Citrus Sinensis ID: 045902
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1472 | 2.2.26 [Sep-21-2011] | |||||||
| Q2PCF1 | 1461 | Pleiotropic drug resistan | N/A | no | 0.977 | 0.984 | 0.715 | 0.0 | |
| Q7PC84 | 1454 | ABC transporter G family | yes | no | 0.971 | 0.983 | 0.698 | 0.0 | |
| Q7PC87 | 1453 | ABC transporter G family | no | no | 0.972 | 0.985 | 0.695 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.959 | 0.985 | 0.615 | 0.0 | |
| Q8GU86 | 1454 | Pleiotropic drug resistan | yes | no | 0.964 | 0.976 | 0.598 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | yes | no | 0.967 | 0.982 | 0.601 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.971 | 0.990 | 0.612 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.964 | 0.974 | 0.601 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.964 | 0.974 | 0.601 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.958 | 0.982 | 0.605 | 0.0 |
| >sp|Q2PCF1|PDR2_NICPL Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2203 bits (5708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1062/1484 (71%), Positives = 1247/1484 (84%), Gaps = 45/1484 (3%)
Query: 4 DDLARTLSINGRSMSRKGSFSSASKKGWASASLREAWNNPGDVFAKS-------GREEDE 56
D+L R RS SR S+ S S S+RE + DVF K+ EE+E
Sbjct: 8 DELTRL-----RSNSRMSSWRS-------SQSIREVFGGSSDVFMKNYSTRWREMAEEEE 55
Query: 57 EELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEED 116
+ELKWAAI+RLPTY+R+RK M+K V+ NGR+ + EVD+++LG QDKK L+ESILKVVE+D
Sbjct: 56 KELKWAAIDRLPTYNRLRKGMMKEVMSNGRVVHHEVDMTKLGNQDKKVLMESILKVVEDD 115
Query: 117 NEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFL 176
NE+FL RLR RTDRVGIEIPKIEVRF+NLS+ GDAYVGTRALPTLLN++LN IE VLG +
Sbjct: 116 NEQFLRRLRNRTDRVGIEIPKIEVRFQNLSVGGDAYVGTRALPTLLNSTLNTIEAVLGLI 175
Query: 177 RLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236
L PSKKR ++IL DVSGI++PSRMTLLLGPPGSGKTT L+AL+GKS+K LRV+G++TYC
Sbjct: 176 HLSPSKKRVVKILEDVSGIIRPSRMTLLLGPPGSGKTTFLKALAGKSEKDLRVNGKITYC 235
Query: 237 GHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
GHE EFVPQRT AYISQHDLHHGEMTVRETLDF+GRCLGVGTR++LL ELSRREK+AGI
Sbjct: 236 GHEFHEFVPQRTSAYISQHDLHHGEMTVRETLDFAGRCLGVGTRYDLLVELSRREKEAGI 295
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
PDP+IDAFMKATA+ G +TSL TDYVLKILGLDICADIMVG++MRRGISGGQKKRVTTG
Sbjct: 296 MPDPQIDAFMKATAIDGQETSLITDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTG 355
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416
EMLVGPAKA FMDEIS GLDSSTT+QIV+FMRQMVHI D+TM+ISLLQPAPET+DLFDD+
Sbjct: 356 EMLVGPAKAFFMDEISKGLDSSTTYQIVKFMRQMVHINDITMVISLLQPAPETFDLFDDV 415
Query: 417 ILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRY 476
I+LSEG+IVYQGPRE VL+FFE +GFRCPERK ADFL EVTS+KDQ+QYW +K+ PY Y
Sbjct: 416 IVLSEGQIVYQGPRENVLEFFEYMGFRCPERKAIADFLLEVTSKKDQEQYWFRKSRPYVY 475
Query: 477 VSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLL 536
+SVPEF E F +F +G+++ +EL +PYDK H A LVK +YGIS+WELFK+CF REWLL
Sbjct: 476 ISVPEFSESFNSFQIGEQIIEELTIPYDKYSVHRAALVKNKYGISSWELFKSCFTREWLL 535
Query: 537 MKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAE 596
MKR+SF+Y+FKT QITIM+ IA TV+LRTQM G + D KF+GALFFSL+NVMFNGM E
Sbjct: 536 MKRSSFLYIFKTTQITIMATIALTVFLRTQMKAGTVKDSAKFWGALFFSLINVMFNGMQE 595
Query: 597 LALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATR 656
LA+T+ RLP F+KQR+ LF+PAWAFALPIWVL+IP+SL+ES+IWI+LTYYTIGFAP+A+R
Sbjct: 596 LAMTVFRLPVFFKQRNSLFYPAWAFALPIWVLKIPISLVESAIWIILTYYTIGFAPAASR 655
Query: 657 FFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWM 716
FF+QLLAF VHQM LSLFRFIAA RTQVVANTLGTFTLL+VF+LGGFIV+KDDI+ WM
Sbjct: 656 FFKQLLAFIGVHQMALSLFRFIAAAGRTQVVANTLGTFTLLMVFILGGFIVSKDDIQDWM 715
Query: 717 IWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWI 776
IWGYY+SPM YGQNAI +NEFLD+RWSAP +PTVGK LL ARG++T + +WI
Sbjct: 716 IWGYYLSPMMYGQNAIAINEFLDDRWSAPTNG----SQPTVGKTLLHARGLFTTESWYWI 771
Query: 777 CIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMS 836
I AL GFSL FN+ FIAALT+L+P +TK+V +E+ D + Q + A S
Sbjct: 772 SIGALFGFSLLFNVLFIAALTFLNPIGDTKAVKVENGDKNNRRPQETAIVGDIQMAPTRS 831
Query: 837 PPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQ 896
+T+ +V+ P+N +RKGM+LPFQPLSLAF+HVNY+VDMPAEMK+Q
Sbjct: 832 QANTS--------SVIPFPNN------ESRKGMILPFQPLSLAFNHVNYYVDMPAEMKTQ 877
Query: 897 GIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956
G+EE RLQLL+D SGAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSI+ISGYPK
Sbjct: 878 GVEEERLQLLRDASGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPK 937
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKA 1009
Q TFAR+SGYCEQNDIHSP VT+YESLLYSAWLRL D MFVEEVMELVE+K
Sbjct: 938 NQTTFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLASDVKTETRKMFVEEVMELVELKL 997
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
LRN+LVGLPGVDGLSTEQRKRLT AVELVANPSIIFMDEPTSGLDARAAAIVMRTVR TV
Sbjct: 998 LRNALVGLPGVDGLSTEQRKRLTTAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTV 1057
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIR 1129
DTGRTVVCTIHQPSIDIFEAFDEL LMK GG VIYAGPLG +SHKLVEYFE +PGVPKIR
Sbjct: 1058 DTGRTVVCTIHQPSIDIFEAFDELLLMKIGGQVIYAGPLGHRSHKLVEYFETIPGVPKIR 1117
Query: 1130 DGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTK 1189
+ NPATW+L+VSS+++E QL VDFA +YA+S+LY+RNQ LIKELS+PA SKDLYF T+
Sbjct: 1118 ESDNPATWMLDVSSSSMEAQLVVDFAEVYANSNLYQRNQLLIKELSTPATCSKDLYFPTQ 1177
Query: 1190 YSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLIN 1249
YSQ FITQCK CFWKQHWSYWRN +YNAIRFF+T +IG LFG+IFW+KG + ++QDL+N
Sbjct: 1178 YSQSFITQCKACFWKQHWSYWRNSQYNAIRFFMTVIIGILFGVIFWNKGNQIHRQQDLLN 1237
Query: 1250 LLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQ 1309
LLGA Y+AV+FLGA+NAS+V SVVAIERTVFYRERAAGMYS L YAFAQV+IE IYV+IQ
Sbjct: 1238 LLGATYAAVMFLGATNASAVQSVVAIERTVFYRERAAGMYSELPYAFAQVAIETIYVAIQ 1297
Query: 1310 TIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFL 1369
T VYSLLL+SMIG+ W KF +FY+F+ MCF YF++YGMM+VALTP QIA I+MSFFL
Sbjct: 1298 TFVYSLLLFSMIGYQWTAVKFFYFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFL 1357
Query: 1370 SFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGES-GITVK 1428
SFWNLFSGF++PR IP+WWRWYYWASPVAWTIYG+ SQ+GD+ E+E+ GE+ I V
Sbjct: 1358 SFWNLFSGFLIPRPLIPVWWRWYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVN 1417
Query: 1429 EYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLNFQRR 1472
E+L ++ GYD+DFL V AH+G+V+LFFFVF YGIKFLN+Q+R
Sbjct: 1418 EFLKEYLGYDHDFLLVVVFAHVGWVLLFFFVFAYGIKFLNYQKR 1461
|
May be a general defense protein. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q7PC84|AB39G_ARATH ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2161 bits (5599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1468 (69%), Positives = 1221/1468 (83%), Gaps = 38/1468 (2%)
Query: 16 SMSRKGSFSSASKKGW--ASASLREAWNNPGD-VFAKSGR-EEDEEELKWAAIERLPTYD 71
++S + S +S S + AS S R+ + D VF +S R EED+ EL+WAAIERLPT+D
Sbjct: 14 ALSGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDMELRWAAIERLPTFD 73
Query: 72 RVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRV 131
R+RK ML NG+I E++D++ L +DKK+L+E IL VEEDNEKFL LRERTDRV
Sbjct: 74 RLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRV 133
Query: 132 GIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHD 191
GIE+PKIEVR+EN+S+EGD +RALPTL N +LN +E +LGF L PSK++K++IL D
Sbjct: 134 GIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHLLPSKRKKIQILKD 193
Query: 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAY 251
+SGIVKPSRMTLLLGPP SGKTTLLQAL+GK D +L++SGR+TYCGHE EFVPQ+TCAY
Sbjct: 194 ISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAY 253
Query: 252 ISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAM 311
ISQHDLH GEMTVRE LDFSGRCLGVG+R++L++ELSRREK+ GIKPDP+IDAFMK+ A+
Sbjct: 254 ISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAI 313
Query: 312 SGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEI 371
SG +TSL TDYVLKILGLDICADI+ G+ MRRGISGGQKKR+TTGEMLVGPA+ALFMDEI
Sbjct: 314 SGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEI 373
Query: 372 STGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPRE 431
STGLDSSTTFQI +FMRQ+VHI+DVTMIISLLQPAPET++LFDDIILLSEG+IVYQGPR+
Sbjct: 374 STGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRD 433
Query: 432 YVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHV 491
VL+FFE GF+CPERKG ADFLQEVTS+KDQ+QYW K+ +PY YVSV +F F TFH
Sbjct: 434 NVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHT 493
Query: 492 GQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQI 551
GQKLT E RVPYDK+KTH A LV ++YGISNWELFK CF REWLLMKRNSFVYVFKT QI
Sbjct: 494 GQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQI 553
Query: 552 TIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQR 611
TIMS+I TVYLRT+M G + DG KFYGA+FFSL+NVMFNG+AELA T++RLP FYKQR
Sbjct: 554 TIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQR 613
Query: 612 DFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMG 671
DFLF+P WAFALP W+L+IPLSL+ES IWI LTYYTIGFAPSA RFFRQLLA+F V+QM
Sbjct: 614 DFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMA 673
Query: 672 LSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNA 731
LSLFRF+ A+ RT+V++N++GTFTLL+VF LGGFI+AKDDI+PWM W YY+SPM YGQ A
