Citrus Sinensis ID: 045896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MMNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQPLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYSTSHVLSKGNEKTSSHGEPVDVAASCKAPGEPQSVNSRGRPGSSASSNSDRAAAHQLLVVLDYLQARQWVLYLLKNQH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEEcccEEEEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccEEEccccEEEEEEEEccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEEccccccHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEcccEEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccEEEEcHccEEEEEEEEcccccccccccccccccccccccHHHccccccccEEcccccccccccccccccccccccccccccHHHHHHHHHcccEEccccccEEEEccccccHHHHHHHHHHHHHHHHccccccccEHHHcccEEcccccccHHHHcccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHcccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mmnlqqvmppkstangfgrrrgereggtrlesksqsgksnsgrvtttgsvigsksgscavsshDKLLYLASCLIGLSVEVQVKGGSVYAGIfhatsdekDFGVILKMARLIKDGNFRGQKTVAefvskppsknfiipssELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTrhveerelepwipdedvpqlpelenifddpwnskkwdqfetnetlfgvkttfneelyttkllrgpqtEELEKEAARIAREIAGEDTQDLHLAeergssihenlgideetrfssvyrgtgfddsgyeededivlnthnnetfgdssgsvdqISTDFAiakssdgaqlssssfivdeaqtsqsdgtgadlycseipsrnfstldsESRVQENLlgecggnndakdfvekqplpedaqlpksgdsqsspnrekagtikvgrsanatpystshvlskgnektsshgepvdvaasckapgepqsvnsrgrpgssassnsdRAAAHQLLVVLDYLQARQWVLYLLKNQH
Flexible Loop (DISEMBL)
mmnlqqvmppkstangfgrrrgereggtrlesksqsgksnsgrvtttgsvigsksgsCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAefvskppsknfiipssELVQVIAKDVAVTRDGFAnelqsdkqrelMIDSLISQTRHVEerelepwipdedvpqlPELENIFDDPWNSKKWDQFETNETlfgvkttfneelyttkllrgpqteELEKEAARIAREIAGEDTQDLHLAEErgssihenlgideetrfssVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQPLPEDaqlpksgdsqsspnrekagtikvgrsanatpystshvLSKGNEKTSSHGEPVDVAASCKAPgepqsvnsrgrpGSSASSNSDRAAAHQLLVVLDYLQARQWVLYLLKNQH
Low Complexity Region (SEG)
MMNLQQVMPPKSTANgfgrrrgereggtrLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLRGPQTeelekeaariareiageDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQPLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYSTSHVLSKGNEKTSSHGEPVDVAASCKAPGEPQSVnsrgrpgssassnsdraaaHQLLVVLDYLQARQWVLYLLKNQH
Disordered region (IsUnstruct)
*********************************************************CAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFAN*****************************WI******QLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLR**************************************************VYR**********************************************************************************************************************************************************************************************************AHQLLVVLDYLQARQWVLYLL****
Disordered Region (DISOPRED)
****************************************************************KLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKM***********************SKNFIIPSSELVQVIAKDVAVTRDGFA*******************************************************WDQFETNETLFGVKTTFNEELYTTK************************************SSIH*****DEETRFS*******************************************************************************************************************************************************************************************************************VVLDYLQARQWVLYLLKN**
Disordered Region (DISEMBL)
*********************************************TTGSVIGSKSGSCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAK********SSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQPLPEDA****************AGTIKVGRSANATP*********************DVAASC************************RAAAHQLLVVLDYLQARQWVLYLLKNQH
Disordered Region (DISPRO)
***********************************************************VSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD**************KPPSKNFIIPSSELVQVIAKDVAVTR***************************EERELEPWI*********ELENIFDD*WNSKKWDQFETNETLFGVKTTFNEELYTTKLLRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRG*****************************************************************************************************************************************************************************************************DRAAAHQLLVVLDYLQARQWVLYLLKNQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLRGPQxxxxxxxxxxxxxxxxxxxxxDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQPLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYSTSHVLSKGNEKTSSHGEPVDVAASCKAPGEPQSVNSRGRPGSSASSNSDRAAAHQLLVVLDYLQARQWVLYLLKNQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q55DE7	1103	Ataxin-2 homolog OS=Dicty	yes	no	0.407	0.192	0.378	4e-27
Q9USW1	791	Uncharacterized protein C	yes	no	0.238	0.156	0.448	2e-20
P53297	722	PAB1-binding protein 1 OS	yes	no	0.421	0.303	0.305	1e-16
Q29A33	1121	Ataxin-2 homolog OS=Droso	yes	no	0.286	0.132	0.295	8e-10
Q8SWR8	1084	Ataxin-2 homolog OS=Droso	yes	no	0.294	0.141	0.291	1e-09
O70305	1285	Ataxin-2 OS=Mus musculus	yes	no	0.384	0.155	0.268	1e-07
Q99700	1313	Ataxin-2 OS=Homo sapiens	yes	no	0.423	0.167	0.279	2e-07
Q7TQH0	1049	Ataxin-2-like protein OS=	no	no	0.482	0.239	0.257	1e-05
Q8WWM7	1075	Ataxin-2-like protein OS=	no	no	0.396	0.191	0.266	2e-05

>sp|Q55DE7|ATX2_DICDI Ataxin-2 homolog OS=Dictyostelium discoideum GN=atxn2 PE=3 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/243 (37%), Positives = 130/243 (53%), Gaps = 31/243 (12%)

Query: 64  DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKD-----FGVILKMARLIKDGNFRG 118
           ++ ++++  L+G +V V +K G VY GI H TS         +GV LKMAR  KD N R 
Sbjct: 83  ERTVFMSMSLVGQNVSVTLKNGDVYEGILHTTSTSTGSSGGGWGVALKMARK-KDTNNRV 141

Query: 119 QKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAV--TRDGFANELQSDKQRELMIDSLISQ 176
             T+       P    II + + +Q+ A  V +   RD F N    D+Q  +    L   
Sbjct: 142 ITTL-------PLPLVIIEAKDFLQITATGVVLDHYRDSFMNR---DQQSFITDTELSGF 191

Query: 177 TRHVEERELEPWIPDEDVPQLPELENIFDDPWNSK-----KWDQFETNETLFGVKTTFNE 231
             +++EREL PW PD  V      E++ D   NS+      WDQFETNE LFGV+TT+ E
Sbjct: 192 DGNLKERELTPWTPDPSV-----GESLDDFAANSEAKKPANWDQFETNEKLFGVRTTYEE 246

Query: 232 ELYTTKLLRGPQTEELEKEAA-RIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSS 290
           E+YTT+L R  +  ++ +  A + A+EI  E + ++HL EERG    E    DEE R+SS
Sbjct: 247 EIYTTRLDRDSEFYKINQSVAEKKAQEIENEKSGNIHLLEERG--FVEGADYDEEERYSS 304

Query: 291 VYR 293
           V R
Sbjct: 305 VVR 307

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USW1|YHZ3_SCHPO Uncharacterized protein C21B10.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21B10.03c PE=4 SV=1

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 87/136 (63%), Gaps = 12/136 (8%)

Query: 164 KQRELMIDSLISQTRHVE--ERELEPWIPDED---VPQLPELENIFDDPWNSKKWDQFET 218
           +QR    D  IS  +  E  +REL  W+PD +   VP L  LE   D+     +WDQF T
Sbjct: 97  QQRVWKTDVAISAEKRTETRQRELRRWMPDPEDAGVP-LAGLEESTDN----VEWDQFAT 151

Query: 219 NETLFGVKTTFNEELYTTKLLRG-PQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIH 277
           NE LFGVK+ F+E+LYT+++ R  P+ +E E+EA RIA+EI G  T ++H+AEERG  + 
Sbjct: 152 NEKLFGVKSHFDEDLYTSRIDRSHPKYKEKEQEADRIAKEIEGTVTNNIHIAEERGLKV- 210

Query: 278 ENLGIDEETRFSSVYR 293
           ++ G+DEE  +S V+R
Sbjct: 211 DDSGLDEEDLYSGVHR 226

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53297|PBP1_YEAST PAB1-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PBP1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 129/259 (49%), Gaps = 40/259 (15%)

Query: 64  DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFG--VILKMARLIKDGNFRGQKT 121
           D+  YL +  IG  V V V  G  Y G+  + + E   G  V+L+  R+   G       
Sbjct: 50  DRQDYLLANSIGSDVTVTVTSGVKYTGLLVSCNLESTNGIDVVLRFPRVADSGVSDSVDD 109

Query: 122 VAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRD-----GFANEL--------------QS 162
           +A+ + +      +I   ++ ++  K++ ++ D       A E               +S
Sbjct: 110 LAKTLGE----TLLIHGEDVAELELKNIDLSLDEKWENSKAQETTPARTNIEKERVNGES 165

Query: 163 DKQRELMIDSLISQT-RHVEERELEPWIPDE-----DVPQLPELENIFDDPWNSKKWDQF 216
           ++  +   D  IS + R ++ER+LE W P+E     D+ +   LE+      +S  WDQF
Sbjct: 166 NEVTKFRTDVDISGSGREIKERKLEKWTPEEGAEHFDINKGKALED------DSASWDQF 219

Query: 217 ETNETLFGVKTTFNEELYTTKLLR-GPQTEELEKEAARIAREIAGEDTQ-DLHLAEERGS 274
             NE  FGVK+TF+E LYTTK+ +  P   +  +EA RIA+EI  + T  ++H+AE+RG 
Sbjct: 220 AVNEKKFGVKSTFDEHLYTTKINKDDPNYSKRLQEAERIAKEIESQGTSGNIHIAEDRGI 279

Query: 275 SIHENLGIDEETRFSSVYR 293
            I ++ G+DEE  +S V R
Sbjct: 280 II-DDSGLDEEDLYSGVDR 297

Appears to promote proper polyadenylation. In the absence of PBP1, the 3'termini of pre-mRNAs are properly cleaved but lack full-length poly(A) tails. May act to repress the ability of PAB1 to negatively regulate polyadenylation. Negative regulator of poly(A) nuclease (PAN) activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q29A33|ATX2_DROPS Ataxin-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Atx2 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 37/186 (19%)

Query: 66  LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEF 125
            ++ A+ L+G  VEV ++ G++Y G+F   S   +F + L++   IK  N   +  V   
Sbjct: 72  FMHSATALVGSVVEVVLRSGNIYEGVFRTFSG--NFDIALELPACIKSKNLPEEGKVP-- 127

Query: 126 VSKPPSKNFIIPSSELVQVIAKDV---AVTRDGF-ANELQSDKQRELMIDSLISQTRHVE 181
                 K+ I P+  +V+++AKD      T   F  +E  SDK     +D          
Sbjct: 128 ------KHIIFPADTVVKIVAKDFDSQYATAGAFKTDEAISDKCNGARLD---------- 171

Query: 182 ERELEPWIP----DEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL--YT 235
           E+ELEPW      D D+    EL+   +  W++ +   F  NE  FGV +TF++ L  YT
Sbjct: 172 EKELEPWDSGANGDIDI----ELDGAANG-WDANEM--FRKNENTFGVTSTFDDSLATYT 224

Query: 236 TKLLRG 241
             L +G
Sbjct: 225 IPLDKG 230

Regulator of actin filament formation, though it does not directly assemble with actin filaments. Required for oocyte specification and oocyte positioning in the female germline. Also required for normal eye development and bristle morphology.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q8SWR8|ATX2_DROME Ataxin-2 homolog OS=Drosophila melanogaster GN=Atx2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 29/182 (15%)

Query: 66  LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEF 125
            ++ A+ L+G  VEV+++ G++Y G+F   S   +F + L++   IK  N   +  V   
Sbjct: 61  FMHSATALVGSVVEVRLRSGNIYEGVFRTFSG--NFDIALELPACIKSKNLPEEGKVP-- 116

Query: 126 VSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVEEREL 185
                 K+ I P+  +V ++AKD   ++   A   Q+D      I    +  R  +E+EL
Sbjct: 117 ------KHIIFPADTVVTIVAKDFD-SQYATAGAFQTDG----AISDKCNGAR-PDEKEL 164

Query: 186 EPWIP----DEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL--YTTKLL 239
           EPW      D D+    EL++  +  W+  +   F  NE  FGV +TF++ L  YT  L 
Sbjct: 165 EPWDSGANGDIDI----ELDSAANG-WDPNEM--FRKNENTFGVTSTFDDSLASYTVPLD 217

Query: 240 RG 241
           +G
Sbjct: 218 KG 219

Regulator of actin filament formation, though it does not directly assemble with actin filaments. Required for oocyte specification and oocyte positioning in the female germline. Also required for normal eye development and bristle morphology.

Drosophila melanogaster (taxid: 7227)

>sp|O70305|ATX2_MOUSE Ataxin-2 OS=Mus musculus GN=Atxn2 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 38/238 (15%)

Query: 65  KLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAE 124
           +++++ + ++G   EVQVK G +Y G+F   S + D  +     +  +  +   ++ + E
Sbjct: 237 RMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIME 296

Query: 125 FVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE--E 182
            V        +   S+ V V  KD   T   +A       +R+   DS +S   + E  E
Sbjct: 297 SV--------LFKCSDFVVVQFKD---TDSSYA-------RRDAFTDSALSAKVNGEHKE 338

Query: 183 RELEPW-----IPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL--YT 235
           ++LEPW        E++    ELEN   + W+    D F  NE  +GV +T++  L  YT
Sbjct: 339 KDLEPWDAGELTASEEL----ELENDVSNGWDPN--DMFRYNEENYGVVSTYDSSLSSYT 392

Query: 236 TKLLRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYR 293
             L R   +EE  K  AR A ++A E       A+ +     EN    EE ++++V R
Sbjct: 393 VPLERD-NSEEFLKREAR-ANQLAEEIESS---AQYKARVALENDDRSEEEKYTAVQR 445

Involved in EGFR trafficking, acting as negative regulator of endocytic EGFR internalization at the plasma membrane.

Mus musculus (taxid: 10090)

>sp|Q99700|ATX2_HUMAN Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 38/258 (14%)

Query: 65  KLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAE 124
           +++++ + ++G   EVQVK G +Y G+F   S + D  ++L  A      +  G K   E
Sbjct: 267 RMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCD--LVLDAAHEKSTESSSGPKR-EE 323

Query: 125 FVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE--E 182
            +     ++ +   S+ V V  KD+            S  +R+   DS IS   + E  E
Sbjct: 324 IM-----ESILFKCSDFVVVQFKDMD----------SSYAKRDAFTDSAISAKVNGEHKE 368

Query: 183 RELEPWIPDEDVP--QLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL--YTTKL 238
           ++LEPW   E     +L  LEN   + W+    D F  NE  +GV +T++  L  YT  L
Sbjct: 369 KDLEPWDAGELTANEELEALENDVSNGWDPN--DMFRYNEENYGVVSTYDSSLSSYTVPL 426

Query: 239 LRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFD 298
            R   +EE  K  AR A ++A E       A+ +     EN    EE ++++V R +   
Sbjct: 427 ERD-NSEEFLKREAR-ANQLAEEIESS---AQYKARVALENDDRSEEEKYTAVQRNS--- 478

Query: 299 DSGYEEDEDIVLNTHNNE 316
                E E   +NT  N+
Sbjct: 479 ----SEREGHSINTRENK 492

Involved in EGFR trafficking, acting as negative regulator of endocytic EGFR internalization at the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q7TQH0|ATX2L_MOUSE Ataxin-2-like protein OS=Mus musculus GN=Atxn2l PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 130/307 (42%), Gaps = 56/307 (18%)

Query: 12  STANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCA--------VSSH 63
           + A G G RRG     + L + +             GSV G  +G           V ++
Sbjct: 62  AAAAGSGLRRGAE---SILAASAPPQHQERPGAVAIGSVRGQTTGKGPPQSPVFEGVYNN 118

Query: 64  DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD-GNFRGQKTV 122
            ++L+  + ++G + +V+VK G+ Y GIF   S + +  V     +  +  G  R +  V
Sbjct: 119 SRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIV 178

Query: 123 AEFVSKPPSKNFIIPSSELVQVIAKDV---AVTRDGFANELQSDKQRELMIDSLISQTRH 179
              V KP         S+++ V  ++V     T+D F              DS I+    
Sbjct: 179 DTMVFKP---------SDVLLVHFRNVDFNYATKDKF-------------TDSAIAMNSK 216

Query: 180 V----EERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEEL-- 233
           V    +E+ L+ W   +      +LE+   + W+    + F+ NE  +GVKTT++  L  
Sbjct: 217 VNGEHKEKVLQRWEGGDSNSDDYDLESDMSNGWDPN--EMFKFNEENYGVKTTYDSSLSS 274

Query: 234 YTTKLLRGPQTEEL---EKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSS 290
           YT  L +   +EE    E  AA++AREI       L +A E       + G  EE + S+
Sbjct: 275 YTVPLEKD-NSEEFRQRELRAAQLAREIESSPQYRLRIAME------NDDGRTEEEKHSA 327

Query: 291 VYR-GTG 296
           V R G+G
Sbjct: 328 VQRQGSG 334

Mus musculus (taxid: 10090)

>sp|Q8WWM7|ATX2L_HUMAN Ataxin-2-like protein OS=Homo sapiens GN=ATXN2L PE=1 SV=2

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 45/251 (17%)

Query: 60  VSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD-GNFRG 118
           V ++ ++L+  + ++G + +V+VK G+ Y GIF   S + +  V     +  +  G  R 
Sbjct: 117 VYNNSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRR 176

Query: 119 QKTVAEFVSKPPSKNFIIPSSELVQVIAKDV---AVTRDGFANELQSDKQRELMIDSLIS 175
           +  V   V KP         S+++ V  ++V     T+D F              DS I+
Sbjct: 177 EDIVDTMVFKP---------SDVMLVHFRNVDFNYATKDKF-------------TDSAIA 214

Query: 176 QTRHV----EERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNE 231
               V    +E+ L+ W   +      +LE+   + W+    + F+ NE  +GVKTT++ 
Sbjct: 215 MNSKVNGEHKEKVLQRWEGGDSNSDDYDLESDMSNGWDPN--EMFKFNEENYGVKTTYDS 272

Query: 232 EL--YTTKLLRGPQTEEL---EKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEET 286
            L  YT  L +   +EE    E  AA++AREI       L +A E       + G  EE 
Sbjct: 273 SLSSYTVPLEKD-NSEEFRQRELRAAQLAREIESSPQYRLRIAME------NDDGRTEEE 325

Query: 287 RFSSVYR-GTG 296
           + S+V R G+G
Sbjct: 326 KHSAVQRQGSG 336

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
255560675	634	conserved hypothetical protein [Ricinus	0.923	0.757	0.584	1e-150
356547326	640	PREDICTED: uncharacterized protein LOC10	0.919	0.746	0.560	1e-143
356556956	639	PREDICTED: uncharacterized protein LOC10	0.911	0.741	0.562	1e-140
225442174	631	PREDICTED: uncharacterized protein LOC10	0.932	0.768	0.588	1e-139
449446911	632	PREDICTED: uncharacterized protein LOC10	0.911	0.75	0.522	1e-126
356519554	621	PREDICTED: uncharacterized protein LOC10	0.905	0.758	0.523	1e-124
356561291	624	PREDICTED: uncharacterized protein LOC10	0.901	0.751	0.521	1e-123
147772488	511	hypothetical protein VITISV_039722 [Viti	0.769	0.782	0.539	1e-117
357454537	613	Ataxin-2 [Medicago truncatula] gi|355486	0.823	0.698	0.528	1e-112
224054122	536	predicted protein [Populus trichocarpa]	0.732	0.710	0.588	1e-107

>gi|255560675|ref|XP_002521351.1| conserved hypothetical protein [Ricinus communis] gi|223539429|gb|EEF41019.1| conserved hypothetical protein [Ricinus communis]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 297/508 (58%), Positives = 360/508 (70%), Gaps = 28/508 (5%)

Query: 2   MNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVS 61
           M+LQQ   PKS ANGFGRRR EREGG RL++K QSGKSN  R  ++ S IG K G     
Sbjct: 1   MSLQQPTQPKSYANGFGRRRAEREGGARLDNKLQSGKSNPNR--SSSSAIGGKVGVYESP 58

Query: 62  SHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKT 121
           S D+L+YL++CLIG  VEV +K GS+Y+G  H T+ EK+F +ILKMARL KD  FRGQKT
Sbjct: 59  SRDRLVYLSTCLIGHPVEVHLKNGSIYSGTCHTTNVEKEFAIILKMARLTKD-VFRGQKT 117

Query: 122 VAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE 181
             E +SK PSK FIIP  E+VQVIAKDV++T DG  ++LQ +K +E+MIDS+ISQ+RHVE
Sbjct: 118 --ESLSKAPSKTFIIPGKEVVQVIAKDVSITMDGMTHDLQHEKHQEIMIDSIISQSRHVE 175

Query: 182 E-RELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLR 240
             REL PW+PDED PQ PELENIFD PWN + WDQFETNE LFGVK+TF+EELYTTKL +
Sbjct: 176 AGRELAPWVPDEDDPQCPELENIFDGPWN-RGWDQFETNELLFGVKSTFDEELYTTKLEK 234

Query: 241 GPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDS 300
           GPQ  ELEKEA R+AREI GE+TQDLHLAEERG+  HEN  IDEETRFSSVYRG   DDS
Sbjct: 235 GPQMRELEKEAMRMAREIEGEETQDLHLAEERGNHFHENFDIDEETRFSSVYRGMALDDS 294

Query: 301 GYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSDG 360
           GYEE EDI+L++ N ETFGD+  S  + S D    KS+DGA++ S        + SQS  
Sbjct: 295 GYEESEDILLDSRNAETFGDTPASFTKKSGDLTNGKSNDGARVLS--------KCSQSSA 346

Query: 361 TGADLY-----------CSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQPLPE 409
            G DLY            SE+PS++ ST ++E+R  ENL GE G ++  K+F+E+Q    
Sbjct: 347 -GVDLYHSGSYEHPRQLGSELPSKSLSTSETETRTHENLHGEHGASDCIKEFIEEQTRTG 405

Query: 410 DAQLPKSGDSQSSPNREKAGTIKVGRSANATPYS-TSHVLSKGNEKTSSHGEPVDVAASC 468
           DA LP   DSQSS + +K G+ K   S NAT Y+ +S+V SK NEKT S GE ++ A S 
Sbjct: 406 DAPLPTCEDSQSSLDGKKDGSDKGVLSPNATAYAPSSNVSSKSNEKTGSSGELLEAAPSV 465

Query: 469 KAPGEPQSVNSRGRPGSSASSNSDRAAA 496
           K  GE QS NSRGRPGSS SSNS+   A
Sbjct: 466 KGVGEVQSANSRGRPGSSTSSNSECVGA 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547326|ref|XP_003542065.1| PREDICTED: uncharacterized protein LOC100812754 [Glycine max]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/505 (56%), Positives = 357/505 (70%), Gaps = 27/505 (5%)

