Citrus Sinensis ID: 045895
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 194 | ||||||
| 356555871 | 661 | PREDICTED: lysosomal beta glucosidase-li | 0.979 | 0.287 | 0.763 | 3e-82 | |
| 356533037 | 662 | PREDICTED: lysosomal beta glucosidase-li | 0.984 | 0.288 | 0.744 | 1e-79 | |
| 255546789 | 648 | Periplasmic beta-glucosidase precursor, | 0.938 | 0.280 | 0.747 | 3e-78 | |
| 449434540 | 658 | PREDICTED: lysosomal beta glucosidase-li | 0.902 | 0.265 | 0.794 | 4e-77 | |
| 449493415 | 658 | PREDICTED: LOW QUALITY PROTEIN: lysosoma | 0.902 | 0.265 | 0.782 | 9e-75 | |
| 357448467 | 660 | Beta-D-glucosidase [Medicago truncatula] | 0.984 | 0.289 | 0.691 | 2e-74 | |
| 297806471 | 668 | glycosyl hydrolase family 3 protein [Ara | 0.974 | 0.282 | 0.678 | 1e-73 | |
| 26451217 | 568 | unknown protein [Arabidopsis thaliana] | 0.974 | 0.332 | 0.668 | 6e-73 | |
| 30680681 | 665 | Glycosyl hydrolase family protein [Arabi | 0.979 | 0.285 | 0.664 | 9e-73 | |
| 296084436 | 619 | unnamed protein product [Vitis vinifera] | 0.969 | 0.303 | 0.732 | 1e-70 |
| >gi|356555871|ref|XP_003546253.1| PREDICTED: lysosomal beta glucosidase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/190 (76%), Positives = 168/190 (88%)
Query: 4 GTTILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD 63
GTTIL AI+SAVD+STEVV+RDNPD++FVKSNNF+YAIV VGE PYAETAGDS TLTM++
Sbjct: 470 GTTILNAIKSAVDTSTEVVFRDNPDNEFVKSNNFEYAIVVVGEPPYAETAGDSTTLTMME 529
Query: 64 PDPSVITNVCEAVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDYGF 123
P+VI NVC VKCVV+IISGRPIVIEPYISS+DALVAAWLPGTEGQG+TDVLFGDYGF
Sbjct: 530 SGPNVINNVCGTVKCVVVIISGRPIVIEPYISSIDALVAAWLPGTEGQGMTDVLFGDYGF 589
Query: 124 SGKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGLKTESVPSIVARSTSAGVDGKPFVFLV 183
+GKL R+WFK+VDQLPMNVGDPHYDPLFPF FGL TESV +VARSTSA V + +F +
Sbjct: 590 TGKLARTWFKSVDQLPMNVGDPHYDPLFPFGFGLTTESVKDLVARSTSAAVGARACIFTI 649
Query: 184 MISLIFALYF 193
+++LI +LY
Sbjct: 650 IVTLIISLYL 659
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533037|ref|XP_003535075.1| PREDICTED: lysosomal beta glucosidase-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255546789|ref|XP_002514453.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] gi|223546449|gb|EEF47949.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449434540|ref|XP_004135054.1| PREDICTED: lysosomal beta glucosidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449493415|ref|XP_004159282.1| PREDICTED: LOW QUALITY PROTEIN: lysosomal beta glucosidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357448467|ref|XP_003594509.1| Beta-D-glucosidase [Medicago truncatula] gi|355483557|gb|AES64760.1| Beta-D-glucosidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|297806471|ref|XP_002871119.1| glycosyl hydrolase family 3 protein [Arabidopsis lyrata subsp. lyrata] gi|297316956|gb|EFH47378.1| glycosyl hydrolase family 3 protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|26451217|dbj|BAC42711.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|30680681|ref|NP_680141.2| Glycosyl hydrolase family protein [Arabidopsis thaliana] gi|110738527|dbj|BAF01189.1| hypothetical protein [Arabidopsis thaliana] gi|332003416|gb|AED90799.1| Glycosyl hydrolase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|296084436|emb|CBI24995.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 194 | ||||||
| TAIR|locus:504954860 | 665 | AT5G04885 [Arabidopsis thalian | 0.974 | 0.284 | 0.668 | 1.1e-69 | |
| TAIR|locus:2147102 | 626 | AT5G20940 [Arabidopsis thalian | 0.814 | 0.252 | 0.687 | 1.3e-59 | |
| TAIR|locus:2147117 | 624 | AT5G20950 [Arabidopsis thalian | 0.809 | 0.251 | 0.687 | 1.3e-59 | |