Sbjct: 674 LSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTA 733
Query: 732 IVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLC 791
IV+NEFLDERWS+PN ++ TVG+ LLK+RG +TE + FWICIVALLGFSL FNL
Sbjct: 734 IVMNEFLDERWSSPN-YDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLF 792
Query: 792 FIAALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAV 851
+I AL YL+P +K+ ++E GK K++ + + +
Sbjct: 793 YILALMYLNPLGNSKATVVEE---GKDKQKGENRGTEG------------------SVVE 831
Query: 852 MNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSG 911
+N+ N ++GMVLPFQPLSLAF++VNY+VDMP+EMK+QG+E +RLQLL+DV G
Sbjct: 832 LNSSSNK-----GPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGG 886
Query: 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQN 971
AFRPG+LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK Q TFAR+SGYCEQN
Sbjct: 887 AFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQN 946
Query: 972 DIHSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLS 1024
DIHSP+VT+YESL+YSAWLRL D +FVEEVMELVE+K LRNS+VGLPGVDGLS
Sbjct: 947 DIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLS 1006
Query: 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1084
TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI
Sbjct: 1007 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1066
Query: 1085 DIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSN 1144
DIFE+FDEL LMKRGG VIYAG LG S KLVEYFEAV GVPKI DGYNPATW+L+V++
Sbjct: 1067 DIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTP 1126
Query: 1145 AVETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWK 1204
++E+Q+++DFA I+++S LYRRNQ+LIK+LS+P PGSKD+YF TKY+Q F TQ K CFWK
Sbjct: 1127 SMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWK 1186
Query: 1205 QHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGAS 1264
Q+WSYWR+P+YNAIRF +T VIG LFG+IFW G KT EQDL N GAMY+AVLFLGA
Sbjct: 1187 QYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGAL 1246
Query: 1265 NASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFH 1324
NA++V +AIERTVFYRE+AAGMYS++ YA +QV++E +Y +IQT VY+L+LYSMIG +
Sbjct: 1247 NAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCN 1306
Query: 1325 WEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQ 1384
W + KFLWFY++ML F+YFTLYGMML+ALTPN QIA I MSFFLS WNLFSGF++PR Q
Sbjct: 1307 WTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQ 1366
Query: 1385 IPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGA 1444
IPIWWRWYYWA+PVAWT+YGL+TSQ+GDK S V ++G I +K L + +G+++DFL
Sbjct: 1367 IPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGDIDLKTLLKEGFGFEHDFLPV 1426
Query: 1445 VAAAHIGFVVLFFFVFVYGIKFLNFQRR 1472
VA HI +++LF FVF YGIKFLNFQRR
Sbjct: 1427 VAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC87|AB34G_ARATH ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2147 bits (5564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1022/1470 (69%), Positives = 1210/1470 (82%), Gaps = 38/1470 (2%)
Query: 15 RSMSRKGSFSSASKK---GWASASLREAWNNP-GDVFAKSGR-EEDEEELKWAAIERLPT 69
R+MS +GS S S + G AS S R+ + P DVF +S R EED+ EL+WAA+ERLPT
Sbjct: 10 RTMSGRGSLGSTSHRSLAGAASKSFRDVFAPPTDDVFGRSDRREEDDVELRWAALERLPT 69
Query: 70 YDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTD 129
YDR+RK ML + NG+IG E+VDV+ L ++KK+L+E ILK VEEDNEKFL RLRERTD
Sbjct: 70 YDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTD 129
Query: 130 RVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEIL 189
RVGIE+PKIEVR+ENLS+EGD +RALPTL N +LN IE +LG L PSKKRK+EIL
Sbjct: 130 RVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKKRKIEIL 189
Query: 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTC 249
D+SGI+KPSRMTLLLGPP SGKTTLLQAL+GK D +L++SGR+TYCGHE EFVPQ+TC
Sbjct: 190 KDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTC 249
Query: 250 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKAT 309
AYISQHDLH GEMTVRE+LDFSGRCLGVGTR++LL ELSRRE++AGIKPDPEIDAFMK+
Sbjct: 250 AYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSI 309
Query: 310 AMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMD 369
A+SG +TSL TDYVLK+LGLDICAD +VG+ MRRGISGGQ+KR+TTGEMLVGPA ALFMD
Sbjct: 310 AISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMD 369
Query: 370 EISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429
EISTGLDSSTTFQI +FMRQ+VHI DVTM+ISLLQPAPET++LFDDIILLSEG+IVYQG
Sbjct: 370 EISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGS 429
Query: 430 REYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTF 489
R+ VL+FFE +GF+CPERKG ADFLQEVTS+KDQ+QYW ++ PY YVSV +F F +F
Sbjct: 430 RDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSF 489
Query: 490 HVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTF 549
H GQ+L E RVPYDK+KTHPA LV ++YGISN +LFK CF REWLLMKRNSFVYVFKT
Sbjct: 490 HAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTV 549
Query: 550 QITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYK 609
QITIMS+IA TVY RT+M G + DG KFYGALFFSL+N+MFNGMAELA T++RLP F+K
Sbjct: 550 QITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFK 609
Query: 610 QRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQ 669
QRDFLF+P WAFALP ++L+IPLSL+ES IWI LTYYTIGFAPSA RFFRQLLA+F V+Q
Sbjct: 610 QRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQ 669
Query: 670 MGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQ 729
M LSLFRF+ A+ RT+V+AN+ GT LL+VFVLGGFI++KDDI W+ W YY SPM YGQ
Sbjct: 670 MALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQ 729
Query: 730 NAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFN 789
A+V+NEFLDERW +PN ++ TVG+ LLK+RG +TE + FWICI ALLGF++ FN
Sbjct: 730 TALVINEFLDERWGSPNNDT-RINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFN 788
Query: 790 LCFIAALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDM 849
C+I AL YL+P +K+ + GK K + SH+ +++ S+
Sbjct: 789 FCYIIALMYLNPLGNSKATTVVEE--GKDKHK-GSHSGTGGSVVELTSTSSH-------- 837
Query: 850 AVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDV 909
+KGMVLPFQPLSLAF++VNY+VDMPAEMK+QG+E +RLQLL+DV
Sbjct: 838 --------------GPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDV 883
Query: 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCE 969
GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY+EGSI+ISGYPK Q TFAR+SGYCE
Sbjct: 884 GGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCE 943
Query: 970 QNDIHSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDG 1022
QNDIHSP+VT+YESL+YSAWLRL D MFVEEVMELVE+K LRNS+VGLPGVDG
Sbjct: 944 QNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDG 1003
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 1004 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1063
Query: 1083 SIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVS 1142
SIDIFE+FDEL LMKRGG VIYAG LG S KLVEYFEA+ GVPKI+DGYNPATW+L+V+
Sbjct: 1064 SIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVT 1123
Query: 1143 SNAVETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCF 1202
+ ++E+Q++VDFA I+ +S + RRNQ+LIKELS+P PGS DLYF TKY+Q F TQ K CF
Sbjct: 1124 TPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACF 1183
Query: 1203 WKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLG 1262
WK +WS WR P+YNAIRF +T VIG LFG++FW G K KEQDL N GAMY+AVLFLG
Sbjct: 1184 WKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLG 1243
Query: 1263 ASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIG 1322
A+NA++V VAIERTVFYRE+AAGMYS++ YA +QV++E +Y +IQT VY+L+LYSMIG
Sbjct: 1244 ATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIG 1303
Query: 1323 FHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPR 1382
+ W V KF WFY++ML CF+YFTLYGMMLVALTPN QIA I +SFFLSFWNLFSGF++PR
Sbjct: 1304 YDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPR 1363
Query: 1383 TQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFL 1442
QIPIWWRWYYWASPVAWT+YG++TSQ+GD+ S V + G +++K L +G+DYDFL
Sbjct: 1364 PQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGDMSLKTLLKNGFGFDYDFL 1423
Query: 1443 GAVAAAHIGFVVLFFFVFVYGIKFLNFQRR 1472
VA HI ++++F F F YGIKFLNFQRR
Sbjct: 1424 PVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1873 bits (4852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 902/1465 (61%), Positives = 1126/1465 (76%), Gaps = 52/1465 (3%)
Query: 20 KGSFSSASKKGWASASLREAWNNPG-DVFAKSGREEDEEE-LKWAAIERLPTYDRVRKTM 77
+GS S +G A+ W N G ++F++S R+ED+EE LKWAA+E+LPT+DR+RK +
Sbjct: 10 RGSSLRGSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGL 69
Query: 78 LKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPK 137
L + EVD+++LG Q++KNLLE ++KV +EDNEKFLL+L+ R DRVGI++P
Sbjct: 70 LF----GSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPT 125
Query: 138 IEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVK 197
IEVR+E+L+I+ DAYVG+R+LPT +N N +E +L L + S+KR+L IL D+SGI+K
Sbjct: 126 IEVRYEHLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIK 185
Query: 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDL 257
P RMTLLLGPP SGKTTLL AL+GK D +L+V+G+V+Y GHEL EFVPQRT AYISQHDL
Sbjct: 186 PCRMTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDL 245
Query: 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTS 317
H GEMTVRETL+FS RC GVG+RFE+LAELSRREK A IKPD +ID +MKA A G + +