Query: 2   MNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVS 61
           MNLQQ   PKS+ NG+G R+ EREG T+ E+K  SGK N+ R+   G+V GSK GS    
Sbjct: 1   MNLQQAGQPKSS-NGYGHRKSEREGATKSENKILSGKLNANRLANAGAVTGSKGGSYESP 59

Query: 62  SHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKT 121
           SHD+L+Y+ +CLIG  VEVQVK GS+Y+GIFHAT+ +KDFG+ILKMARL KDG+ RGQK+
Sbjct: 60  SHDRLVYVTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMARLTKDGSLRGQKS 119

Query: 122 VAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE 181
             EFVSKPP K  IIP+ +LVQV A+DVA+TRDG ANE   D  +E+M+DSLISQ+RHV+
Sbjct: 120 GTEFVSKPPLKILIIPAKDLVQVTAQDVAITRDGLANESHHDMHQEIMVDSLISQSRHVD 179

Query: 182 -ERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLR 240
             REL+PW+PDE+ PQ PELENIFD  WN + WDQFETNE LFGVK+TFNEELYTTKL +
Sbjct: 180 LGRELKPWVPDEEDPQCPELENIFDGHWN-RGWDQFETNEALFGVKSTFNEELYTTKLEK 238

Query: 241 GPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDS 300
           GPQT ELEK+A RIAREI GE+TQDLHLAEERG  +HE   IDEETRFSSVYRG   DDS
Sbjct: 239 GPQTRELEKQALRIAREIEGEETQDLHLAEERGLHLHEAFDIDEETRFSSVYRGKHVDDS 298

Query: 301 GYEEDEDIVLNTHNNETFGDSS-----GSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQT 355
           G+  DEDI+ ++HN+ETFGD +     GSV +   + +  K +DGA+  ++S  +D  Q+
Sbjct: 299 GF--DEDILFDSHNSETFGDETFGGVFGSVVKRPGEISGGKGNDGARTLANSSSMDHTQS 356

Query: 356 SQSDGTGADL-----------YCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEK 404
            QS+ T  DL             SE+P++++ST D ESR+QENL     G+N      E+
Sbjct: 357 CQSN-TCVDLSRSGSYDHAKQLASELPAKSYSTSDGESRIQENLNSNQHGDNAITK--EE 413

Query: 405 QPL--PEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYS-TSHVLSKGNEKTSSHGEP 461
            P+   ED QL +S DSQ     +K G+ K   S NA+ Y+ +SH  SK +EK  SHG+ 
Sbjct: 414 NPIQAEEDVQLSRSEDSQGPLYSKKDGSDKGVLSPNASSYAPSSHTSSKTHEKMGSHGDL 473

Query: 462 VDVAASCKAPGEPQSVNSRGRPGSS 486
           ++ +AS KA GE +SVNSRG P  S
Sbjct: 474 IEGSASGKANGETKSVNSRGIPSGS 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556956|ref|XP_003546785.1| PREDICTED: uncharacterized protein LOC100782491 [Glycine max]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/498 (56%), Positives = 349/498 (70%), Gaps = 24/498 (4%)

Query: 2   MNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVS 61
           MNLQQ    KS+ NG+GRR+ EREG T+ E+K  SGK N+ R+   G+V GSK GS    
Sbjct: 1   MNLQQAGQSKSS-NGYGRRKSEREGATKSENKILSGKLNANRLANAGAVTGSKGGSYESP 59

Query: 62  SHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKT 121
           SHD+L+Y+ +CLIG  VEVQVK GS+Y+GIFHAT+ +KDFG+ILKMA L KDG+ RGQK+
Sbjct: 60  SHDRLVYVTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMACLTKDGSLRGQKS 119

Query: 122 VAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE 181
             EFVSKP SK  IIP+ +LVQV A+DVA+TRDG ANE   D  +E+M+DSLISQ+RHV+
Sbjct: 120 GTEFVSKPLSKILIIPAKDLVQVTAQDVAITRDGLANEYHHDMHQEIMVDSLISQSRHVD 179

Query: 182 -ERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLR 240
             REL+PW+PDED PQ PELENIFD  WN + WDQFETNE LFGVK+TFNE+LYTTKL +
Sbjct: 180 LGRELKPWVPDEDDPQCPELENIFDGHWN-RGWDQFETNEALFGVKSTFNEDLYTTKLEK 238

Query: 241 GPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDS 300
           GPQT ELE++A RIAREI GE+TQDLHLAEERG  +HE+  IDEETRFSSVYRG   DDS
Sbjct: 239 GPQTRELERQALRIAREIEGEETQDLHLAEERGLHLHEDFDIDEETRFSSVYRGKRVDDS 298

Query: 301 GYEEDEDIVLNTHNNETFGDSS-----GSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQT 355
           G+  DE ++ ++HN+ETFG  +     GSV +   + +  K +DGAQ  ++S  VD   +
Sbjct: 299 GF--DEGVLFDSHNSETFGGETFGGVFGSVVKRPGEISGGKGNDGAQTLANSSSVDHTLS 356

Query: 356 SQSDGTGADL-----------YCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEK 404
           SQS+ TG DL             SE+P++++ST D ESR+QEN      G+N      E 
Sbjct: 357 SQSN-TGVDLSRSGSSDHAKQLASELPAKSYSTSDGESRIQENSNSNQHGDNGITK-EEN 414

Query: 405 QPLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYS-TSHVLSKGNEKTSSHGEPVD 463
               ED QL KS DSQ      K G+ K   S NA+ Y+ +SH  SK +EK  SHG+ VD
Sbjct: 415 LIQAEDVQLSKSEDSQGPLYMNKDGSDKGVLSPNASSYAPSSHTSSKTHEKMGSHGDLVD 474

Query: 464 VAASCKAPGEPQSVNSRG 481
            +AS KA GE +SVNSRG
Sbjct: 475 GSASGKANGETKSVNSRG 492

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442174|ref|XP_002275748.1| PREDICTED: uncharacterized protein LOC100265239 [Vitis vinifera] gi|297743028|emb|CBI35895.3| unnamed protein product [Vitis vinifera]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 294/500 (58%), Positives = 355/500 (71%), Gaps = 15/500 (3%)

Query: 2   MNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVS 61
           MNLQQV  P+  ANGFGRRR   E G+R ++K QSGKSN  R+   G   G+K G    S
Sbjct: 1   MNLQQVAQPRPFANGFGRRR---EMGSRQDNKLQSGKSNPSRLPNAGVFTGTKGGGYESS 57

Query: 62  SHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKT 121
           S D+L+YL +C IGL VEVQVK GS+ +GIFHAT+ +KDFG++LKMARL KDG  RGQK 
Sbjct: 58  SRDRLVYLTTCFIGLPVEVQVKNGSIISGIFHATNADKDFGIVLKMARLTKDGPVRGQKA 117

Query: 122 VAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE 181
           +++ VSK PSK  IIP+ ELVQVIAKDV+VTRDGF+NELQ DK +++M+DS+ISQ+RH+E
Sbjct: 118 ISDSVSKAPSKILIIPAKELVQVIAKDVSVTRDGFSNELQQDKLQDIMLDSIISQSRHIE 177

Query: 182 -ERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLR 240
            ERELE W+PDED+PQ PELE  FD PW  + WDQFE N+ LFGV +TF+EE+YTTKL R
Sbjct: 178 MERELERWVPDEDIPQCPELEKTFDGPWK-RGWDQFEINKKLFGVNSTFDEEIYTTKLDR 236

Query: 241 GPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDS 300
           GPQT ELEKEA R+AREI GE+T DLHLAEERG  +H N  IDEE RFSSV R       
Sbjct: 237 GPQTRELEKEALRLAREIEGEETHDLHLAEERGLHLHANFDIDEEARFSSVLRRVDIS-- 294

Query: 301 GYEEDEDIVLNTHNNETFGDSSG-SVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSD 359
             E++ED +L++HN+ETFG SSG ++ +   D    KSSD AQ+SSSS  VDEAQ+SQS 
Sbjct: 295 --EDNEDGMLDSHNDETFGGSSGLAIGRHFADLTTGKSSDVAQVSSSSSSVDEAQSSQS- 351

Query: 360 GTGADLY--CSEIPSRNFSTLDSESRVQENLLGECG-GNNDAKDFVEKQPLPEDAQLPKS 416
           GTG DLY   S   +R+ + LDS+SRVQEN   E   GNN AK+FVEKQ L E+AQ  KS
Sbjct: 352 GTGLDLYHSGSHDHARHLA-LDSQSRVQENQFSEQQVGNNHAKEFVEKQTLAEEAQTSKS 410

Query: 417 GDSQSSPNREKAGTIKVGRSANATPYSTSHVLSKGNEKTSSHGEPVDVAASCKAPGEPQS 476
            D QS  + +K G+ K G S NAT Y+ SH  SK  E   S  E  +   S +  GE QS
Sbjct: 411 EDLQSLLDAKKDGSDKGGLSPNATAYAPSHGSSKSQENMGSPAEVSEGPVSARTMGETQS 470

Query: 477 VNSRGRPGSSASSNSDRAAA 496
           VNSRGRP SS SS SD   A
Sbjct: 471 VNSRGRPSSSTSSASDCVGA 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446911|ref|XP_004141214.1| PREDICTED: uncharacterized protein LOC101203478 [Cucumis sativus] gi|449511201|ref|XP_004163892.1| PREDICTED: uncharacterized protein LOC101227132 [Cucumis sativus]

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 267/511 (52%), Positives = 333/511 (65%), Gaps = 37/511 (7%)

Query: 2   MNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVS 61
           M+LQQ +  K +ANGFGRRRG+R+ GT+ E+K Q GKSN+ R+T T ++ GSK GS   S
Sbjct: 1   MSLQQSIHSKPSANGFGRRRGDRDVGTKFENKFQPGKSNTNRLTNTRTLAGSKDGSFGSS 60

Query: 62  SHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKT 121
           SHD+L+YL +C IG  V+VQVK GSVY+GIFH+++ +KDFG+ILKMARL KD + RGQKT
Sbjct: 61  SHDRLVYLTACFIGHHVDVQVKNGSVYSGIFHSSNTDKDFGIILKMARLTKDTSSRGQKT 120

Query: 122 VAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTR-HV 180
           + +   K PSK  +IP+ +LVQVIAKDV VT+DG +NE+ ++   EL+ID +ISQ+R H 
Sbjct: 121 IGDSSIKAPSKTLVIPAKDLVQVIAKDVTVTKDGLSNEVHNENN-ELLIDCIISQSRQHD 179

Query: 181 EERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLR 240
            EREL+PWIPD+D PQ PEL+NIFD PWN + WDQFE NE LFGVK+TF+EE+YTTKL R
Sbjct: 180 AERELKPWIPDDDDPQFPELDNIFDSPWN-RSWDQFEVNEKLFGVKSTFDEEIYTTKLDR 238

Query: 241 GPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDS 300
           GPQT ELEKEA+RIAREI GEDT+DLHLAEERG  IH+   IDEETRFSSV+RG   DDS
Sbjct: 239 GPQTRELEKEASRIAREIEGEDTEDLHLAEERGIDIHDKFDIDEETRFSSVFRGKAADDS 298

Query: 301 GYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDG----AQLSSSSFIVDEAQTS 356
           G++E+EDI  N+ N ETFG  S       TD   A +  G        SSS  +D+AQ S
Sbjct: 299 GFDENEDISFNSRNMETFGGPS------DTDIRFADTFSGKCSDVMSVSSSSSLDQAQPS 352

Query: 357 QSDGTGADL-----------YCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQ 405
           Q +  G DL             SE  S++ STL +ESR+Q+    E    NDA       
Sbjct: 353 QIN-IGVDLSRSTPINYARQLASETSSKSCSTLQTESRIQDIQHEE----NDAD------ 401

Query: 406 PLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYSTSHVLSKGNEKTSSHGEPVDVA 465
            +PE+       DSQ +   +     K G      P    H  SK NEK     E  D  
Sbjct: 402 -VPEEKDRQAVNDSQFAQCDDLQPLKKDGSDEGTMPNVALHTPSKHNEKLKP-SELSDDP 459

Query: 466 ASCKAPGEPQSVNSRGRPGSSASSNSDRAAA 496
            S K+ GE Q +NS GRPG S S NS+ AA 
Sbjct: 460 ESGKSHGEVQMLNSSGRPGCSVSLNSECAAG 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519554|ref|XP_003528437.1| PREDICTED: uncharacterized protein LOC100796073 [Glycine max]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/510 (52%), Positives = 342/510 (67%), Gaps = 39/510 (7%)

Query: 2   MNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSN-SGRVTTTGSVIGSKSGSCAV 60
           MNLQQV  PKS+ NG+G  + E+EG T+ ++K  SGKSN S R+  TG+    K GS   
Sbjct: 1   MNLQQVGQPKSS-NGYGCWKSEKEGATKSDNKIPSGKSNASSRLAMTGN----KGGSYGS 55

Query: 61  SSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQK 120
            SHD+L+YL +CLIG  VEVQVK GS+Y+GIFHAT+  KDFG+ILKMA L KD   +G++
Sbjct: 56  PSHDRLVYLKTCLIGQHVEVQVKNGSIYSGIFHATNSGKDFGIILKMAHLTKDAALQGKE 115

Query: 121 TVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHV 180
           +  EFVSK P K  IIP+++LVQVIAKDVAV+RDG  +E   D  +E+M+DS+ISQ+ HV
Sbjct: 116 SGVEFVSKAPFKTLIIPANDLVQVIAKDVAVSRDGLPSESHYDMHQEIMVDSVISQSCHV 175

Query: 181 EE-RELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLL 239
           E  REL+ W+PDED PQ PELENIFD PWN + WDQFETNE LFGVK+TFNE+ YTTKL 
Sbjct: 176 ETGRELQRWVPDEDDPQCPELENIFDGPWN-RGWDQFETNEMLFGVKSTFNEDFYTTKLE 234

Query: 240 RGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDD 299
           +GP+T ELEK+A RIAREI GE+TQDLHLAEERG  ++ N  IDEETRFSSVYRG G DD
Sbjct: 235 KGPKTRELEKQALRIAREIEGEETQDLHLAEERG--LYHNFDIDEETRFSSVYRGKGVDD 292

Query: 300 SGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSD 359
           S Y+E+ED +L++HN+ETF +    V++   +    K S+GAQ  S+   VD ++ SQS 
Sbjct: 293 SEYDENEDKLLDSHNSETFDNIYDLVNKRPVEARGQKGSNGAQTWSNFSSVDHSKLSQSS 352

Query: 360 GTGADL-----------YCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQPL- 407
            TG DL             SE+P+++ S  D +SR+Q+N +    G ND  + VE+  + 
Sbjct: 353 -TGVDLCRSGSNYHAKQLASELPAQSCSFSDGKSRIQQNSVNNLHGVND--NTVEENWIQ 409

Query: 408 PEDAQLPKSGDSQSSPNREKAGTIKVGRSAN-ATPYSTSHVLSKGNEKTSSHGEPVDVAA 466
            ED QL KS D QSS   +K G+ + G S N A+   ++H+LS   E+T S         
Sbjct: 410 TEDVQLSKSEDLQSSLKLKKDGSDEGGLSTNVASCAPSTHILSTTPEETGS--------- 460

Query: 467 SCKAPGEPQSVNSRGRPGSSASSNSDRAAA 496
                GE +SV S GR GS  S  SD  AA
Sbjct: 461 ----VGETRSVISHGRLGSFTSMGSDYVAA 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561291|ref|XP_003548916.1| PREDICTED: uncharacterized protein LOC100778053 [Glycine max]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/504 (52%), Positives = 339/504 (67%), Gaps = 35/504 (6%)

Query: 2   MNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSG-RVTTTGSVIGSKSGSCAV 60
           MNLQQ+  PKS+ NG+G ++ E+EG T+ ++K  S KSNS  R+  TG V G+K G    
Sbjct: 1   MNLQQIGQPKSS-NGYGHQKSEKEGATKSDNKLPSVKSNSSSRLAGTGVVTGNKGGGYGS 59

Query: 61  SSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQK 120
            SHD+L+YL +CLIG  VEVQVK GS+Y+GIFHAT+ +KDFG+ILKMARL K  + +GQ 
Sbjct: 60  PSHDRLVYLTTCLIGQHVEVQVKNGSIYSGIFHATNSDKDFGIILKMARLTKAASLQGQG 119

Query: 121 TVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHV 180
           +  EFVS+ PSK  IIP+++L QVIAKDVAV+RDG  +E   D   E+M+DS+ISQ+ HV
Sbjct: 120 SGVEFVSEAPSKTLIIPANDLAQVIAKDVAVSRDGLPSESHYDMHHEIMVDSVISQSCHV 179

Query: 181 EE-RELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLL 239
           E  REL+ W+PDED  Q PELENIFD PWN + WDQFETNE LFGVK+TFNE+ YTTKL 
Sbjct: 180 ETGRELQRWVPDEDDQQCPELENIFDGPWN-RGWDQFETNEMLFGVKSTFNEDFYTTKLE 238

Query: 240 RGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDD 299
            GPQT ELEK+A RIAREI GE+TQDLHLAEERG  ++ N  IDEETRFSSVYRG G DD
Sbjct: 239 IGPQTRELEKQALRIAREIEGEETQDLHLAEERG--LYHNFDIDEETRFSSVYRGKGVDD 296

Query: 300 SGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSD 359
           SGY+E+ED +L++HN+ETF +  G V++   + +  K S+GAQ  S+   V+ ++ SQS 
Sbjct: 297 SGYDENEDRLLDSHNSETFDNIYGLVNKSPGEASGRKGSNGAQTWSNFSSVNHSELSQSS 356

Query: 360 GTGADL-----------YCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDFVEKQPL- 407
            +G DL             SE+P+ + S  D ESR+Q N +    G ND  + VE+  + 
Sbjct: 357 -SGVDLCRSGSKDHAKQLSSELPALSCSFSDGESRIQLNSVNNLHGVND--NTVEENWIQ 413

Query: 408 PEDAQLPKSGDSQSSPNREKAGTIKVGRSAN-ATPYSTSHVLSKGNEKTSSHGEPVDVAA 466
            ED QL KS D QSS   +K G+ + G S N A    ++ +LSK  ++T S         
Sbjct: 414 AEDVQLLKSEDLQSSLKLKKDGSDEGGLSTNVALCAPSTRILSKTPKETGS--------- 464

Query: 467 SCKAPGEPQSVNSRGRPGSSASSN 490
                GE +SV SRGR G S  S+
Sbjct: 465 ----VGESKSVISRGRLGRSLGSD 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772488|emb|CAN65097.1| hypothetical protein VITISV_039722 [Vitis vinifera]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/458 (53%), Positives = 298/458 (65%), Gaps = 58/458 (12%)

Query: 2   MNLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGR----VTTTGSVIGSKSGS 57
           MNLQQV  P+  ANGFGRRR   E G+R ++K QSGKSN  R    V  TG   G+K G 
Sbjct: 1   MNLQQVAQPRPFANGFGRRR---EMGSRQDNKLQSGKSNPSRLPNAVIVTGVFTGTKGGG 57

Query: 58  CAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFR 117
              SS D+L+YL +C IGL VEVQVK GS+ +GIFHAT+ +KDFG++LKMARL KDG  R
Sbjct: 58  YESSSRDRLVYLTTCFIGLPVEVQVKNGSIISGIFHATNADKDFGIVLKMARLTKDGPVR 117

Query: 118 GQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQT 177
           GQK +++ VSK PSK  IIP+ ELVQVIAKDV+VTRDGF+NELQ DK +++M+DS+ISQ+
Sbjct: 118 GQKAISDSVSKAPSKILIIPAKELVQVIAKDVSVTRDGFSNELQQDKLQDIMLDSIISQS 177

Query: 178 RHVE-ERELEPWIPDEDVPQLPELENIFDDPWN--------------------------- 209
           RH+E ERELE W+PDED+PQ PELE  FD PW                            
Sbjct: 178 RHIEMERELERWVPDEDIPQCPELEKTFDGPWKRLLKLRTGWRQGCGAGVFYEWKEMIPF 237

Query: 210 -------SKKWDQFETNETLFGVKTTFNEELYTTKLLRGPQTEELEKEAARIAREIAGED 262
                     WDQFE N+ LFGV +TF+EE+YTTKL RGPQT ELEKEA R+AREI GE+
Sbjct: 238 GWFGGIGDWGWDQFEINKKLFGVNSTFDEEIYTTKLDRGPQTRELEKEALRLAREIEGEE 297

Query: 263 TQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSS 322
           T DLHLAEERG  +H N  IDEE RFSSV R         E++ED +L++HN+ETFG   
Sbjct: 298 THDLHLAEERGLHLHANFDIDEEARFSSVLRRVDIS----EDNEDGMLDSHNDETFGGC- 352

Query: 323 GSVDQISTDFAIAKSS-DGAQLSSSSFIVDEAQTSQSDGTGADLY--CSEIPSRNFSTLD 379
                 +    I KS  +   L       DEAQ+SQS GTG DLY   S   +R+ + LD
Sbjct: 353 -----FTVCLVIFKSPFELKTLGLQRMQKDEAQSSQS-GTGLDLYHSGSHDHARHLA-LD 405

Query: 380 SESRVQENLLGECG-GNNDAKDFVEKQPLPEDAQLPKS 416
           S+SRVQEN   E   GNN AK+FVEKQ L E+AQ  KS
Sbjct: 406 SQSRVQENQFSEQQVGNNHAKEFVEKQTLAEEAQTSKS 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454537|ref|XP_003597549.1| Ataxin-2 [Medicago truncatula] gi|355486597|gb|AES67800.1| Ataxin-2 [Medicago truncatula]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/452 (52%), Positives = 312/452 (69%), Gaps = 24/452 (5%)

Query: 61  SSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQK 120
           SSHD+L+Y+ +CLIG  VE+QVK GS+Y+GIFHAT  +KDFG+ILKMARL KD + +G+K
Sbjct: 36  SSHDRLVYVTTCLIGQQVEIQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDASSQGKK 95

Query: 121 TVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHV 180
           + AEFVSK PSK  IIP+ ELVQVIA+ VAVT+DG  +E Q  + +E+M+DSLISQ+ H 
Sbjct: 96  SGAEFVSKAPSKILIIPAKELVQVIAQGVAVTKDGLPSEPQHGRNQEIMVDSLISQSHHA 155

Query: 181 E-ERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLL 239
           E  RELEPW+PDED PQ PEL+NIFD  WN + WDQF TN+ LFGVK+TFNEELYTTKL 
Sbjct: 156 ELGRELEPWVPDEDDPQCPELDNIFDGHWN-RGWDQFATNKALFGVKSTFNEELYTTKLE 214

Query: 240 RGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTGFDD 299
           +GP+T ELE +A RI REI GE+TQDLHLAEERG  +     IDEETRFSSVYRG   DD
Sbjct: 215 KGPRTRELELQALRIEREIEGEETQDLHLAEERGLHLDGEFDIDEETRFSSVYRGKHVDD 274

