~l~~   76 (184)
                      ++|+.|+|++|.+++ +|. +.  ++|+.|++++|.|+ .+|. +..  +|       +.|++++|+++..++....+.+
T Consensus       160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~  231 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDP  231 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred             CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCC
Confidence            344555555555553 444 33  45555555555555 4444 332  44       5555555555532222234555


Q ss_pred             CCcccccCCcC
Q 045886           77 FNASVYAGNLE   87 (184)
Q Consensus        77 l~~~~~~~N~~   87 (184)
                      +..+++.+|+.
T Consensus       232 L~~L~L~~N~l  242 (571)
T 3cvr_A          232 TCTIILEDNPL  242 (571)
T ss_dssp             TEEEECCSSSC
T ss_pred             CCEEEeeCCcC
Confidence            55555666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.59  E-value=1.7e-07  Score=78.27  Aligned_cols=78  Identities=23%  Similarity=0.154  Sum_probs=58.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      .+++|+.|++++|++++ +|  ++.+++|+.|++++|.+++.   .+..+++|+.|++++|++++ +| ...+..+..++
T Consensus       168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~  239 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFD  239 (457)
T ss_dssp             TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEE
T ss_pred             cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEE
Confidence            45677888888888884 55  77788888888888888853   37788888999999999888 45 45566777777


Q ss_pred             ccCCcC
Q 045886           82 YAGNLE   87 (184)
Q Consensus        82 ~~~N~~   87 (184)
                      +.+|..
T Consensus       240 l~~N~l  245 (457)
T 3bz5_A          240 CSVNPL  245 (457)
T ss_dssp             CCSSCC
T ss_pred             eeCCcC
Confidence            777754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.54  E-value=2.3e-07  Score=77.40  Aligned_cols=75  Identities=19%  Similarity=0.223  Sum_probs=39.9

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      ++|++|++++|++++ +| +++++++|++|++++|++++ +|..+   .+|++|++++|++++ +|....+..+..+++.
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence            356666666666663 55 46666666666666666663 44432   345555555555554 3333334444444444


Q ss_pred             CC
Q 045886           84 GN   85 (184)
Q Consensus        84 ~N   85 (184)
                      +|
T Consensus       204 ~N  205 (454)
T 1jl5_A          204 NN  205 (454)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.51  E-value=3e-07  Score=79.78  Aligned_cols=76  Identities=29%  Similarity=0.276  Sum_probs=49.5

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVY   82 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~   82 (184)
                      ++|+.|+|++|+++ .+|   ..+++|+.|++++|.|+ .+|.   .+++|+.|++++|+++ .+|.. ..+.++..+++
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            45666666666666 355   34566777777777777 5665   4567777777777777 34433 55666777777


Q ss_pred             cCCcCC
Q 045886           83 AGNLEL   88 (184)
Q Consensus        83 ~~N~~l   88 (184)
                      .+|+..
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.49  E-value=8.6e-08  Score=77.11  Aligned_cols=65  Identities=20%  Similarity=0.133  Sum_probs=37.2

Q ss_pred             cCCceeeeccCCCCCCCCc-ccCCCCCCCEeeccCCcCCCCCcc-cccCCCCCCe-eeccCCCCCCCCC
Q 045886            4 VGLIAVNLSRNNLTGPITP-KIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGV-LDLSYNNSSGKIP   69 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~P~-~~~~l~~L~~-l~ls~N~l~g~~p   69 (184)
                      +++++|+|++|+|+ .+|+ .|.++++|++|+|++|++.+.+|. .|.+++++.. +.+++|+++...|
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            35677777777777 4443 467777777777777776544443 3444444443 3334455544433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.48  E-value=4.4e-09  Score=78.03  Aligned_cols=82  Identities=24%  Similarity=0.244  Sum_probs=69.2

Q ss_pred             CcCCceeeeccCCCCCCCCc------ccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccc
Q 045886            3 LVGLIAVNLSRNNLTGPITP------KIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQ   75 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~------~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~   75 (184)
                      ...++.++++.|.++|.+|.      .+..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++. +|.. ..+.
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCC
Confidence            45678889999999988887      89999999999999999995 78 89999999999999999984 5544 4457


Q ss_pred             cCCcccccCCcC
Q 045886           76 SFNASVYAGNLE   87 (184)
Q Consensus        76 ~l~~~~~~~N~~   87 (184)
                      .+..+++.+|..
T Consensus        94 ~L~~L~L~~N~l  105 (198)
T 1ds9_A           94 TLEELWISYNQI  105 (198)
T ss_dssp             HCSEEEEEEEEC
T ss_pred             cCCEEECcCCcC
Confidence            788888887753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.45  E-value=9.8e-09  Score=83.50  Aligned_cols=87  Identities=21%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             CcCCceeeeccCCCC----CCCCcccCCCCCCCEeeccCCcCCCC----CcccccC--CCCCCeeeccCCCCCC----CC
Q 045886            3 LVGLIAVNLSRNNLT----GPITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQ--LSGLGVLDLSYNNSSG----KI   68 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~--l~~L~~l~ls~N~l~g----~~   68 (184)
                      +++|+.|+|++|.++    +.+|..+..+++|+.|++++|.+++.    +|..+..  +++|+.|++++|.+++    .+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            456666677666664    45666666666677777777766644    3444432  6667777777777665    24


Q ss_pred             CCc--cccccCCcccccCCcCCC
Q 045886           69 PLG--TQLQSFNASVYAGNLELC   89 (184)
Q Consensus        69 p~~--~~l~~l~~~~~~~N~~lc   89 (184)
                      |..  ..+.++..+++.+|+...
T Consensus       295 ~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHhcCCCceEEEccCCcCCc
Confidence            432  234666666777766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.41  E-value=1.4e-08  Score=80.77  Aligned_cols=39  Identities=28%  Similarity=0.259  Sum_probs=14.4

Q ss_pred             cCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886           24 IGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus        24 ~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      +..+++|++|++++|.+++..|..++.+++|++|++++|
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            333333333333333333333333333333333333333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.41  E-value=2.9e-07  Score=74.00  Aligned_cols=69  Identities=17%  Similarity=0.112  Sum_probs=58.6

Q ss_pred             CCcCCceeeeccCCCCCCCCc-ccCCCCCCCE-eeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITP-KIGELTSLDF-LDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPL   70 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~-L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~   70 (184)
                      ++++|++|+|++|++.+.+|. .|.+++++.. +.+++|+++...|..|..+++|++|++++|++.+..+.
T Consensus        52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X           52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred             CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence            578999999999999877775 4789998775 67788999976678899999999999999999876553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.39  E-value=6.1e-08  Score=78.27  Aligned_cols=65  Identities=31%  Similarity=0.270  Sum_probs=37.4

Q ss_pred             CCceeeeccCCCCCCCC----cccCCCC-CCCEeeccCCcCCCCCcccccCC-----CCCCeeeccCCCCCCCCC
Q 045886            5 GLIAVNLSRNNLTGPIT----PKIGELT-SLDFLDLSRNLFSGSIPSSLSQL-----SGLGVLDLSYNNSSGKIP   69 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p----~~~~~l~-~L~~L~ls~N~l~g~~P~~~~~l-----~~L~~l~ls~N~l~g~~p   69 (184)
                      +|++|||++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|++++..+
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            46666666666664443    4455555 56666666666665555555543     566666666666654443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.38  E-value=2.2e-08  Score=79.59  Aligned_cols=84  Identities=24%  Similarity=0.293  Sum_probs=58.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCC-cCCCC-CcccccCCCCCCeeeccCC-CCCCC-CCCc-cccc-
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRN-LFSGS-IPSSLSQLSGLGVLDLSYN-NSSGK-IPLG-TQLQ-   75 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N-~l~g~-~P~~~~~l~~L~~l~ls~N-~l~g~-~p~~-~~l~-   75 (184)
                      .+++|++|+|++|.+++..|..++.+++|++|++++| .+++. +|..+..+++|++|++++| .+++. ++.. ..+. 
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            4677888888888888777777888888888888888 57642 5666777888888888888 77642 2221 3344 


Q ss_pred             cCCcccccCC
Q 045886           76 SFNASVYAGN   85 (184)
Q Consensus        76 ~l~~~~~~~N   85 (184)
                      ++..+++.+|
T Consensus       196 ~L~~L~l~~~  205 (336)
T 2ast_B          196 TITQLNLSGY  205 (336)
T ss_dssp             TCCEEECCSC
T ss_pred             CCCEEEeCCC
Confidence            5555555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.37  E-value=2.9e-07  Score=79.84  Aligned_cols=65  Identities=26%  Similarity=0.209  Sum_probs=58.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG   71 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~   71 (184)
                      .+++|+.|+|++|+|+ .+|.   .+++|+.|++++|.|+ .+|..+..+++|+.|++++|++++.+|..
T Consensus       239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            4678999999999999 6777   6789999999999999 89999999999999999999999877653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.34  E-value=1.4e-06  Score=72.72  Aligned_cols=18  Identities=22%  Similarity=0.071  Sum_probs=7.8