Sbjct: 246 HIGEMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEAN 305
Query: 318 LGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDS 377
+ TDYVLKILGLDICAD MVG++M RGISGGQKKRVTTGEMLVGP+KALFMDEISTGLDS
Sbjct: 306 VVTDYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDS 365
Query: 378 STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFF 437
STT+ IV +RQ V I T +ISLLQPAPETY+LFDDIILLS+G IVYQGPR+ VL+FF
Sbjct: 366 STTYSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFF 425
Query: 438 ESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTD 497
ES+GF+CP+RKG ADFLQEVTS+KDQQQYW K+NEPYR+++ EF E +++FHVG+KL D
Sbjct: 426 ESMGFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGD 485
Query: 498 ELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSII 557
EL P+DK+K HPA L ++YGI EL K C RE LLMKRNSFVY+FK Q+TIM++I
Sbjct: 486 ELATPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALI 545
Query: 558 AFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFP 617
T++ RT+M DGG + GALFF ++ +MFNGM+ELA+TI +LP FYKQRD LFFP
Sbjct: 546 TMTLFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFP 605
Query: 618 AWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRF 677
+WA+A+P W+L+IP++L+E +W++LTYY IGF P+ TRF +Q L V+QM +FRF
Sbjct: 606 SWAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRF 665
Query: 678 IAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEF 737
I AV RT VA+T G+F LLL F LGGF++++DD+K W IWGY++SPM Y N+I++NEF
Sbjct: 666 IGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEF 725
Query: 738 LDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALT 797
++W+ P T+G ++K+RG + E + +WI + AL+GF++ FN C+ AL
Sbjct: 726 DGKKWNHIVPG----GNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALA 781
Query: 798 YLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDN 857
YL+PF + ++V+ E + + N + + D +
Sbjct: 782 YLNPFDKPQAVLPEDGENAE-----NGEVSSQITSTDGG--------------------D 816
Query: 858 SIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGV 917
SI + + +KGMVLPF+P S+ FD V Y VDMP EMK QG E+RL LL+ VSGAFRPGV
Sbjct: 817 SISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGV 876
Query: 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPN 977
LTAL+GVSGAGKTTLMDVLAGRKTGGYI+G I ISGYPKKQETFARISGYCEQNDIHSP
Sbjct: 877 LTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPY 936
Query: 978 VTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR 1030
VT+YESL+YSAWLRLP+D MFV+EVMELVE+ LR++LVGLPGV+GLSTEQRKR
Sbjct: 937 VTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKR 996
Query: 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1090
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF
Sbjct: 997 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1056
Query: 1091 DELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQL 1150
DELFLMKRGG IY GPLGR S L++YFE+ PGV KI++GYNPATW+LEV+++A E L
Sbjct: 1057 DELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMML 1116
Query: 1151 NVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYW 1210
+DF +Y +SDLYRRN+ LI EL P PGSKDL+F T+YSQ F TQC C WKQHWSYW
Sbjct: 1117 GIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYW 1176
Query: 1211 RNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVT 1270
RNP Y A+RF TT I +FG +FWD G K SK QDL+N +G+MY+AVLFLG NASSV
Sbjct: 1177 RNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQ 1236
Query: 1271 SVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKF 1330
VVAIERTVFYRERAAGMYS++ YAF QVSIE Y+ +Q++ Y +++Y+MIGF W+V KF
Sbjct: 1237 PVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKF 1296
Query: 1331 LWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWR 1390
W+ F M +YFT YGMM VA+TPNQ +A+I+ +FF WNLFSGF++PR ++P+WWR
Sbjct: 1297 FWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWR 1356
Query: 1391 WYYWASPVAWTIYGLVTSQIGD---KVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAA 1447
WYYWA+PVAWT+YGLV SQ GD K+S+ E TV+++L +++G+ +DFLG VAA
Sbjct: 1357 WYYWANPVAWTLYGLVASQFGDIQTKLSDNE-------TVEQFLRRYFGFKHDFLGVVAA 1409
Query: 1448 AHIGFVVLFFFVFVYGIKFLNFQRR 1472
+V +F F F + IK NFQRR
Sbjct: 1410 VLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8GU86|PDR5_ORYSJ Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1835 bits (4754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1475 (59%), Positives = 1126/1475 (76%), Gaps = 55/1475 (3%)
Query: 25 SASKKGWAS---ASLREAWNNPGDVFAKSGRE------EDEEELKWAAIERLPTYDRVRK 75
S S++ W S ASL + + D F +S +DEE L+WAA+E+LPTYDR+R+
Sbjct: 8 SGSRRSWLSSGAASLARSLRDGDDPFRRSAAASRRDAGDDEENLRWAALEKLPTYDRMRR 67
Query: 76 TMLKHVLEN--------GRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRER 127
+L+ ++ +EVD++ L ++ + L+E + K VE+DNE+FL R R+R
Sbjct: 68 GILRKAVDGGGDGEGAGSLFKADEVDIANLDPREGRELMERVFKAVEDDNERFLRRFRDR 127
Query: 128 TDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLE 187
D+VGIE+PKIEVR+++L IE D +VG RALPTLLN ++N +EG++ S KRKL+
Sbjct: 128 LDQVGIELPKIEVRYQHLDIEADVHVGKRALPTLLNATINTLEGLVSLF--ISSNKRKLK 185
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL+DV+GI+KPSRMTLLLGPP SGK+TL++AL+GK DK+L+VSG +TYCGH EF P+R
Sbjct: 186 ILNDVNGIIKPSRMTLLLGPPSSGKSTLMRALTGKPDKNLKVSGEITYCGHTFKEFYPER 245
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
T AY+SQHDLH+ EMTVRETLDFS RCLG G R+++L+EL+RRE++AGIKPDPEIDA MK
Sbjct: 246 TSAYVSQHDLHNPEMTVRETLDFSRRCLGSGARYDMLSELTRRERNAGIKPDPEIDALMK 305
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
AT + G + ++ TD VLK LGLDICAD +VG M RGISGGQKKRVTTGEML GPA ALF
Sbjct: 306 ATVVEGKQNNIVTDLVLKALGLDICADTIVGGAMIRGISGGQKKRVTTGEMLTGPATALF 365
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
MDEISTGLDSS+TFQIV+++RQ+ H+ + T+++SLLQP PETY LFDDI+L++EG IVY
Sbjct: 366 MDEISTGLDSSSTFQIVKYIRQVTHVMNATVMMSLLQPPPETYALFDDIVLIAEGYIVYH 425
Query: 428 GPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFK 487
GPRE +L+FFES GFRCPERKG ADFLQEVTSRKDQQQYW + + YRYVSV EF ++FK
Sbjct: 426 GPRENILEFFESAGFRCPERKGVADFLQEVTSRKDQQQYWFLEQDHYRYVSVEEFAQNFK 485
Query: 488 TFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFK 547
FHVGQKL EL+VPYDKSKTHPA L K+YG+S+ E K +REWLLMKRNSF+++FK
Sbjct: 486 KFHVGQKLQKELQVPYDKSKTHPAALTTKKYGLSSLESLKAVMSREWLLMKRNSFLFIFK 545
Query: 548 TFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAF 607
FQ+ ++ I T++LRT+M + + D K+ GAL SL+ +MFNG EL LTI +LP F
Sbjct: 546 AFQLFVLGFITMTLFLRTKMPHEKFSDTSKYVGALTASLITIMFNGFGELQLTIDKLPIF 605
Query: 608 YKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSV 667
YKQRDFLFFPAW + L +L++PLSLMESS+WI+LTYY +GFAP+A RFF+Q LA+F
Sbjct: 606 YKQRDFLFFPAWTYGLANIILKVPLSLMESSLWIVLTYYVVGFAPAAGRFFKQFLAYFWT 665
Query: 668 HQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSY 727
HQM L+LFR + A+ R+ VVANT G F LLL+F+ GGF+V++ DIKPW IWGY+ SPM Y
Sbjct: 666 HQMALALFRLLGAILRSMVVANTFGMFVLLLIFLFGGFLVSRKDIKPWWIWGYWTSPMMY 725
Query: 728 GQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLF 787
NA+ +NEFL RW+ PN + PT+GKA L+++G +T + +W+ I A++GF +
Sbjct: 726 SNNALSVNEFLASRWAIPNNDS-SISAPTIGKAFLQSKGYFTGEWGYWLSIGAMIGFMIV 784
Query: 788 FNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGI 847
FN+ ++ ALT+L P +V+ +D KS+ ++ S+ +Q
Sbjct: 785 FNILYLCALTFLRPIGSASTVV--SDDDTKSELEAESNQEQ------------------- 823
Query: 848 DMAVMNTPDNSIIGATSTR--KGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQL 905
M+ N G + R +GMVLPFQPLSL+F+H+NY+VDMPAEMK+QG E+RLQL
Sbjct: 824 ----MSEVINGTNGTENRRSQRGMVLPFQPLSLSFNHMNYYVDMPAEMKAQGFTESRLQL 879
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L D+SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT G IEG I +SGYPKKQETFARIS
Sbjct: 880 LSDISGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTSGTIEGDIKLSGYPKKQETFARIS 939
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLRLP-------KDMFVEEVMELVEMKALRNSLVGLP 1018
GYCEQ DIHSPN+T+YES++YSAWLRL + +FVEEVM LVE+ LR++LVGLP
Sbjct: 940 GYCEQTDIHSPNLTVYESIVYSAWLRLSSEVDKNTRKVFVEEVMSLVELDVLRDALVGLP 999
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
GV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCT
Sbjct: 1000 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCT 1059
Query: 1079 IHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWV 1138
IHQPSIDIFE+FDEL L+KRGG VIYAG LG S LVEYFEA+PGVPKI +GYNPATW+
Sbjct: 1060 IHQPSIDIFESFDELLLLKRGGRVIYAGQLGLHSQILVEYFEAIPGVPKITEGYNPATWM 1119
Query: 1139 LEVSSNAVETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQC 1198
LEVSS+ E +L++DFA +YA+S LYR NQ+LIK+LS P PG +DL F TKYSQ+F+ QC
Sbjct: 1120 LEVSSSLAEARLDIDFAEVYANSALYRSNQELIKQLSVPPPGFQDLSFPTKYSQNFLNQC 1179
Query: 1199 KTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAV 1258
WKQ SYW++P YNA+R+ +T + G +FG +FW +G+ DL NLLGA Y+AV
Sbjct: 1180 VANTWKQFQSYWKDPPYNAMRYVMTLLYGLVFGTVFWRRGKNIESVNDLNNLLGATYAAV 1239
Query: 1259 LFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLY 1318
FLGA+N ++ VV++ERTVFYRE+AAGMYS L+YAFAQ +E Y ++Q ++Y++L+Y
Sbjct: 1240 FFLGAANLLTLLPVVSVERTVFYREKAAGMYSPLSYAFAQGFVEFCYSAVQGVLYTILIY 1299
Query: 1319 SMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGF 1378
SMIG+ W+ KF +F FFM+ F YFTL+ MMLVA T ++ +A +L+SF LS WN F+GF
Sbjct: 1300 SMIGYEWKADKFFYFLFFMIAAFAYFTLFSMMLVACTASEMLAAVLVSFVLSSWNNFAGF 1359