Query: 300 SGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSSSSFIVDEAQTSQSD 359
           + YEE+ED+++++HN+E F    GSVD+ S +    + +D A   ++S  +D  Q+SQS+
Sbjct: 275 A-YEENEDMLMDSHNSEMFSGIFGSVDERSDEMNSGEGNDAAHALANSSFMDRPQSSQSN 333

Query: 360 GTGADL-----------YCSEIPSRNFSTLDSESRVQENL---LGECGGNNDAKDFVEKQ 405
            TG DL           + SEIPS+++S LD ESR+QEN    L    GN   ++ + +Q
Sbjct: 334 -TGVDLSRSSAYDHAKQFTSEIPSKSYSFLDGESRIQENPVHNLRGASGNTKEENLIVQQ 392

Query: 406 PLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYS-TSHVLSKGNEKTSSHGEPVDV 464
              ED QL K  DSQ+S   +K G+ K   S NA+ Y+ +SH+  K  EKT S G+  + 
Sbjct: 393 --GEDVQLSKYEDSQASLYFKKDGSDKGVLSPNASSYAPSSHISLKSREKTGSPGDSTEG 450

Query: 465 AASCKAPGEPQSVNSRGRPGSSASSNSDRAAA 496
            A  KA G  + ++SR   G+S+ S+S R  A
Sbjct: 451 LAYHKANGATKYIDSR---GASSGSDSVRGVA 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054122|ref|XP_002298103.1| predicted protein [Populus trichocarpa] gi|222845361|gb|EEE82908.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/403 (58%), Positives = 288/403 (71%), Gaps = 22/403 (5%)

Query: 107 MARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQR 166
           MARLIKD + RG K  AE VSK PSK  I+P  E+VQVIAKDV+VT DG +NELQ  KQ+
Sbjct: 1   MARLIKDVSLRGPK--AECVSKAPSKTLILPGKEVVQVIAKDVSVTIDGMSNELQQAKQQ 58

Query: 167 ELMIDSLISQTRHVE-ERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGV 225
           E+MIDS ISQ+R VE ERELEPW+PDED  Q PELENIFD  WN + WDQFETNE LFGV
Sbjct: 59  EIMIDSFISQSRLVETERELEPWVPDEDELQCPELENIFDGHWN-RGWDQFETNEMLFGV 117

Query: 226 KTTFNEELYTTKLLRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEE 285
           K+TF+EELYTTKL RGPQT+++E+EA RIAREI GE+T+DLHLAEERG  +HE+  +DEE
Sbjct: 118 KSTFDEELYTTKLERGPQTKDMEREALRIAREIEGEETRDLHLAEERGIHLHESFEVDEE 177

Query: 286 TRFSSVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGAQLSS 345
           TRFSSVYRG   DD G+EE +D+VL++ N+ETFG  S S  + S D   AKS+ G ++ S
Sbjct: 178 TRFSSVYRGGAIDDGGHEELDDVVLSSLNSETFGGPSASSIKKSADLTHAKSNVGTRVLS 237

Query: 346 SSFIVDEAQTSQSDGTGADLY-----------CSEIPSRNFSTLDSESRVQENLLGECGG 394
           +S + DE Q SQS  T ADL+            SE P+ + ST DSESR QE+   E G 
Sbjct: 238 TSSL-DEVQCSQS-STCADLHHPGSHDHAAKLASEPPT-SLSTSDSESRAQEDRHFEHGE 294

Query: 395 NNDAKDFVEKQPLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYS-TSHVLSKGNE 453
            +  K+ VE++ L EDAQL K  DS+S  ++ K  + K   S+N T Y+ +SHV SK N+
Sbjct: 295 LDSIKERVEEKMLTEDAQLSK--DSKSLDDK-KNESDKGRLSSNTTAYTPSSHVFSKNNK 351

Query: 454 KTSSHGEPVDVAASCKAPGEPQSVNSRGRPGSSASSNSDRAAA 496
           KTSS G+ +D  AS K   E Q VNSRGRPGSSASSNSDRA A
Sbjct: 352 KTSSPGQLLDGVASAKGAVEMQPVNSRGRPGSSASSNSDRAGA 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
TAIR|locus:2088222	595	CID4 "CTC-interacting domain 4	0.805	0.704	0.406	4.3e-77
TAIR|locus:2014330	587	CID3 "CTC-interacting domain 3	0.659	0.584	0.458	1.4e-69
DICTYBASE|DDB_G0269682	1103	atxn2 "ataxin-2" [Dictyosteliu	0.411	0.194	0.360	4.2e-22
POMBASE|SPBC21B10.03c	791	SPBC21B10.03c "ataxin-2 homolo	0.294	0.193	0.314	3e-13
ASPGD|ASPL0000056792	1027	AN1325 [Emericella nidulans (t	0.226	0.114	0.338	5.4e-12
CGD|CAL0005282	525	orf19.5459 [Candida albicans (	0.226	0.224	0.351	1.2e-11
UNIPROTKB|Q5A7K7	525	PBP1 "Putative uncharacterized	0.226	0.224	0.351	1.2e-11
SGD|S000003410	722	PBP1 "Component of glucose dep	0.25	0.180	0.343	3.3e-10
TAIR|locus:2160235	522	AT5G54920 "AT5G54920" [Arabido	0.201	0.201	0.324	3.1e-08
TAIR|locus:2116317	474	AT4G26990 "AT4G26990" [Arabido	0.165	0.181	0.384	2.6e-07

TAIR|locus:2088222 CID4 "CTC-interacting domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 177/435 (40%), Positives = 254/435 (58%)

Query:    43 RVTTTGSVIGSKSGSCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFG 102
             +  T+ +V   ++GS    S D+L+Y  +C IG  VEV ++ GSVY GIFHA + EKDFG
Sbjct:    26 KTNTSNTVFNGEAGSLKRLSLDRLVYFTTCKIGHHVEVHLRNGSVYTGIFHAANVEKDFG 85

Query:   103 VILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQS 162
             +ILKMA LIKDG  RG K+ +EFV KPPSK FIIP+ ELVQVIAKD++V+ +  +N +Q 
Sbjct:    86 IILKMACLIKDGTLRGHKSRSEFVRKPPSKTFIIPADELVQVIAKDLSVSSNNMSNAVQG 145

Query:   163 DKQRELMIDSLISQTRHVE-ERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNET 221
             +K  EL+ DS ISQ+ HV+ ER+L+ W+PDE +P   +LEN+FD+PWN +KW+QFE N++
Sbjct:   146 EKPSELLTDSSISQSYHVDRERQLQRWVPDETIPHGADLENVFDNPWN-RKWNQFEVNKS 204

Query:   222 LFGVKTTFNEELYTTKLLRGPQTXXXXXXXXXXXXXXXXXDTQDLHLAEERGSSIHENLG 281
             LFGVK+TF+E+LYTT+L RGPQT                  T+D+H+AEERG  ++EN  
Sbjct:   205 LFGVKSTFDEDLYTTRLERGPQTKQLEEHAQKIAREIEAETTRDIHVAEERGLQLNENFD 264

Query:   282 IDEETRFSSVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSSGSVDQISTDFAIAKSSDGA 341
              DEE R+SSV   TGF DSG++ +++ +L+T N+ TFG SS S  Q       A S  G 
Sbjct:   265 FDEEARYSSVRPVTGFGDSGFDLEDNALLDTCNDLTFGGSSTSDGQKP-----ASSGKGC 319

Query:   342 QLSSSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTLDSESRVQENLLGECGGNNDAKDF 401
             +    S    ++Q+S+ +    D  CS    ++     + S + E+ L E    N+ +  
Sbjct:   320 EELRVS---GDSQSSRKN-KNVDQSCSTSKQQSKDFPAAGSNISESQLDEQRRKNNEE-- 373

Query:   402 VEKQPLPEDAQLPKSGDSQSSPNREKAGTIKVGRSANATPYSTSHVLSKGNEKTSSHGEP 461
             V       +      GD +    +   G   V ++        S V SK  +  SS G+ 
Sbjct:   374 VSHNNRSAEESTSGHGDIKEGA-KSGGGASSVSKAVTEREREASQVSSK-TKSESSFGQS 431

Query:   462 VDVAASCKAPGEPQS 476
                ++  + PG   S
Sbjct:   432 ASRSSESR-PGPSTS 445

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009630 "gravitropism" evidence=RCA

TAIR|locus:2014330 CID3 "CTC-interacting domain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 165/360 (45%), Positives = 223/360 (61%)

Query:    40 NSGRVTTTGSVIGSKSGSCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEK 99
             N+ + +   +  G  + S    S   L+Y  +C IG  VEV +K GSVY+GIFHA + EK
Sbjct:    26 NNAQPSVDNTENGWDAESVDTPSQKLLVYFTTCNIGHQVEVHLKNGSVYSGIFHAANVEK 85

Query:   100 DFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANE 159
             DFG+ILKMA LI+D   RG K+    VSKP SK   IP+ ELVQVIAKD+ ++ D  ++ 
Sbjct:    86 DFGIILKMACLIRDS--RGTKS--RTVSKPSSKLLKIPADELVQVIAKDLPLSSDSVSDS 141

Query:   160 LQSDKQRELMIDSLISQTRHVE-ERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFET 218
             +Q +K  EL+ DSLISQ  +V+ EREL+PW+PDEDVP   +LEN+FDDPW  + W+QFE 
Sbjct:   142 VQCEKPLELLTDSLISQFYNVDLERELKPWVPDEDVPDCSDLENVFDDPWK-RGWNQFEV 200

Query:   219 NETLFGVKTTFNEELYTTKLLRGPQTXXXXXXXXXXXXXXXXXDTQDLHLAEERGSSIHE 278
             N+TLFGV +TF+EELYTTKL RGP T                 +T+D+H+AEERG  +  
Sbjct:   201 NKTLFGVTSTFDEELYTTKLERGPGTRELEEQALRIAREIVGENTRDIHVAEERGLQLSG 260

Query:   279 NLGIDEETRFSSVYRGTGFDDSGYEEDE----DIVLNTHNNETFGDSSGS--VDQISTDF 332
                IDEET++SSV     FDD+ YE+DE    DI+L+  NN TFGDSS S   +  ST  
Sbjct:   261 KFDIDEETKYSSVCATNRFDDTCYEDDEEEEEDILLDCCNNLTFGDSSASDGKEPASTGK 320

Query:   333 AIAKS-SDGAQLSSSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTLDSESRVQENLLGE 391
                 S  D   L S+  +VD++ ++ +  T   +  SE+PS++F    +  R  E+ LGE
Sbjct:   321 FYEDSWGDSLHLRSNK-MVDQSWSNSNKHTRQLM--SELPSKDFPVAGNNIR-NESQLGE 376

GO:0005634 "nucleus" evidence=ISM

DICTYBASE|DDB_G0269682 atxn2 "ataxin-2" [Dictyostelium discoideum (taxid:44689)]

 Score = 290 (107.1 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
 Identities = 87/241 (36%), Positives = 120/241 (49%)

Query:    64 DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKD-----FGVILKMARLIKDGNFRG 118
             ++ ++++  L+G +V V +K G VY GI H TS         +GV LKMAR  KD N R 
Sbjct:    83 ERTVFMSMSLVGQNVSVTLKNGDVYEGILHTTSTSTGSSGGGWGVALKMARK-KDTNNRV 141

Query:   119 QKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVT--RDGFANELQSDKQRELMIDSLISQ 176
               T+       P    II + + +Q+ A  V +   RD F N    D+Q  +    L   
Sbjct:   142 ITTL-------PLPLVIIEAKDFLQITATGVVLDHYRDSFMNR---DQQSFITDTELSGF 191

Query:   177 TRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKK---WDQFETNETLFGVKTTFNEEL 233
               +++EREL PW PD   P + E  + F     +KK   WDQFETNE LFGV+TT+ EE+
Sbjct:   192 DGNLKERELTPWTPD---PSVGESLDDFAANSEAKKPANWDQFETNEKLFGVRTTYEEEI 248

Query:   234 YTTKLLRGPQTXXXXXXXXXXXXXXXXXDTQ-DLHLAEERGSSIHENLGIDEETRFSSVY 292
             YTT+L R  +                  +   ++HL EERG    E    DEE R+SSV 
Sbjct:   249 YTTRLDRDSEFYKINQSVAEKKAQEIENEKSGNIHLLEERG--FVEGADYDEEERYSSVV 306

Query:   293 R 293
             R
Sbjct:   307 R 307

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC21B10.03c SPBC21B10.03c "ataxin-2 homolog (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 204 (76.9 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 50/159 (31%), Positives = 86/159 (54%)

Query:   138 SSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVE--ERELEPWIPDEDVP 195
             SS +  + + +  V+    + +  + +QR    D  IS  +  E  +REL  W+PD +  
Sbjct:    71 SSNVTSLASSEENVSSVSGSAKSNNSQQRVWKTDVAISAEKRTETRQRELRRWMPDPEDA 130

Query:   196 QLPELENIFDDPWNSKKWDQFETNETLFGVKTTFNEELYTTKLLRG-PQTXXXXXXXXXX 254
              +P L  + ++  ++ +WDQF TNE LFGVK+ F+E+LYT+++ R  P+           
Sbjct:   131 GVP-LAGL-EESTDNVEWDQFATNEKLFGVKSHFDEDLYTSRIDRSHPKYKEKEQEADRI 188

Query:   255 XXXXXXXDTQDLHLAEERGSSIHENLGIDEETRFSSVYR 293
                     T ++H+AEERG  + ++ G+DEE  +S V+R
Sbjct:   189 AKEIEGTVTNNIHIAEERGLKVDDS-GLDEEDLYSGVHR 226

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006378 "mRNA polyadenylation" evidence=ISO

GO:0032153 "cell division site" evidence=IDA

GO:2000765 "regulation of cytoplasmic translation" evidence=ISO

ASPGD|ASPL0000056792 AN1325 [Emericella nidulans (taxid:162425)]

 Score = 157 (60.3 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
 Identities = 42/124 (33%), Positives = 60/124 (48%)

Query:   171 DSLISQTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVKTTFN 230
             D+ IS    + ER L+ W P  D      LE+        K+WDQFETN  LFG  ++++
Sbjct:   193 DADISGNLAIRERALKRWEPGADASTDLSLESTSTA---LKQWDQFETNARLFGATSSYD 249

Query:   231 EELYTTKLLRG-PQTXXXXXXXXXXXXXXXXXDTQDLHLAEERGSSIHENLGIDEETRFS 289
             E++YTT++ R  P                   DT + H+ EERG    +  G DEE ++S
Sbjct:   250 EDMYTTRIDRSDPTYKRKEAEAARIAREIENSDTDNAHVREERGLQAPD-AG-DEEDKYS 307

Query:   290 SVYR 293
              V R
Sbjct:   308 GVRR 311

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0005282 orf19.5459 [Candida albicans (taxid:5476)]

 Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 45/128 (35%), Positives = 69/128 (53%)

Query:   167 ELMIDSLISQTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVK 226
             E   D+ IS    ++ERELE W+PD++V    EL  + DD     +WDQF+ N+  FGV+
Sbjct:   110 EFKTDADISGKMQIKERELERWVPDDEV----EL-TLEDD---GSEWDQFKVNQEKFGVE 161

Query:   227 TTFNEELYTTKL-LRGPQTXXXXXXXXXXXXXXXXXDTQDLHLAEERGSSIHENLGIDEE 285
             ++++E LYTT++    P                    T D H+ EERG  + ++ G+DEE
Sbjct:   162 SSYDEHLYTTRIDTSAPDYHERVAKAERIAKEIEQQATTDRHILEERGVVVDDS-GVDEE 220

Query:   286 TRFSSVYR 293
              ++S V R
Sbjct:   221 DKYSGVDR 228

GO:0003674 "molecular_function" evidence=ND

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0034063 "stress granule assembly" evidence=IEA

GO:0045727 "positive regulation of translation" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

UNIPROTKB|Q5A7K7 PBP1 "Putative uncharacterized protein PBP1" [Candida albicans SC5314 (taxid:237561)]

 Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 45/128 (35%), Positives = 69/128 (53%)

Query:   167 ELMIDSLISQTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVK 226
             E   D+ IS    ++ERELE W+PD++V    EL  + DD     +WDQF+ N+  FGV+
Sbjct:   110 EFKTDADISGKMQIKERELERWVPDDEV----EL-TLEDD---GSEWDQFKVNQEKFGVE 161

Query:   227 TTFNEELYTTKL-LRGPQTXXXXXXXXXXXXXXXXXDTQDLHLAEERGSSIHENLGIDEE 285
             ++++E LYTT++    P                    T D H+ EERG  + ++ G+DEE
Sbjct:   162 SSYDEHLYTTRIDTSAPDYHERVAKAERIAKEIEQQATTDRHILEERGVVVDDS-GVDEE 220

Query:   286 TRFSSVYR 293
              ++S V R
Sbjct:   221 DKYSGVDR 228

GO:0003674 "molecular_function" evidence=ND

SGD|S000003410 PBP1 "Component of glucose deprivation induced stress granules" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 178 (67.7 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 47/137 (34%), Positives = 70/137 (51%)

Query:   161 QSDKQRELMIDSLISQT-RHVEERELEPWIPDEDVPQLP-ELENIFDDPWNSKKWDQFET 218
             +S++  +   D  IS + R ++ER+LE W P+E             +D  +S  WDQF  
Sbjct:   164 ESNEVTKFRTDVDISGSGREIKERKLEKWTPEEGAEHFDINKGKALED--DSASWDQFAV 221

Query:   219 NETLFGVKTTFNEELYTTKLLRG-PQTXXXXXXXXXXXXXXXXXDTQ-DLHLAEERGSSI 276
             NE  FGVK+TF+E LYTTK+ +  P                    T  ++H+AE+RG  I
Sbjct:   222 NEKKFGVKSTFDEHLYTTKINKDDPNYSKRLQEAERIAKEIESQGTSGNIHIAEDRGIII 281

Query:   277 HENLGIDEETRFSSVYR 293
              ++ G+DEE  +S V R
Sbjct:   282 DDS-GLDEEDLYSGVDR 297

GO:0045727 "positive regulation of translation" evidence=IMP;IPI

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0006378 "mRNA polyadenylation" evidence=IGI;IMP;IPI

GO:0034063 "stress granule assembly" evidence=IMP

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0005844 "polysome" evidence=IDA

TAIR|locus:2160235 AT5G54920 "AT5G54920" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 36/111 (32%), Positives = 63/111 (56%)

Query:    53 SKSGSCAVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIK 112
             S   S + S ++ LL    C+IGL V V +  GSV++GIF+  S E +F ++LK A+L K
Sbjct:    14 SSPSSSSSSLNEALLISTMCIIGLQVHVHINDGSVFSGIFYTVSLENEFSIVLKNAKLTK 73

Query:   113 DGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSD 163
              G  +      + V     +  +I SS +VQ++A+ V+++ +  A E++ +
Sbjct:    74 KGRSKSNVESGKIV-----ETLVILSSNIVQIVAEGVSLSSN-VAGEIEGE 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2116317 AT4G26990 "AT4G26990" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 35/91 (38%), Positives = 52/91 (57%)

Query:    61 SSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQK 120
             SS   L+    C+IGL V V VK GSV++GIF   S +  FG++LK AR+ K G      
Sbjct:    18 SSSSVLIAATMCIIGLQVHVHVKDGSVFSGIFFTASVDNGFGIVLKDARITKKGT----- 72

Query:   121 TVAEFVSKPPSKNFIIPSSELVQVIAKDVAV 151
             +++   S       +I SS +VQ+IA+ V++
Sbjct:    73 SISNVASGSVVDTLVILSSTIVQIIAEGVSL 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	520
pfam14438	113	pfam14438, SM-ATX, SM domain found in Ataxin-2	8e-30
COG5180	654	COG5180, PBP1, Protein interacting with poly(A)-bi	3e-22
pfam06741	72	pfam06741, LsmAD, LsmAD domain	2e-20

>gnl|CDD|222754 pfam14438, SM-ATX, SM domain found in Ataxin-2

 Score =  112 bits (282), Expect = 8e-30
 Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 11/124 (8%)

Query: 64  DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVA 123
           D+L+YL + LIG  VEV +K GSVY GIFH  S E DFGV+LKMAR++   +  G     
Sbjct: 1   DRLVYLLTNLIGQRVEVTLKNGSVYEGIFHTASPEDDFGVVLKMARVLPKSDASGPL--- 57

Query: 124 EFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRHVEER 183
                      IIPS ++VQ+ AKDV       +       +     D+ IS      ER
Sbjct: 58  ---RGKIVDTLIIPSKDIVQIEAKDV-----DLSYAASGGAKDGFRTDTAISGNGGGRER 109

Query: 184 ELEP 187
           EL+P
Sbjct: 110 ELQP 113

SM domain found in Ataxin-2. Length = 113

>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein [RNA processing and modification]

 Score =  100 bits (249), Expect = 3e-22
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 5/132 (3%)

Query: 164 KQRELMIDSLIS-QTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETL 222
             R    D  IS   R ++ER+L PW P      L +     ++  + K WDQF  NE L
Sbjct: 103 GWRVFRTDVEISGGPREIKERKLMPWAPLPKAADLEKSGKALEE--DCKDWDQFAANEKL 160

Query: 223 FGVKTTFNEELYTTKLLRG-PQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLG 281
           FGVK+ F+EELYT  + +  P  +   +EA RIA+EI    T ++H+AEERG    ++ G
Sbjct: 161 FGVKSRFDEELYTEVIDKSSPSYKSKVQEARRIAKEIELSATTNIHIAEERGLGNDDS-G 219

Query: 282 IDEETRFSSVYR 293
           +DEE  +S V R
Sbjct: 220 LDEEDLYSGVVR 231

Length = 654

>gnl|CDD|219155 pfam06741, LsmAD, LsmAD domain

 Score = 85.1 bits (211), Expect = 2e-20
 Identities = 38/72 (52%), Positives = 52/72 (72%), Gaps = 2/72 (2%)

Query: 223 FGVKTTFNEELYTTKLLRG-PQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLG 281
           FGVK+TF+EELYTT+L +  P  +E E  A RIAREI G  T ++H+AEERG  + ++ G
Sbjct: 1   FGVKSTFDEELYTTRLDKSNPIYKEREARAERIAREIEGSATGNIHIAEERGDLVDDS-G 59