Q ss_pred             ccCCCCCCeeeccCCCCC
Q 045886           48 LSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus        48 ~~~l~~L~~l~ls~N~l~   65 (184)
                      +..+++|+.|++++|+++
T Consensus       233 ~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CTTCTTCCEEECCSSCCS
T ss_pred             cCCCCCCCEEECCCCcCC
Confidence            334444444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.32  E-value=6e-08  Score=78.82  Aligned_cols=61  Identities=25%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             cCCceeeeccCCCC-CCCC---cccCCCCCCCEeeccCCcCC--C---CCcccccCCCCCCeeeccCCCC
Q 045886            4 VGLIAVNLSRNNLT-GPIT---PKIGELTSLDFLDLSRNLFS--G---SIPSSLSQLSGLGVLDLSYNNS   64 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~-g~~p---~~~~~l~~L~~L~ls~N~l~--g---~~P~~~~~l~~L~~l~ls~N~l   64 (184)
                      ++|+.|+|++|+++ +.+|   ..+..+++|+.|++++|.++  |   ..|..+..+++|+.|++++|.+
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence            45566666666655 3333   23445555555666655555  1   2232455555555555555555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.26  E-value=1.1e-07  Score=76.87  Aligned_cols=82  Identities=26%  Similarity=0.295  Sum_probs=52.4

Q ss_pred             CCceeeeccCCCCCCCCcccCCC-----CCCCEeeccCCcCCCCCcccccC----C-CCCCeeeccCCCCCCCCCCc---
Q 045886            5 GLIAVNLSRNNLTGPITPKIGEL-----TSLDFLDLSRNLFSGSIPSSLSQ----L-SGLGVLDLSYNNSSGKIPLG---   71 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~L~ls~N~l~g~~P~~~~~----l-~~L~~l~ls~N~l~g~~p~~---   71 (184)
                      +|++|+|++|.+++..+..+..+     ++|++|++++|.+++..+..+..    + ++|+.|++++|++++..+..   
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            67788888888776666666554     77788888888877665554433    3 67777777777776554422   


Q ss_pred             --cc-cccCCcccccCCc
Q 045886           72 --TQ-LQSFNASVYAGNL   86 (184)
Q Consensus        72 --~~-l~~l~~~~~~~N~   86 (184)
                        .. ..++..+++++|.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A          132 AFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHTTSCTTCCEEECTTSC
T ss_pred             HHHhCCCceeEEEccCCc
Confidence              01 1355556665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=1.1e-07  Score=74.14  Aligned_cols=64  Identities=23%  Similarity=0.309  Sum_probs=51.3

Q ss_pred             CCCCCCCEeeccCCcCCC--CCcccccCCCCCCeeeccCCCCCCCCCCccccc--cCCcccccCCcCCCC
Q 045886           25 GELTSLDFLDLSRNLFSG--SIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQ--SFNASVYAGNLELCG   90 (184)
Q Consensus        25 ~~l~~L~~L~ls~N~l~g--~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~--~l~~~~~~~N~~lc~   90 (184)
                      .+++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++. .....+.  .|..+.+.+|| +|+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS-LCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST-TGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc-Ccc
Confidence            468899999999999997  4567778999999999999999976 2223344  77888899998 453

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.02  E-value=2.7e-07  Score=76.23  Aligned_cols=64  Identities=22%  Similarity=0.117  Sum_probs=33.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccC-----CCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIG-----ELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~-----~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +++|+.|+|++|.+++..+..+.     ..++|+.|++++|.+++.    +|..+..+++|+.|++++|.+++
T Consensus       283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            45566666666666533222222     124566666666666543    34444555666666666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.80  E-value=3.5e-05  Score=53.42  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=33.8

Q ss_pred             eeeeccCCCC-CCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCC
Q 045886            8 AVNLSRNNLT-GPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNS   64 (184)
Q Consensus         8 ~L~Ls~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l   64 (184)
                      .++-+++.++ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5677777775 35554322  3577777777777733334556667777766666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.73  E-value=2.7e-06  Score=70.13  Aligned_cols=85  Identities=19%  Similarity=0.062  Sum_probs=66.4

Q ss_pred             CcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCCCcccccC-----CCCCCeeeccCCCCCC----CCC
Q 045886            3 LVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGSIPSSLSQ-----LSGLGVLDLSYNNSSG----KIP   69 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~-----l~~L~~l~ls~N~l~g----~~p   69 (184)
                      .++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .++|+.|++++|++++    .+|
T Consensus       312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            36899999999999865    5666778899999999999998655554543     6799999999999985    444


Q ss_pred             Cc-cccccCCcccccCCcC
Q 045886           70 LG-TQLQSFNASVYAGNLE   87 (184)
Q Consensus        70 ~~-~~l~~l~~~~~~~N~~   87 (184)
                      .. ..++++..+++.+|+.
T Consensus       392 ~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHCCCCCEEECCSSSC
T ss_pred             HHHHhCCCccEEECCCCCC
Confidence            43 4567788888888864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.69  E-value=2.1e-06  Score=69.95  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=45.2

Q ss_pred             cCCceeeeccCCCCC----CCCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCCCCCCc----
Q 045886            4 VGLIAVNLSRNNLTG----PITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSGKIPLG----   71 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g~~p~~----   71 (184)
                      ..|+.|+|++|.++.    .++..+...++|++|+|++|.++..    ++..+...++|+.|++++|.++..-...    
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            456666666666652    1333334566677777777766531    2344555566777777777665321100    


Q ss_pred             -cccccCCcccccCCc
Q 045886           72 -TQLQSFNASVYAGNL   86 (184)
Q Consensus        72 -~~l~~l~~~~~~~N~   86 (184)
                       ....++..+++++|+
T Consensus       235 L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          235 AREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHCSSCCEEECTTSS
T ss_pred             HHhCCCCCEEeccCCC
Confidence             123456666666664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.63  E-value=0.00015  Score=50.21  Aligned_cols=61  Identities=21%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             CEeeccCCcCC-CCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccCCcCCCCCCC
Q 045886           31 DFLDLSRNLFS-GSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAGNLELCGLPL   93 (184)
Q Consensus        31 ~~L~ls~N~l~-g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~N~~lc~~~~   93 (184)
                      ..++.+++.|+ ..+|..+.  ++|+.|+|++|+|+...+.. ..+..+..+.+.+||+.|+|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            47889999997 46776433  47999999999999766654 5567888899999999998853

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.55  E-value=1.2e-05  Score=68.40  Aligned_cols=62  Identities=16%  Similarity=0.094  Sum_probs=25.7

Q ss_pred             cCCceeeeccCCCCC-CCCcccCCCCCCCEeeccCCcCCCC-CcccccCCCCCCeeeccCCCCC
Q 045886            4 VGLIAVNLSRNNLTG-PITPKIGELTSLDFLDLSRNLFSGS-IPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~-~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      ++|+.|+|++|++++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            344444444444442 1222233444444444444444322 2222233444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.49  E-value=1.6e-05  Score=64.74  Aligned_cols=65  Identities=15%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             CCcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      .+++|++|+|++|.++..    ++..+...++|+.|+|++|.++..    ++..+...++|+.||+++|.++.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            357899999999999732    345567788999999999999842    33445567899999999998863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.49  E-value=0.00012  Score=57.95  Aligned_cols=80  Identities=16%  Similarity=0.186  Sum_probs=59.8

Q ss_pred             CcCCceeeeccCCCCCCCCc-ccCCCCCCCEeeccCCcCCCCCcccccCCCCCC-eeeccCCCCCCCCCCc-cccccCCc
Q 045886            3 LVGLIAVNLSRNNLTGPITP-KIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLG-VLDLSYNNSSGKIPLG-TQLQSFNA   79 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~-~l~ls~N~l~g~~p~~-~~l~~l~~   79 (184)
                      +++|+.|+|++|+++ .+|. .|.++.+|+.+++++| ++..-+.+|..+.+|+ .+++.+ .++...+.. ..+.+|..
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            678999999999999 6665 5999999999999998 7744456799999999 999988 554333222 34455666