| TAIR|locus:2081605 | 650 | AT3G62710 [Arabidopsis thalian | 0.804 | 0.24 | 0.601 | 2.3e-48 | |
| TAIR|locus:2075621 | 608 | AT3G47000 [Arabidopsis thalian | 0.819 | 0.261 | 0.546 | 1.9e-42 | |
| TAIR|locus:2075571 | 612 | AT3G47050 [Arabidopsis thalian | 0.819 | 0.259 | 0.534 | 6.6e-42 | |
| TAIR|locus:2075636 | 609 | AT3G47010 [Arabidopsis thalian | 0.793 | 0.252 | 0.544 | 3.6e-41 | |
| TIGR_CMR|CPS_3725 | 605 | CPS_3725 "glycosyl hydrolase, | 0.731 | 0.234 | 0.416 | 3.1e-20 | |
| TIGR_CMR|CPS_3740 | 599 | CPS_3740 "putative endoglucana | 0.541 | 0.175 | 0.4 | 1.1e-18 | |
| TIGR_CMR|CPS_3739 | 740 | CPS_3739 "periplasmic beta-glu | 0.587 | 0.154 | 0.380 | 5.6e-16 |
| TAIR|locus:504954860 AT5G04885 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 127/190 (66%), Positives = 161/190 (84%)
Query: 4 GTTILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLD 63
GTT+L A++SAVD STEVV+R+NPD++F+KSNNF YAI+AVGE PYAETAGDS LTMLD
Sbjct: 468 GTTLLSAVKSAVDQSTEVVFRENPDAEFIKSNNFAYAIIAVGEPPYAETAGDSDKLTMLD 527
Query: 64 PDPSVITNVCEAVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDYGF 123
P P++I++ C+AVKCVV++ISGRP+V+EPY++S+DALVAAWLPGTEGQG+TD LFGD+GF
Sbjct: 528 PGPAIISSTCQAVKCVVVVISGRPLVMEPYVASIDALVAAWLPGTEGQGITDALFGDHGF 587
Query: 124 SGKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGLKTESVPSIVARSTSAGVDG-KPFVFL 182
SGKLP +WF+ +QLPM+ GD HYDPLF + GL+TESV SIVARSTSA KP ++
Sbjct: 588 SGKLPVTWFRNTEQLPMSYGDTHYDPLFAYGSGLETESVASIVARSTSASATNTKPCLYT 647
Query: 183 VMISLIFALY 192
V++S L+
Sbjct: 648 VLVSATLCLF 657
|
|
| TAIR|locus:2147102 AT5G20940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2147117 AT5G20950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2081605 AT3G62710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2075621 AT3G47000 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2075571 AT3G47050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2075636 AT3G47010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_3725 CPS_3725 "glycosyl hydrolase, family 3" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_3740 CPS_3740 "putative endoglucanase A" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_3739 CPS_3739 "periplasmic beta-glucosidase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 194 | |||
| pfam01915 | 221 | pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam | 4e-38 | |
| PRK15098 | 765 | PRK15098, PRK15098, beta-D-glucoside glucohydrolas | 6e-15 | |
| PLN03080 | 779 | PLN03080, PLN03080, Probable beta-xylosidase; Prov | 0.003 |
| >gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-38
Identities = 63/172 (36%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 4 GTTILGAIRSAVDSSTEVVYR-------DNPDSDFVKS-NNFDYAIVAVGEAPY----AE 51
T L IR+ ++T VVY D ++ V + + D AIV VG E
Sbjct: 46 LVTPLDGIRARAGNATVVVYGGSNLEDDDTGIAEAVAAAKDADVAIVFVGSDAGEGYINE 105
Query: 52 TAGDSMTLTMLDPDPSVITNVCEAVK-CVVIIISGRPIVIEPYISSVDALVAAWLPGTE- 109
GD LT+ +I V A K VV++ SG P+ +EP+I +VDA++AAW PG E
Sbjct: 106 VNGDRTDLTLPGNQDELIEAVAAAGKPVVVVLHSGGPVDMEPWIDNVDAILAAWYPGQEG 165
Query: 110 GQGVTDVLFGDYGFSGKLPRSWFKTVDQLP----MNVGDPHYDPLFPFDFGL 157
G + DVLFGD SGKLP ++ K++ P DPL+PF GL
Sbjct: 166 GNAIADVLFGDVNPSGKLPVTFPKSLGDYPVYYGRTYRYDPGDPLYPFGEGL 217
|
This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. Length = 221 |
| >gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 194 | |||
| PRK15098 | 765 | beta-D-glucoside glucohydrolase; Provisional | 100.0 | |
| PLN03080 | 779 | Probable beta-xylosidase; Provisional | 100.0 | |
| PF01915 | 227 | Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter | 100.0 |
| >PRK15098 beta-D-glucoside glucohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=330.36 Aligned_cols=168 Identities=28% Similarity=0.540 Sum_probs=145.8