Query: 282 IDEETRFSSVYR 293
           +DEE ++S V R
Sbjct: 60  VDEEDKYSGVVR 71

This domain is found associated with Lsm domain. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
COG5180	654	PBP1 Protein interacting with poly(A)-binding prot	100.0
KOG2375	756	consensus Protein interacting with poly(A)-binding	99.96
PF06741	72	LsmAD: LsmAD domain; InterPro: IPR009604 This entr	99.95
PF14438	77	SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.	99.81
KOG2375	756	consensus Protein interacting with poly(A)-binding	98.36
cd01733	78	LSm10 The eukaryotic Sm and Sm-like (LSm) proteins	97.49
cd01724	90	Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins	97.48
cd01725	81	LSm2 The eukaryotic Sm and Sm-like (LSm) proteins	97.31
cd01726	67	LSm6 The eukaryotic Sm and Sm-like (LSm) proteins	97.28
cd01721	70	Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins	97.23
cd00600	63	Sm_like The eukaryotic Sm and Sm-like (LSm) protei	97.14
cd01731	68	archaeal_Sm1 The archaeal sm1 proteins: The Sm pro	97.05
PRK00737	72	small nuclear ribonucleoprotein; Provisional	97.04
cd06168	75	LSm9 The eukaryotic Sm and Sm-like (LSm) proteins	97.0
cd01722	68	Sm_F The eukaryotic Sm and Sm-like (LSm) proteins	97.0
smart00651	67	Sm snRNP Sm proteins. small nuclear ribonucleoprot	96.97
cd01723	76	LSm4 The eukaryotic Sm and Sm-like (LSm) proteins	96.92
PF01423	67	LSM: LSM domain ; InterPro: IPR001163 This family	96.79
PF12701	96	LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC	96.69
cd01717	79	Sm_B The eukaryotic Sm and Sm-like (LSm) proteins	96.43
cd01719	72	Sm_G The eukaryotic Sm and Sm-like (LSm) proteins	96.31
cd01736	74	LSm14_N LSm14 (also known as RAP55) belongs to a f	96.27
COG1958	79	LSM1 Small nuclear ribonucleoprotein (snRNP) homol	96.2
KOG1073	361	consensus Uncharacterized mRNA-associated protein	95.38
cd01727	74	LSm8 The eukaryotic Sm and Sm-like (LSm) proteins	95.11
cd01729	81	LSm7 The eukaryotic Sm and Sm-like (LSm) proteins	95.0
cd01732	76	LSm5 The eukaryotic Sm and Sm-like (LSm) proteins	94.88
PF11095	80	Gemin7: Gem-associated protein 7 (Gemin7); InterPr	94.75
cd01730	82	LSm3 The eukaryotic Sm and Sm-like (LSm) proteins	94.59
cd01728	74	LSm1 The eukaryotic Sm and Sm-like (LSm) proteins	94.49
cd01720	87	Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins	91.67
KOG1783	77	consensus Small nuclear ribonucleoprotein F [RNA p	87.99
KOG3293	134	consensus Small nuclear ribonucleoprotein (snRNP)	85.08
KOG3428	109	consensus Small nuclear ribonucleoprotein SMD1 and	84.18
KOG3448	96	consensus Predicted snRNP core protein [RNA proces	83.68
KOG3482	79	consensus Small nuclear ribonucleoprotein (snRNP)	82.29
PF10842	66	DUF2642: Protein of unknown function (DUF2642); In	81.64

>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]

Probab=100.00  E-value=1e-36  Score=317.85  Aligned_cols=188  Identities=33%  Similarity=0.492  Sum_probs=137.7

Q ss_pred             CceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEEccccccc-
Q 045896           75 GLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTR-  153 (520)
Q Consensus        75 G~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~AkdV~ls~-  153 (520)
                      |..|-+.+.||      +..++.+. +.||+..+|++-.+                   +.|...||+.++- +..|.. 
T Consensus        34 GS~I~~~~Tn~------~~~~nlEs-i~vv~~nprV~~~g-------------------Vs~s~sD~~t~~~-~~sl~~~   86 (654)
T COG5180          34 GSIIGAFLTNE------DGKVNLES-IDVVETNPRVVFPG-------------------VSISESDIITVTK-MNSLQAE   86 (654)
T ss_pred             cceeeeeeecC------Cccceeee-eeeeecCCccccCc-------------------cccccchhhhhhc-cchhhhh
Confidence            88888888887      33344543 56888888765542                   2333344443321 111110 


Q ss_pred             -CCcc-----cccchhhhhccccceeccCCc-ccccccccccCCCCCCCCc----cccccccCCCCCCcccchhHhhhhh
Q 045896          154 -DGFA-----NELQSDKQRELMIDSLISQTR-HVEERELEPWIPDEDVPQL----PELENIFDDPWNSKKWDQFETNETL  222 (520)
Q Consensus       154 -D~~~-----~~~~~~~~~~FkTDTeIS~~~-~~~ERELq~W~pd~dd~~~----~sLE~~~d~~~~~~~WDQFeaNEkl  222 (520)
                       ....     .........-|+||.+||+.. ..+||+|.+|.|++.+..+    ..||+      +.+.||||++||+|
T Consensus        87 ~en~~s~~gsa~~n~s~~rvfrTDv~ISg~~rE~keR~l~~w~p~p~aa~~~~~G~~le~------d~~~WdQFa~NeKl  160 (654)
T COG5180          87 KENDASERGSAAKNDSGWRVFRTDVEISGGPREIKERKLMPWAPLPKAADLEKSGKALEE------DCKDWDQFAANEKL  160 (654)
T ss_pred             hccccccccccccccccceeeeecceecCCcchhhhhhhcccCCCccccCCccccchhhc------ccchHHHhhhhhhh
Confidence             0000     001112345699999999864 3559999999998765443    12443      23489999999999


Q ss_pred             cCccccCCCCceeeeccCC-CchHHHHHHHHHHHHHHhcCCCcchhhhhhcCCcccCCCCCChhhcccccccCCC
Q 045896          223 FGVKTTFNEELYTTKLLRG-PQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRGTG  296 (520)
Q Consensus       223 FGVkSTFDE~LYTTkLDrs-p~ykereaeAeRIArEIE~s~t~n~HiaEERG~~~~~d~~~DEEdkYSaV~R~~~  296 (520)
                      |||||+|||+|||++|||+ |.|++++.+|+|||+|||.+.|.|+|||||||+.+ +|++.||||+||+|+|..+
T Consensus       161 FgVkS~FDE~lYt~~idks~p~Yk~k~qeA~RIaKEIe~s~TtniHiaEeRGl~~-DDSGldeEDlYSgV~R~~d  234 (654)
T COG5180         161 FGVKSRFDEELYTEVIDKSSPSYKSKVQEARRIAKEIELSATTNIHIAEERGLGN-DDSGLDEEDLYSGVVRRGD  234 (654)
T ss_pred             cCccccccHHHHhhhhccCChhhHHHHHHHHHHHHHHhhccccchhhhhhcCccc-cccCcchhhhhhhhhhhHH
Confidence            9999999999999999997 89999999999999999999999999999999976 4789999999999999643

>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]

Probab=99.96  E-value=5.7e-29  Score=273.36  Aligned_cols=316  Identities=29%  Similarity=0.326  Sum_probs=221.7

Q ss_pred             CccccCCCCCCCCCCCcccccccCCCcccCcccCCCCCCCCccccccccCCCCCcccCccchhHHHHHHhccCceEEEEE
Q 045896            3 NLQQVMPPKSTANGFGRRRGEREGGTRLESKSQSGKSNSGRVTTTGSVIGSKSGSCAVSSHDKLLYLASCLIGLSVEVQV   82 (520)
Q Consensus         3 ~~q~~~~~~~~~ng~~~rr~~r~~~~~~~nk~~~~~s~~~r~~~~~~~~g~~~g~~~s~~~dRLlyl~t~LIG~~VeVtv   82 (520)
                      .+.++-++..+.|++.+||..|.++.+..--.+..+   ..+-.+..  .      .++..++|+|+++|.||..|.|+|
T Consensus         7 ~mk~~f~~~~ssn~~~~rr~~~~~~~~~~~p~~~~t---~~p~~~~s--~------~~~~~~~~~~~~~~s~g~~~~~~l   75 (756)
T KOG2375|consen    7 RMKPNFQPAASSNKLPGRRFSSGVGANGGKPAQSAT---PDPPNAES--I------ENPSRDSLAYKATDSIGPSVAVLL   75 (756)
T ss_pred             cccccCCcccCCCCCccccccccccccCCCcccccC---CCCCCCCC--C------CCcchhhhhhhhcCCCCcccceec
Confidence            457788899999999999998887775443333333   22221111  1      667789999999999999999999


Q ss_pred             ecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCC---cEEEEEcccccccCCcccc
Q 045896           83 KGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSE---LVQVIAKDVAVTRDGFANE  159 (520)
Q Consensus        83 kdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kD---IVqV~AkdV~ls~D~~~~~  159 (520)
                      .+|..|.|||+.+++...++|+|.++-........+...+. ....  ..++.|+..|   |+++.++.-..-.+....+
T Consensus        76 ~ng~~~~gi~~s~N~~~~~gi~~~a~~~~~~~g~r~~~~r~-~~~~--~~~~~i~~~~~~eL~~~~~~~~~k~~~s~~~g  152 (756)
T KOG2375|consen   76 GNGSSYSGILVSNNPEQTVGIILVAADAKRRSGTRGSESRD-WMPD--PPTAGIPLEDELELTTSNAEQDEKATNSKSDG  152 (756)
T ss_pred             cCCCCCcceeeecchhhcccccccccccccccccccccccc-cccC--CCcccCccccccchhhcccccchhhhcchhhc
Confidence            99999999999999998899999988765442122222222 1222  2566666555   3344333222211111111


Q ss_pred             cch-----hhhhccccceeccCC--cccccccccccCCCCCCCCccccccccCCCCCCcccchhHhh---hhhcCccccC
Q 045896          160 LQS-----DKQRELMIDSLISQT--RHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETN---ETLFGVKTTF  229 (520)
Q Consensus       160 ~~~-----~~~~~FkTDTeIS~~--~~~~ERELq~W~pd~dd~~~~sLE~~~d~~~~~~~WDQFeaN---EklFGVkSTF  229 (520)
                      .+.     .....|+||..+...  ....|| |.+|.+++....+.-++.-....++. +||||++|   .++|||.+||
T Consensus       153 v~~e~~~~~a~Ss~it~~~~~~~~~ee~~e~-l~p~~~~e~v~~~~~~~~~rl~~~~k-Gw~Qf~v~f~~~~~f~v~stF  230 (756)
T KOG2375|consen  153 VQSEKPDEAAYSSFITDSEGKGDEGEEEAER-LAPWIEDEVVPGGGIAEERRLENDNK-GWDQFEVNFHGSKKFNVMSTF  230 (756)
T ss_pred             cccccccccccccccccccccccccccchhh-cCCCCcccccccccchhhcccccccC-CCCccchhhhhhhhhceeeee
Confidence            111     234568888887775  112234 55999988766665555444444554 99999999   9999999999


Q ss_pred             CCCceeeeccCCCchHHHHHHHHHHHHHHhcCCCcchhhhhhcCCcccCCCCCChhhcccccccC-CCCCCCCCC-CCCc
Q 045896          230 NEELYTTKLLRGPQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRG-TGFDDSGYE-EDED  307 (520)
Q Consensus       230 DE~LYTTkLDrsp~ykereaeAeRIArEIE~s~t~n~HiaEERG~~~~~d~~~DEEdkYSaV~R~-~~~~~sg~~-~~~~  307 (520)
                      ||+||||+||+.+...+...+|+|||+||+...+...|.++||+...-+.+++|||++|+.|+|. -.+.+.++. ...+
T Consensus       231 de~ly~tk~d~~~kn~e~~e~a~Ria~ei~~~at~~~h~~ae~~~~gpd~~~I~ee~~ys~sd~~~~r~~~~~~~~~~qd  310 (756)
T KOG2375|consen  231 DEELYTTKLDKKVKNYEAYEGAERIAREIESLATSDAHHLAERRLGGPDREDIEEEDLYSRSDGPGVRFENEDFNEAMQD  310 (756)
T ss_pred             ehhhhcceecccCCchhhHHHHHHhhccccccchhHHHHhhccCCCCcchhhhhhhhhcccccccchhhhhhhhhHHHHh
Confidence            99999999999854455599999999999999999999999998877777889999999966554 345666665 2457


Q ss_pred             ccccCCCcc--ccCCCCCCccCcccchhccc
Q 045896          308 IVLNTHNNE--TFGDSSGSVDQISTDFAIAK  336 (520)
Q Consensus       308 ~~~~s~n~~--~f~~~~~s~~~~~~~~~~~~  336 (520)
                      ...+++++-  .+++...++...+.  .+++
T Consensus       311 ~~~d~i~~~~~kvn~~~k~~~~~~~--~sgk  339 (756)
T KOG2375|consen  311 KRNDKIAPLDQKVNDSTKSKALERW--NSGK  339 (756)
T ss_pred             hhccccccccCCCCccccccccccc--cccc
Confidence            788888877  88887776655554  4444

>PF06741 LsmAD: LsmAD domain; InterPro: IPR009604 This entry represents a conserved region approximately 250 residues long located on eukaryotic ataxin-2 []

Probab=99.95  E-value=3e-28  Score=201.04  Aligned_cols=71  Identities=54%  Similarity=0.856  Sum_probs=67.3

Q ss_pred             cCccccCCCCceeeeccCC-CchHHHHHHHHHHHHHHhcCCCcchhhhhhcCCcccCCCCCChhhcccccccC
Q 045896          223 FGVKTTFNEELYTTKLLRG-PQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRFSSVYRG  294 (520)
Q Consensus       223 FGVkSTFDE~LYTTkLDrs-p~ykereaeAeRIArEIE~s~t~n~HiaEERG~~~~~d~~~DEEdkYSaV~R~  294 (520)
                      |||+|||||+||||+||++ |.|++++++|+|||+|||++.+.|+|++||||+ +..+.+.|||+|||+|+|+
T Consensus         1 FGV~stydE~lYTT~Ld~~~~~~k~~~~~A~riA~EIe~~~t~n~h~~eeR~~-~~~~~~~DEE~~YSaV~R~   72 (72)
T PF06741_consen    1 FGVKSTYDENLYTTPLDRSDPDYKEREAEAERIAREIEGSTTSNIHVAEERGR-LEDDSGRDEEDKYSAVVRD   72 (72)
T ss_pred             CCCCCccCchhceeeccCCCcchHHHHHHHHHHHHHHhccCCCCchhHHHhCc-cccCCCCCHHHhccceeCC
Confidence            9999999999999999998 799999999999999999999999999999998 4557788999999999995

Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].

>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1

Probab=99.81  E-value=2.5e-20  Score=153.66  Aligned_cols=76  Identities=43%  Similarity=0.740  Sum_probs=49.0

Q ss_pred             hhHHHHHHhccCceEEEEEecCCEEEEEEeecCCCC-CeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcE
Q 045896           64 DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEK-DFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELV  142 (520)
Q Consensus        64 dRLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~-dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIV  142 (520)
                      |||+|+++|+||++|+|+++||.+|+|||++++++. +++|+|||||.++++....    ......++.++|+|+++|||
T Consensus         1 dRl~~l~~~lvG~~V~V~~~~G~~yeGif~s~s~~~~~~~vvLk~a~~~~~~~~~~----~~~~~~~~~~tlii~~~dvv   76 (77)
T PF14438_consen    1 DRLVYLLTNLVGQTVEVTTKNGSVYEGIFHSASPESNEFDVVLKMARKVPKSDQSN----SDPLSSEIVETLIIPAKDVV   76 (77)
T ss_dssp             ---HHHHHTTTTSEEEEEETTS-EEEEEEEEE-T---T--EEEEEEEETTS----------EEEEEEE-GGGEEE-----
T ss_pred             ChHHHHHHhCcCCEEEEEECCCCEEEEEEEeCCCcccceeEEEEeeeecccccccc----CCccCCCCCceEEEeccccC
Confidence            799999999999999999999999999999999987 8999999999998854321    22333445599999999998


Q ss_pred             E
Q 045896          143 Q  143 (520)
Q Consensus       143 q  143 (520)
                      |
T Consensus        77 ~   77 (77)
T PF14438_consen   77 Q   77 (77)
T ss_dssp             -
T ss_pred             C
Confidence            6

>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]

Probab=98.36  E-value=5.4e-08  Score=109.10  Aligned_cols=208  Identities=15%  Similarity=0.173  Sum_probs=153.9

Q ss_pred             cchhHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCc
Q 045896           62 SHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSEL  141 (520)
Q Consensus        62 ~~dRLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDI  141 (520)
                      ...|+..+...|++.++++.++|+..|+|+|..+..-.+  .++.-+|.+....+.+.. ..++     .+.+++..+|.
T Consensus       223 ~f~v~stFde~ly~tk~d~~~kn~e~~e~a~Ria~ei~~--~at~~~h~~ae~~~~gpd-~~~I-----~ee~~ys~sd~  294 (756)
T KOG2375|consen  223 KFNVMSTFDEELYTTKLDKKVKNYEAYEGAERIAREIES--LATSDAHHLAERRLGGPD-REDI-----EEEDLYSRSDG  294 (756)
T ss_pred             hhceeeeeehhhhcceecccCCchhhHHHHHHhhccccc--cchhHHHHhhccCCCCcc-hhhh-----hhhhhcccccc
Confidence            356888889999999999999999999999999887544  334555554432232221 1222     37788888888


Q ss_pred             EEEEEcccccccCCcccccchhhhhccccceeccCCcc----cccccccccCCCC--CCCCccccccccCCCCCCcccc-
Q 045896          142 VQVIAKDVAVTRDGFANELQSDKQRELMIDSLISQTRH----VEERELEPWIPDE--DVPQLPELENIFDDPWNSKKWD-  214 (520)
Q Consensus       142 VqV~AkdV~ls~D~~~~~~~~~~~~~FkTDTeIS~~~~----~~ERELq~W~pd~--dd~~~~sLE~~~d~~~~~~~WD-  214 (520)
                      .-+..+++.+.          ....+.++|..|+-...    -++..|++|....  .+.....++...     ..+|| 
T Consensus       295 ~~~r~~~~~~~----------~~~qd~~~d~i~~~~~kvn~~~k~~~~~~~~sgk~~~N~s~~a~~~d~-----sn~~~~  359 (756)
T KOG2375|consen  295 PGVRFENEDFN----------EAMQDKRNDKIAPLDQKVNDSTKSKALERWNSGKLLENASSYATPADA-----SNGWDE  359 (756)
T ss_pred             cchhhhhhhhh----------HHHHhhhccccccccCCCCccccccccccccccccccccccccccchh-----hcCCCc
Confidence            88887777543          13456689999887432    3378899998754  122222333211     23675 


Q ss_pred             --hhHhhhhhcCccccCCCCc--eeeeccCC--CchHHHHHHHHHHHHHHhcCCCcchhhhhhcCCcccCCCCCChhhcc
Q 045896          215 --QFETNETLFGVKTTFNEEL--YTTKLLRG--PQTEELEKEAARIAREIAGEDTQDLHLAEERGSSIHENLGIDEETRF  288 (520)
Q Consensus       215 --QFeaNEklFGVkSTFDE~L--YTTkLDrs--p~ykereaeAeRIArEIE~s~t~n~HiaEERG~~~~~d~~~DEEdkY  288 (520)
                        ||..|++-++++++|+--+  |+-.+.++  +.++.++++|..|+++|+...+....++.|.      +.+.-||.+|
T Consensus       360 n~~~q~n~kn~~~~s~~~s~~~~~~~~sek~~se~~~qr~~~~~~~~~~~~~~~~~~~~~aaes------~s~~~~~~~p  433 (756)
T KOG2375|consen  360 NSMFQVNSKNYKSKSEVESSDMSTKKPSEKNESESFEQRKKRAVDLRRSETLGPQLGKKPAAES------DSGKAEEESP  433 (756)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhhhhccccccccccccccccccc------cccccccCCC
Confidence              7999999999999999999  88888886  6799999999999999999999988888886      3457899999


Q ss_pred             cccccCCCCC
Q 045896          289 SSVYRGTGFD  298 (520)
Q Consensus       289 SaV~R~~~~~  298 (520)
                      ..|+|.....
T Consensus       434 vt~~r~~~~~  443 (756)
T KOG2375|consen  434 VTVQRKGGIE  443 (756)
T ss_pred             cccccccccc
Confidence            9999987665

>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.49  E-value=0.00075  Score=56.93  Aligned_cols=68  Identities=16%  Similarity=0.256  Sum_probs=53.9

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      |+-++..++|++|.|.+|||..|.|++.+++.-  +-|+|+.|..+..+.   .+   ...     +++.|....|..|.
T Consensus        10 l~~~L~~l~g~~V~VeLKng~~~~G~L~~vD~~--MNl~L~~~~~~~~~~---~~---~~~-----~~v~IRG~nI~yI~   76 (78)
T cd01733          10 LIILLQGLQGKVVTVELRNETTVTGRIASVDAF--MNIRLAKVTIIDRNG---KQ---VQV-----EEIMVTGRNIRYVH   76 (78)
T ss_pred             HHHHHHHCCCCEEEEEECCCCEEEEEEEEEcCC--ceeEEEEEEEEcCCC---ce---eEC-----CcEEEECCEEEEEE
Confidence            778889999999999999999999999999886  459999998775421   11   011     67888888888775


Q ss_pred             E
Q 045896          146 A  146 (520)
Q Consensus       146 A  146 (520)
                      +
T Consensus        77 l   77 (78)
T cd01733          77 I   77 (78)
T ss_pred             c
Confidence            4

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.