Query: 1379 MVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGES-GITVKEYLYKHYGY 1437
++PR IP+WWRW+YWA+PV+WTIYG++ SQ D V V G+S + VK++L K+ G+
Sbjct: 1360 IIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVPGQSTTMVVKDFLEKNMGF 1419
Query: 1438 DYDFLGAVAAAHIGFVVLFFFVFVYGIKFLNFQRR 1472
+DFLG V AH G+V++FFF+F YGIK LNFQ+R
Sbjct: 1420 KHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR 1454
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1827 bits (4733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1457 (60%), Positives = 1114/1457 (76%), Gaps = 33/1457 (2%)
Query: 34 ASLREA---WNNPGDVFAKSG-----REEDEEELKWAAIERLPTYDRVRKTMLKHVLENG 85
ASLR W + GDVF++S ++DEE L+WAA+ERLPTYDRVR+ +L E+G
Sbjct: 9 ASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 86 RIGYE--EVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFE 143
G E EVDV LG ++ + L+E +++ ++D+E+FLL+LRER DRVGI+ P IEVRFE
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 144 NLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTL 203
NL +E D +VG R LPTLLN+ N +E + L + P+KK+ + +LHDVSGI+KP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 204 LLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263
LLGPPGSGKTTLL AL+GK DK L+VSG+VTY GH + EFVP+RT AYISQHDLH GEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYV 323
VRETL FS RC GVGTR+E+L EL+RREK A IKPD +ID +MKA+AM G ++S+ TDY+
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 324 LKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQI 383
LKILGLDICAD +VGNEM RGISGGQ+KRVTTGEMLVGPA+ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 384 VRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFR 443
V +RQ +HI T +ISLLQPAPETY+LFDDIILLS+G++VYQGPRE+VL+FFE +GFR
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 444 CPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPY 503
CP RKG ADFLQEVTSRKDQ QYWC+++ PYR+V V +F + F++FHVG+ + +EL P+
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 504 DKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYL 563
D++++HPA L +YG+S EL K RE LLMKRN+F+Y+FK +T+M++I T +
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 564 RTQMTYGQLIDGGKFY-GALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFA 622
RT M + + D G Y GAL+F+L VMFNG AELA+T+++LP F+KQRD LFFPAWA+
Sbjct: 549 RTSMRHDR--DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYT 606
Query: 623 LPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVS 682
+P W+L+IP++ +E +++ +TYY IGF PS +RFF+Q L +++QM +LFRFIA +
Sbjct: 607 IPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIG 666
Query: 683 RTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERW 742
R VV++T G +LL LGGFI+A+ D+K W IWGY++SP+SY QNAI NEFL W
Sbjct: 667 RDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSW 726
Query: 743 SAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPF 802
S P + T+G ++LK+RG++TE +WI + ALLG++L FNL + AL+ L PF
Sbjct: 727 SQILPG----ENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPF 782
Query: 803 KETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGA 862
++ + M E + K+ +++ + S E +A N+ NS +
Sbjct: 783 TDSHASMSE-----DALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINS-ADS 836
Query: 863 TSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALV 922
+++RKGMVLPF PLS++F+ V Y VDMP MK+QGI E+RL LL+ VSG+FRPGVLTAL+
Sbjct: 837 SASRKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALM 896
Query: 923 GVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982
GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKKQETFARISGYCEQNDIHSP+VT+YE
Sbjct: 897 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYE 956
Query: 983 SLLYSAWLRLP-------KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAV 1035
SL++SAWLRLP + MF+EEVM+LVE+ +LR +LVGLPGV GLSTEQRKRLTIAV
Sbjct: 957 SLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAV 1016
Query: 1036 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1095
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 1017 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1076
Query: 1096 MKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFA 1155
MKRGG IY GP+G+ S KL+EYFE + GV +I+DGYNPATW+LEV+S+A E L VDF+
Sbjct: 1077 MKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFS 1136
Query: 1156 AIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKY 1215
IY S+LY+RN++LI+ELS+P PGS DL F T+YS+ FITQC C WKQ+WSYWRNP Y
Sbjct: 1137 EIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSY 1196
Query: 1216 NAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAI 1275
A+R T VI +FG +FW+ G +T K+QDL N +G+MY+AVL++G N+ SV VV +
Sbjct: 1197 TAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVV 1256
Query: 1276 ERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYF 1335
ERTVFYRERAAGMYS+ YAF QV+IE Y+ +QT++Y +L+YSMIGF W V KFLW+ F
Sbjct: 1257 ERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLF 1316
Query: 1336 FMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWA 1395
FM +YFT YGMM V LTPN+ IA I+ S F + WNLFSG+++PR +IP+WWRWY W
Sbjct: 1317 FMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWI 1376
Query: 1396 SPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVL 1455
PVAWT+YGLV SQ GD +E G++ TV +++ ++G+ ++FL VA H+ F V
Sbjct: 1377 CPVAWTLYGLVASQFGDIQHVLE--GDTR-TVAQFVTDYFGFHHNFLWVVAVVHVVFAVT 1433
Query: 1456 FFFVFVYGIKFLNFQRR 1472
F F+F + I NFQRR
Sbjct: 1434 FAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1813 bits (4695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 896/1464 (61%), Positives = 1108/1464 (75%), Gaps = 34/1464 (2%)
Query: 19 RKGSFSSASKKGWASASLREAWNNPGDVFAKSGREEDEEE-LKWAAIERLPTYDRVRKTM 77
R GS +S +AS + D F +S REED+EE LKWAAIE+LPTYDR+RK +
Sbjct: 5 RMGSVASGGGSVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGI 64
Query: 78 LKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPK 137
L G EEVD+ LG+Q+++NL+E +++ EEDNE+FLL+LR+R +RVGI+ P
Sbjct: 65 LTAG------GVEEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPT 118
Query: 138 IEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVK 197
IEVRFENLSI+ +AYVG R +PT N N I VL +R+ S KR + ILHD+SGI++
Sbjct: 119 IEVRFENLSIDAEAYVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIR 178
Query: 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDL 257
P RM+LLLGPPGSGKT+LL AL+GK D +L+VSGRVTY GH++ EFVPQRT AYI QHDL
Sbjct: 179 PGRMSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDL 238
Query: 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTS 317
H GEMTVRETL FS RC GVGTR+++L ELSRREK+A IKPDP+ID +MKA ++ G + S
Sbjct: 239 HIGEMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEG-QES 297
Query: 318 LGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDS 377
+ TDY+LKILGL+ICAD MVG+ M RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDS
Sbjct: 298 VVTDYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDS 357
Query: 378 STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFF 437
STT+QIV +RQ VHI T +I+LLQPAPETYDLFDDI+LLSEG+IVYQGPRE +L+FF
Sbjct: 358 STTYQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFF 417
Query: 438 ESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTD 497
E++GF+CPERKG ADFLQEVTSRKDQ QYWC+++EPYRY+SV +F E FK FHVG+ L
Sbjct: 418 EAMGFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGS 477
Query: 498 ELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSII 557
ELRVP+D+++ HPA L RYGIS EL K CF+REWLLMKRNSFVY+FK Q+ I+ I
Sbjct: 478 ELRVPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSI 537
Query: 558 AFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFP 617
TV+LRT+M + DG F GA+F LV +FNG AELA++I +LP FYKQRD LF+P
Sbjct: 538 GMTVFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYP 597
Query: 618 AWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRF 677
+WA+ALP WVL+IP+S +E ++WI +TYY +GF P+ RFFR + + QM LFR
Sbjct: 598 SWAYALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRL 657
Query: 678 IAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEF 737
+AA+ R VVA+T G+F L++ VLGGF++++++IK W IWGY+ SP+ Y QNAI +NEF
Sbjct: 658 LAALGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEF 717
Query: 738 LDERWS-APNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAAL 796
L W+ +P + T+G +LK RG++ + + +WI + ALLG+ + FN+ FI L
Sbjct: 718 LGHSWNKVVDPTQ---SNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFL 774
Query: 797 TYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAAD-MSPPSTAPLFEGIDMAVMNTP 855
+LDP + ++V+ E K ++ + + D + PS A N
Sbjct: 775 EWLDPLGKGQAVVSEEELREKHVNRTGENVELLTLGTDSQNSPSDA-----------NAG 823
Query: 856 DNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRP 915
I GA + ++GMVLPF PLS+ FD++ Y VDMP EMK +G+ E+RL LL+ VSGAFRP
Sbjct: 824 RGEITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRP 883
Query: 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS 975
GVLTAL+GVSGAGKTTLMDVLAGRKTGGYIEG ISISGYPKKQETFARI+GYCEQNDIHS
Sbjct: 884 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHS 943
Query: 976 PNVTIYESLLYSAWLRLP-------KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028
P+VT+YESLLYSAWLRLP + MFVEEVMELVE+ +LR +LVGLPGV+GLSTEQR
Sbjct: 944 PHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQR 1003