Q ss_pred             ccccCC
Q 045886           80 SVYAGN   85 (184)
Q Consensus        80 ~~~~~N   85 (184)
                      +.+.+|
T Consensus       302 l~l~~n  307 (329)
T 3sb4_A          302 VLATGD  307 (329)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.38  E-value=8.9e-06  Score=69.16  Aligned_cols=65  Identities=9%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             CCcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCC----CCcccccCCCCCCeeeccCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSG----SIPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g----~~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      ++++|++|+|++|.+++.    ++..+..+++|++|++++|.+++    .++..+..+++|+.|++++|.+.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            356777888888877644    33334567777888888877762    233445567778888888777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.32  E-value=9.6e-06  Score=68.91  Aligned_cols=60  Identities=13%  Similarity=0.056  Sum_probs=30.5

Q ss_pred             CCCCCEeeccCCcCCCCCcccc-cCCCCCCeeeccCCCCCCCCCC--ccccccCCcccccCCc
Q 045886           27 LTSLDFLDLSRNLFSGSIPSSL-SQLSGLGVLDLSYNNSSGKIPL--GTQLQSFNASVYAGNL   86 (184)
Q Consensus        27 l~~L~~L~ls~N~l~g~~P~~~-~~l~~L~~l~ls~N~l~g~~p~--~~~l~~l~~~~~~~N~   86 (184)
                      +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+.  ...+.++..+++.+|+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            5556666666666554333333 4456666666666665322211  1234455555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.00043  Score=54.77  Aligned_cols=66  Identities=12%  Similarity=0.000  Sum_probs=54.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCC-EeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLD-FLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP   69 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p   69 (184)
                      +|.+|+.|+|++| ++..-+..|.++.+|+ .+++++ .++..-+.+|..+++|+.+++++|++....+
T Consensus       248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            5789999999998 7733445599999999 999999 7774455789999999999999998875444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.12  E-value=9.6e-05  Score=54.04  Aligned_cols=85  Identities=16%  Similarity=0.054  Sum_probs=58.1

Q ss_pred             CCcCCceeeeccC-CCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCCCC----
Q 045886            2 DLVGLIAVNLSRN-NLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSGKI----   68 (184)
Q Consensus         2 ~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g~~----   68 (184)
                      ..+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|++++|.+...-    
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4578999999999 88632    344466678899999999998732    3344556688999999999886421    


Q ss_pred             C-CccccccCCcccc--cCCc
Q 045886           69 P-LGTQLQSFNASVY--AGNL   86 (184)
Q Consensus        69 p-~~~~l~~l~~~~~--~~N~   86 (184)
                      . ......++..+++  .+|.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSC
T ss_pred             HHHHHhCCCceEEEecCCCCC
Confidence            1 1123345677777  5554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.03  E-value=5.7e-05  Score=64.11  Aligned_cols=64  Identities=22%  Similarity=0.200  Sum_probs=35.4

Q ss_pred             CcCCceeeeccCCCCCCCCcccC-CCCCCCEeeccCC-cCCCC-CcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIG-ELTSLDFLDLSRN-LFSGS-IPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~ls~N-~l~g~-~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +++|+.|+|++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            44566666666666655444443 4566666666666 33321 33333356666666666666544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.02  E-value=4.9e-05  Score=61.66  Aligned_cols=85  Identities=14%  Similarity=0.125  Sum_probs=55.7

Q ss_pred             CCcCCceeeecc--CCCCCC-----CCccc--CCCCCCCEeeccCCcCCCCCccccc---CCCCCCeeeccCCCCCCC--
Q 045886            2 DLVGLIAVNLSR--NNLTGP-----ITPKI--GELTSLDFLDLSRNLFSGSIPSSLS---QLSGLGVLDLSYNNSSGK--   67 (184)
Q Consensus         2 ~l~~L~~L~Ls~--N~l~g~-----~p~~~--~~l~~L~~L~ls~N~l~g~~P~~~~---~l~~L~~l~ls~N~l~g~--   67 (184)
                      .+++|+.|+|+.  |...|.     +...+  ..+++|++|+|++|.+....+..+.   .+++|+.|+++.|.+...  
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            578899999863  222222     11122  3578999999999988754444443   478899999999988753  


Q ss_pred             --CCCc-cccccCCcccccCCc
Q 045886           68 --IPLG-TQLQSFNASVYAGNL   86 (184)
Q Consensus        68 --~p~~-~~l~~l~~~~~~~N~   86 (184)
                        ++.. ..+.+|..+++..|.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHhhcccCCcceEEECCCCc
Confidence              2222 345677777776664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.88  E-value=0.00017  Score=52.70  Aligned_cols=84  Identities=13%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             CcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeec--cCCCCCCCCCCc-
Q 045886            3 LVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDL--SYNNSSGKIPLG-   71 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~l--s~N~l~g~~p~~-   71 (184)
                      .++|++|+|++|.+...    +...+...+.|++|+|++|.+...    +...+...++|++|++  ++|.+...-... 
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            46899999999999732    333455568899999999999843    4556777889999999  889886321110 


Q ss_pred             ----cccccCCcccccCCc
Q 045886           72 ----TQLQSFNASVYAGNL   86 (184)
Q Consensus        72 ----~~l~~l~~~~~~~N~   86 (184)
                          ...+++..+++.+|.
T Consensus       144 ~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCCCcCEEeccCCC
Confidence                223566777776653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.01  E-value=0.0013  Score=53.32  Aligned_cols=84  Identities=12%  Similarity=0.116  Sum_probs=53.0

Q ss_pred             CcCCceeeeccCCCCCCCCcccC--CCCCCCEeeccC--CcCCCC-----Ccccc--cCCCCCCeeeccCCCCCCCCCCc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIG--ELTSLDFLDLSR--NLFSGS-----IPSSL--SQLSGLGVLDLSYNNSSGKIPLG   71 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~ls~--N~l~g~-----~P~~~--~~l~~L~~l~ls~N~l~g~~p~~   71 (184)
                      +.+|+.|+|..+.+.......+.  .+++|++|+|+.  |...|.     +...+  ..+++|++|++++|.+....+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            56899999998887643333333  789999999864  332222     11122  24789999999999886432211


Q ss_pred             ----cccccCCcccccCCc
Q 045886           72 ----TQLQSFNASVYAGNL   86 (184)
Q Consensus        72 ----~~l~~l~~~~~~~N~   86 (184)
                          ..+..+..++++.|.
T Consensus       272 la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSC
T ss_pred             HHhCccCCCCCEEECCCCC
Confidence                235567777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.61  E-value=0.0028  Score=46.17  Aligned_cols=59  Identities=12%  Similarity=0.121  Sum_probs=35.8

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCc-CCCCCcccccCC----CCCCeeeccCCC
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNL-FSGSIPSSLSQL----SGLGVLDLSYNN   63 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~P~~~~~l----~~L~~l~ls~N~   63 (184)
                      .|+.||++++.++..--..+..+++|++|+|+++. ++..--..+..+    ++|++|+++++.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            36777888777663333445677778888887774 553222234443    357777777753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.14  E-value=0.037  Score=45.15  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=28.2

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCC-----CCCcccccCCCCCCeeecc
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFS-----GSIPSSLSQLSGLGVLDLS   60 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~-----g~~P~~~~~l~~L~~l~ls   60 (184)
                      +|+.+++ .|.++..-+..|.++++|+.+++.+|.+.     ..-+..|..+++|+.+++.
T Consensus       249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            4555555 34444222334556666666666665543     1222345556666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.13  E-value=0.0024  Score=46.49  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=45.2

Q ss_pred             CCcCCceeeeccCC-CCCCCCcccCCC----CCCCEeeccCCc-CCCCCcccccCCCCCCeeeccCCC
Q 045886            2 DLVGLIAVNLSRNN-LTGPITPKIGEL----TSLDFLDLSRNL-FSGSIPSSLSQLSGLGVLDLSYNN   63 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~L~ls~N~-l~g~~P~~~~~l~~L~~l~ls~N~   63 (184)
                      .+++|+.|+|+++. ++..--..+..+    ++|++|+++++. ++..--..+..+++|++|++++..
T Consensus        83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            67899999999985 663222334554    379999999975 774323457789999999998864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.89  E-value=0.065  Score=43.68  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      +|.+|+.++|+.|+++ .+|.......+|+.+.+..+ ++..-...|..+++|+.+++..|
T Consensus       178 ~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          178 YCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             TCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred             CcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence            3566666777666666 44444223456666666533 44223345666777777776653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.04  E-value=0.035  Score=41.01  Aligned_cols=62  Identities=16%  Similarity=0.206  Sum_probs=44.6

Q ss_pred             cCCceeeeccC-CCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCC
Q 045886            4 VGLIAVNLSRN-NLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         4 ~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +.|+.|+|++| ++...    +-..+..=..|+.|+|++|++...    +-..+..-+.|+.|+|+.|.+.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            57899999985 66521    223355567899999999999732    2233445678999999999986