>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.48  E-value=0.00059  Score=59.04  Aligned_cols=72  Identities=21%  Similarity=0.316  Sum_probs=57.9

Q ss_pred             hHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           65 KLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        65 RLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      +|+.++..++|++|.|.+|||..|.|++.+++.-  +-|+|+.|..+..+.   ..   .     .-++++|....|..|
T Consensus         1 ~~~~fL~~l~g~~V~VeLKng~~~~G~L~~vD~~--MNl~L~~a~~~~~~~---~~---~-----~~~~v~IRG~nI~yi   67 (90)
T cd01724           1 KLVRFLMKLTNETVTIELKNGTIVHGTITGVDPS--MNTHLKNVKLTLKGR---NP---V-----PLDTLSIRGNNIRYF   67 (90)
T ss_pred             CHhHHHHhCCCCEEEEEECCCCEEEEEEEEEcCc--eeEEEEEEEEEcCCC---ce---e-----EcceEEEeCCEEEEE
Confidence            3677888999999999999999999999999886  459999998775521   11   1     116789999999999


Q ss_pred             EEccc
Q 045896          145 IAKDV  149 (520)
Q Consensus       145 ~AkdV  149 (520)
                      .+.|.
T Consensus        68 ~lPd~   72 (90)
T cd01724          68 ILPDS   72 (90)
T ss_pred             EcCCc
Confidence            88765

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.31  E-value=0.0019  Score=54.71  Aligned_cols=72  Identities=18%  Similarity=0.201  Sum_probs=53.7

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +.++..++|++|.|.+|||..|.|++.+++.-.  -|+|+.|..+....   .   ....   .-+++.|...-|..|..
T Consensus         3 ~~fL~~l~g~~V~VeLKng~~~~G~L~~vD~~M--Ni~L~n~~~~~~~~---~---~~~~---~~~~v~IRG~~I~~I~l   71 (81)
T cd01725           3 FSFFKTLVGKEVTVELKNDLSIRGTLHSVDQYL--NIKLTNISVTDPEK---Y---PHML---SVKNCFIRGSVVRYVQL   71 (81)
T ss_pred             hHHHHhCCCCEEEEEECCCcEEEEEEEEECCCc--ccEEEEEEEEcCCC---c---cccc---ccCeEEEECCEEEEEEe
Confidence            456788999999999999999999999999864  48999997654311   0   0011   11578999999998886


Q ss_pred             ccc
Q 045896          147 KDV  149 (520)
Q Consensus       147 kdV  149 (520)
                      .+-
T Consensus        72 p~~   74 (81)
T cd01725          72 PAD   74 (81)
T ss_pred             Chh
Confidence            543

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.28  E-value=0.0012  Score=53.75  Aligned_cols=63  Identities=19%  Similarity=0.336  Sum_probs=47.1

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      ++..++|++|.|.+++|..|+|++.+++.-  +-++|+.|.....+.   .+   ..+     ..++|...-|+.|
T Consensus         4 ~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~--mNlvL~~~~~~~~~~---~~---~~~-----~~v~IRG~~I~~I   66 (67)
T cd01726           4 FLKAIIGRPVVVKLNSGVDYRGILACLDGY--MNIALEQTEEYVNGQ---LK---NKY-----GDAFIRGNNVLYI   66 (67)
T ss_pred             HHHhhCCCeEEEEECCCCEEEEEEEEEccc--eeeEEeeEEEEeCCc---ee---eEe-----CCEEEECCEEEEE
Confidence            467789999999999999999999999975  559999997755421   11   111     4577777777655

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.23  E-value=0.0021  Score=52.90  Aligned_cols=67  Identities=24%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             HHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEEc
Q 045896           68 YLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAK  147 (520)
Q Consensus        68 yl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~Ak  147 (520)
                      -++..++|++|.|.+|||..|.|++.+++.-  +-++|+.|..+...   +..   ..     ..++.|....|..|...
T Consensus         3 ~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~--MNl~L~~~~~~~~~---g~~---~~-----~~~v~IRG~nI~~v~lP   69 (70)
T cd01721           3 KLLHEAEGHIVTVELKTGEVYRGKLIEAEDN--MNCQLKDVTVTARD---GRV---SQ-----LEQVYIRGSKIRFFILP   69 (70)
T ss_pred             HHHhhCCCCEEEEEECCCcEEEEEEEEEcCC--ceeEEEEEEEECCC---CcE---eE-----cCcEEEeCCEEEEEEeC
Confidence            3567889999999999999999999999885  45999999865431   111   01     16788999999888764

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.14  E-value=0.0014  Score=51.47  Aligned_cols=61  Identities=20%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             HhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           71 SCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        71 t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      ..++|++|.|+++||..|.|+|.+++...  -|+|+.|.......   +   ...+     ..++|....|+.|
T Consensus         2 ~~~~g~~V~V~l~~g~~~~G~L~~~D~~~--Ni~L~~~~~~~~~~---~---~~~~-----~~~~irG~~I~~I   62 (63)
T cd00600           2 KDLVGKTVRVELKDGRVLEGVLVAFDKYM--NLVLDDVEETIKEG---K---KRVL-----GLVLIRGDNVRLV   62 (63)
T ss_pred             hHHCCCEEEEEECCCcEEEEEEEEECCCC--CEEECCEEEEecCC---c---EEEC-----CeEEEECCEEEEE
Confidence            35799999999999999999999999764  49999998765521   1   1112     5788888888766

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences

Probab=97.05  E-value=0.0034  Score=51.06  Aligned_cols=63  Identities=19%  Similarity=0.299  Sum_probs=48.4

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      ++..++|++|.|++++|..|.|+|.+++.-  +-++|+.|.+...+.   ++   ..+     ..++|....|+.|
T Consensus         4 ~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~--mNlvL~~~~e~~~~~---~~---~~l-----g~~~iRG~~I~~i   66 (68)
T cd01731           4 VLKDSLNKPVLVKLKGGKEVRGRLKSYDQH--MNLVLEDAEEIDDGE---PV---RKY-----GRVVIRGDNVLFI   66 (68)
T ss_pred             HHHHhcCCEEEEEECCCCEEEEEEEEECCc--ceEEEeeEEEEecCC---eE---eEc-----CcEEEeCCEEEEE
Confidence            466789999999999999999999999986  449999998865421   11   111     4678888888766

They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.

>PRK00737 small nuclear ribonucleoprotein; Provisional

Probab=97.04  E-value=0.0035  Score=51.78  Aligned_cols=67  Identities=22%  Similarity=0.348  Sum_probs=50.4

Q ss_pred             hHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           65 KLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        65 RLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      .-+.++..++|++|.|.++||..|.|++.+++.-  +-++|+-|....++.   .   ...+     ..++|....|+.|
T Consensus         4 ~P~~~L~~~~~k~V~V~lk~g~~~~G~L~~~D~~--mNlvL~d~~e~~~~~---~---~~~l-----g~v~iRG~~V~~i   70 (72)
T PRK00737          4 RPLDVLNNALNSPVLVRLKGGREFRGELQGYDIH--MNLVLDNAEEIQDGE---V---VRKL-----GKVVIRGDNVVYV   70 (72)
T ss_pred             chHHHHHHhCCCEEEEEECCCCEEEEEEEEEccc--ceeEEeeEEEEcCCC---e---EeEc-----CcEEEeCCEEEEE
Confidence            3456677889999999999999999999999986  449999998765421   1   0011     4677888877766

>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.00  E-value=0.0041  Score=52.22  Aligned_cols=70  Identities=19%  Similarity=0.291  Sum_probs=50.6

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +.+++|++|.|+++||..|.|+|.+++....  |||..|.+....+.....  .+   ...-..++|+.+.|+.|.+
T Consensus         5 L~~~l~~~v~V~l~dgR~~~G~l~~~D~~~N--ivL~~~~E~~~~~~~~~~--~~---~r~lGlv~IrG~~Iv~i~v   74 (75)
T cd06168           5 LRSLLGRTMRIHMTDGRTLVGVFLCTDRDCN--IILGSAQEYRPPPDSFSP--TE---PRVLGLVMIPGHHIVSIEV   74 (75)
T ss_pred             HHHhcCCeEEEEEcCCeEEEEEEEEEcCCCc--EEecCcEEEEcccCccCC--cc---EEEeeeEEEeCCeEEEEEE
Confidence            5678999999999999999999999998655  999999886542211000  01   0011468899999988864

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=97.00  E-value=0.0048  Score=50.38  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=48.4

Q ss_pred             HHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           68 YLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        68 yl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      -++..++|++|.|.++||..|.|++.+++.-  +-|+|+.|.....+.   .+        ..-..++|....|+.|
T Consensus         4 ~~L~~~~g~~V~V~Lk~g~~~~G~L~~~D~~--mNi~L~~~~e~~~~~---~~--------~~lg~~~IRG~~I~~i   67 (68)
T cd01722           4 PFLNDLTGKPVIVKLKWGMEYKGTLVSVDSY--MNLQLANTEEYIDGK---ST--------GNLGEVLIRCNNVLYI   67 (68)
T ss_pred             HHHHHcCCCEEEEEECCCcEEEEEEEEECCC--EEEEEeeEEEEeCCc---cc--------cCcCcEEEECCEEEEE
Confidence            3577889999999999999999999999975  569999997664421   11        1125678888777665

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.

>smart00651 Sm snRNP Sm proteins

Probab=96.97  E-value=0.0032  Score=50.18  Aligned_cols=64  Identities=20%  Similarity=0.268  Sum_probs=49.3

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      +..++|++|.|+++||..|.|+|.+++...  -++|+.|.......  .+   ...+     ..++|....|+.|.
T Consensus         3 L~~~~~~~V~V~l~~g~~~~G~L~~~D~~~--NlvL~~~~e~~~~~--~~---~~~~-----~~~~IrG~~I~~i~   66 (67)
T smart00651        3 LKKLIGKRVLVELKNGREYRGTLKGFDQFM--NLVLEDVEETVKDG--EK---KRKL-----GLVFIRGNNIVYII   66 (67)
T ss_pred             hHHhCCcEEEEEECCCcEEEEEEEEECccc--cEEEccEEEEecCC--cE---EeEe-----CCEEEcCCEEEEEe
Confidence            567899999999999999999999999764  49999998876521  11   1112     56888888888764

small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing

>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=96.92  E-value=0.006  Score=50.91  Aligned_cols=70  Identities=17%  Similarity=0.185  Sum_probs=52.8

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +.++..++|++|.|.++||..|.|++.+++.-.  -++|+.|..+...   |++     +.  ...++.|..+-|..|..
T Consensus         3 l~~L~~~~g~~V~VeLkng~~~~G~L~~~D~~m--Ni~L~~~~~~~~~---g~~-----~~--~~~~v~IRG~~I~~i~~   70 (76)
T cd01723           3 LSLLKTAQNHPMLVELKNGETYNGHLVNCDNWM--NIHLREVICTSKD---GDK-----FW--KMPECYIRGNTIKYLRV   70 (76)
T ss_pred             hHHHHhcCCCEEEEEECCCCEEEEEEEEEcCCC--ceEEEeEEEECCC---CcE-----ee--eCCcEEEeCCEEEEEEc
Confidence            456788999999999999999999999999864  4899999876431   111     10  11568888888888865


Q ss_pred             cc
Q 045896          147 KD  148 (520)
Q Consensus       147 kd  148 (520)
                      .+
T Consensus        71 p~   72 (76)
T cd01723          71 PD   72 (76)
T ss_pred             CH
Confidence            43

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins

Probab=96.79  E-value=0.0037  Score=49.90  Aligned_cols=65  Identities=18%  Similarity=0.216  Sum_probs=50.2

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      ++..++|++|.|.++||..|.|+|.+++..  +-++|+-|..+.....     ....+     ..++|....|+.|.
T Consensus         2 ~L~~~~g~~V~V~l~~g~~~~G~L~~~D~~--~Nl~L~~~~~~~~~~~-----~~~~~-----~~~~irG~~I~~I~   66 (67)
T PF01423_consen    2 FLQKLIGKRVRVELKNGRTYRGTLVSFDQF--MNLVLSDVTETIKNGP-----EKRSL-----GLVFIRGSNIRYIS   66 (67)
T ss_dssp             HHHHTTTSEEEEEETTSEEEEEEEEEEETT--EEEEEEEEEEEETTES-----EEEEE-----EEEEEEGGGEEEEE
T ss_pred             hhHHhCCcEEEEEEeCCEEEEEEEEEeech--heEEeeeEEEEECCCC-----cEeEC-----cEEEEECCEEEEEE
Confidence            466789999999999999999999999874  5599999998765321     01122     46888888887764

In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....

>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A

Probab=96.69  E-value=0.01  Score=52.31  Aligned_cols=75  Identities=20%  Similarity=0.241  Sum_probs=52.5

Q ss_pred             HhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCccccc-ccCCCCCceeEeCCCcEEEEEccc
Q 045896           71 SCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEF-VSKPPSKNFIIPSSELVQVIAKDV  149 (520)
Q Consensus        71 t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~-vsk~~~eTLII~~kDIVqV~AkdV  149 (520)
                      ...||+.|.|..+++-+|+|+|+++++.. --|.|+.+|.--..   +.+....+ ..+...+.++|.+.||-++.+-..
T Consensus         4 ~~~IGs~ISlisk~~iRYeG~L~~Id~~~-sTItL~nVr~~GtE---~R~~~~~ipp~~~v~~~I~Fr~sDIkdL~v~e~   79 (96)
T PF12701_consen    4 DPYIGSKISLISKSDIRYEGILYSIDTED-STITLKNVRSFGTE---GRPTDREIPPSDEVYDYIVFRGSDIKDLKVIEP   79 (96)
T ss_dssp             CCCTTCEEEEEETTTEEEEEEEEEEETTT-TEEEEEEEEETTET---TSS-SS---C-CSSSSEEEEETTTEEEEEECE-
T ss_pred             ccccCCEEEEEECCCcEEEEEEEEEcCCC-CEEEeeeeeecCcC---CCCcCcccCCCCceeeEEEEEccccceEEEEcC
Confidence            35799999999999999999999999863 45999999975431   11100111 112223679999999999987443

>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=96.43  E-value=0.017  Score=48.47  Aligned_cols=74  Identities=16%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +..+||++|.|+++||..|.|+|.+++....  +||..|.+........... .....+..-..++|+...|+.|.+
T Consensus         5 l~~~l~~~V~V~l~dgR~~~G~L~~~D~~~N--lVL~~~~E~~~~~~~~~~~-~~~~~~r~lG~v~iRG~~Vv~i~v   78 (79)
T cd01717           5 MLQLINYRLRVTLQDGRQFVGQFLAFDKHMN--LVLSDCEEFRKVKKKKSKN-SEREEKRTLGLVLLRGENIVSMTV   78 (79)
T ss_pred             hHHHcCCEEEEEECCCcEEEEEEEEEcCccC--EEcCCEEEEEecccccccc-ccCcceeEeeeEEEcCCEEEEEEE
Confidence            4568999999999999999999999998654  8999998854322111000 000000111568999999988864

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=96.31  E-value=0.019  Score=47.73  Aligned_cols=64  Identities=16%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +..+++++|.|.+++|..|.|+|.+++.-.  -++|.-|.....+.   .+   ..+     ..++|....|+.|.+
T Consensus         5 L~~~i~k~V~V~L~~g~~~~G~L~~~D~~m--NlvL~~~~E~~~~~---~~---~~l-----g~v~IRG~~I~~i~~   68 (72)
T cd01719           5 LKKYMDKKLSLKLNGNRKVSGILRGFDPFM--NLVLDDAVEVNSGG---EK---NNI-----GMVVIRGNSIVMLEA   68 (72)
T ss_pred             hHHhCCCeEEEEECCCeEEEEEEEEEcccc--cEEeccEEEEccCC---ce---eEe-----ceEEECCCEEEEEEc
Confidence            556899999999999999999999999754  49999998765321   11   111     568999999998875

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit G binds subunits E and F to form a trimer which then assembles onto snRNA along with the D1/D2 and D3/B heterodimers forming a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=96.27  E-value=0.015  Score=49.26  Aligned_cols=71  Identities=18%  Similarity=0.220  Sum_probs=47.6

Q ss_pred             HhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccc-cCCCCCceeEeCCCcEEE
Q 045896           71 SCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFV-SKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        71 t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~v-sk~~~eTLII~~kDIVqV  144 (520)
                      ...||+.+.+-.+..-+|+|+|+.++++. --|.|+.+|.--..--.+..  .++. +....+.++|...||-++
T Consensus         2 ~~~IG~~isLISk~~iRYeGiL~~In~~~-sTi~L~nVr~fGTEgR~~~~--~~ipp~~~vyd~IvFrgsDIkDL   73 (74)
T cd01736           2 TPYIGSKISLISKSDIRYEGILYTINTED-STIALKNVRSFGTEGRPTDG--PEIPPSDEVYDYIVFRGSDIKDL   73 (74)
T ss_pred             ccccCceEEEEecCCcEEEEEEEeecccc-CEEEeeeeEeecccCCCCCC--CccCCCCcceeEEEEcCCccccc
Confidence            35799999999999999999999999974 46999999875442111111  1110 111125577877777543

Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles.

>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]

Probab=96.20  E-value=0.027  Score=47.12  Aligned_cols=71  Identities=21%  Similarity=0.278  Sum_probs=53.0

Q ss_pred             hhHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeec--CCCCCCCCcccccccCCCCCceeEeCCCc
Q 045896           64 DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIK--DGNFRGQKTVAEFVSKPPSKNFIIPSSEL  141 (520)
Q Consensus        64 dRLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk--~~s~~g~k~~~e~vsk~~~eTLII~~kDI  141 (520)
                      .+.+.++..++|++|.|.+++|..|.|++.+++.-.  -++|..|..+.  ++.    ..     .......++|....|
T Consensus         6 ~~~~~~l~~~~~~~V~V~lk~g~~~~G~L~~~D~~m--NlvL~d~~e~~~~~~~----~~-----~~~~~~~~~IRG~~I   74 (79)
T COG1958           6 PLPLSFLKKLLNKRVLVKLKNGREYRGTLVGFDQYM--NLVLDDVEEIISHDGE----KN-----VRRLGGEVLIRGDNI   74 (79)
T ss_pred             CCcHHHHHHhhCCEEEEEECCCCEEEEEEEEEccce--eEEEeceEEEeccCCc----cc-----cceeccEEEEECCcE
Confidence            345778888999999999999999999999998864  48999999876  321    10     011224688888888


Q ss_pred             EEEE
Q 045896          142 VQVI  145 (520)
Q Consensus       142 VqV~  145 (520)
                      +.|.
T Consensus        75 ~~I~   78 (79)
T COG1958          75 VLIS   78 (79)
T ss_pred             EEEe
Confidence            7764

>KOG1073 consensus Uncharacterized mRNA-associated protein RAP55 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=0.029  Score=59.66  Aligned_cols=75  Identities=21%  Similarity=0.265  Sum_probs=55.9

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCccccc---ccCCCCCceeEeCCCcEEEE
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEF---VSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~---vsk~~~eTLII~~kDIVqV~  145 (520)
                      +++..||..|.|.=|.--+|||||.+++++ |-.|.||.+|.--+.   +.+.....   ..| -.+.|||...||-+|.
T Consensus         3 ~~t~yIGS~ISLISk~DIRYEGILy~in~q-dSTlgLqnVRsfGTE---gRk~~~pq~p~~~k-Vy~YIlFRGSDIKDL~   77 (361)
T KOG1073|consen    3 LVTSYIGSFISLISKNDIRYEGILYTINLQ-DSTLGLQNVRSFGTE---GRKTDGPQVPPDDK-VYDYILFRGSDIKDLI   77 (361)
T ss_pred             cccccccceeEEeecccceeeeEEEecccc-ccceehhheeecccc---cCCCCCCcCCCCcc-ceeeEEecCcccceee
Confidence            356789999999999999999999999997 346889999875431   11111111   111 3367999999999999


Q ss_pred             Ecc
Q 045896          146 AKD  148 (520)
Q Consensus       146 Akd  148 (520)
                      +.+
T Consensus        78 V~~   80 (361)
T KOG1073|consen   78 VQE   80 (361)
T ss_pred             ecc
Confidence            876

>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=95.11  E-value=0.12  Score=42.92  Aligned_cols=68  Identities=18%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +..+++++|.|.+++|..|.|+|.+++...  -+||.-|.+.......+.    +   +..-.+++|....|+.|..
T Consensus         4 L~~~l~~~V~V~l~dgr~~~G~L~~~D~~~--NlvL~~~~E~~~~~~~~~----~---~~~lG~~~iRG~~I~~i~~   71 (74)
T cd01727           4 LEDYLNKTVSVITVDGRVIVGTLKGFDQAT--NLILDDSHERVYSSDEGV----E---QVVLGLYIIRGDNIAVVGE   71 (74)
T ss_pred             HHHhcCCEEEEEECCCcEEEEEEEEEcccc--CEEccceEEEEecCCCCc----e---eeEeceEEECCCEEEEEEc
Confidence            456799999999999999999999998864  489999877533111111    1   0111568888888887754

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=95.00  E-value=0.15  Score=43.37  Aligned_cols=71  Identities=13%  Similarity=0.127  Sum_probs=48.3

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      +..+||++|.|++++|..|.|+|.+++.-..  +||.-|.+.......... ..+.  ...-..++|....|+.|.
T Consensus         7 L~~~i~k~V~V~l~~gr~~~G~L~~~D~~mN--lvL~~~~E~~~~~~~~~~-~~~~--~~~lG~v~iRG~nV~~i~   77 (81)
T cd01729           7 LSKYVDKKIRVKFQGGREVTGILKGYDQLLN--LVLDDTVEYLRDPDDPYK-LTDK--TRQLGLVVCRGTSVVLIS   77 (81)
T ss_pred             HHHhcCCeEEEEECCCcEEEEEEEEEcCccc--EEecCEEEEEccCCcccc-cccc--eeEccEEEEcCCEEEEEe
Confidence            5667999999999999999999999988644  899999886542111100 0000  001145778888777764

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm7 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=94.88  E-value=0.15  Score=42.89  Aligned_cols=69  Identities=12%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      +-++..+++++|.|.+++|..|.|+|.+++.-  +-+||.-|.+.......+.     .   ..-..++|....|+.|.
T Consensus         5 ~~~L~~~~~~~V~V~l~~gr~~~G~L~g~D~~--mNlvL~da~E~~~~~~~~~-----~---~~lg~v~iRG~nV~~i~   73 (76)
T cd01732           5 LELIDKCIGSRIWIVMKSDKEFVGTLLGFDDY--VNMVLEDVTEYEITPEGRK-----I---TKLDQILLNGNNICMLV   73 (76)
T ss_pred             HHHHHHhCCCEEEEEECCCeEEEEEEEEeccc--eEEEEccEEEEEEcCCCce-----e---eEcCeEEEeCCeEEEEE
Confidence            34566779999999999999999999999886  4489999987652111111     0   01146788877777764

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>PF11095 Gemin7: Gem-associated protein 7 (Gemin7); InterPro: IPR020338 Gem-associated protein 7 (Gemin7) is a component of the survival of motor neuron complex, which functions in the assembly of spliceosomal small nuclear ribonucleoproteins

Probab=94.75  E-value=0.12  Score=44.40  Aligned_cols=70  Identities=10%  Similarity=0.132  Sum_probs=48.6

Q ss_pred             ccchhHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCC
Q 045896           61 SSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSE  140 (520)
Q Consensus        61 ~~~dRLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kD  140 (520)
                      -+++|+|.++..|+|++|++++.+.....|.|.+++.+...-.|    ..+..+        ..+.     +.=++...|
T Consensus        10 ~LRerfLr~l~~~~gk~v~f~l~e~t~V~a~F~a~d~~~~~f~V----s~L~TP--------lGv~-----~eAlLR~~D   72 (80)
T PF11095_consen   10 FLRERFLRSLLAMVGKPVEFTLHENTTVSARFGACDIDVSNFQV----SNLQTP--------LGVQ-----PEALLRCSD   72 (80)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEEEGGG-EEEEEEEEE-TTS-EEEE----EEEETT--------TTEE-----EEEEEEGGG
T ss_pred             HHHHHHHHHHHHhcCCceEEEEeCCeEEEEEEEEecCchheEEh----hhcCCC--------cccC-----hhheeecCC
Confidence            36899999999999999999999999999999999987532122    222221        1111     345778888


Q ss_pred             cEEEEEc
Q 045896          141 LVQVIAK  147 (520)
Q Consensus       141 IVqV~Ak  147 (520)
                      |+.+.++
T Consensus        73 Vi~~~f~   79 (80)
T PF11095_consen   73 VISISFD   79 (80)
T ss_dssp             EEEEEE-
T ss_pred             EEEEEec
Confidence            8888753

Gemin7 interacts with several Sm proteins of spliceosomal small nuclear ribonucleoproteins, especially SmE []. Gem-associated protein 7 is found in the nucleoplasm, in nuclear "gems" (Gemini of Cajal bodies), and in the cytoplasm. Three transcript variants encoding the same protein have been found for this gene [].; GO: 0032797 SMN complex; PDB: 1Y96_D.