Query: 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1088
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE
Sbjct: 1004 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1063
Query: 1089 AFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVET 1148
AFDELFLMKRGG IY GPLG S L+ YFE + GV KI+DGYNPATW+LEV++ A E
Sbjct: 1064 AFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQED 1123
Query: 1149 QLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWS 1208
L ++FA +Y +SDLY+RN+ LI ELS+P PGS DL+F T++SQ F TQC C WKQH S
Sbjct: 1124 ILGINFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKS 1183
Query: 1209 YWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASS 1268
YWRNP Y A R F TTVI +FG IF + G+K +K DL N LG+MY+AVLF+G N +
Sbjct: 1184 YWRNPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQT 1243
Query: 1269 VTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVT 1328
V +V +ERTVFYRE+AAGMYS+L YAFAQV IE ++ +QT+VY L++YS+IGF W V
Sbjct: 1244 VQPIVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVE 1303
Query: 1329 KFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIW 1388
KF W+ FFM FMYFT YGMM VA+TPN IA I+ + F WN+F+GF++PR +IPIW
Sbjct: 1304 KFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIW 1363
Query: 1389 WRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAA 1448
WRWY WA PVAWT+YGLV SQ GD + E G V++Y+ +++G+ +D+LG VA A
Sbjct: 1364 WRWYSWACPVAWTLYGLVASQYGDITNSTL---EDGEVVQDYIRRYFGFRHDYLGYVATA 1420
Query: 1449 HIGFVVLFFFVFVYGIKFLNFQRR 1472
+GF LF FVF + IK NFQRR
Sbjct: 1421 VVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1800 bits (4662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1444 (60%), Positives = 1093/1444 (75%), Gaps = 24/1444 (1%)
Query: 40 WNNPGDVFAKSGREEDEEE-LKWAAIERLPTYDRVRKTML---KHVLENGRIGYEEVDVS 95
W DVF++S REED+EE L+WAA+E+LPTYDRVR+ +L G VDV
Sbjct: 27 WRRGDDVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVH 86
Query: 96 ELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGT 155
LG ++++ LLE +++V +EDNEKFLL+L++R DRVGI++P IEVRFE+L E + VG
Sbjct: 87 GLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVGN 146
Query: 156 RALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTL 215
LPT+LN+ N +E L + P++K+ + +LHDVSGI+KP RMTLLLGPPGSGKTTL
Sbjct: 147 SGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTTL 206
Query: 216 LQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 275
L AL+G+ K L+ SG+VTY GH + EFVP+RT AYISQHDLH GEMTVRETL FS RC
Sbjct: 207 LLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQ 266
Query: 276 GVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADI 335
GVG+RF++L ELSRREK A IKPD +IDAFMKA AM G + ++ TDY+LKILGL+ICAD
Sbjct: 267 GVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADT 326
Query: 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395
MVG+EM RGISGGQ+KRVTTGEMLVGPA+ALFMDEISTGLDSSTTFQIV +RQ VHI
Sbjct: 327 MVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILG 386
Query: 396 VTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQ 455
T +ISLLQPAPETY+LFDDIILLS+G+IVYQGPRE VL+FFES+GF+CP+RKG ADFLQ
Sbjct: 387 GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFLQ 446
Query: 456 EVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVK 515
EVTS+KDQ+QYW + ++PYR+V+V EFV F++FH G+ + +EL VP+DKSK+HPA L
Sbjct: 447 EVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALAT 506
Query: 516 KRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDG 575
RYG EL K RE LLMKRNSFVY+F+TFQ+ ++S+IA T++ RT+M + G
Sbjct: 507 TRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSG 566
Query: 576 GKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLM 635
G + GALFF ++ +MFNG +ELALT+ +LP F+KQRD LF+PAW++ +P W+L+IP++ +
Sbjct: 567 GIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFI 626
Query: 636 ESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFT 695
E ++ LTYY IGF + FF+Q L +++QM SLFRFI +R +VAN +F
Sbjct: 627 EVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFM 686
Query: 696 LLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEP 755
LL+ VLGGFI+A++ +K W IWGY++SPM Y QNAI +NE + W+ +
Sbjct: 687 LLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSS--ASNE 744
Query: 756 TVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDG 815
T+G +LK+RG++ E +WI A++GF++ FN F ALTYL P+ ++ + E
Sbjct: 745 TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEE-- 802
Query: 816 GKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQP 875
+K++N + + S + P+ G + D++ + T++GMVLPF P
Sbjct: 803 -LKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEV----TQRGMVLPFTP 857
Query: 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDV 935
LSL+FD+V Y VDMP EMK+QG+ ++RL+LL+ VSG+FRPGVLTAL+GVSGAGKTTLMDV
Sbjct: 858 LSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDV 917
Query: 936 LAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD 995
LAGRKTGGYIEGSI+ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLL+SAWLRLP+D
Sbjct: 918 LAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPED 977
Query: 996 -------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048
MF+EEVMELVE+K+LR++LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 978 VDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1037
Query: 1049 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108
PTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG IYAGPL
Sbjct: 1038 PTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPL 1097
Query: 1109 GRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRNQ 1168
G S +L++YFE++PGV KI+DGYNPATW+LEV++ E L VDF+ IY S+LY+RN+
Sbjct: 1098 GHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNK 1157
Query: 1169 QLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGA 1228
LIK+LS PAP S DLYF T+YSQ +TQC C WKQ+ SYWRNP YNA+RFF TTVI
Sbjct: 1158 ALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIAL 1217
Query: 1229 LFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGM 1288
LFG IFWD G K +K QDL N +G+MY+AVLF+G N +SV VVA+ERTVFYRERAAGM
Sbjct: 1218 LFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGM 1277
Query: 1289 YSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYG 1348
YS+ YAF QV IE Y +Q VY +++Y+MIGF W KF W+ FFM+ +YFT YG
Sbjct: 1278 YSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYG 1337
Query: 1349 MMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTS 1408
MM V LTPN IA+I+ S F + WNLFSGF++PR ++PIWWRWY WA PVAWT+YGLV S
Sbjct: 1338 MMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVS 1397
Query: 1409 QIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLN 1468
Q GD +E E G VK ++ ++G+ + +LG VA F LF +F + I N
Sbjct: 1398 QFGD----IETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFN 1453
Query: 1469 FQRR 1472
FQ+R
Sbjct: 1454 FQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1800 bits (4662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1444 (60%), Positives = 1092/1444 (75%), Gaps = 24/1444 (1%)
Query: 40 WNNPGDVFAKSGREEDEEE-LKWAAIERLPTYDRVRKTML---KHVLENGRIGYEEVDVS 95
W DVF++S REED+EE L+WAA+E+LPTYDRVR+ +L G VDV
Sbjct: 27 WRRGDDVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVH 86
Query: 96 ELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGT 155
LG ++++ LLE +++V +EDNEKFLL+L++R DRVGI++P IEVRFE+L E + VG
Sbjct: 87 GLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVGN 146
Query: 156 RALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTL 215
LPT+LN+ N +E L + P++K+ + +LHDVSGI+KP RMTLLLGPPGSGKTTL
Sbjct: 147 SGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTTL 206
Query: 216 LQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 275
L AL+G+ K L+ SG+VTY GH + EFVP+RT AYISQHDLH GEMTVRETL FS RC
Sbjct: 207 LLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQ 266
Query: 276 GVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADI 335
GVG+RF++L ELSRREK A IKPD +IDAFMKA AM G + ++ TDY+LKILGL+ICAD
Sbjct: 267 GVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADT 326
Query: 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395
MVG+EM RGISGGQ+KRVTTGEMLVGPA+ALFMDEISTGLDSSTTFQIV +RQ VHI
Sbjct: 327 MVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILG 386
Query: 396 VTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQ 455
T +ISLLQPAPETY+LFDDIILLS+G+IVYQGPRE VL+FFES GF+CP+RKG ADFLQ
Sbjct: 387 GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVADFLQ 446
Query: 456 EVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVK 515
EVTS+KDQ+QYW + ++PYR+V+V EFV F++FH G+ + +EL VP+DKSK+HPA L
Sbjct: 447 EVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALAT 506
Query: 516 KRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDG 575
RYG EL K RE LLMKRNSFVY+F+TFQ+ ++S+IA T++ RT+M + G
Sbjct: 507 TRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSG 566
Query: 576 GKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLM 635
G + GALFF ++ +MFNG +ELALT+ +LP F+KQRD LF+PAW++ +P W+L+IP++ +
Sbjct: 567 GIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFI 626
Query: 636 ESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFT 695
E ++ LTYY IGF + FF+Q L +++QM SLFRFI +R +VAN +F
Sbjct: 627 EVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFM 686