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=92.09  E-value=0.17  Score=27.86  Aligned_cols=27  Identities=7%  Similarity=0.001  Sum_probs=12.5

Q ss_pred             eeehhhHHHHHHHHHHHHHHHhhcccc
Q 045886          127 FYVSSILGFFVGFWGVCGYLMLNRSWS  153 (184)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (184)
                      ++.+++.+++++++++++.++|.|+++
T Consensus        13 IA~gVVgGv~~~~ii~~~~~~~~RRr~   39 (44)
T 2ks1_B           13 IATGMVGALLLLLVVALGIGLFMRRRH   39 (44)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence            333444445554444444445555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.04  E-value=0.042  Score=40.59  Aligned_cols=60  Identities=12%  Similarity=0.149  Sum_probs=42.2

Q ss_pred             cCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCC
Q 045886            4 VGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNN   63 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~   63 (184)
                      +.|+.|+|++|++...    +-..+..=+.|++|+|++|.|...    +-..+..-+.|+.|++++|.
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence            5789999999999722    222233457899999999999832    12234445679999998753

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=91.10  E-value=0.17  Score=26.92  Aligned_cols=23  Identities=30%  Similarity=0.493  Sum_probs=13.9

Q ss_pred             ceeehhhHHHHHHHHHHHHHHHh
Q 045886          126 GFYVSSILGFFVGFWGVCGYLML  148 (184)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~  148 (184)
                      +.+.+++++.++++.++.++.+|
T Consensus        11 GaIAGiVvG~v~gv~li~~l~~~   33 (38)
T 2k1k_A           11 GEIVAVIFGLLLGAALLLGILVF   33 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeeeehHHHHHHHHHHHHHHH
Confidence            45677777777665555544443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=90.99  E-value=0.13  Score=28.25  Aligned_cols=26  Identities=12%  Similarity=0.101  Sum_probs=12.5

Q ss_pred             eeehhhHHHHHHHHHHHHHHHhhccc
Q 045886          127 FYVSSILGFFVGFWGVCGYLMLNRSW  152 (184)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (184)
                      .+++.++|+++.+++.+..++|.||+
T Consensus        13 ~Ia~~vVGvll~vi~~l~~~~~~RRR   38 (44)
T 2jwa_A           13 SIISAVVGILLVVVLGVVFGILIKRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhheehh
Confidence            45566666444444444444444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.24  E-value=0.34  Score=38.51  Aligned_cols=59  Identities=10%  Similarity=0.113  Sum_probs=43.0

Q ss_pred             CCcCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886            2 DLVGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      ++..|+.+++..+ +. .++ ..|.++.+|+.+.+.++.++..-...|.++.+|+.+++..+
T Consensus       261 ~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          261 NCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            3567788887543 55 444 45788899999999988887333467888899999988654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=89.90  E-value=0.28  Score=39.41  Aligned_cols=58  Identities=19%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             CCcCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886            2 DLVGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      .+.+|+.+.+..+ ++ .++ ..|.++.+|+.+++..+ ++-.-..+|.++.+|+.+++..|
T Consensus       295 ~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            4677888888654 66 444 45888899999999754 66233457888899999988765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.00  E-value=0.69  Score=37.05  Aligned_cols=80  Identities=16%  Similarity=0.297  Sum_probs=53.3

Q ss_pred             CCcCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc--cccccCC
Q 045886            2 DLVGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG--TQLQSFN   78 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~--~~l~~l~   78 (184)
                      ++..|+.+++. +.++ .++ ..|.++.+|+.+++..+ ++-.-..+|.++.+|+.+.+..+ ++ .++..  ....+|.
T Consensus       286 ~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          286 NCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALN  360 (394)
T ss_dssp             TCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCC
T ss_pred             cccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCC
Confidence            46778888885 5566 455 45888899999999865 55233457888899999988654 33 33332  3445666


Q ss_pred             cccccCCc
Q 045886           79 ASVYAGNL   86 (184)
Q Consensus        79 ~~~~~~N~   86 (184)
                      .+.+.++.
T Consensus       361 ~i~~~~~~  368 (394)
T 4gt6_A          361 NIEYSGSR  368 (394)
T ss_dssp             EEEESSCH
T ss_pred             EEEECCce
Confidence            66666653

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=88.54  E-value=0.24  Score=27.25  Aligned_cols=25  Identities=20%  Similarity=0.122  Sum_probs=11.7

Q ss_pred             ehhhHHHHHHHHHHHHHHHhhcccc
Q 045886          129 VSSILGFFVGFWGVCGYLMLNRSWS  153 (184)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~  153 (184)
                      .+++.+++++++++++.++|.|+++
T Consensus        14 ~gVVgGv~~v~ii~~~~~~~~RRRr   38 (44)
T 2l2t_A           14 AGVIGGLFILVIVGLTFAVYVRRKS   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeehHHHHHHHHHHHHHHHHhhhhh
Confidence            3444445554444444445555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.74  E-value=0.77  Score=36.79  Aligned_cols=56  Identities=18%  Similarity=0.090  Sum_probs=35.2

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      +..++.+.+..+.+.   ...|..+.+|+.+.+..+ ++..-..+|..+.+|+.+++.++
T Consensus       275 ~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence            445555555544322   234677888888888765 55233456788888888888654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=87.30  E-value=1.4  Score=35.25  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN   62 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N   62 (184)
                      ++..|+.+.+..+..+ .-...|.++..|+.+.+. +.++..-...|..+.+|+.+++..+
T Consensus       263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~  321 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG  321 (394)
T ss_dssp             TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc
Confidence            4567888888665443 334457888899999986 4555233356888899999988654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=86.03  E-value=1.5  Score=34.61  Aligned_cols=62  Identities=15%  Similarity=0.063  Sum_probs=42.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      ++..|+.+.+..+ ++..-...|.++..|+.+.+..+ ++..-...|..+.+|+.+++.++.+.
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~  299 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE  299 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc
Confidence            3567888888665 55223345778888999988754 44223346788899999998877665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 1e-16
 Identities = 29/60 (48%), Positives = 37/60 (61%)

Query: 34  DLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNLELCGLPL 93
           DL  N   G++P  L+QL  L  L++S+NN  G+IP G  LQ F+ S YA N  LCG PL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 2   DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIP 45
            L  L ++N+S NNL G I P+ G L   D    + N      P
Sbjct: 266 QLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
            +L  L  + L  NN++      +  LT L  L  + N  S    SSL+ L+ +  L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 61  YNNSSGKIPLG--TQLQSFNAS 80
           +N  S   PL   T++     +
Sbjct: 360 HNQISDLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 3   LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           L  L  +  + N ++      +  LT++++L    N  S   P  L+ L+ +  L L+  
Sbjct: 328 LTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 2  DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           L   +   L + N+T  ++    +L  +  L   R     SI   +  L+ L  ++ S 
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 75

Query: 62 NNSSGKIPLG--TQLQSFNASVY 82
          N  +   PL   T+L     +  
Sbjct: 76 NQLTDITPLKNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
             + N ++      I   T+LD L L+ N        +L+ L+ L  LDL+ N  S   P
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

Query: 70  LG--TQLQSFNAS 80
           L   T+L      
Sbjct: 259 LSGLTKLTELKLG 271

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 5e-06
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 2  DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY 61
           +   + VN  + NLT  + P +        L LS NL      ++L   + L  L+L  
Sbjct: 8  KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 62 NN 63
            
Sbjct: 65 AE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 12  SRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
           + NNLT      +  L +LD L L  N    +IP        L    L  N
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 16/54 (29%), Positives = 21/54 (38%)

Query: 10 NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNN 63
          +L  N +T         L +L  L L  N  S   P + + L  L  L LS N 
Sbjct: 37 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 3/61 (4%)

Query: 9  VNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKI 68
          V  S   L   +   +        LDL  N  +         L  L  L L  N  S   
Sbjct: 15 VQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 71

Query: 69 P 69
          P
Sbjct: 72 P 72

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 1   MDLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLS 60
             +  L  + ++  N+T   T   G   SL  L L  N  +    +SL  L+ L  L LS
Sbjct: 147 QGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 61  YNNSSGKIPLGTQLQSFNASVYAGNLELCGLP 92
           +N+ S               ++  N +L  +P
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-05
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 10 NLSRNNLTGPITPKIGE-LTSLDFLDLSRNLFSG----SIPSSLSQLSGLGVLDLSYNN- 63
          ++    L+     ++   L     + L     +      I S+L     L  L+L  N  
Sbjct: 8  DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 64 -SSGKIPLGTQLQSFNASVYAGNLELCG 90
             G   +   LQ+ +  +   +L+ C 
Sbjct: 68 GDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-05
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 6   LIAVNLSRNNLTGPITPKIGE----LTSLDFLDLSRNLFSGSIPSSLSQ-----LSGLGV 56
           L  + L+  +++      +        SL  LDLS N    +    L +        L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 57  LDLSYNNSSGKIP 69
           L L     S ++ 
Sbjct: 431 LVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 9/70 (12%)