>cd01730 LSm3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=94.59  E-value=0.19  Score=42.56  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=36.1

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecC
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD  113 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~  113 (520)
                      ++...++++|.|.+++|..|.|+|.+++.-.  -+||.-|.+...
T Consensus         5 ~l~~~~~k~V~V~l~~gr~~~G~L~~fD~~m--NlvL~d~~E~~~   47 (82)
T cd01730           5 LIRLSLDERVYVKLRGDRELRGRLHAYDQHL--NMILGDVEETIT   47 (82)
T ss_pred             HHHHhCCCEEEEEECCCCEEEEEEEEEccce--EEeccceEEEee
Confidence            3455699999999999999999999998864  488998887654

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm3 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=94.49  E-value=0.15  Score=42.76  Aligned_cols=65  Identities=17%  Similarity=0.122  Sum_probs=45.8

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      +...++++|.|.+++|..|.|+|.+++.-..  ++|.-|.+.-.......        +..-..++|....|+.|
T Consensus         7 L~~~l~k~v~V~l~~gr~~~G~L~~fD~~~N--lvL~d~~E~~~~~~~~~--------~~~lG~~viRG~~V~~i   71 (74)
T cd01728           7 LVDDLDKKVVVLLRDGRKLIGILRSFDQFAN--LVLQDTVERIYVGDKYG--------DIPRGIFIIRGENVVLL   71 (74)
T ss_pred             HHHhcCCEEEEEEcCCeEEEEEEEEECCccc--EEecceEEEEecCCccc--------eeEeeEEEEECCEEEEE
Confidence            4567999999999999999999999998644  88999876532111000        11114677777777665

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm1 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.

>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation

Probab=91.67  E-value=1.2  Score=38.72  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=37.7

Q ss_pred             HHHHHHhc-cCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecC
Q 045896           66 LLYLASCL-IGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD  113 (520)
Q Consensus        66 Llyl~t~L-IG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~  113 (520)
                      |-+|-.|+ .|++|.|++++|..|.|.|.+++.-  +-+||.-|.++..
T Consensus         4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L~~fD~h--mNlvL~d~~E~~~   50 (87)
T cd01720           4 LSLLTQAVKNNTQVLINCRNNKKLLGRVKAFDRH--CNMVLENVKEMWT   50 (87)
T ss_pred             HHHHHHHHcCCCEEEEEEcCCCEEEEEEEEecCc--cEEEEcceEEEee
Confidence            44555565 5999999999999999999999886  4589999988654

Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.

>KOG1783 consensus Small nuclear ribonucleoprotein F [RNA processing and modification]

Probab=87.99  E-value=0.36  Score=41.03  Aligned_cols=43  Identities=19%  Similarity=0.332  Sum_probs=32.5

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecC
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD  113 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~  113 (520)
                      ++..+||++|.|.+.+|.-|.|++.+++-=  +-|.|.-|-..-+
T Consensus        10 fl~~iiGr~V~VKl~sgvdyrG~l~~lDgy--mNiaLe~tee~~n   52 (77)
T KOG1783|consen   10 FLKAIIGRTVVVKLNSGVDYRGTLVCLDGY--MNIALESTEEYVN   52 (77)
T ss_pred             HHHHHhCCeEEEEecCCccccceehhhhhH--HHHHHHHHHHHhc
Confidence            577899999999999999999999997642  2255555444333

>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]

Probab=85.08  E-value=1.1  Score=41.63  Aligned_cols=44  Identities=18%  Similarity=0.204  Sum_probs=35.4

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeec
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIK  112 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk  112 (520)
                      |+|+...-|+++.|.+|||..|.|+|+.++.-..  |-|+-+-...
T Consensus         4 LsLL~~aq~~pmlvELKNget~nGhL~~cD~wMN--l~L~~Vi~ts   47 (134)
T KOG3293|consen    4 LSLLKTAQNHPMLVELKNGETYNGHLVNCDNWMN--LHLREVICTS   47 (134)
T ss_pred             hhHHHhcCCCeEEEEecCCCEecceeecchhhhh--cchheeEEec
Confidence            6788999999999999999999999999987533  5565554433

>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]

Probab=84.18  E-value=4.8  Score=36.65  Aligned_cols=70  Identities=20%  Similarity=0.304  Sum_probs=52.1

Q ss_pred             hHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           65 KLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        65 RLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      .|+-+++.+-+..|.|.++||++..|.+...+...  -+.|+.+...-++    +     .+..   +++.|-...|=++
T Consensus         2 klvr~L~kl~~e~vtIeLkngt~v~G~I~~Vd~~M--n~~l~~v~~t~~~----~-----pv~l---~~lsirgnniRy~   67 (109)
T KOG3428|consen    2 KLVRFLKKLLNERVTIELKNGTIVHGTIDSVDVQM--NTHLKHVKMTVKG----E-----PVRL---DTLSIRGNNIRYY   67 (109)
T ss_pred             hHHHHHHHhhCCeEEEEecCCcEEeeeEEEEEhhh--eeEEEEEEEecCC----C-----ceeE---EEEEeecceEEEE
Confidence            37788999999999999999999999999988754  3667766665442    1     1222   6777788888777


Q ss_pred             EEcc
Q 045896          145 IAKD  148 (520)
Q Consensus       145 ~Akd  148 (520)
                      ...|
T Consensus        68 ~lpD   71 (109)
T KOG3428|consen   68 ILPD   71 (109)
T ss_pred             EccC
Confidence            7654

>KOG3448 consensus Predicted snRNP core protein [RNA processing and modification]

Probab=83.68  E-value=3.9  Score=36.14  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=33.7

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecC
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD  113 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~  113 (520)
                      ++-.+||+.|.|.+||+--+.|++|++++=  +-+-|...+.+..
T Consensus         6 fFkslvg~~V~VeLKnd~~i~GtL~svDqy--LNlkL~di~v~d~   48 (96)
T KOG3448|consen    6 FFKSLVGKEVVVELKNDLSICGTLHSVDQY--LNLKLTDISVTDP   48 (96)
T ss_pred             HHHHhcCCeEEEEEcCCcEEEEEecccchh--heeEEeeeEeeCc
Confidence            567799999999999999999999999873  2344555555544

>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]

Probab=82.29  E-value=3.5  Score=35.19  Aligned_cols=48  Identities=27%  Similarity=0.328  Sum_probs=36.0

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCC
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRG  118 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g  118 (520)
                      ++..|+|++|.|.+|=|..|.|.+.+.+.=  |-+-|-.|...-++...+
T Consensus        12 FL~~l~gk~V~vkLKwg~eYkG~LvsvD~Y--mNlqL~~~eE~idG~~~g   59 (79)
T KOG3482|consen   12 FLNGLTGKPVLVKLKWGQEYKGTLVSVDNY--MNLQLANAEEYIDGVSTG   59 (79)
T ss_pred             HHhhccCCeEEEEEecCcEEEEEEEEecch--hheehhhhhhhhcccccc
Confidence            467799999999999999999999997653  335566666544544443

>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function

Probab=81.64  E-value=3.8  Score=34.22  Aligned_cols=39  Identities=31%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeee
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMA  108 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~A  108 (520)
                      +.-.+..+||+.|.|++.-|.+ .|+|..+.||  . |+|...
T Consensus        12 vyq~lq~liG~~vvV~T~~g~v-~G~L~~V~pD--h-Ivl~~~   50 (66)
T PF10842_consen   12 VYQTLQSLIGQRVVVQTTRGSV-RGILVDVKPD--H-IVLEEN   50 (66)
T ss_pred             HHHHHHHhcCCEEEEEEcCCcE-EEEEEeecCC--E-EEEEeC
Confidence            4456677999999999998887 9999999996  2 566553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	520
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 54/394 (13%), Positives = 96/394 (24%), Gaps = 134/394 (34%)

Query: 60  VSSHDKLLYLASCLIGLSVE--VQVKG----G-SVYAGIFHATSDEK-----DFGVI-LK 106
           VS     L L   L+ L     V + G    G +  A         K     DF +  L 
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLN 188

Query: 107 MARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAKDVAVTRDGFANELQSDKQR 166
           +                E V        +    +L+  I  +     D  +N        
Sbjct: 189 L----------KNCNSPETV--------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 167 ELMIDSLISQTRHVEERELEPWIPDEDVPQLPELENIFDDPWNSKKWDQFETNETLFGVK 226
           +  +  L+    +  E  L              L  +  +  N+K W+ F         K
Sbjct: 231 QAELRRLLKSKPY--ENCL--------------L--VLLNVQNAKAWNAFN-----LSCK 267

Query: 227 TTFNEELYTTK------LLRGPQTEEL----------EKEAARIAREIAGEDTQDLHLAE 270
                 L TT+       L    T  +            E   +  +      QDL    
Sbjct: 268 I-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 271 ERGSSIHENLGIDEETRFSSVYRGTGFDDSGYEEDEDIVLNTHNNETFGDSSGSVDQIST 330
              +    ++ I E  R   +     +     ++   I+              S++ +  
Sbjct: 323 LTTNPRRLSI-IAESIR-DGLATWDNWKHVNCDKLTTII------------ESSLNVLEP 368

Query: 331 --------DFAIAKSSDGAQLSSSSFIVDEAQTSQSDGTGADLYCSEIPSRNFSTL--DS 380
                     ++             F                   + IP+   S +  D 
Sbjct: 369 AEYRKMFDRLSV-------------FPPS----------------AHIPTILLSLIWFDV 399

Query: 381 ESRVQENLLGECGGNNDAKDFVEKQPLPEDAQLP 414
                  ++ +          VEKQP      +P
Sbjct: 400 IKSDVMVVVNKL----HKYSLVEKQPKESTISIP 429

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
1d3b_A	75	Protein (small nuclear ribonucleoprotein SM D3); s	97.1
1h64_1	75	SnRNP SM-like protein; SM fold, spliceosome, snRNP	97.03
1th7_A	81	SnRNP-2, small nuclear riboprotein protein; archae	96.99
1i4k_A	77	Putative snRNP SM-like protein; core snRNP domain,	96.98
3s6n_G	76	Small nuclear ribonucleoprotein G; SMN complex, SM	96.97
3s6n_F	86	Small nuclear ribonucleoprotein F; SMN complex, SM	96.95
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	96.93
1y96_A	86	Gemin6, SIP2, GEM-associated protein 6; SM fold, p	96.91
2y9a_D	126	Small nuclear ribonucleoprotein SM D3; splicing-RN	96.85
1ljo_A	77	Archaeal SM-like protein AF-SM2; snRNP, core snRNP	96.69
1i8f_A	81	Putative snRNP SM-like protein; beta barrel-like S	96.61
4emk_B	75	U6 snRNA-associated SM-like protein LSM6; SM fold,	96.56
2fb7_A	95	SM-like protein, LSM-14_N (RAP55); DR.13312, BC055	96.51
2vxe_A	88	CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA	96.47
4emh_A	105	Probable U6 snRNA-associated SM-like protein LSM4;	96.43
1n9r_A	93	SMF, small nuclear ribonucleoprotein F, snRNP-F, S	96.37
1mgq_A	83	SM-like protein; LSM, RNA-binding, archea, RNA bin	96.3
4emk_A	94	U6 snRNA-associated SM-like protein LSM5; SM fold,	96.22
1d3b_B	91	Protein (small nuclear ribonucleoprotein associat	96.14
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	95.99
3bw1_A	96	SMX4 protein, U6 snRNA-associated SM-like protein	95.87
4emk_C	113	U6 snRNA-associated SM-like protein LSM7; SM fold,	95.87
1y96_B	85	Gemin7, SIP3, GEM-associated protein 7; SM fold, p	95.54
1m5q_A	130	SMAP3, small nuclear ribonucleoprotein homolog, SM	95.49
4emg_A	93	Probable U6 snRNA-associated SM-like protein LSM3;	94.78
2fwk_A	121	U6 snRNA-associated SM-like protein LSM5; structur	94.69
3s6n_E	92	Small nuclear ribonucleoprotein E; SMN complex, SM	92.85
2vc8_A	84	Enhancer of mRNA-decapping protein 3; P-BODY compo	92.7
1b34_B	118	Protein (small nuclear ribonucleoprotein SM D2); s	92.69
4a53_A	125	EDC3; RNA binding protein; NMR {Schizosaccharomyce	85.35

>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1

Probab=97.10  E-value=0.0016  Score=52.89  Aligned_cols=69  Identities=16%  Similarity=0.214  Sum_probs=53.3

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      -+-++..++|++|.|.+++|..|.|++.+++.-.  -++|+-|..+...   ++.  .. +     ..++|....|..|.
T Consensus         6 P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~M--Nl~L~~~~e~~~~---~~~--~~-l-----g~v~IRG~nI~~i~   72 (75)
T 1d3b_A            6 PIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNM--NCQMSNITVTYRD---GRV--AQ-L-----EQVYIRGCKIRFLI   72 (75)
T ss_dssp             HHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTC--CEEEEEEEEECTT---SCE--EE-E-----EEEEECGGGEEEEE
T ss_pred             HHHHHHHhCCCEEEEEECCCcEEEEEEEEEccce--eEEEEeEEEECCC---CcE--EE-c-----CeEEEeCCEEEEEE
Confidence            4667889999999999999999999999998764  4999999987531   111  11 1     46788888888876


Q ss_pred             Ec
Q 045896          146 AK  147 (520)
Q Consensus       146 Ak  147 (520)
                      +.
T Consensus        73 lP   74 (75)
T 1d3b_A           73 LP   74 (75)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*

Probab=97.03  E-value=0.0013  Score=53.10  Aligned_cols=68  Identities=19%  Similarity=0.239  Sum_probs=52.7

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      -+-++..++|++|.|.++||..|.|+|.+++.-..  ++|+-|.....+.   .   .-.+     ..++|....|+.|.
T Consensus         5 P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mN--lvL~d~~e~~~~~---~---~~~l-----g~v~iRG~~I~~i~   71 (75)
T 1h64_1            5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLN--VVLADAEMIQDGE---V---VKRY-----GKIVIRGDNVLAIS   71 (75)
T ss_dssp             HHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCC--EEEEEEEEEETTE---E---EEEE-----EEEEECGGGEEEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCC--eEEeeEEEEeeCC---c---eeEC-----CEEEECCCEEEEEE
Confidence            45678889999999999999999999999997644  9999998875421   1   1111     45788888888876


Q ss_pred             E
Q 045896          146 A  146 (520)
Q Consensus       146 A  146 (520)
                      .
T Consensus        72 ~   72 (75)
T 1h64_1           72 P   72 (75)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1

Probab=96.99  E-value=0.0025  Score=52.29  Aligned_cols=72  Identities=11%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             chhHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcE
Q 045896           63 HDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELV  142 (520)
Q Consensus        63 ~dRLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIV  142 (520)
                      ...-+-++..++|++|.|.++||..|.|+|.+++.-..  ++|+.|.....+.   ..   -.+     ..++|....|+
T Consensus         7 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mN--lvL~d~~e~~~~~---~~---~~l-----g~v~iRG~~I~   73 (81)
T 1th7_A            7 AETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMN--LVLSDSEEIQSDG---SG---KKL-----GTIVIRGDNVI   73 (81)
T ss_dssp             CHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCC--EEEEEEEEECSSS---CE---EEE-----EEEEECGGGEE
T ss_pred             ccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCC--EEEccEEEEecCC---ce---eEC-----CEEEECCCEEE
Confidence            34556778899999999999999999999999997644  9999999876421   11   112     45788888888


Q ss_pred             EEEEc
Q 045896          143 QVIAK  147 (520)
Q Consensus       143 qV~Ak  147 (520)
                      .|...
T Consensus        74 ~i~~~   78 (81)
T 1th7_A           74 LISPL   78 (81)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88653

>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*

Probab=96.98  E-value=0.0018  Score=52.42  Aligned_cols=68  Identities=22%  Similarity=0.289  Sum_probs=52.5

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +-++..++|++|.|.++||..|.|+|.+++.-..  ++|+.|.....+.   .   .-.+     ..++|....|+.|..
T Consensus         6 ~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mN--lvL~d~~e~~~~~---~---~~~l-----g~v~iRG~~I~~i~~   72 (77)
T 1i4k_A            6 LDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMN--LVLLDAEEIQNGE---V---VRKV-----GSVVIRGDTVVFVSP   72 (77)
T ss_dssp             HHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCC--EEEEEEEEEETTE---E---EEEE-----EEEEECGGGEEEEEE
T ss_pred             HHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCC--eEEeeEEEEecCC---c---EeEC-----CEEEECCCEEEEEEe
Confidence            4567889999999999999999999999997644  9999998875421   1   1111     467888888888865


Q ss_pred             c
Q 045896          147 K  147 (520)
Q Consensus       147 k  147 (520)
                      .
T Consensus        73 ~   73 (77)
T 1i4k_A           73 A   73 (77)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G

Probab=96.97  E-value=0.0026  Score=51.66  Aligned_cols=65  Identities=11%  Similarity=0.197  Sum_probs=45.8

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      ++..++|++|.|.++||..|.|+|.+++.-.  -++|..|.......   ..   -     .-..++|....|+.|..
T Consensus         8 ~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~m--NlvL~~~~e~~~~~---~~---~-----~lg~v~iRG~~I~~i~~   72 (76)
T 3s6n_G            8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFM--NLVIDECVEMATSG---QQ---N-----NIGMVVIRGNSIIMLEA   72 (76)
T ss_dssp             ------CCEEEEEETTTEEEEEEEEEECTTC--CEEEEEEEECCCC---------------CBSSEEECSSSEEEEEC
T ss_pred             HHHHhCCCeEEEEECCCcEEEEEEEEECCcc--eEEEeceEEEccCC---cE---e-----EcCEEEECCCeEEEEEe
Confidence            4678999999999999999999999998754  49999998865421   11   0     11568899999988864

>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F

Probab=96.95  E-value=0.0022  Score=53.56  Aligned_cols=69  Identities=17%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +-++..++|++|.|.+++|..|.|+|.+++.-.  -++|+-|....++.    .  ...+     ..++|....|+.|..
T Consensus         8 ~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~m--NlvL~d~~e~~~g~----~--~~~l-----g~v~IRG~nI~~i~~   74 (86)
T 3s6n_F            8 KPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYM--NMQLANTEEYIDGA----L--SGHL-----GEVLIRCNNVLYIRG   74 (86)
T ss_dssp             HHHHHHHTTSEEEEEETTSCEEEEEEEEECTTC--CEEEEEEEEEETTE----E--EEEE-----SSEEECGGGEEEEEE
T ss_pred             HHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCce--EEEEeeEEEEcCCc----e--eeEc-----cEEEEeCCeEEEEEe
Confidence            456788999999999999999999999998864  49999998765421    0  0112     568899999998876


Q ss_pred             cc
Q 045896          147 KD  148 (520)
Q Consensus       147 kd  148 (520)
                      .|
T Consensus        75 ~d   76 (86)
T 3s6n_F           75 VE   76 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=96.93  E-value=0.0024  Score=56.34  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=55.1

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      ++-++..++|++|.|.++||.+|.|+|.+++.-..  ++|+.|.++...   +..   -.+     ..++|....|+.|.
T Consensus         3 p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MN--lvL~d~~e~~~~---~~~---~~l-----g~v~IRG~nI~~I~   69 (119)
T 1b34_A            3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMN--THLKAVKMTLKN---REP---VQL-----ETLSIRGNNIRYFI   69 (119)
T ss_dssp             HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCC--EEEEEEEEECTT---SCC---EEE-----EEEEECGGGEEEEE
T ss_pred             hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccce--EEeccEEEecCC---Cce---eEc-----ceEEEcCCeEEEEE
Confidence            45678889999999999999999999999997644  999999987542   111   111     56888999999888


Q ss_pred             Eccc
Q 045896          146 AKDV  149 (520)
Q Consensus       146 AkdV  149 (520)
                      ..|-
T Consensus        70 ~pd~   73 (119)
T 1b34_A           70 LPDS   73 (119)
T ss_dssp             CCTT
T ss_pred             eccc
Confidence            6543

>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}

Probab=96.91  E-value=0.0011  Score=56.13  Aligned_cols=61  Identities=16%  Similarity=0.050  Sum_probs=46.8

Q ss_pred             HHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEEc
Q 045896           69 LASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAK  147 (520)
Q Consensus        69 l~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~Ak  147 (520)
                      -+..+||++|.|++.||..|.|++++++|.. |.|||-.|   ..   .+.     +      ...+|...=|..|.+.
T Consensus        11 el~~li~KeV~V~l~dg~~y~G~l~tvDp~s-~sIvL~n~---~~---~~~-----~------~~~iI~G~aI~eI~v~   71 (86)
T 1y96_A           11 EWQDYIYKEVRVTASEKNEYKGWVLTTDPVS-ANIVLVNF---LE---DGS-----M------SVTGIMGHAVQTVETM   71 (86)
T ss_dssp             HHHHTTTCEEEEEETTTEEEEEEEEEECTTT-CCEEEEEE---CT---TSC-----E------EEEEECGGGEEEEEEE
T ss_pred             HHHhhcCCEEEEEEcCCCEEEEEEEEECCCc-eEEEEeec---cc---CCe-----E------EEEEEecceEEEEEEe
Confidence            3678999999999999999999999999864 77999877   11   111     1      3467777777777654

>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D

Probab=96.85  E-value=0.0028  Score=56.80  Aligned_cols=70  Identities=19%  Similarity=0.241  Sum_probs=55.2

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +-++..++|++|.|.+++|..|.|+|.+++.-.  -|+|+.|..+...   ++.  . .+     ..++|....|..|.+
T Consensus         7 ~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~M--Ni~L~dv~e~~~~---g~~--~-~l-----~~v~IRGnnI~~I~l   73 (126)
T 2y9a_D            7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNM--NCQMSNITVTYRD---GRV--A-QL-----EQVYIRGSKIRFLIL   73 (126)
T ss_dssp             HHHHHSCSSCEEEEEESSCCEEEEEEEEECTTS--CEEEEEEEEECTT---SCC--E-EE-----EEEEECGGGEEEEEC
T ss_pred             HHHHHHhCCCEEEEEECCCcEEEEEEEEEcCce--EEEEeeEEEEcCC---CcE--e-ec-----ccEEEeCCEEEEEEc
Confidence            567889999999999999999999999999764  4999999887531   111  1 11     568999999999987


Q ss_pred             ccc
Q 045896          147 KDV  149 (520)
Q Consensus       147 kdV  149 (520)
                      .+.
T Consensus        74 pd~   76 (126)
T 2y9a_D           74 PDM   76 (126)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            654

>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1

Probab=96.69  E-value=0.0042  Score=50.32  Aligned_cols=68  Identities=15%  Similarity=0.272  Sum_probs=52.1