Query: 696 LLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEP 755
LL+ VLGGFI+A++ +K W IWGY++SPM Y QNAI +NE + W+ +
Sbjct: 687 LLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSS--ASNE 744
Query: 756 TVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDG 815
T+G +LK+RG++ E +WI A++GF++ FN F ALTYL P+ ++ + E
Sbjct: 745 TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEE-- 802
Query: 816 GKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQP 875
+K++N + + S + P+ G + D++ + T++GMVLPF P
Sbjct: 803 -LKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEV----TQRGMVLPFTP 857
Query: 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDV 935
LSL+FD+V Y VDMP EMK+QG+ ++RL+LL+ VSG+FRPGVLTAL+GVSGAGKTTLMDV
Sbjct: 858 LSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDV 917
Query: 936 LAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD 995
LAGRKTGGYIEGSI+ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLL+SAWLRLP+D
Sbjct: 918 LAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPED 977
Query: 996 -------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048
MF+EEVMELVE+K+LR++LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 978 VDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1037
Query: 1049 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108
PTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG IYAGPL
Sbjct: 1038 PTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPL 1097
Query: 1109 GRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRNQ 1168
G S +L++YFE++PGV KI+DGYNPATW+LEV++ E L VDF+ IY S+LY+RN+
Sbjct: 1098 GHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNK 1157
Query: 1169 QLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGA 1228
LIK+LS PAP S DLYF T+YSQ +TQC C WKQ+ SYWRNP YNA+RFF TTVI
Sbjct: 1158 ALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIAL 1217
Query: 1229 LFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGM 1288
LFG IFWD G K +K QDL N +G+MY+AVLF+G N +SV VVA+ERTVFYRERAAGM
Sbjct: 1218 LFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGM 1277
Query: 1289 YSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYG 1348
YS+ YAF QV IE Y +Q VY +++Y+MIGF W KF W+ FFM+ +YFT YG
Sbjct: 1278 YSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYG 1337
Query: 1349 MMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTS 1408
MM V LTPN IA+I+ S F + WNLFSGF++PR ++PIWWRWY WA PVAWT+YGLV S
Sbjct: 1338 MMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVS 1397
Query: 1409 QIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLN 1468
Q GD +E E G VK ++ ++G+ + +LG VA F LF +F + I N
Sbjct: 1398 QFGD----IETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFN 1453
Query: 1469 FQRR 1472
FQ+R
Sbjct: 1454 FQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1783 bits (4617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 890/1469 (60%), Positives = 1118/1469 (76%), Gaps = 58/1469 (3%)
Query: 20 KGSFSSASKKGWASASLREA----W-NNPGDVFAKSGREEDEEE-LKWAAIERLPTYDRV 73
+G AS +G S+RE W NN +VF++S R+ED+EE LKWAA+E+LPTYDR+
Sbjct: 10 RGRSLRASIRGSMRGSIRENSNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRL 69
Query: 74 RKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGI 133
RK +L + EVDV + G+ ++KNLLE ++KV +EDNEKFLL+L+ R DRVGI
Sbjct: 70 RK----GILFGSQGAAAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGI 125
Query: 134 EIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVS 193
+ P IEVRFE+L+I+ DAYVG+RALPT N N +EG+L + + PSKKR++ IL DVS
Sbjct: 126 DFPSIEVRFEHLNIDADAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVS 185
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
GIVKP RMTLLLGPPGSGKTTLL AL+GK D +L+V+G+VTY GHEL EFVPQRT AYIS
Sbjct: 186 GIVKPCRMTLLLGPPGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYIS 245
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
QHDLH GEMTVRETL+FS RC GVG+R+E+LAELSRREK A IKPD +ID FMKA + G
Sbjct: 246 QHDLHIGEMTVRETLEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEG 305
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
+ + TDY+LKILGLDICAD MVG++M RGISGGQKKRVTTGEM+VGP+KALFMDEIST
Sbjct: 306 QEAKVVTDYILKILGLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEIST 365
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYV 433
GLDSSTT+ IV ++Q V I T +ISLLQPAPETY+LFDDIILLS+G IVY+GPRE V
Sbjct: 366 GLDSSTTYSIVNSLKQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEV 425
Query: 434 LDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQ 493
L+FFES+GF+CPERKGAADFLQEVTS+KDQQQYW +++EPYR+++ EF E +++FHVG+
Sbjct: 426 LEFFESMGFKCPERKGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGR 485
Query: 494 KLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITI 553
K++DEL+ +DKSK+HPA L ++YGI +L K C RE LLM+RNSFVY+FK FQ+ I
Sbjct: 486 KVSDELKTTFDKSKSHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLI 545
Query: 554 MSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDF 613
++++ T++ RT+M DGG + GALFF ++ +MFNG++EL +T+ +LP FYKQRDF
Sbjct: 546 IALMTMTIFFRTKMPRDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDF 605
Query: 614 LFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLS 673
LF+P+WA+A+P W+L+IP++ E +W+ LTYY +GF P+ RFF+Q L V+QM +
Sbjct: 606 LFYPSWAYAIPSWILKIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASA 665
Query: 674 LFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIV 733
LFRFIAAV RT VA+T G F LLL F LGGFI+A++D+K W IWGY+ SP+ Y NAI+
Sbjct: 666 LFRFIAAVGRTMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAIL 725
Query: 734 LNEFLDERWSAPNPARFLV---DEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNL 790
+NEF ++W + +V EP +G A+++ARG + + + +WI + AL GF + FN+
Sbjct: 726 VNEFDGQKW------KHIVAGGTEP-LGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNI 778
Query: 791 CFIAALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMA 850
+ AL YL+PF + ++ + + ++ +S+ + Q +A
Sbjct: 779 AYSVALAYLNPFDKPQATISDESENNESESSPQITSTQEGDSA----------------- 821
Query: 851 VMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVS 910
+ + +KGMVLPF P S+ FD V Y VDMP EM+ G +NRL LL+ VS
Sbjct: 822 -----------SENKKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVS 870
Query: 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQ 970
GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGYI+GSI ISGYPKKQ+TFARISGYCEQ
Sbjct: 871 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARISGYCEQ 930
Query: 971 NDIHSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGL 1023
NDIHSP VT++ESL+YSAWLRLP+D MFVEEVM+LVE+ LR++LVGLPGV+GL
Sbjct: 931 NDIHSPYVTVFESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLRSALVGLPGVNGL 990
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083
STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPS
Sbjct: 991 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPS 1050
Query: 1084 IDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSS 1143
IDIFEAFDELFLMKRGG IY GPLGRQS L++YFE++PGV KI +GYNPATW+LEV++
Sbjct: 1051 IDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWMLEVTA 1110
Query: 1144 NAVETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFW 1203
++ E L VDF +Y SDLYRRN+ LI ELS P PG+ DL+F +++SQ F TQC C W
Sbjct: 1111 SSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLW 1170
Query: 1204 KQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGA 1263
KQHWSYWRNP Y A+R TT I +FG +FWD G K S+ QDL+N +G+MY+AVLFLG
Sbjct: 1171 KQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGV 1230
Query: 1264 SNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGF 1323
N+SSV VV++ERTVFYRE+AAGMYS++ YAFAQV IE Y+ +Q VY L++YSMIGF
Sbjct: 1231 QNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGF 1290
Query: 1324 HWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRT 1383
W V KF W +FFM F+YFT +GMM VA+TPNQ +A+I+ FF + WNLFSGF+VPR
Sbjct: 1291 EWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRP 1350
Query: 1384 QIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLG 1443
+IPIWWRWYYW P+AWT+YGLV SQ GD + + TV+++L ++G+ +DFLG
Sbjct: 1351 RIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLT---DQNQTVEQFLRSNFGFKHDFLG 1407
Query: 1444 AVAAAHIGFVVLFFFVFVYGIKFLNFQRR 1472
VAA + F V+F F F GIK NFQRR
Sbjct: 1408 VVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1472 | ||||||
| 359486907 | 1449 | PREDICTED: pleiotropic drug resistance p | 0.970 | 0.986 | 0.769 | 0.0 | |
| 359486905 | 1442 | PREDICTED: pleiotropic drug resistance p | 0.966 | 0.986 | 0.768 | 0.0 | |
| 359486909 | 1437 | PREDICTED: pleiotropic drug resistance p | 0.963 | 0.986 | 0.768 | 0.0 | |
| 359486942 | 1447 | PREDICTED: pleiotropic drug resistance p | 0.964 | 0.981 | 0.767 | 0.0 | |
| 359486911 | 1438 | PREDICTED: pleiotropic drug resistance p | 0.963 | 0.986 | 0.763 | 0.0 | |
| 359481989 | 1434 | PREDICTED: pleiotropic drug resistance p | 0.949 | 0.974 | 0.770 | 0.0 | |
| 359486940 | 1425 | PREDICTED: pleiotropic drug resistance p | 0.947 | 0.978 | 0.769 | 0.0 | |
| 225449690 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.955 | 0.973 | 0.751 | 0.0 | |
| 147855195 | 1454 | hypothetical protein VITISV_006821 [Viti | 0.959 | 0.971 | 0.750 | 0.0 | |