Query: 3  LVGLIAVNLSRNNLTG----PITPKIGELTSLDFLDLSRNLFSGSIPSSLSQL-----SG 53
          L     V L    LT      I+  +    +L  L+L  N         + Q        
Sbjct: 26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 54 LGVLDLSYNN 63
          +  L L    
Sbjct: 86 IQKLSLQNCC 95

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 5  GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSG-SIPSSLSQLSGLGVLDLSYNN 63
          G+IA    R+ +  P+  +      +  +DLS ++    ++   LSQ S L  L L    
Sbjct: 24 GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 64 SSGKIP 69
           S  I 
Sbjct: 83 LSDPIV 88

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 10  NLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
               N  +  I        SL+ L++S N     +P+   +L     L  S+N+ +    
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPE 321

Query: 70  LGTQLQSFNASVYAGNLELCGLP 92
           L   L+  +         L   P
Sbjct: 322 LPQNLKQLHVE----YNPLREFP 340

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 3  LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYN 62
          L   I +   ++N+T  +T    +L  +  L       + +I   +  L+ L  L+L  N
Sbjct: 18 LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDN 73

Query: 63 N 63
           
Sbjct: 74 Q 74

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 10  NLSRNNLTGPITPKIGE------LTSLDFLDLSRNLFSGSIPSSL-----SQLSGLGVLD 58
            L+   L+      + +         L  L L  N        +L      ++  L  L+
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 59  LSYNNSSGKIPLGTQLQSFNASVYAGNLE 87
           L+ N  S +  +  +++   ++   G L+
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRGELD 337

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 3/43 (6%)

Query: 27  LTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP 69
            +    LD+SR          L  L  L         +  K+P
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST---YNLKKLP 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.33
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.22
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.17
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.17
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.07
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.02
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.52
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.29
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.16
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.9
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.4
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.58  E-value=6.4e-16  Score=120.99  Aligned_cols=94  Identities=39%  Similarity=0.621  Sum_probs=86.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      .++.++.+++++|.+.+.+| .++.+++|+.|++++|+++|.+|+.++++++|++||+++|+|+|.+|....++++..++
T Consensus       219 ~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~  297 (313)
T d1ogqa_         219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA  297 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred             cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHH
Confidence            56789999999999997655 68899999999999999999999999999999999999999999999888899999999


Q ss_pred             ccCCcCCCCCCCCCCC
Q 045886           82 YAGNLELCGLPLANMC   97 (184)
Q Consensus        82 ~~~N~~lc~~~~~~~C   97 (184)
                      +.+|+.+||.|++ .|
T Consensus       298 l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         298 YANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TCSSSEEESTTSS-CC
T ss_pred             hCCCccccCCCCC-CC
Confidence            9999999998764 45

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=3.8e-14  Score=103.74  Aligned_cols=91  Identities=25%  Similarity=0.245  Sum_probs=71.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|+.|+|++|.+.+..+..|..+++|+.|++++|++++..|..|.++++|++|+|++|+|++..|.. ..+.++..+
T Consensus        52 ~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             CCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccc
Confidence            4677888888888888777777888888888888888888666667888888888888888888776664 456777888


Q ss_pred             cccCCcCCCCCC
Q 045886           81 VYAGNLELCGLP   92 (184)
Q Consensus        81 ~~~~N~~lc~~~   92 (184)
                      ++.+|++.|.+.
T Consensus       132 ~L~~N~~~~~~~  143 (192)
T d1w8aa_         132 NLASNPFNCNCH  143 (192)
T ss_dssp             ECTTCCBCCSGG
T ss_pred             cccccccccccc
Confidence            888888888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.3e-13  Score=96.61  Aligned_cols=92  Identities=20%  Similarity=0.166  Sum_probs=77.2

Q ss_pred             CCcCCceeeeccC-CCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcc
Q 045886            2 DLVGLIAVNLSRN-NLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~   80 (184)
                      .+++|++|++++| .++...+..|.++++|+.|++++|+|+...|..|..+++|+.|++++|+++...+.......+..+
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL  108 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred             CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccccc
Confidence            4678899999876 488544567999999999999999999666788999999999999999999666655444568889


Q ss_pred             cccCCcCCCCCCC
Q 045886           81 VYAGNLELCGLPL   93 (184)
Q Consensus        81 ~~~~N~~lc~~~~   93 (184)
                      ++++||+.|.|..
T Consensus       109 ~L~~Np~~C~C~~  121 (156)
T d2ifga3         109 VLSGNPLHCSCAL  121 (156)
T ss_dssp             ECCSSCCCCCGGG
T ss_pred             ccCCCcccCCchH
Confidence            9999999998743

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=1.4e-12  Score=88.98  Aligned_cols=83  Identities=22%  Similarity=0.253  Sum_probs=57.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC--CccccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP--LGTQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p--~~~~l~~l~~   79 (184)
                      .+..|++||+++|.++ .+|+.++.+++|+.|++++|.++ .+|. +..+++|+++++++|+++....  ....+..+..
T Consensus        18 ~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          18 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             cCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-cccccccCeEECCCCccCCCCCchhhcCCCCCCE
Confidence            4567777788888777 66777777777888888888777 4553 7777778888888777765432  1244556667


Q ss_pred             ccccCCcC
Q 045886           80 SVYAGNLE   87 (184)
Q Consensus        80 ~~~~~N~~   87 (184)
                      +++.+|+.
T Consensus        95 L~l~~N~i  102 (124)
T d1dcea3          95 LNLQGNSL  102 (124)
T ss_dssp             EECTTSGG
T ss_pred             EECCCCcC
Confidence            77777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.7e-12  Score=98.06  Aligned_cols=92  Identities=21%  Similarity=0.103  Sum_probs=77.3

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      .+..++.|++++|.++...+..+..++.|+.+++++|++++..+..|..+++|++||+++|+|+...+....+..+..+.
T Consensus       122 ~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred             cccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEE
Confidence            35677888888898885555667889999999999999997777789999999999999999994434446778899999


Q ss_pred             ccCCcCCCCCCC
Q 045886           82 YAGNLELCGLPL   93 (184)
Q Consensus        82 ~~~N~~lc~~~~   93 (184)
                      +.|||+.|+|..
T Consensus       202 L~~Np~~CdC~~  213 (266)
T d1p9ag_         202 LHGNPWLCNCEI  213 (266)
T ss_dssp             CCSCCBCCSGGG
T ss_pred             ecCCCCCCCcch
Confidence            999999998753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.4e-12  Score=99.04  Aligned_cols=92  Identities=25%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .+..|+.|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++||+++|++.+..|.. ..+.++..+
T Consensus       151 ~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             cccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence            4567888888888888666677888888888999988888877888888889999999999998777654 466778888


Q ss_pred             cccCCcCCCCCCC
Q 045886           81 VYAGNLELCGLPL   93 (184)
Q Consensus        81 ~~~~N~~lc~~~~   93 (184)
                      ++++|++.|.|+.
T Consensus       231 ~l~~N~l~C~C~~  243 (284)
T d1ozna_         231 RLNDNPWVCDCRA  243 (284)
T ss_dssp             ECCSSCEECSGGG
T ss_pred             EecCCCCCCCccc
Confidence            9999999998753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.4e-11  Score=83.88  Aligned_cols=78  Identities=24%  Similarity=0.295  Sum_probs=68.4

Q ss_pred             ceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccccCCc
Q 045886            7 IAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYAGNL   86 (184)
Q Consensus         7 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~~N~   86 (184)
                      ++|||++|+++ .++ .+..++.|++|++++|+++ .+|+.+..+++|+.|++++|+++.. |....+..+..+++.+|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-CccccccccCeEECCCCc
Confidence            57999999999 676 4899999999999999999 7898999999999999999999864 556777888888888886


Q ss_pred             CC
Q 045886           87 EL   88 (184)
Q Consensus        87 ~l   88 (184)
                      ..
T Consensus        77 i~   78 (124)
T d1dcea3          77 LQ   78 (124)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=2.9e-11  Score=87.99  Aligned_cols=86  Identities=22%  Similarity=0.205  Sum_probs=74.4