Q ss_pred             HHHHHhccCceEEEEEecC-CEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGG-SVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdG-svYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      +-++..++|++|.|.+++| ..|.|+|.+++.-..  ++|+-|.....+.   .   .-.+     ..++|....|+.|.
T Consensus         7 ~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mN--lvL~d~~e~~~~~---~---~~~l-----g~v~iRG~nI~~i~   73 (77)
T 1ljo_A            7 NQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMN--LYLTNAMECKGEE---K---VRSL-----GEIVLRGNNVVLIQ   73 (77)
T ss_dssp             HHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCC--EEEEEEEEEETTE---E---EEEE-----EEEEECGGGEEEEE
T ss_pred             HHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcce--EEEeeEEEEecCC---c---EeEC-----CeEEEeCCeEEEEE
Confidence            4567889999999999999 999999999997644  9999998876421   1   1111     45788888888876


Q ss_pred             Ec
Q 045896          146 AK  147 (520)
Q Consensus       146 Ak  147 (520)
                      ..
T Consensus        74 ~~   75 (77)
T 1ljo_A           74 PQ   75 (77)
T ss_dssp             EC
T ss_pred             eC
Confidence            53

>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*

Probab=96.61  E-value=0.0041  Score=51.04  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=52.2

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      -+-++..++|++|.|.++||..|.|+|.+++.-..  ++|+.|... ++   ..   .-.+     ..++|....|+.|.
T Consensus        12 P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mN--lvL~d~~e~-~~---~~---~~~l-----g~v~iRG~~I~~i~   77 (81)
T 1i8f_A           12 LGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVN--LLLEDAEEI-ID---GN---VYKR-----GTMVVRGENVLFIS   77 (81)
T ss_dssp             HHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCC--EEEEEEEEE-ET---TE---EEEE-----EEEEECGGGEEEEE
T ss_pred             hHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCe--eEEccEEEE-cC---Cc---ccCC-----CEEEECCCEEEEEE
Confidence            45567889999999999999999999999997644  999999988 31   11   1112     46888888888886


Q ss_pred             Ec
Q 045896          146 AK  147 (520)
Q Consensus       146 Ak  147 (520)
                      ..
T Consensus        78 ~~   79 (81)
T 1i8f_A           78 PV   79 (81)
T ss_dssp             EC
T ss_pred             eC
Confidence            53

>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B

Probab=96.56  E-value=0.0042  Score=50.28  Aligned_cols=67  Identities=18%  Similarity=0.276  Sum_probs=50.5

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +-++..++|++|.|.++||..|.|+|.+++.-  +-++|+.|....++.   .+   ..+     ..++|....|+.|..
T Consensus         6 ~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~--mNlvL~d~~e~~~~~---~~---~~l-----g~v~iRG~~I~~i~~   72 (75)
T 4emk_B            6 NEFLNKVIGKKVLIRLSSGVDYKGILSCLDGY--MNLALERTEEYVNGK---KT---NVY-----GDAFIRGNNVLYVSA   72 (75)
T ss_dssp             HHHHHHTTTSEEEEECTTSCEEEEEEEEECTT--CEEEEEEEEEEETTE---EE---EEE-----EEEEEEGGGSSEEEE
T ss_pred             HHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCc--ceEEEccEEEEecCC---cc---cEe-----cEEEEcCCeEEEEEe
Confidence            45678899999999999999999999999875  449999998765421   00   111     457777777777754

>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A

Probab=96.51  E-value=0.0092  Score=51.39  Aligned_cols=75  Identities=16%  Similarity=0.185  Sum_probs=53.6

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCccccc-ccCCCCCceeEeCCCcEEEEEcc
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEF-VSKPPSKNFIIPSSELVQVIAKD  148 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~-vsk~~~eTLII~~kDIVqV~Akd  148 (520)
                      .+..||..+.+..+..-+|+|||++++++. -.|.|+.+|.--...-...   ..+ .+....+.++|.+.||-++.+.+
T Consensus        14 ~~~~IGs~ISLISk~dIRYeGiL~~In~~~-sTiaL~nVRsfGTEgR~~~---~~ipp~~~vyeyIvFrGsDIKDL~V~e   89 (95)
T 2fb7_A           14 GTPYIGSKISLISKAEIRYEGILYTIDTEN-STVALAKVRSFGTEDRPTD---RPIAPRDETFEYIIFRGSDIKDLTVCE   89 (95)
T ss_dssp             --CCSSEEEEEEETTTEEEEEEEEEEETTT-TEEEEESCCCCSCCSSSCS---SCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred             cCcccCCeEEEEECCCceEEEEEecccCcc-CEEEEEeeeEecccCCCCC---CccCCCCcceeEEEEcCCCcceEEEec
Confidence            456899999999999999999999999974 4599999987644211111   111 11112367999999999998754

>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}

Probab=96.47  E-value=0.012  Score=50.06  Aligned_cols=72  Identities=11%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             hccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCccccc-ccCCCCCceeEeCCCcEEEEEc
Q 045896           72 CLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEF-VSKPPSKNFIIPSSELVQVIAK  147 (520)
Q Consensus        72 ~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~-vsk~~~eTLII~~kDIVqV~Ak  147 (520)
                      -.||+.+.+..+..-+|+|||++++++. -.|.|+.+|.--...-..+   .++ .+....+.++|...||-++.+.
T Consensus        10 ~yIGs~iSLISk~dIRYeGiL~~In~~~-sTi~L~nVrsfGTEgR~~~---~~ipp~~~vy~yIvFrgsDIKdL~V~   82 (88)
T 2vxe_A           10 PELGSKISLISKADIRYEGRLYTVDPQE-CTIALSSVRSFGTEDRDTQ---FQIAPQSQIYDYILFRGSDIKDIRVV   82 (88)
T ss_dssp             CCTTCEEEEEETTTEEEEEEEEEEETTT-TEEEEEEEEECCCTTTCCS---SCCCCCCSCEEEEEEETTTEEEEEEC
T ss_pred             cccCCeEEEEECCCceEEEEEeeecCcc-cEEEEEeeeEecCcCCCCC---cccCCCCceeeEEEEccCCccEEEEe
Confidence            4699999999999999999999999974 4599999998654221111   111 0111125699999999998763

>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}

Probab=96.43  E-value=0.0045  Score=53.81  Aligned_cols=72  Identities=17%  Similarity=0.193  Sum_probs=46.0

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      .+.++..++|++|.|.+++|..|.|+|.+++.-.  -++|+-|..+...   ++.  ...+     ..++|....|+.|.
T Consensus        17 p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~M--NlvL~d~~e~~~d---g~~--~~~l-----g~v~IRG~nI~~I~   84 (105)
T 4emh_A           17 PLTLLNATQGRPILVELKNGETFNGHLENCDNYM--NLTLREVIRTMPD---GDK--FFRL-----PECYIRGNNIKYLR   84 (105)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEEEECTTC--CEEEEEEEEECTT---SCE--EEEE-----EEEEECGGGEEEEE
T ss_pred             HHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCc--eEEEEEEEEEccC---Cce--eeEc-----CeEEEeCCeEEEEe
Confidence            6677899999999999999999999999998754  4999999876431   111  0111     56888888888887


Q ss_pred             Eccc
Q 045896          146 AKDV  149 (520)
Q Consensus       146 AkdV  149 (520)
                      ..|-
T Consensus        85 ~pd~   88 (105)
T 4emh_A           85 IQDE   88 (105)
T ss_dssp             C---
T ss_pred             cCHH
Confidence            6554

>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A

Probab=96.37  E-value=0.0061  Score=51.74  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=50.1

Q ss_pred             HHHHHHhccCceEEEEEecC-CEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGG-SVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdG-svYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      .+-++..++|++|.|.+++| ..|.|+|.+++.-.  -++|+-|....++.   .+   ..+     ..++|....|+.|
T Consensus        22 P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~M--NlvL~d~~E~~~~~---~~---~~l-----g~v~IRG~nI~~I   88 (93)
T 1n9r_A           22 PKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYF--NLQLNEAEEFVAGV---SH---GTL-----GEIFIRCNNVLYI   88 (93)
T ss_dssp             ----CGGGTTSEEEEEESSTTEEEEEEEEECCTTT--CEEEEEEEEEETTE---EE---EEC-----CSEEECGGGEEEE
T ss_pred             hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEcccc--EEEEeeEEEEcCCC---eE---eEc-----CEEEEcCCeEEEE
Confidence            45567889999999999999 99999999998764  49999998875321   11   112     5688888888887


Q ss_pred             EE
Q 045896          145 IA  146 (520)
Q Consensus       145 ~A  146 (520)
                      ..
T Consensus        89 ~~   90 (93)
T 1n9r_A           89 RE   90 (93)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A

Probab=96.30  E-value=0.0067  Score=50.03  Aligned_cols=66  Identities=17%  Similarity=0.300  Sum_probs=49.1

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      +-++..++|++|.|.++||..|.|+|.+++.-..  ++|+.|.+...+.   .   .-.+     ..++|....|+.|.
T Consensus        17 ~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mN--lvL~d~~e~~~~~---~---~~~l-----g~v~IRG~~I~~i~   82 (83)
T 1mgq_A           17 LDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMN--LVLNDAEELEDGE---V---TRRL-----GTVLIRGDNIVYIS   82 (83)
T ss_dssp             THHHHHTTTSEEEEEETTTEEEEEEEEEECTTCC--EEEEEEEEEETTE---E---EEEE-----EEEEECGGGEEEEE
T ss_pred             HHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCce--eEEccEEEEecCC---c---ccCC-----CEEEECCCEEEEEE
Confidence            3467788999999999999999999999997644  9999998875421   0   0111     45677777776653

>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A

Probab=96.22  E-value=0.017  Score=49.30  Aligned_cols=67  Identities=21%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeec-CCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIK-DGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk-~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      +.++..++|++|.|.+++|..|.|+|.+++.-.  -+||.-|.+.. ++   +.+   -.+     ..++|....|+.|.
T Consensus        22 l~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~m--NlvL~d~~E~~~~~---~~~---~~l-----g~v~IRG~nI~~i~   88 (94)
T 4emk_A           22 LELIDKCIGSNLWVIMKSEREFAGTLVGFDDYV--NIVLKDVTEYDTVT---GVT---EKH-----SEMLLNGNGMCMLI   88 (94)
T ss_dssp             HHHHHHTTTSEEEEEESSSEEEEEEEEEECTTC--CEEEEEEEEEETTT---CCE---EEE-----EEEEECSTTEEEEE
T ss_pred             HHHHHHHcCCeEEEEECCCcEEEEEEEEEcccC--CeEeeeEEEEecCC---CcE---eEc-----CEEEEcCCEEEEEE
Confidence            567889999999999999999999999998754  49999998876 21   111   112     46788888888876


Q ss_pred             E
Q 045896          146 A  146 (520)
Q Consensus       146 A  146 (520)
                      .
T Consensus        89 p   89 (94)
T 4emk_A           89 P   89 (94)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A

Probab=96.14  E-value=0.011  Score=49.33  Aligned_cols=74  Identities=14%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCC-CCCCC-CcccccccCCCCCceeEeCCCcEEEEEc
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDG-NFRGQ-KTVAEFVSKPPSKNFIIPSSELVQVIAK  147 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~-s~~g~-k~~~e~vsk~~~eTLII~~kDIVqV~Ak  147 (520)
                      +..+||++|.|.++||..|.|+|.+++....  +||.-|.+.... ...+. ......   ..-..++|....|+.|.+.
T Consensus         9 L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mN--lvL~d~~E~~~~~~~~~~~~~~~~~---~~lg~v~iRG~~I~~i~~~   83 (91)
T 1d3b_B            9 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMN--LILCDCDEFRKIKPKNSKQAEREEK---RVLGLVLLRGENLVSMTVE   83 (91)
T ss_dssp             CGGGTTSEEEEEETTCCEEEEEEEECCTTCC--EEEEEEEEEEEECCSSTTSCCEEEE---EEEEEEEECGGGEEEEEEE
T ss_pred             HHHHcCCcEEEEECCCeEEEEEEEEECCCCe--EEecCEEEEeeccccccccccCccE---eECCEEEECCCeEEEEEcC
Confidence            4679999999999999999999999997644  999999874210 00000 000000   0014588899999988765


Q ss_pred             c
Q 045896          148 D  148 (520)
Q Consensus       148 d  148 (520)
                      +
T Consensus        84 ~   84 (91)
T 1d3b_B           84 G   84 (91)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A

Probab=95.99  E-value=0.017  Score=56.76  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecC--CCCCCCCcccccccCCCCCceeEeCCCcEEEEEc
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD--GNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAK  147 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~--~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~Ak  147 (520)
                      +..+|+++|.|+++||.+|.|+|.+++...+  |||..|.+...  .+...... .+  .+..-..++|....|+.|.+.
T Consensus         9 L~klIdKrV~V~LkdGRel~GtLkgFDq~MN--LVL~Da~E~~~ik~k~~k~~~-~~--~~R~LGlV~IRGdnIV~Isve   83 (231)
T 3pgw_B            9 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMN--LILCDCDEFRKIKPKNSKQAE-RE--EKRVLGLVLLRGENLVSMTVE   83 (231)
T ss_pred             HHHhcCCeEEEEECCCcEEEEEEEEEccccc--EEecCEEEEEeccCccccccc-cc--ceeEeceEEECCCcEEEEEec
Confidence            5678999999999999999999999987644  99999988532  11100000 00  111125689999999999876


Q ss_pred             cc
Q 045896          148 DV  149 (520)
Q Consensus       148 dV  149 (520)
                      +-
T Consensus        84 ~p   85 (231)
T 3pgw_B           84 GP   85 (231)
T ss_pred             CC
Confidence            54

>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.028  Score=47.64  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCC-CcccccccCCCCCceeEeCCCcEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQ-KTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~-k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      .+-++..++|++|.|.+++|..|.|+|.+++.-..  +||.-|.........+. ....-.+     ..++|....|+.|
T Consensus        11 p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mN--lVL~d~~E~~~~~~~~~~~~~~r~l-----G~v~IRG~nVv~I   83 (96)
T 3bw1_A           11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCN--IVLSDAVETIYQLNNEELSESERRC-----EMVFIRGDTVTLI   83 (96)
T ss_dssp             HHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCC--EEEEEEEEEEECCSTTCCCEEEEEE-----EEEEECGGGEEEE
T ss_pred             HHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCc--EEEcCEEEEeccccccccCcceeEc-----CEEEECCCEEEEE
Confidence            45568889999999999999999999999997644  99999987643111100 0000011     3578888888888


Q ss_pred             EE
Q 045896          145 IA  146 (520)
Q Consensus       145 ~A  146 (520)
                      ..
T Consensus        84 ~~   85 (96)
T 3bw1_A           84 ST   85 (96)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C

Probab=95.87  E-value=0.028  Score=49.36  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=47.6

Q ss_pred             cCccchhHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCC--cccccccCCCCCceeE
Q 045896           59 AVSSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQK--TVAEFVSKPPSKNFII  136 (520)
Q Consensus        59 ~s~~~dRLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k--~~~e~vsk~~~eTLII  136 (520)
                      +.|.++-++. +..+||++|.|.++||..|.|+|.+++.-..  +||.-|........ +..  ...-.+     ..++|
T Consensus        18 ~~~kke~i~~-L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mN--LVL~d~~E~~~~~~-~~~~~~~~r~l-----G~v~I   88 (113)
T 4emk_C           18 ERPRKESILD-LSRYQDQRIQATFTGGRQITGILKGFDQLMN--LVLDDVEEQLRNPE-DGKLTGAIRKL-----GLVVV   88 (113)
T ss_dssp             ---------------CCSEEEEEETTSCEEEEEEEEECTTCC--EEEEEEEEEC----------CCEEEE-----EEEEE
T ss_pred             cCCccchHHH-HHHHcCCcEEEEEeCCeEEEEEEEEEcCccc--EEEeeEEEEEcCCC-CcccccceeEc-----cEEEE
Confidence            5555655555 5667999999999999999999999987644  99999988654211 100  000111     45888


Q ss_pred             eCCCcEEEEEcc
Q 045896          137 PSSELVQVIAKD  148 (520)
Q Consensus       137 ~~kDIVqV~Akd  148 (520)
                      ....|+.|..-|
T Consensus        89 RG~nIv~I~~~d  100 (113)
T 4emk_C           89 RGTTLVLIAPMD  100 (113)
T ss_dssp             CTTTEEEEEECC
T ss_pred             CCCeEEEEEecC
Confidence            999999887643

>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}

Probab=95.54  E-value=0.047  Score=46.20  Aligned_cols=69  Identities=13%  Similarity=0.137  Sum_probs=51.8

Q ss_pred             ccchhHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCC
Q 045896           61 SSHDKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSE  140 (520)
Q Consensus        61 ~~~dRLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kD  140 (520)
                      -+++|+|++++.|+|++|++++..+....|.|.+++.+...-+    +..+..+        ..++     +.=++...|
T Consensus        15 ~LReRfLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~----Vs~L~TP--------iGv~-----~eAlLR~~D   77 (85)
T 1y96_B           15 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFY----VSQLQTP--------IGVQ-----AEALLRCSD   77 (85)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEE----EEEECCT--------TCCE-----EEEEEEGGG
T ss_pred             HHHHHHHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeE----hhhcCCC--------cccc-----hhhhhhcCC
Confidence            3689999999999999999999999999999999998754222    2333331        1112     346778889


Q ss_pred             cEEEEE
Q 045896          141 LVQVIA  146 (520)
Q Consensus       141 IVqV~A  146 (520)
                      |+.+.+
T Consensus        78 ii~~sF   83 (85)
T 1y96_B           78 IISYTF   83 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988875

>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1

Probab=95.49  E-value=0.029  Score=50.44  Aligned_cols=65  Identities=22%  Similarity=0.355  Sum_probs=51.9

Q ss_pred             HHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEEc
Q 045896           68 YLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAK  147 (520)
Q Consensus        68 yl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~Ak  147 (520)
                      -++..++|++|.|.+++|..|.|+|.+++.-.  -++|.-|.....     .    . +     ..++|....|+.|...
T Consensus         3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~M--NlvL~d~~E~~~-----~----~-l-----g~v~IRG~nI~~I~~~   65 (130)
T 1m5q_A            3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQL--NIVLANASNKAG-----E----K-F-----NRVFIMYRYIVHIDST   65 (130)
T ss_dssp             HHHHHTTTSEEEEEETTSCEEEEEEEEECTTC--CEEEEEEECTTC-----C----E-E-----EEEEECGGGEEEEEEC
T ss_pred             hHHHHhCCCeEEEEECCCcEEEEEEEEEcccc--eeEEeeEEEEcC-----C----E-e-----ceEEEeCCeEEEEEcC
Confidence            46788999999999999999999999999764  489999987631     1    1 1     4578888899888876


Q ss_pred             cc
Q 045896          148 DV  149 (520)
Q Consensus       148 dV  149 (520)
                      +-
T Consensus        66 d~   67 (130)
T 1m5q_A           66 ER   67 (130)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}

Probab=94.78  E-value=0.071  Score=45.03  Aligned_cols=45  Identities=24%  Similarity=0.266  Sum_probs=38.1

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecC
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKD  113 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~  113 (520)
                      +-++..++|++|.|.+++|..|.|+|.+++.-.  -+||.-|.....
T Consensus        11 l~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~m--NlvL~d~~E~~~   55 (93)
T 4emg_A           11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHL--NMVLGDAEEIVT   55 (93)
T ss_dssp             THHHHTTTTSEEEEEETTTEEEEEEEEEECTTC--CEEEEEEEEEEC
T ss_pred             HHHHHHhCCCEEEEEECCCcEEEEEEEEECCcc--cEEeecEEEEEe
Confidence            346677899999999999999999999998764  489999987643

>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A

Probab=94.69  E-value=0.041  Score=48.55  Aligned_cols=79  Identities=13%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCc-cccc---ccCCCCCceeEeCCCc
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKT-VAEF---VSKPPSKNFIIPSSEL  141 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~-~~e~---vsk~~~eTLII~~kDI  141 (520)
                      =+-++..++|++|.|.+++|..|.|+|++++.-..  +||.-|.+......+.... ....   ..+..-..++|....|
T Consensus        29 Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mN--lVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nV  106 (121)
T 2fwk_A           29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVN--MVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNV  106 (121)
T ss_dssp             HHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCC--EEEESCCEEEC---------------CEECCCCSEEEECGGGE
T ss_pred             cHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCC--eEeceEEEEEeccccccccccCcccccccceEcceEEECCCEE
Confidence            46678889999999999999999999999997644  8999987754210000000 0000   0011125678888888


Q ss_pred             EEEEE
Q 045896          142 VQVIA  146 (520)
Q Consensus       142 VqV~A  146 (520)
                      +.|..
T Consensus       107 v~I~~  111 (121)
T 2fwk_A          107 AMLVP  111 (121)
T ss_dssp             EEEES
T ss_pred             EEEEe
Confidence            88864

>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E

Probab=92.85  E-value=0.15  Score=43.09  Aligned_cols=67  Identities=10%  Similarity=0.115  Sum_probs=49.1

Q ss_pred             HHHHhccCceEEEEE----ecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEE
Q 045896           68 YLASCLIGLSVEVQV----KGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQ  143 (520)
Q Consensus        68 yl~t~LIG~~VeVtv----kdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVq  143 (520)
                      -++...+|++|.|++    ++|..|.|+|.+++.-.  -+||.-|.+.....  ..+   ..+     ..++|....|+.
T Consensus        19 ~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~m--NlvL~d~~E~~~~~--~~~---~~l-----g~v~iRG~nV~~   86 (92)
T 3s6n_E           19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYM--NLVLDDAEEIHSKT--KSR---KQL-----GRIMLKGDNITL   86 (92)
T ss_dssp             HHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTC--CEEEEEEEEECSSS--CCE---EEE-----EEEEECGGGEEE
T ss_pred             HHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcC--cEEEeeeEEEecCC--Cce---eEc-----CeEEEeCCEEEE
Confidence            457788899999999    99999999999998754  49999998865311  111   111     457777777777


Q ss_pred             EEE
Q 045896          144 VIA  146 (520)
Q Consensus       144 V~A  146 (520)
                      |..
T Consensus        87 i~~   89 (92)
T 3s6n_E           87 LQS   89 (92)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            754

>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}

Probab=92.70  E-value=0.21  Score=42.18  Aligned_cols=60  Identities=15%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             hccCceEEEEEecCC-EEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           72 CLIGLSVEVQVKGGS-VYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        72 ~LIG~~VeVtvkdGs-vYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      ..||..|.|+.++.- +|+|++..+++.. -.|+|..|  .++|-            +++...++|..+||-.+.+
T Consensus         6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~-~tItL~~~--f~NG~------------~~~s~eVtls~~DI~~L~i   66 (84)
T 2vc8_A            6 DWLGSIVSINCGDSLGVYQGRVSAVDQVS-QTISLTRP--FHNGV------------KCLVPEVTFRAGDITELKI   66 (84)
T ss_dssp             TTTTCEEEEECCTTTCEEEEEEEEEETTT-TEEEEEEE--EETTE------------ECSSSEEEEEGGGCSEEEE
T ss_pred             cccCCEEEEEECCCceEEEEEEEEeccCC-CeEEEehh--hhCCC------------CCCCcEEEEEecChhheEE
Confidence            479999999999999 9999999999864 34667666  45531            1222458899999988876