| 356572530 | 1437 | PREDICTED: ABC transporter G family memb | 0.962 | 0.986 | 0.733 | 0.0 |
| >gi|359486907|ref|XP_002267345.2| PREDICTED: pleiotropic drug resistance protein 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2390 bits (6195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1129/1467 (76%), Positives = 1298/1467 (88%), Gaps = 38/1467 (2%)
Query: 15 RSMS-RKGSFSSASKKGWASASLREAWNNPGDVFAKSGREEDEEELKWAAIERLPTYDRV 73
RSMS R+ S +S S++ WASAS+ E + GDVF +S RE+DEEELKWAAIERLPT++R+
Sbjct: 12 RSMSSRRKSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFERL 70
Query: 74 RKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGI 133
RK MLK VL++G++ +EEVD + LGMQ++K+L+ESILKVVEEDNEKFLLRLRERTDRVG+
Sbjct: 71 RKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGV 130
Query: 134 EIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVS 193
EIPKIEVRFE+LS+EGDAYVGTRALPTLLN+++N IEG+LG +RL SKKR ++IL DVS
Sbjct: 131 EIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDVS 190
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
GIVKPSRMTLLLGPP SGKTTLLQAL+GK DK LR+ G++TYCGHEL+EFVPQRTCAYIS
Sbjct: 191 GIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYIS 250
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
QHDLHHGEMTVRETLDFSGRCLGVGTR+ELLAELSRREK++ IKPDPEIDAFMKATAM+G
Sbjct: 251 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMAG 310
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
+TSL TDYVLK+LGLDICADI++G++MRRGISGG+KKRVTTGEMLVGPAKALFMDEIST
Sbjct: 311 QETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIST 370
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYV 433
GLDSSTTFQIV+FMRQMVHI +VTMIISLLQPAPETYDLFD IILL EG+IVYQGPRE +
Sbjct: 371 GLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPRENI 430
Query: 434 LDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQ 493
L+FFESVGF+CP+RKG ADFLQEVTSRK+Q+QYW + NEPY+Y+SVPEF +HF +FH+GQ
Sbjct: 431 LEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIGQ 490
Query: 494 KLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITI 553
KL+D+L +PY+KS+THPA LV ++YGISNWELFK CFAREWLLMKRNSF+Y+FKT QITI
Sbjct: 491 KLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITI 550
Query: 554 MSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDF 613
MS+IA TV+ RT+M +GQL DG KFYGALF+SL+NVMFNGMAELALT+ RLP F+KQRDF
Sbjct: 551 MSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRDF 610
Query: 614 LFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLS 673
LF+PAWAFALPIWVLRIPLSLMES IWI+LTYYTIGFAPSA+RFFRQLLAFF VHQM LS
Sbjct: 611 LFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMALS 670
Query: 674 LFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIV 733
LFRFIAA+ RTQ+VANTLGTFTLLLVFVLGGFIVAKDDI+PWMIWGYY SPM+YGQNA+V
Sbjct: 671 LFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNALV 730
Query: 734 LNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFI 793
+NEFLD+RWSAPN + + EPTVGKALLKARGM+ + + +WIC+ AL+GFSL FN+CFI
Sbjct: 731 INEFLDDRWSAPNIDQ-RIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 789
Query: 794 AALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQN-MRAADMSPPSTAPLFEGIDMAVM 852
ALTYLDP ++KSV+++ + KS+KQ + ++ ++ A+ +P
Sbjct: 790 VALTYLDPLGDSKSVIIDEENEEKSEKQKTRESTKSVVKDANHTP--------------- 834
Query: 853 NTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGA 912
T++GMVLPFQPLSLAF+HVNY+VDMPA MKSQGIE +RLQLL+D SGA
Sbjct: 835 ------------TKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGA 882
Query: 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQND 972
FRPG+ ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK Q TFARISGYCEQND
Sbjct: 883 FRPGIQIALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQND 942
Query: 973 IHSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025
IHSPNVT+YESL+YSAWLRL D +FVEEVMELVE+ LR++LVGLPG+ GLST
Sbjct: 943 IHSPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLST 1002
Query: 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1085
EQRKRLT+AVELVANPSI+FMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSID
Sbjct: 1003 EQRKRLTVAVELVANPSILFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSID 1062
Query: 1086 IFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNA 1145
IFEAFDEL LMKRGG +IYAG LGR SHKLVEYFEAVPGVPK+RDG NPATW+LE+SS A
Sbjct: 1063 IFEAFDELLLMKRGGQIIYAGALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAA 1122
Query: 1146 VETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQ 1205
VE QL VDFA IYA S+LY+RNQ+LIKELS+P+PGSKDLYF TKYSQ FI+QCK CFWKQ
Sbjct: 1123 VEAQLGVDFAEIYAKSELYQRNQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQ 1182
Query: 1206 HWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASN 1265
HWSYWRNP YNAIRFFLT +IG LFG+IFW+KGEKT KEQDLINLLGAM+SAV FLGA+N
Sbjct: 1183 HWSYWRNPPYNAIRFFLTIIIGVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATN 1242
Query: 1266 ASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHW 1325
SSV VVAIERTVFYRERAAGMYS+L YAFAQV+IEAIYV+IQT+VYSLLLYSM+GF+W
Sbjct: 1243 TSSVQPVVAIERTVFYRERAAGMYSALPYAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYW 1302
Query: 1326 EVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQI 1385
V KFLWFY+++LMCF+YFTLYGMM+VALTPN QIA I+MSFFLSFWNLF+GF++PR QI
Sbjct: 1303 RVDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAIVMSFFLSFWNLFAGFLIPRMQI 1362
Query: 1386 PIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAV 1445
PIWWRWYYWASPV+WTIYGLVTSQ+GDK V+V G +VK YL + G++YDFLGAV
Sbjct: 1363 PIWWRWYYWASPVSWTIYGLVTSQVGDKEDPVQVPGAGVKSVKLYLKEALGFEYDFLGAV 1422
Query: 1446 AAAHIGFVVLFFFVFVYGIKFLNFQRR 1472
A AHIG+V+LF FVF YGIKFLNFQRR
Sbjct: 1423 ALAHIGWVLLFLFVFAYGIKFLNFQRR 1449
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486905|ref|XP_003633486.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2384 bits (6179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1127/1466 (76%), Positives = 1295/1466 (88%), Gaps = 43/1466 (2%)
Query: 15 RSMS-RKGSFSSASKKGWASASLREAWNNPGDVFAKSGREEDEEELKWAAIERLPTYDRV 73
RSMS R+ S +S S++ WASAS+ E + GDVF +S RE+DEEELKWAAIERLPT++R+
Sbjct: 12 RSMSSRRKSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFERL 70
Query: 74 RKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGI 133
RK MLK VL++G++ +EEVD + LGMQ++K+L+ESILKVVEEDNEKFLLRLRERTDRVG+
Sbjct: 71 RKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGV 130
Query: 134 EIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVS 193
EIPKIEVRFE+LS+EGDAYVGTRALPTLLN+++N IEG+LG +RL SKKR ++IL DVS
Sbjct: 131 EIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDVS 190
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
GIVKPSRMTLLLGPP SGKTTLLQAL+GK DK LR+ G++TYCGHEL+EFVPQRTCAYIS
Sbjct: 191 GIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYIS 250
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
QHDLHHGEMTVRETLDFSGRCLGVGTR+ELLAELSRREK++ IKPDPEIDAFMKATAM+G
Sbjct: 251 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMAG 310
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
+TSL TDYVLK+LGLDICADI++G++MRRGISGG+KKRVTTGEMLVGPAKALFMDEIST
Sbjct: 311 QETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIST 370
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYV 433
GLDSSTTFQIV+FMRQMVHI +VTMIISLLQPAPETYDLFD IILL EG+IVYQGPRE +
Sbjct: 371 GLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPRENI 430
Query: 434 LDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQ 493
L+FFESVGF+CP+RKG ADFLQEVTSRK+Q+QYW + NEPY+Y+SVPEF +HF +FH+GQ
Sbjct: 431 LEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIGQ 490
Query: 494 KLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITI 553
KL+D+L +PY+KS+THPA LV ++YGISNWELFK CFAREWLLMKRNSF+Y+FKT QITI
Sbjct: 491 KLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITI 550
Query: 554 MSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDF 613
MS+IA TV+ RT+M +GQL DG KFYGALF+SL+NVMFNGMAELALT+ RLP F+KQRDF
Sbjct: 551 MSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRDF 610
Query: 614 LFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLS 673
LF+PAWAFALPIWVLRIPLSLMES IWI+LTYYTIGFAPSA+RFFRQLLAFF VHQM LS
Sbjct: 611 LFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMALS 670
Query: 674 LFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIV 733
LFRFIAA+ RTQ+VANTLGTFTLLLVFVLGGFIVAKDDI+PWMIWGYY SPM+YGQNA+V
Sbjct: 671 LFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNALV 730
Query: 734 LNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFI 793
+NEFLD+RWSA + EPTVGKALLKARGM+ + + +WIC+ AL+GFSL FN+CFI
Sbjct: 731 INEFLDDRWSAVR-----IPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 785
Query: 794 AALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMN 853
ALTYLDP ++KSV+++ + KS+KQ ++ + ++ A+ +P
Sbjct: 786 VALTYLDPLGDSKSVIIDEENEEKSEKQEST--KSVVKDANHTP---------------- 827
Query: 854 TPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAF 913
T++GMVLPFQPLSLAF+HVNY+VDMPA MKSQGIE +RLQLL+D SGAF
Sbjct: 828 -----------TKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAF 876
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI 973
RPG+ ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK Q TFARISGYCEQNDI
Sbjct: 877 RPGIQIALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDI 936