Q ss_pred CCccCHHHHHHhhcCCCcEEEEecCCC------------------------------hhhhhcCCCCEEEEEecCCCccc
Q 045895 2 ATGTTILGAIRSAVDSSTEVVYRDNPD------------------------------SDFVKSNNFDYAIVAVGEAPYAE 51 (194)
Q Consensus 2 ~~~~t~~~~l~~~~~~~~~v~~~~~~~------------------------------~~~~~a~~aD~vIv~vg~~~~~e 51 (194)
++.+||++||+++++++.++.|..||+ ++++++++||+|||++|+....+
T Consensus 437 ~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~ 516 (765)
T PRK15098 437 DQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMA 516 (765)
T ss_pred CCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCcc
Confidence 356899999999887666788877652 13456789999999999876445
Q ss_pred ccC-CCCCCCCCCChHHHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCch-HHHHHHHHcCCCCCCCCcc
Q 045895 52 TAG-DSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLP 128 (194)
Q Consensus 52 ~~g-dr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~~-g~AlAdvL~G~~nPsGkLP 128 (194)
.|+ ||.+|.||+.|.+||+++++ ++|+|+|+++|+|++|.++.++++|||++|+||++ |+|+||+|||++|||||||
T Consensus 517 ~E~~Dr~~l~Lp~~Q~~Li~~v~~~~~~vVvVl~~g~P~~l~~~~~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLP 596 (765)
T PRK15098 517 HEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLP 596 (765)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHhCcCEEEEEeCCceeeccchhhcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCc
Confidence 555 99999999999999999988 89999999999999996444599999999999999 9999999999999999999
Q ss_pred eeecCCCCCCCccC-----------------CCCCC----CccCCCcccCCCCccccccccc
Q 045895 129 RSWFKTVDQLPMNV-----------------GDPHY----DPLFPFDFGLKTESVPSIVARS 169 (194)
Q Consensus 129 vT~p~~~~~~p~~~-----------------~~~~~----~p~ypFG~GLsYt~f~~~~~~~ 169 (194)
+|||++.+|+|.++ +|||| +|+||||||||||+|+|+++..
T Consensus 597 vT~p~~~~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v 658 (765)
T PRK15098 597 MSFPRSVGQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKL 658 (765)
T ss_pred cceeCCCCcCccccccCCCCCccccCcccccccceeccCCCccccccCCCCCccEEeeccEe
Confidence 99999999999643 24666 5999999999999999999863
|
|
| >PLN03080 Probable beta-xylosidase; Provisional | Back alignment and domain information |
|---|
| >PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 194 | ||||
| 1lq2_A | 602 | Crystal Structure Of Barley Beta-D-Glucan Glucohydr | 6e-59 | ||
| 1ex1_A | 605 | Beta-D-Glucan Exohydrolase From Barley Length = 605 | 6e-59 | ||
| 3usz_A | 822 | Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc | 2e-21 | ||
| 3rrx_A | 822 | Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet | 2e-21 | ||
| 3ac0_A | 845 | Crystal Structure Of Beta-Glucosidase From Kluyvero | 3e-06 | ||
| 4i3g_A | 829 | Crystal Structure Of Desr, A Beta-glucosidase From | 5e-06 | ||
| 3abz_A | 845 | Crystal Structure Of Se-Met Labeled Beta-Glucosidas | 3e-05 |
| >pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 | Back alignment and structure |
|
| >pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 | Back alignment and structure |
| >pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 | Back alignment and structure |
| >pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 | Back alignment and structure |
| >pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 | Back alignment and structure |
| >pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 | Back alignment and structure |
| >pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 194 | |||
| 1x38_A | 602 | Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai | 8e-71 | |
| 3rrx_A | 822 | EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( | 4e-55 | |
| 2x41_A | 721 | Beta-glucosidase; hydrolase, TIM barrel fold, fibr | 1e-23 | |