>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B

Probab=92.69  E-value=0.35  Score=42.36  Aligned_cols=78  Identities=10%  Similarity=0.117  Sum_probs=47.3

Q ss_pred             HHHHHhcc--CceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcc--cccc-cCCCCCceeEeCCCc
Q 045896           67 LYLASCLI--GLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTV--AEFV-SKPPSKNFIIPSSEL  141 (520)
Q Consensus        67 lyl~t~LI--G~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~--~e~v-sk~~~eTLII~~kDI  141 (520)
                      +-++..++  |++|.|.+++|..|.|+|.+++.-..  +||.-|.........+.+..  ...+ .+..-..++|....|
T Consensus        29 l~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mN--lvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nV  106 (118)
T 1b34_B           29 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCN--MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV  106 (118)
T ss_dssp             HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCC--EEEEEEEEC-------------------CEEEEEEEECGGGE
T ss_pred             HHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceE--EEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEE
Confidence            34555666  69999999999999999999997644  89999987642110000000  0000 000013578888888


Q ss_pred             EEEEE
Q 045896          142 VQVIA  146 (520)
Q Consensus       142 VqV~A  146 (520)
                      +.|..
T Consensus       107 v~I~~  111 (118)
T 1b34_B          107 IVVLR  111 (118)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87764

>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A

Probab=85.35  E-value=0.74  Score=41.39  Aligned_cols=56  Identities=18%  Similarity=0.228  Sum_probs=43.1

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEE--eeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEEc
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVIL--KMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAK  147 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVL--K~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~Ak  147 (520)
                      ++-.+|..|.|+++||.+|.|++..++...   |+|  +.|.  .                   ....|.++||.++.+-
T Consensus         7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k~---LtL~~~~a~--~-------------------s~~~I~asdI~DLkVl   62 (125)
T 4a53_A            7 VADFYGSNVEVLLNNDSKARGVITNFDSSN---SILQLRLAN--D-------------------STKSIVTKDIKDLRIL   62 (125)
T ss_dssp             HHHHTTCEEEEEETTSCEEEEEEEEEETTT---TEEEEEETT--T-------------------EEEEEEGGGEEEEEEC
T ss_pred             HHHhcCceEEEEECCCCEeeEEEEeecCCe---eEEeccccc--c-------------------ccceeecccccceeee
Confidence            566899999999999999999999997653   677  5541  0                   1237888999998874


Q ss_pred             cc
Q 045896          148 DV  149 (520)
Q Consensus       148 dV  149 (520)
                      .+
T Consensus        63 ~~   64 (125)
T 4a53_A           63 PK   64 (125)
T ss_dssp             CS
T ss_pred             ec
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	520
d1d3ba_	72	D3 core SNRNP protein {Human (Homo sapiens) [TaxId	97.53
d1th7a1	76	Archaeal homoheptameric Sm protein {Sulfolobus sol	97.32
d1i4k1_	72	Archaeal homoheptameric Sm protein {Archaeon Archa	97.32
d1b34a_	80	D1 core SNRNP protein {Human (Homo sapiens) [TaxId	97.19
d1h641_	71	Archaeal homoheptameric Sm protein {Archaeon Pyroc	97.14
d1mgqa_	74	Archaeal homoheptameric Sm protein {Archaeon Metha	97.09
d1d3bb_	81	B core SNRNP protein {Human (Homo sapiens) [TaxId:	96.75
d1i8fa_	71	Archaeal homoheptameric Sm protein {Archaeon Pyrob	96.68
d2vxfa1	80	LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio)	96.64
d1ljoa_	75	Archaeal homoheptameric Sm protein {Archaeon Archa	96.54
d1n9ra_	68	Small nuclear ribonucleoprotein F, Smf {Baker's ye	96.37
d1m5q1_	127	Sm-Like archaeal protein Smap3 {Archaeon Pyrobacul	96.29
d2fwka1	92	U6 snRNA-associated sm-like protein LSM5 {Cryptosp	95.72
d1b34b_	93	D2 core SNRNP protein {Human (Homo sapiens) [TaxId	91.61

>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: D3 core SNRNP protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00013  Score=57.06  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +.++..++|++|.|.+|||..|.|++.+++.-.  -|+|+.|..+...   ++.   ...     ..++|...-|..|.+
T Consensus         4 l~~L~~~~g~~V~VeLkng~~~~G~L~~~D~~m--Ni~L~~~~~~~~~---~~~---~~~-----~~v~IRG~~I~~i~l   70 (72)
T d1d3ba_           4 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNM--NCQMSNITVTYRD---GRV---AQL-----EQVYIRGCKIRFLIL   70 (72)
T ss_dssp             HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTC--CEEEEEEEEECTT---SCE---EEE-----EEEEECGGGEEEEEE
T ss_pred             hHHHHhcCCCEEEEEECCCeEEEEEEEEEcCCe--eEEEEEEEEEcCC---CcE---eEc-----CeEEEECCEEEEEEc
Confidence            456888999999999999999999999999864  4999999876542   111   112     568888888888876


Q ss_pred             cc
Q 045896          147 KD  148 (520)
Q Consensus       147 kd  148 (520)
                      .|
T Consensus        71 pd   72 (72)
T d1d3ba_          71 PD   72 (72)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.32  E-value=0.00034  Score=55.18  Aligned_cols=70  Identities=11%  Similarity=0.207  Sum_probs=53.2

Q ss_pred             hhHHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEE
Q 045896           64 DKLLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQ  143 (520)
Q Consensus        64 dRLlyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVq  143 (520)
                      ++-.-++..++|++|.|.++||..|.|+|.+++....  ++|+.|.......   ++   ..+     ..++|.+..|+.
T Consensus         6 ~~~~~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~mN--lvL~~~~e~~~~~---~~---~~~-----~~v~iRG~~I~~   72 (76)
T d1th7a1           6 ETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMN--LVLSDSEEIQSDG---SG---KKL-----GTIVIRGDNVIL   72 (76)
T ss_dssp             HHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCC--EEEEEEEEECSSS---CE---EEE-----EEEEECGGGEEE
T ss_pred             ccHHHHHHHhCCCEEEEEECCCCEEEEEEEEECCCCC--EEEeEEEEEecCC---cc---cCc-----ceEEEECCEEEE
Confidence            3444566789999999999999999999999988644  9999998765421   11   112     568888888887


Q ss_pred             EEE
Q 045896          144 VIA  146 (520)
Q Consensus       144 V~A  146 (520)
                      |.+
T Consensus        73 I~~   75 (76)
T d1th7a1          73 ISP   75 (76)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            754

>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]

Probab=97.32  E-value=0.00024  Score=55.44  Aligned_cols=66  Identities=23%  Similarity=0.298  Sum_probs=51.0

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      +-++..++|++|.|.++||..|.|+|.+++....  ++|+.|.+...+.   .   ...+     ..++|.+..|+.|.
T Consensus         5 l~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~mN--lvL~~~~e~~~~~---~---~~~~-----g~~~IRG~~I~~Is   70 (72)
T d1i4k1_           5 LDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMN--LVLLDAEEIQNGE---V---VRKV-----GSVVIRGDTVVFVS   70 (72)
T ss_dssp             HHHHHTTTTSEEEEEEGGGCEEEEEEEEECTTCC--EEEEEEEEESSSS---E---EEEE-----EEEEECGGGEEEEE
T ss_pred             HHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCCC--eEEeeEEEEecCC---e---EeEc-----ceEEEeCCeEEEEE
Confidence            5578899999999999999999999999988644  9999998765421   1   1112     46788888777663

>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: D1 core SNRNP protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00055  Score=54.64  Aligned_cols=70  Identities=16%  Similarity=0.207  Sum_probs=54.9

Q ss_pred             HHHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           66 LLYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        66 Llyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      |+=++..++|++|.|.+|||..|.|++..++...  -++|+.|..+..+   +..  . ..     +.+.|.+.-|-.|.
T Consensus         2 lv~fL~~~~g~~V~VeLkng~~~~G~L~~~D~~M--Nl~L~~~~~~~~~---~~~--~-~~-----~~v~IRG~~Ir~i~   68 (80)
T d1b34a_           2 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSM--NTHLKAVKMTLKN---REP--V-QL-----ETLSIRGNNIRYFI   68 (80)
T ss_dssp             HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTC--CEEEEEEEEECTT---SCC--E-EE-----EEEEECGGGEEEEE
T ss_pred             HHHHHHHcCCCEEEEEECCCCEEEEEEEEEcCCc--EEEEEEEEEEcCC---CCE--E-Ec-----ccEEEcCCEEEEEE
Confidence            6678899999999999999999999999998864  4999999887652   111  1 11     56888888888887


Q ss_pred             Ecc
Q 045896          146 AKD  148 (520)
Q Consensus       146 Akd  148 (520)
                      +.|
T Consensus        69 lPd   71 (80)
T d1b34a_          69 LPD   71 (80)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            643

>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.14  E-value=0.00037  Score=54.01  Aligned_cols=66  Identities=20%  Similarity=0.257  Sum_probs=50.2

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      +-++..++|+.|.|.++||..|.|+|.+++....  ++|+.|..+.++.   +   ...+     ..++|.+.-|+.|.
T Consensus         4 l~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~mN--lvL~~~~e~~~~~---~---~~~l-----~~~~IRG~~I~~Is   69 (71)
T d1h641_           4 LDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLN--VVLADAEMIQDGE---V---VKRY-----GKIVIRGDNVLAIS   69 (71)
T ss_dssp             HHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCC--EEEEEEEEEETTE---E---EEEE-----EEEEECGGGEEEEE
T ss_pred             hHHHHHhCCCEEEEEEcCCCEEEEEEEEECCCCC--eEEeeEEEEecCC---c---EeEc-----CcEEEECCeEEEEe
Confidence            4467789999999999999999999999998644  9999998876421   1   1111     46778887777663

>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.09  E-value=0.00039  Score=54.42  Aligned_cols=64  Identities=16%  Similarity=0.289  Sum_probs=48.6

Q ss_pred             HHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEE
Q 045896           68 YLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQV  144 (520)
Q Consensus        68 yl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV  144 (520)
                      -++..++|++|.|.++||..|.|+|.+++...  -|+|+-|.....+.   .   ...+     ..++|.+..|+.|
T Consensus         9 ~~L~~~~~k~V~V~lk~g~~~~G~L~~~D~~m--Nl~L~~~~e~~~~~---~---~~~~-----~~~~IRG~~I~~I   72 (74)
T d1mgqa_           9 DALGNSLNSPVIIKLKGDREFRGVLKSFDLHM--NLVLNDAEELEDGE---V---TRRL-----GTVLIRGDNIVYI   72 (74)
T ss_dssp             HHHHHTTTSEEEEEETTTEEEEEEEEEECTTC--CEEEEEEEEEETTE---E---EEEE-----EEEEECGGGEEEE
T ss_pred             HHHHHhCCCeEEEEECCCCEEEEEEEEECCCC--CeEEeeEEEEeCCC---e---EeEc-----ceEEEeCCEEEEE
Confidence            46778999999999999999999999998864  49999998765421   1   1112     4577777777655

>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: B core SNRNP protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0011  Score=52.70  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=50.4

Q ss_pred             HHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEEc
Q 045896           70 ASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIAK  147 (520)
Q Consensus        70 ~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~Ak  147 (520)
                      +..+|+++|.|+++||..|.|+|.+++....  |||..|.+.-............. .+..-..++|+...|+.|.+.
T Consensus         3 L~~~l~~rv~V~l~dgR~~~G~L~~~D~~~N--lvL~~~~E~~~~~~~~~~~~~~~-~~r~lG~v~IRG~~Iv~i~~~   77 (81)
T d1d3bb_           3 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMN--LILCDCDEFRKIKPKNSKQAERE-EKRVLGLVLLRGENLVSMTVE   77 (81)
T ss_dssp             CGGGTTSEEEEEETTCCEEEEEEEECCTTCC--EEEEEEEEEEEECCSSTTSCCEE-EEEEEEEEEECGGGEEEEEEE
T ss_pred             hHHHCCCEEEEEEcCCCEEEEEEEEECCccC--EEEcCEEEEEeecCccccccccc-eEEEeeeEEEeCCEEEEEEcc
Confidence            3568999999999999999999999998655  99999987421111111100000 000013589999999998764

>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.68  E-value=0.002  Score=50.11  Aligned_cols=64  Identities=17%  Similarity=0.218  Sum_probs=49.3

Q ss_pred             HHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           68 YLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        68 yl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      -++..++|++|.|.++||..|.|+|.+++....  ++|+.|..+..+    +.   ..+     ..++|....|+.|.
T Consensus         5 ~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mN--ivL~~~~e~~~~----~~---~~~-----g~v~iRG~~I~~I~   68 (71)
T d1i8fa_           5 ATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVN--LLLEDAEEIIDG----NV---YKR-----GTMVVRGENVLFIS   68 (71)
T ss_dssp             HHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCC--EEEEEEEEEETT----EE---EEE-----EEEEECGGGEEEEE
T ss_pred             HHHHHhCCCEEEEEECCCCEEEEEEEEECCCcc--eEEccEEEEECC----CE---EEc-----ceEEEeCCeEEEEe
Confidence            357789999999999999999999999998644  999999876542    11   011     45788888887664

>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: LSM14 N-terminal domain-like
domain: LSM14 homolog A (Lsm14a)
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=96.64  E-value=0.0043  Score=49.97  Aligned_cols=72  Identities=18%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             ccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccc-cCCCCCceeEeCCCcEEEEEcc
Q 045896           73 LIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFV-SKPPSKNFIIPSSELVQVIAKD  148 (520)
Q Consensus        73 LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~v-sk~~~eTLII~~kDIVqV~Akd  148 (520)
                      .||+.+.+-.|..-+|+|||++++++. -.|.|+.+|..-...   -+...++. +....+.++|...||-++.+.+
T Consensus         2 yIGs~IsLISk~dIRYeGiL~~Id~~~-sTi~L~nVrsfGTEg---R~~~~~ipp~~~vy~~IvFrgsDIKdL~v~e   74 (80)
T d2vxfa1           2 YIGSKISLISKAEIRYEGILYTIDTEN-STVALAKVRSFGTED---RPTDRPIAPRDETFEYIIFRGSDIKDLTVCE   74 (80)
T ss_dssp             STTSEEEEEETTSCEEEEEEEEEETTT-TEEEEEEEEECCSTT---SCCSSCCCCCCCCEEEEEEETTTEEEEEESS
T ss_pred             ccCCEEEEEEcCCcEEEEEEEeecccc-CEEEeeeeeEeecCC---CCCCCccCCCCcceeEEEEcCcCcceEEecc
Confidence            489999999999999999999999974 469999999865421   11111110 1112257999999999887643

>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Archaeal homoheptameric Sm protein
species: Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]

Probab=96.54  E-value=0.0029  Score=49.75  Aligned_cols=65  Identities=15%  Similarity=0.278  Sum_probs=48.8

Q ss_pred             HHHHhccCceEEEEEecCC-EEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           68 YLASCLIGLSVEVQVKGGS-VYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        68 yl~t~LIG~~VeVtvkdGs-vYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      -++..++|++|.|.+++|. .|.|+|.+++.-.  -++|+.|.......   .   ...+     .+++|....|+.|.
T Consensus         8 ~~L~~~~~~~V~V~lk~~~~~~~G~L~~~D~~m--NlvL~~~~e~~~~~---~---~~~~-----g~~~IRG~~I~~I~   73 (75)
T d1ljoa_           8 QMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYM--NLYLTNAMECKGEE---K---VRSL-----GEIVLRGNNVVLIQ   73 (75)
T ss_dssp             HHHHHTTTSEEEEEETTCSSEEEEEEEEECTTC--CEEEEEEEEEETTE---E---EEEE-----EEEEECGGGEEEEE
T ss_pred             HHHHHhcCCEEEEEEECCCEEEEEEEEEEcCCC--cEEEeEEEEEcCCC---c---EeEc-----ceEEEeCCEEEEEE
Confidence            4577899999999999875 7999999999864  49999998765421   1   1112     46788887777664

>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Small nuclear ribonucleoprotein F, Smf
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0029  Score=48.90  Aligned_cols=62  Identities=18%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             HhccCceEEEEEecC-CEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEE
Q 045896           71 SCLIGLSVEVQVKGG-SVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVI  145 (520)
Q Consensus        71 t~LIG~~VeVtvkdG-svYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~  145 (520)
                      ..++|++|.|.+|+| ..|.|+|.+++.-..  |+|+.|..+..+..      ...+     ..++|....|+.|.
T Consensus         2 ~~~~~~~V~V~Lk~~~~~~~G~L~~~D~~mN--lvL~~~~e~~~~~~------~~~l-----g~~~IRG~nI~~I~   64 (68)
T d1n9ra_           2 KGLVNHRVGVKLKFNSTEYRGTLVSTDNYFN--LQLNEAEEFVAGVS------HGTL-----GEIFIRCNNVLYIR   64 (68)
T ss_dssp             GGGTTSEEEEEESSTTEEEEEEEEECCTTTC--EEEEEEEEEETTEE------EEEC-----CSEEECGGGEEEEE
T ss_pred             hhHCCCEEEEEEEcCCEEEEEEEEEECCcCc--eEEeeEEEEecCCc------ccCc-----CeEEEECCEEEEEE
Confidence            468999999999965 569999999988644  99999988654211      1111     56888888888875

>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: Sm-Like archaeal protein Smap3
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.29  E-value=0.0051  Score=53.25  Aligned_cols=68  Identities=22%  Similarity=0.402  Sum_probs=53.5

Q ss_pred             HHHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccccccCCCCCceeEeCCCcEEEEE
Q 045896           67 LYLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAEFVSKPPSKNFIIPSSELVQVIA  146 (520)
Q Consensus        67 lyl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e~vsk~~~eTLII~~kDIVqV~A  146 (520)
                      +-.+..++|++|.|.++||..|.|+|.+++.-  +-|+|+.|......         .+      ..++|.+.-|..|..
T Consensus         2 ~~~L~~~~gk~V~VeLkng~~~~G~L~~~D~~--mNivL~da~~~~~~---------k~------~~v~IRG~~I~~I~~   64 (127)
T d1m5q1_           2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQ--LNIVLANASNKAGE---------KF------NRVFIMYRYIVHIDS   64 (127)
T ss_dssp             HHHHHTTTTSEEEEEETTSCEEEEEEEEECTT--CCEEEEEEEETTCC---------EE------EEEEECGGGEEEEEE
T ss_pred             hhHHHHhCCCEEEEEECCCCEEEEEEEEECCC--ceEEEeEEEECCCC---------cc------cEEEEeCCeEEEEEc
Confidence            34578899999999999999999999999975  45999999764331         11      358899999999987


Q ss_pred             ccccc
Q 045896          147 KDVAV  151 (520)
Q Consensus       147 kdV~l  151 (520)
                      .+-.+
T Consensus        65 ~e~~i   69 (127)
T d1m5q1_          65 TERRI   69 (127)
T ss_dssp             CSCCC
T ss_pred             chhhc
Confidence            65433

>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: U6 snRNA-associated sm-like protein LSM5
species: Cryptosporidium parvum [TaxId: 5807]

Probab=95.72  E-value=0.007  Score=48.80  Aligned_cols=76  Identities=12%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             HHHHhccCceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcc-cc---cccCCCCCceeEeCCCcEE
Q 045896           68 YLASCLIGLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTV-AE---FVSKPPSKNFIIPSSELVQ  143 (520)
Q Consensus        68 yl~t~LIG~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~-~e---~vsk~~~eTLII~~kDIVq  143 (520)
                      -++..++|++|.|.++||..|.|+|.+++....  ++|+-|.+............ ..   ...+..-.+++|....|+.
T Consensus         8 ~~L~~~l~k~V~V~l~~gr~~~G~L~~~D~~~N--lvL~d~~E~~~~~~~~~~~~~~~~~~~~~~r~lg~~~iRG~~Vv~   85 (92)
T d2fwka1           8 ALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVN--MVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAM   85 (92)
T ss_dssp             HHHHHTBTSBCEEEETTTEEECCEEEEECTTCC--EEEESCCEEEC---------------CEECCCCSEEEECGGGEEE
T ss_pred             HHHHHHcCCEEEEEEcCCCEEEEEEEEEcCCCC--EEEeeEEEEEecCCccccccccccccccceeEcceEEEeCCEEEE
Confidence            456677899999999999999999999988654  99998887532111110000 00   0001112468888888877


Q ss_pred             EE
Q 045896          144 VI  145 (520)
Q Consensus       144 V~  145 (520)
                      |.
T Consensus        86 I~   87 (92)
T d2fwka1          86 LV   87 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Sm motif of small nuclear ribonucleoproteins, SNRNP
domain: D2 core SNRNP protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.26  Score=39.63  Aligned_cols=77  Identities=9%  Similarity=0.108  Sum_probs=45.6

Q ss_pred             HHHHhcc-CceEEEEEecCCEEEEEEeecCCCCCeeEEEeeeEeecCCCCCCCCcccc---cccCCCCCceeEeCCCcEE
Q 045896           68 YLASCLI-GLSVEVQVKGGSVYAGIFHATSDEKDFGVILKMARLIKDGNFRGQKTVAE---FVSKPPSKNFIIPSSELVQ  143 (520)
Q Consensus        68 yl~t~LI-G~~VeVtvkdGsvYeGIF~t~S~~~dfgVVLK~Ar~vk~~s~~g~k~~~e---~vsk~~~eTLII~~kDIVq  143 (520)
                      .+..|+- ++.|.|.+++|..|.|++.+++.-..  +||.-|.++-............   ...+..-..|+|....||.
T Consensus         6 ~l~~~~~~~~rV~V~lr~~r~~~G~L~afD~~~N--lVL~d~~E~~~~~~~~~~~~~~~~~~~~~R~lg~~liRGdnVv~   83 (93)
T d1b34b_           6 VLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCN--MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIV   83 (93)
T ss_dssp             HHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCC--EEEEEEEEC-------------------CEEEEEEEECGGGEEE
T ss_pred             HHHHHHhCCcEEEEEECCCCEEEEEEEEecccee--EEeeceEEEEEecCCccccccccccceeEEEeceEEEeCCEEEE
Confidence            4444443 89999999999999999999988644  8999998863311111110000   0000001357788888877


Q ss_pred             EEE
Q 045896          144 VIA  146 (520)
Q Consensus       144 V~A  146 (520)
                      |..
T Consensus        84 I~~   86 (93)
T d1b34b_          84 VLR   86 (93)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            753