Q ss_pred             cCCceeeeccCCCCCCCC-cccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCccc
Q 045886            4 VGLIAVNLSRNNLTGPIT-PKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASV   81 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~   81 (184)
                      +.+++|+|++|+|++.++ ..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..|.. ..+..+..++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            468999999999986554 55889999999999999999888889999999999999999999877765 5688888999


Q ss_pred             ccCCcCCC
Q 045886           82 YAGNLELC   89 (184)
Q Consensus        82 ~~~N~~lc   89 (184)
                      +++|....
T Consensus       109 L~~N~l~~  116 (192)
T d1w8aa_         109 LYDNQISC  116 (192)
T ss_dssp             CCSSCCCE
T ss_pred             cCCccccc
Confidence            99886543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.17  E-value=6.1e-12  Score=97.87  Aligned_cols=83  Identities=29%  Similarity=0.419  Sum_probs=61.2

Q ss_pred             CCceeeeccCCCCC--CCCcccCCCCCCCEeeccC-CcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            5 GLIAVNLSRNNLTG--PITPKIGELTSLDFLDLSR-NLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~ls~-N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      .++.|+|++|.++|  .+|+++++|++|++|+|++ |+++|.+|+.++++++|++|++++|++.+..|.. ..+..+..+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46778888888877  4778888888888888876 7888888888888888888888888887766653 344445555


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++..|..
T Consensus       131 ~l~~N~~  137 (313)
T d1ogqa_         131 DFSYNAL  137 (313)
T ss_dssp             ECCSSEE
T ss_pred             ccccccc
Confidence            5555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=7.2e-11  Score=83.91  Aligned_cols=83  Identities=17%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++..+++|||++|+|+ .+|..+..+++|+.|++++|+++ .++ .+..+++|+.|++++|+++...+.. ..+..+..+
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4567889999999999 77776788999999999999999 664 4888999999999999998766654 457788888


Q ss_pred             cccCCcC
Q 045886           81 VYAGNLE   87 (184)
Q Consensus        81 ~~~~N~~   87 (184)
                      ++.+|..
T Consensus        93 ~L~~N~i   99 (162)
T d1a9na_          93 ILTNNSL   99 (162)
T ss_dssp             ECCSCCC
T ss_pred             eeccccc
Confidence            8888864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.4e-10  Score=82.33  Aligned_cols=84  Identities=19%  Similarity=0.054  Sum_probs=67.9

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC--CccccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP--LGTQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p--~~~~l~~l~~   79 (184)
                      .++.|+.|||++|+++ .++ .+..+++|+.|++++|+++...+..+..+++|+.|++++|+++....  ....++++..
T Consensus        39 ~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          39 TLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY  116 (162)
T ss_dssp             GTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             ccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccch
Confidence            4678999999999999 664 58899999999999999994333445779999999999999985422  2256677888


Q ss_pred             ccccCCcC
Q 045886           80 SVYAGNLE   87 (184)
Q Consensus        80 ~~~~~N~~   87 (184)
                      +++.+|+.
T Consensus       117 L~l~~N~i  124 (162)
T d1a9na_         117 LCILRNPV  124 (162)
T ss_dssp             EECCSSGG
T ss_pred             hhcCCCcc
Confidence            88988874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=7.5e-10  Score=85.37  Aligned_cols=86  Identities=22%  Similarity=0.195  Sum_probs=51.0

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-------cccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-------TQLQ   75 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-------~~l~   75 (184)
                      ++.+++|++++|.+++..+..+.++++|+.|+|++|.|+ .+|.++..+++|++|++++|+++......       ....
T Consensus       194 ~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~  272 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA  272 (305)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred             cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccC
Confidence            455666666666666555555666666666666666666 56666666666666666666666432211       1233


Q ss_pred             cCCcccccCCcCCC
Q 045886           76 SFNASVYAGNLELC   89 (184)
Q Consensus        76 ~l~~~~~~~N~~lc   89 (184)
                      ++..+++.+||+-+
T Consensus       273 ~L~~L~L~~N~~~~  286 (305)
T d1xkua_         273 SYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCSEEECCSSSSCG
T ss_pred             CCCEEECCCCcCcc
Confidence            45555566666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.6e-10  Score=84.89  Aligned_cols=81  Identities=26%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccccc
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVYA   83 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~~   83 (184)
                      +.+++|+|++|+|++..+..|.++++|++|+|++|+|+ .+|. ++.+++|+.|++++|++++..+....+..+..+++.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccccccccccccccccccccc
Confidence            46889999999998544566889999999999999998 6664 578889999999999998766655566666666665


Q ss_pred             CCc
Q 045886           84 GNL   86 (184)
Q Consensus        84 ~N~   86 (184)
                      +|.
T Consensus       109 ~~~  111 (266)
T d1p9ag_         109 FNR  111 (266)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.8e-09  Score=74.97  Aligned_cols=63  Identities=24%  Similarity=0.084  Sum_probs=55.5

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +++.|+.|+|++|+|+...|..|..+++|+.|+|++|+|+ .+|.......+|+.|++++|.+.
T Consensus        54 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          54 GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            5789999999999999666777999999999999999999 77776666668999999999885

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.3e-09  Score=80.41  Aligned_cols=85  Identities=22%  Similarity=0.171  Sum_probs=48.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNAS   80 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~   80 (184)
                      ++++|++|++++|.+....+..+..+..|+.+++++|.+++..+..|..++.|+.|++++|++++..+.. ..+.++..+
T Consensus       103 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchh
Confidence            3556666666666666444445556666666666666666444455566666666666666666544433 334445555


Q ss_pred             cccCCc
Q 045886           81 VYAGNL   86 (184)
Q Consensus        81 ~~~~N~   86 (184)
                      .+.+|.
T Consensus       183 ~l~~N~  188 (284)
T d1ozna_         183 LLHQNR  188 (284)
T ss_dssp             ECCSSC
T ss_pred             hhhhcc
Confidence            554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=2.6e-09  Score=84.12  Aligned_cols=78  Identities=26%  Similarity=0.292  Sum_probs=57.1

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +..++.|++++|++++ ++ .+..+++|+.|++++|+++ .+| .+..+++|++|++++|++++.+| ...++.+..+++
T Consensus       306 ~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L  380 (384)
T d2omza2         306 LKNLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL  380 (384)
T ss_dssp             CTTCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEC
T ss_pred             hcccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeC
Confidence            5677888888888884 33 2677888888888888887 455 57888888888888888886654 445666666666


Q ss_pred             cCC
Q 045886           83 AGN   85 (184)
Q Consensus        83 ~~N   85 (184)
                      ++|
T Consensus       381 ~~N  383 (384)
T d2omza2         381 NDQ  383 (384)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.74  E-value=1e-08  Score=78.87  Aligned_cols=85  Identities=21%  Similarity=0.086  Sum_probs=72.3

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +++|+.|++++|...+..+..+..++.++.|++++|.+++..|..+..+++|+.|++++|+++...+....+.+++.+++
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEEC
Confidence            46788999999999988888899999999999999999977788889999999999999999865444466788888888


Q ss_pred             cCCcC
Q 045886           83 AGNLE   87 (184)
Q Consensus        83 ~~N~~   87 (184)
                      ++|..
T Consensus       250 s~N~i  254 (305)
T d1xkua_         250 HNNNI  254 (305)
T ss_dssp             CSSCC
T ss_pred             CCCcc
Confidence            88763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=4.5e-08  Score=72.22  Aligned_cols=76  Identities=20%  Similarity=0.221  Sum_probs=52.0

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      ++++|+.|++++|.+.+ ++ .++++++|+.|++++|+++ .+|. +..+++|++|++++|++++.. ....+..|..++
T Consensus       149 ~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~  223 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT  223 (227)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEE
T ss_pred             ccccccccccccccccc-ch-hhcccccceecccCCCccC-CChh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEE
Confidence            35667888888888773 33 2777888888888888887 4544 777888888888888877543 334455555544


Q ss_pred             c
Q 045886           82 Y   82 (184)
Q Consensus        82 ~   82 (184)
                      +
T Consensus       224 l  224 (227)
T d1h6ua2         224 L  224 (227)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=9.1e-08  Score=69.29  Aligned_cols=58  Identities=19%  Similarity=0.267  Sum_probs=28.6

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      ..++.|++++|.++ .++ .+..+++|++|++++|++++ +++ +..+++|++|++++|.+.
T Consensus        40 ~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          40 DQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             TTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             cCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc
Confidence            34555555555554 332 24445555555555555552 222 455555555555555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.53  E-value=8.9e-08  Score=75.03  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=56.9