| 3abz_A | 845 | Beta-glucosidase I; glycoside hydrolase family3 be | 4e-21 | |
| 3bmx_A | 642 | Uncharacterized lipoprotein YBBD; beta-N-hexosamin | 8e-04 |
| >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 8e-71
Identities = 98/156 (62%), Positives = 126/156 (80%)
Query: 2 ATGTTILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTM 61
GTTIL A+++AVD ST VV+ +NPD++FVKS F YAIVAVGE PY ET GD++ LT+
Sbjct: 442 TVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTI 501
Query: 62 LDPDPSVITNVCEAVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDY 121
+P S + VC V+C ++ISGRP+V++P +++ DALVAAWLPG+EGQGVTD LFGD+
Sbjct: 502 PEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTDALFGDF 561
Query: 122 GFSGKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGL 157
GF+G+LPR+WFK+VDQLPMNVGD HYDPLF +GL
Sbjct: 562 GFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGL 597
|
| >3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 | Back alignment and structure |
|---|
| >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 | Back alignment and structure |
|---|
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 | Back alignment and structure |
|---|
| >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 194 | |||
| 3abz_A | 845 | Beta-glucosidase I; glycoside hydrolase family3 be | 100.0 | |
| 3zyz_A | 713 | Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 | 100.0 | |
| 3rrx_A | 822 | EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( | 100.0 | |
| 1x38_A | 602 | Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai | 100.0 | |
| 2x41_A | 721 | Beta-glucosidase; hydrolase, TIM barrel fold, fibr | 100.0 | |
| 3bmx_A | 642 | Uncharacterized lipoprotein YBBD; beta-N-hexosamin | 99.95 |
| >3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=344.58 Aligned_cols=138 Identities=28% Similarity=0.475 Sum_probs=127.3
Q ss_pred hhhcCCCCEEEEEecCCCcccccC-CCCCCCCCCChHHHHHHHhh-CCCEEEEEecCcceeccccccccceeEEccCCCc
Q 045895 31 FVKSNNFDYAIVAVGEAPYAETAG-DSMTLTMLDPDPSVITNVCE-AVKCVVIIISGRPIVIEPYISSVDALVAAWLPGT 108 (194)
Q Consensus 31 ~~~a~~aD~vIv~vg~~~~~e~~g-dr~~l~l~~~q~~li~~l~~-~~~vVvVl~~g~P~~l~~~~~~~~Ail~a~~pG~ 108 (194)
+++|++||+|||++|+++..|.|| ||.+|.||+.|++||++|++ ++|+|||+++|+|+.| +|.++++|||++|+||+
T Consensus 568 v~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~tVVVl~sG~pv~m-~w~~~v~AIL~aw~pGq 646 (845)
T 3abz_A 568 AELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEF-PWLEDANALVQAWYGGN 646 (845)
T ss_dssp HHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSCEEEEEECSSCCCC-TTGGGCSEEEECCCCCT
T ss_pred HHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCCEEEEEeCCCcccC-cchhccCeEEEcCCCcH
Confidence 355789999999999988777777 99999999999999999999 9999999999999999 78889999999999999
Q ss_pred h-HHHHHHHHcCCCCCCCCcceeecCCCCCCCccC-----------------CCCCC-----CccCCCcccCCCCccccc
Q 045895 109 E-GQGVTDVLFGDYGFSGKLPRSWFKTVDQLPMNV-----------------GDPHY-----DPLFPFDFGLKTESVPSI 165 (194)
Q Consensus 109 ~-g~AlAdvL~G~~nPsGkLPvT~p~~~~~~p~~~-----------------~~~~~-----~p~ypFG~GLsYt~f~~~ 165 (194)
+ |+||||||||++|||||||+|||++.+|+|.++ +|||| +|+||||||||||+|+|+
T Consensus 647 egG~AiAdVLfG~vNPSGkLP~T~p~~~~d~P~~~~~~~~~g~~~y~eg~~vgYR~y~~~~~~plfPFG~GLSYTtF~ys 726 (845)
T 3abz_A 647 ELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFELD 726 (845)
T ss_dssp THHHHHHHHHTTSSCCCCCCSSCBCSSGGGSTTTTSCSCBTTEEECTTTTCCTHHHHHHHTCCCSBCTTCCBCSSCEEEE
T ss_pred HHHHHHHHHhcCCcCCCCCCceeeeCchhhCCccccCCCCCCceeccCCccCCCcchhcCCCceeecccCCCcceeEEEe
Confidence 9 999999999999999999999999999999753 35666 599999999999999999
Q ss_pred --cccc
Q 045895 166 --VARS 169 (194)
Q Consensus 166 --~~~~ 169 (194)
+++.
T Consensus 727 ~~~l~v 732 (845)
T 3abz_A 727 ISDFKV 732 (845)
T ss_dssp EEEEEE
T ss_pred cccccc
Confidence 8864
|
| >3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* | Back alignment and structure |
|---|
| >3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A | Back alignment and structure |
|---|
| >1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* | Back alignment and structure |
|---|
| >2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* | Back alignment and structure |
|---|
| >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 194 | ||||
| d1x38a2 | 214 | c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, | 5e-39 |
| >d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Beta-D-glucan exohydrolase, C-terminal domain family: Beta-D-glucan exohydrolase, C-terminal domain domain: Beta-D-glucan exohydrolase, C-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Score = 130 bits (328), Expect = 5e-39
Identities = 98/157 (62%), Positives = 127/157 (80%)
Query: 5 TTILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDP 64
TTIL A+++AVD ST VV+ +NPD++FVKS F YAIVAVGE PY ET GD++ LT+ +P
Sbjct: 57 TTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEP 116
Query: 65 DPSVITNVCEAVKCVVIIISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDYGFS 124
S + VC V+C ++ISGRP+V++P +++ DALVAAWLPG+EGQGVTD LFGD+GF+
Sbjct: 117 GLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGFT 176
Query: 125 GKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGLKTES 161
G+LPR+WFK+VDQLPMNVGD HYDPLF +GL T +
Sbjct: 177 GRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTNA 213
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 194 | |||
| d1x38a2 | 214 | Beta-D-glucan exohydrolase, C-terminal domain {Bar | 100.0 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 81.9 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 81.68 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 80.34 |
| >d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Beta-D-glucan exohydrolase, C-terminal domain family: Beta-D-glucan exohydrolase, C-terminal domain domain: Beta-D-glucan exohydrolase, C-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=8.9e-45 Score=297.06 Aligned_cols=159 Identities=62% Similarity=1.170 Sum_probs=148.2
Q ss_pred CccCHHHHHHhhcCCCcEEEEecCCChhhhhcCCCCEEEEEecCCCcccccCCCCCCCCCCChHHHHHHHhhCCCEEEEE
Q 045895 3 TGTTILGAIRSAVDSSTEVVYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVKCVVII 82 (194)
Q Consensus 3 ~~~t~~~~l~~~~~~~~~v~~~~~~~~~~~~a~~aD~vIv~vg~~~~~e~~gdr~~l~l~~~q~~li~~l~~~~~vVvVl 82 (194)
...|+++++++...+...+.+...++.+..++..+|++|+++|+....+.++|+.++.++..|+++++++++++|+|||+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~viv~vG~~~~~~~~~~~~~~~~~~~q~~li~~~~~~~p~VvVl 134 (214)
T d1x38a2 55 VGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVL 134 (214)
T ss_dssp SCBCHHHHHHHHSCTTCEEEEESSCCHHHHHHTTCSCEEEEEECCCCCGGGGCCSSCCCCSSSHHHHHHHHTTSCEEEEE
T ss_pred ccccHHHHHhhhcccccceeeeccchhhhhhccccccceeeecccceeecccccccccCCccccceeeeeccCCceEEEe
Confidence 35789999999988777888888888777778889999999999887788889999999999999999998888999999
Q ss_pred ecCcceeccccccccceeEEccCCCchHHHHHHHHcCCCCCCCCcceeecCCCCCCCccCCCCCCCccCCCcccCCCCc
Q 045895 83 ISGRPIVIEPYISSVDALVAAWLPGTEGQGVTDVLFGDYGFSGKLPRSWFKTVDQLPMNVGDPHYDPLFPFDFGLKTES 161 (194)
Q Consensus 83 ~~g~P~~l~~~~~~~~Ail~a~~pG~~g~AlAdvL~G~~nPsGkLPvT~p~~~~~~p~~~~~~~~~p~ypFG~GLsYt~ 161 (194)
++++|+++++|.++++|||++|+||++|+|+||||||++|||||||+|||++++|+|.+++|++|+|+||||||||||.
T Consensus 135 ~~~~p~~~~~~~~~~~Ail~a~~pG~~G~AladvL~G~~nPSGKLP~T~p~~~~~~p~~~~~~~~~plypFG~GLSY~~ 213 (214)
T d1x38a2 135 ISGRPVVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTNA 213 (214)
T ss_dssp ECSSCCCCHHHHHHCSEEEEEECCCSBTHHHHHHHTTSSCCCCCCSSCBCSCGGGCSCCTTCSSCCCSBCTTCCBCCCC
T ss_pred ecCCceeeeccccccCeeEeeccccccchHHHHHhccCCCCCccCCccccCCcccCCCcCCCCCCCccccCCCCcCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|