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +.+|++|++++|.++ .+ +.+..+++|++|++++|+++ .+|+ +.++++|++|++++|++.+..| ...+..+..+..
T Consensus        43 l~~l~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~l~-~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          43 LDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HTTCCEEECCSSCCC-CC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hCCCCEEECCCCCCC-Cc-cccccCCCCCEEeCcCCcCC-CCcc-ccCCcccccccccccccccccc-cccccccccccc
Confidence            457888888888887 45 35778888888888888888 4554 7888888888888888876443 345555655555


Q ss_pred             cCC
Q 045886           83 AGN   85 (184)
Q Consensus        83 ~~N   85 (184)
                      .+|
T Consensus       118 ~~~  120 (384)
T d2omza2         118 FNN  120 (384)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=9e-08  Score=69.95  Aligned_cols=79  Identities=20%  Similarity=0.219  Sum_probs=52.8

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +.+|+.|++++|.++ .++ .+..+++|+.|++++|.+++ ++. ++.+++|+.|++++|++++ +|....+..+..+.+
T Consensus        45 L~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~~-l~~-~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCccccC-ccc-cccCccccccccccccccc-ccccccccccccccc
Confidence            456777888888777 343 36677788888888888774 443 5677788888888887765 333444556666666


Q ss_pred             cCCc
Q 045886           83 AGNL   86 (184)
Q Consensus        83 ~~N~   86 (184)
                      .+|.
T Consensus       120 ~~~~  123 (210)
T d1h6ta2         120 EHNG  123 (210)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            5554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=1.6e-07  Score=68.01  Aligned_cols=80  Identities=30%  Similarity=0.363  Sum_probs=62.6

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      +++.|+.|++++|.+.. ++ .+..+++|+.|++++|++. .+| .+..+++|+.|++++|++++.. ....+.++..++
T Consensus       104 ~l~~L~~L~l~~~~~~~-~~-~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~  178 (199)
T d2omxa2         104 NLTNLTGLTLFNNQITD-ID-PLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLD  178 (199)
T ss_dssp             TCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred             ccccccccccccccccc-cc-ccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc-cccCCCCCCEEE
Confidence            56788899999888873 33 4778889999999999988 454 4788889999999999888643 345677888888


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +.+|+
T Consensus       179 ls~N~  183 (199)
T d2omxa2         179 ISSNK  183 (199)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            88875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=1.7e-07  Score=68.41  Aligned_cols=79  Identities=29%  Similarity=0.344  Sum_probs=60.5

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      .+++|++|+|++|.+++ +++ ++.+++|+.|++++|+++ .+| .+..+++|+.+++++|.+.. ++....+..+....
T Consensus        66 ~l~~L~~L~L~~n~i~~-l~~-~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l~  140 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLY  140 (210)
T ss_dssp             GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEE
T ss_pred             hCCCCCEEeCCCccccC-ccc-cccCcccccccccccccc-ccc-cccccccccccccccccccc-cccccccccccccc
Confidence            47889999999999994 553 688999999999999999 566 48889999999999998864 33333444455555


Q ss_pred             ccCC
Q 045886           82 YAGN   85 (184)
Q Consensus        82 ~~~N   85 (184)
                      +.+|
T Consensus       141 ~~~n  144 (210)
T d1h6ta2         141 LGNN  144 (210)
T ss_dssp             CCSS
T ss_pred             cccc
Confidence            5444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.49  E-value=1.2e-09  Score=79.91  Aligned_cols=81  Identities=25%  Similarity=0.265  Sum_probs=60.0

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCccc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASV   81 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~   81 (184)
                      .+++|+.|+|++|+++ .++ .+..+++|+.|++++|.++ .+|.....+++|+.|++++|+++.. +....+.++..++
T Consensus        46 ~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          46 TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHHHSSEEE
T ss_pred             cccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-ccccccccccccc
Confidence            3677888888888888 565 4778888888888888888 6776555566788888888888753 3334566677777


Q ss_pred             ccCCc
Q 045886           82 YAGNL   86 (184)
Q Consensus        82 ~~~N~   86 (184)
                      +++|.
T Consensus       122 L~~N~  126 (198)
T d1m9la_         122 MSNNK  126 (198)
T ss_dssp             ESEEE
T ss_pred             cccch
Confidence            76664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.46  E-value=7.8e-10  Score=80.89  Aligned_cols=83  Identities=24%  Similarity=0.212  Sum_probs=67.8

Q ss_pred             CCcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCC--CccccccCCc
Q 045886            2 DLVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIP--LGTQLQSFNA   79 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p--~~~~l~~l~~   79 (184)
                      .+++|+.|+|++|.++ .+|..+..++.|+.|++++|+++ .++ .+..+++|+.|++++|+++....  ....+..+..
T Consensus        68 ~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T d1m9la_          68 GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             CCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccccchhccccccccccCCCccce
Confidence            4678999999999998 77776666778999999999999 554 48889999999999999975422  2256678888


Q ss_pred             ccccCCcC
Q 045886           80 SVYAGNLE   87 (184)
Q Consensus        80 ~~~~~N~~   87 (184)
                      +++.+|+.
T Consensus       145 L~L~~N~l  152 (198)
T d1m9la_         145 LLLAGNPL  152 (198)
T ss_dssp             EEECSSHH
T ss_pred             eecCCCcc
Confidence            88999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.29  E-value=7.2e-07  Score=68.58  Aligned_cols=54  Identities=26%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             cCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCC
Q 045886            4 VGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      ++|++|+|++|+++ .+|..   +++|+.|++++|+|+ .+|..   +++|++|++++|+++
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            45666666666666 55532   345566666666666 55542   345666666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.25  E-value=2.3e-06  Score=65.60  Aligned_cols=75  Identities=19%  Similarity=0.136  Sum_probs=41.2

Q ss_pred             CCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCC-----------------CCCCeeeccCCCCCCC
Q 045886            5 GLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQL-----------------SGLGVLDLSYNNSSGK   67 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l-----------------~~L~~l~ls~N~l~g~   67 (184)
                      ++++|||++|.++ .+|+.   +++|++|++++|+|+ .+|+.++++                 +.|++|++++|.+.. 
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~-  112 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-  112 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccchhhhhcccccccccccccccc-
Confidence            4566677777666 56642   345666667776666 566543221                 235566666666553 


Q ss_pred             CCCccccccCCcccccCC
Q 045886           68 IPLGTQLQSFNASVYAGN   85 (184)
Q Consensus        68 ~p~~~~l~~l~~~~~~~N   85 (184)
                      +|....+..+..+++.+|
T Consensus       113 lp~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         113 LPELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CCCCTTCTTCCEEECCSS
T ss_pred             ccchhhhccceeeccccc
Confidence            333344455555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.9e-07  Score=65.63  Aligned_cols=66  Identities=26%  Similarity=0.222  Sum_probs=36.4

Q ss_pred             CcCCceeeeccCCCCCC--CCcccCCCCCCCEeeccCCcCCCCCcc-cccCCCCCCeeeccCCCCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGP--ITPKIGELTSLDFLDLSRNLFSGSIPS-SLSQLSGLGVLDLSYNNSSGKIP   69 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~ls~N~l~g~~P~-~~~~l~~L~~l~ls~N~l~g~~p   69 (184)
                      ++.|++|+|++|+++..  ++..+..+++|+.|++++|.++ .+++ .+.....|+.+++++|.+.....
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcc
Confidence            45566666666666622  1222445666666666666666 3433 22333456666666666655443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=2e-06  Score=63.05  Aligned_cols=79  Identities=23%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             CcCCceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccCCCCCCCCCCccccccCCcccc
Q 045886            3 LVGLIAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSYNNSSGKIPLGTQLQSFNASVY   82 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~N~l~g~~p~~~~l~~l~~~~~   82 (184)
                      +.+|+.|++.+|.++ .++ .+..+++|+.|++++|++++ +++ +..+++++.+++++|.++. ++....++.+..+.+
T Consensus        40 l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~-~~~-l~~l~~l~~l~~~~n~~~~-i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeec-ccc-ccccccccccccccccccc-ccccccccccccccc
Confidence            567899999999998 564 58889999999999999984 433 7888999999999988863 444444555555555


Q ss_pred             cCCc
Q 045886           83 AGNL   86 (184)
Q Consensus        83 ~~N~   86 (184)
                      .++.
T Consensus       115 ~~~~  118 (227)
T d1h6ua2         115 TSTQ  118 (227)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            5443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.1e-06  Score=64.78  Aligned_cols=81  Identities=17%  Similarity=0.182  Sum_probs=54.2

Q ss_pred             cCCceeeeccCCCCCCCCc-ccCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeecc-CCCCCCCCCCc-cccccCCc
Q 045886            4 VGLIAVNLSRNNLTGPITP-KIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLS-YNNSSGKIPLG-TQLQSFNA   79 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls-~N~l~g~~p~~-~~l~~l~~   79 (184)
                      +++++|+|++|+++ .+|. .|.++++|++|++++|.+...+| ..|..++.++.+++. .|++....+.. ..+..+..
T Consensus        29 ~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            36788888888888 4544 57888888888888888775443 356677777777765 35555544443 34455666


Q ss_pred             ccccCC
Q 045886           80 SVYAGN   85 (184)
Q Consensus        80 ~~~~~N   85 (184)
                      +.+.+|
T Consensus       108 l~l~~~  113 (242)
T d1xwdc1         108 LLISNT  113 (242)
T ss_dssp             EEEESC
T ss_pred             cccchh
Confidence            655554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.3e-07  Score=65.19  Aligned_cols=65  Identities=22%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             CCCCCCCEeeccCCcCCCC--CcccccCCCCCCeeeccCCCCCCCCCCc-cccccCCcccccCCcCCC
Q 045886           25 GELTSLDFLDLSRNLFSGS--IPSSLSQLSGLGVLDLSYNNSSGKIPLG-TQLQSFNASVYAGNLELC   89 (184)
Q Consensus        25 ~~l~~L~~L~ls~N~l~g~--~P~~~~~l~~L~~l~ls~N~l~g~~p~~-~~l~~l~~~~~~~N~~lc   89 (184)
                      ..++.|+.|++++|+++..  ++..+..+++|+.||+++|.++...+-. .....+..+.+.|||..+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3578999999999999943  2345678999999999999998643321 223356778889998643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=8.5e-06  Score=59.80  Aligned_cols=72  Identities=14%  Similarity=0.132  Sum_probs=55.8

Q ss_pred             ceeeeccCCCCCCCCcccCCCCCCCEeeccCCcCCCCCc-ccccCCCCCCeeeccCCCCCCCCCCc--cccccCCcccc
Q 045886            7 IAVNLSRNNLTGPITPKIGELTSLDFLDLSRNLFSGSIP-SSLSQLSGLGVLDLSYNNSSGKIPLG--TQLQSFNASVY   82 (184)
Q Consensus         7 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~l~ls~N~l~g~~p~~--~~l~~l~~~~~   82 (184)
                      +.++.+++.++ .+|+.+.  +++++|++++|.++ .+| ..|.++++|++|++++|.+...+|..  ..+..+..+.+
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            57888999999 8988764  57999999999999 555 47899999999999999998766543  23444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0001  Score=55.63  Aligned_cols=36  Identities=31%  Similarity=0.283  Sum_probs=19.3

Q ss_pred             CCCCCCEeeccCC-cCCCCCcccccCCCCCCeeeccC
Q 045886           26 ELTSLDFLDLSRN-LFSGSIPSSLSQLSGLGVLDLSY   61 (184)
Q Consensus        26 ~l~~L~~L~ls~N-~l~g~~P~~~~~l~~L~~l~ls~   61 (184)
                      .+++|++|++++| .+++..+..+.++++|++|++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~  209 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  209 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCC
Confidence            4555555665553 34444444555555555665555

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=3.9e-05  Score=60.38  Aligned_cols=61  Identities=21%  Similarity=0.131  Sum_probs=25.4

Q ss_pred             CCceeeeccCCCCCCCCcc----cCCCCCCCEeeccCCcCCCC----Cccccc-CCCCCCeeeccCCCCC
Q 045886            5 GLIAVNLSRNNLTGPITPK----IGELTSLDFLDLSRNLFSGS----IPSSLS-QLSGLGVLDLSYNNSS   65 (184)
Q Consensus         5 ~L~~L~Ls~N~l~g~~p~~----~~~l~~L~~L~ls~N~l~g~----~P~~~~-~l~~L~~l~ls~N~l~   65 (184)
                      .|+.+++++|.++..-...    +...++|++|+|++|.++..    ++..+. ..+.|+.|++++|+++
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence            3455555555544221111    12233455555555554321    122221 1334555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=5.8e-05  Score=57.01  Aligned_cols=58  Identities=22%  Similarity=0.218  Sum_probs=31.9

Q ss_pred             cCCceeeeccCCCCCC-CCcccCCCCCCCEeeccCCcCCCCCcccccCCCCCCeeeccC
Q 045886            4 VGLIAVNLSRNNLTGP-ITPKIGELTSLDFLDLSRNLFSGSIPSSLSQLSGLGVLDLSY   61 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~l~ls~   61 (184)
                      ..|++|||+++.++.. ++..+..+++|++|+++++.+++..+..++++++|++|++++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3455666666555422 223345556666666666665555555555556666666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00015  Score=56.93  Aligned_cols=38  Identities=24%  Similarity=0.197  Sum_probs=18.5

Q ss_pred             cCCceeeeccCCCCC----CCCcccCCCCCCCEeeccCCcCC
Q 045886            4 VGLIAVNLSRNNLTG----PITPKIGELTSLDFLDLSRNLFS   41 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~   41 (184)
                      ++++.|+|++|.++-    .+...+..+++|+.|||++|.++
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            445555555555541    12222344555555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.47  E-value=0.00033  Score=53.75  Aligned_cols=61  Identities=21%  Similarity=0.172  Sum_probs=27.9

Q ss_pred             cCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC-----CcccccCCCCCCeeeccCCCC
Q 045886            4 VGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS-----IPSSLSQLSGLGVLDLSYNNS   64 (184)
Q Consensus         4 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~-----~P~~~~~l~~L~~l~ls~N~l   64 (184)
                      ..|+.|++++|.++..    +...+.....|+.|++++|.++..     +...+...++|+.|++++|.+
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccc
Confidence            3455555555554411    111223344555555555555421     122234455555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.40  E-value=0.00027  Score=54.27  Aligned_cols=64  Identities=22%  Similarity=0.211  Sum_probs=43.8

Q ss_pred             CcCCceeeeccCCCCCC-----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGP-----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~-----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +..|+.|+|++|+++..     +...+...++|+.|++++|.++..    +...+...++|++|++++|.++.
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            45678888888887621     233456677888888888877522    33455677788888888887753

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.70  E-value=0.002  Score=44.44  Aligned_cols=65  Identities=17%  Similarity=0.192  Sum_probs=46.9

Q ss_pred             CCcCCceeeeccC-CCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCCC
Q 045886            2 DLVGLIAVNLSRN-NLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSSG   66 (184)
Q Consensus         2 ~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~g   66 (184)
                      +.+.|++|+|+++ .++..    +-..+...+.|+.|++++|.+...    +-..+...+.|+.|++++|.++.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            4578999999974 46521    223355678899999999998732    22345567899999999998863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.43  E-value=0.0024  Score=44.05  Aligned_cols=63  Identities=13%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             CcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeeccCCCCC
Q 045886            3 LVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         3 l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~ls~N~l~   65 (184)
                      .+.|+.|+|++|.+...    +-..+...+.|++|++++|.++..    +-..+..-++|++|++++|...
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            46799999999998722    222344578899999999999843    1123556688999999998765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.54  E-value=0.015  Score=39.46  Aligned_cols=64  Identities=19%  Similarity=0.142  Sum_probs=44.2

Q ss_pred             CCcCCceeeecc-CCCCCC----CCcccCCCCCCCEeeccCCcCCCCCc----ccccCCCCCCeeeccCCCCC
Q 045886            2 DLVGLIAVNLSR-NNLTGP----ITPKIGELTSLDFLDLSRNLFSGSIP----SSLSQLSGLGVLDLSYNNSS   65 (184)
Q Consensus         2 ~l~~L~~L~Ls~-N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~~P----~~~~~l~~L~~l~ls~N~l~   65 (184)
                      +.+.|++|+|++ +.++..    +-..+...+.|++|++++|.++..--    ..+...++++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            457889999987 456511    22334577889999999998873311    23455688999999888775

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.44  E-value=0.06  Score=36.32  Aligned_cols=63  Identities=16%  Similarity=0.184  Sum_probs=44.0

Q ss_pred             CCcCCceeeeccCCCCCC----CCcccCCCCCCCEeeccCCcCCCC----CcccccCCCCCCeeec--cCCCC
Q 045886            2 DLVGLIAVNLSRNNLTGP----ITPKIGELTSLDFLDLSRNLFSGS----IPSSLSQLSGLGVLDL--SYNNS   64 (184)
Q Consensus         2 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~l~l--s~N~l   64 (184)
                      ..+.|++|+|++|.++..    +-..+...+.++.+++++|.+...    +-..+...++|+.+++  ++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcC
Confidence            357899999999998733    212344578899999999998733    2244567788887555  45555