Query: 974 HSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026
HSPNVT+YESL+YSAWLRL D +FVEEVMELVE+ LR++LVGLPG+ GLSTE
Sbjct: 937 HSPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTE 996
Query: 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1086
QRKRLT+AVELVANPSI+FMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDI
Sbjct: 997 QRKRLTVAVELVANPSILFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDI 1056
Query: 1087 FEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAV 1146
FEAFDEL LMKRGG +IYAG LGR SHKLVEYFEAVPGVPK+RDG NPATW+LE+SS AV
Sbjct: 1057 FEAFDELLLMKRGGQIIYAGALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAV 1116
Query: 1147 ETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQH 1206
E QL VDFA IYA S+LY+RNQ+LIKELS+P+PGSKDLYF TKYSQ FI+QCK CFWKQH
Sbjct: 1117 EAQLGVDFAEIYAKSELYQRNQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQH 1176
Query: 1207 WSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNA 1266
WSYWRNP YNAIRFFLT +IG LFG+IFW+KGEKT KEQDLINLLGAM+SAV FLGA+N
Sbjct: 1177 WSYWRNPPYNAIRFFLTIIIGVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATNT 1236
Query: 1267 SSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWE 1326
SSV VVAIERTVFYRERAAGMYS+L YAFAQV+IEAIYV+IQT+VYSLLLYSM+GF+W
Sbjct: 1237 SSVQPVVAIERTVFYRERAAGMYSALPYAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWR 1296
Query: 1327 VTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIP 1386
V KFLWFY+++LMCF+YFTLYGMM+VALTPN QIA I+MSFFLSFWNLF+GF++PR QIP
Sbjct: 1297 VDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAIVMSFFLSFWNLFAGFLIPRMQIP 1356
Query: 1387 IWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVA 1446
IWWRWYYWASPV+WTIYGLVTSQ+GDK V+V G +VK YL + G++YDFLGAVA
Sbjct: 1357 IWWRWYYWASPVSWTIYGLVTSQVGDKEDPVQVPGAGVKSVKLYLKEALGFEYDFLGAVA 1416
Query: 1447 AAHIGFVVLFFFVFVYGIKFLNFQRR 1472
AHIG+V+LF FVF YGIKFLNFQRR
Sbjct: 1417 LAHIGWVLLFLFVFAYGIKFLNFQRR 1442
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486909|ref|XP_003633487.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2380 bits (6169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1127/1466 (76%), Positives = 1289/1466 (87%), Gaps = 48/1466 (3%)
Query: 15 RSMS-RKGSFSSASKKGWASASLREAWNNPGDVFAKSGREEDEEELKWAAIERLPTYDRV 73
RSMS R+ S +S S++ WASAS+ E + GDVF +S RE+DEEELKWAAIERLPT++R+
Sbjct: 12 RSMSSRRKSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFERL 70
Query: 74 RKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGI 133
RK MLK VL++G++ +EEVD + LGMQ++K+L+ESILKVVEEDNEKFLLRLRERTDRVG+
Sbjct: 71 RKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGV 130
Query: 134 EIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVS 193
EIPKIEVRFE+LS+EGDAYVGTRALPTLLN+++N IEG+LG +RL SKKR ++IL DVS
Sbjct: 131 EIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDVS 190
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
GIVKPSRMTLLLGPP SGKTTLLQAL+GK DK LR+ G++TYCGHEL+EFVPQRTCAYIS
Sbjct: 191 GIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYIS 250
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
QHDLHHGEMTVRETLDFSGRCLGVGTR+ELLAELSRREK++ IKPDPEIDAFMKATAM+G
Sbjct: 251 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMAG 310
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
+TSL TDYVLK+LGLDICADI++G++MRRGISGG+KKRVTTGEMLVGPAKALFMDEIST
Sbjct: 311 QETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIST 370
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYV 433
GLDSSTTFQIV+FMRQMVHI +VTMIISLLQPAPETYDLFD IILL EG+IVYQGPRE +
Sbjct: 371 GLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPRENI 430
Query: 434 LDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQ 493
L+FFESVGF+CP+RKG ADFLQEVTSRK+Q+QYW + NEPY+Y+SVPEF +HF +FH+GQ
Sbjct: 431 LEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIGQ 490
Query: 494 KLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITI 553
KL+D+L +PY+KS+THPA LV ++YGISNWELFK CFAREWLLMKRNSF+Y+FKT QITI
Sbjct: 491 KLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITI 550
Query: 554 MSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDF 613
MS+IA TV+ RT+M +GQL DG KFYGALF+SL+NVMFNGMAELALT+ RLP F+KQRDF
Sbjct: 551 MSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRDF 610
Query: 614 LFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLS 673
LF+PAWAFALPIWVLRIPLSLMES IWI+LTYYTIGFAPSA+RFFRQLLAFF VHQM LS
Sbjct: 611 LFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMALS 670
Query: 674 LFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIV 733
LFRFIAA+ RTQ+VANTLGTFTLLLVFVLGGFIVAKDDI+PWMIWGYY SPM+YGQNA+V
Sbjct: 671 LFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNALV 730
Query: 734 LNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFI 793
+NEFLD+RWSAPN + + EPTVGKALLKARGM+ + + +WIC+ AL+GFSL FN+CFI
Sbjct: 731 INEFLDDRWSAPNIDQ-RIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 789
Query: 794 AALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMN 853
ALTYLDP ++KSV+++ + K K +N
Sbjct: 790 VALTYLDPLGDSKSVIIDEENEEKIVKDANH----------------------------- 820
Query: 854 TPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAF 913
T T++GMVLPFQPLSLAF+HVNY+VDMPA MKSQGIE +RLQLL+D SGAF
Sbjct: 821 ---------TPTKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAF 871
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI 973
RPG+ ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK Q TFARISGYCEQNDI
Sbjct: 872 RPGIQIALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDI 931
Query: 974 HSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026
HSPNVT+YESL+YSAWLRL D +FVEEVMELVE+ LR++LVGLPG+ GLSTE
Sbjct: 932 HSPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTE 991
Query: 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1086
QRKRLT+AVELVANPSI+FMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDI
Sbjct: 992 QRKRLTVAVELVANPSILFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDI 1051
Query: 1087 FEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAV 1146
FEAFDEL LMKRGG +IYAG LGR SHKLVEYFEAVPGVPK+RDG NPATW+LE+SS AV
Sbjct: 1052 FEAFDELLLMKRGGQIIYAGALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAV 1111
Query: 1147 ETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQH 1206
E QL VDFA IYA S+LY+RNQ+LIKELS+P+PGSKDLYF TKYSQ FI+QCK CFWKQH
Sbjct: 1112 EAQLGVDFAEIYAKSELYQRNQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQH 1171
Query: 1207 WSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNA 1266
WSYWRNP YNAIRFFLT +IG LFG+IFW+KGEKT KEQDLINLLGAM+SAV FLGA+N
Sbjct: 1172 WSYWRNPPYNAIRFFLTIIIGVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATNT 1231
Query: 1267 SSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWE 1326
SSV VVAIERTVFYRERAAGMYS+L YAFAQV+IEAIYV+IQT+VYSLLLYSM+GF+W
Sbjct: 1232 SSVQPVVAIERTVFYRERAAGMYSALPYAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWR 1291
Query: 1327 VTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIP 1386
V KFLWFY+++LMCF+YFTLYGMM+VALTPN QIA I+MSFFLSFWNLF+GF++PR QIP
Sbjct: 1292 VDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAIVMSFFLSFWNLFAGFLIPRMQIP 1351
Query: 1387 IWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVA 1446
IWWRWYYWASPV+WTIYGLVTSQ+GDK V+V G +VK YL + G++YDFLGAVA
Sbjct: 1352 IWWRWYYWASPVSWTIYGLVTSQVGDKEDPVQVPGAGVKSVKLYLKEALGFEYDFLGAVA 1411
Query: 1447 AAHIGFVVLFFFVFVYGIKFLNFQRR 1472
AHIG+V+LF FVF YGIKFLNFQRR
Sbjct: 1412 LAHIGWVLLFLFVFAYGIKFLNFQRR 1437
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486942|ref|XP_002265628.2| PREDICTED: pleiotropic drug resistance protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2376 bits (6157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1126/1467 (76%), Positives = 1287/1467 (87%), Gaps = 47/1467 (3%)
Query: 18 SRKGSFSSASKKGWASASLREAWNNPGDVFAKSGREEDEEELKWAAIERLPTYDRVRKTM 77
SR S S S++ WASAS+RE + GDVF +S RE+DEEELKWAAIERLPT++R+RK M
Sbjct: 16 SRSKSLGSGSRRSWASASIREVVSAQGDVF-QSRREDDEEELKWAAIERLPTFERLRKGM 74
Query: 78 LKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPK 137
LK VL++G++ +EEVD + LGMQ++K+L+ESILKVVEEDNEKFLLRLRERTDRVG+EIPK
Sbjct: 75 LKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGVEIPK 134
Query: 138 IEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVK 197
IEV FE+LSIEGDAYVGTRALPTLLN ++N IEG+LG +RL PSKKR ++IL DVSGIVK
Sbjct: 135 IEVWFEHLSIEGDAYVGTRALPTLLNFTMNFIEGILGLIRLSPSKKRVVKILKDVSGIVK 194
Query: 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDL 257
PSRMTLLLGPP SGKTTLLQAL+GK DK LR+ G++TYCGHEL+EFVPQRTCAYISQHDL
Sbjct: 195 PSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYISQHDL 254
Query: 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTS 317
HHGEMTVRETLDFSGRCLGVGTR+ELLAELSRREK+AGIKPDPEIDAFMKATAM+G +TS
Sbjct: 255 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMAGQETS 314
Query: 318 LGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDS 377
L TDYVLKILGLDICADI+VG++MRRGISGG+KKRVT GEMLVGPAKALFMDEISTGLDS
Sbjct: 315 LVTDYVLKILGLDICADIVVGDDMRRGISGGEKKRVTIGEMLVGPAKALFMDEISTGLDS 374
Query: 378 STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFF 437
STTFQ+V+FMRQMVHI +VTMIISLLQPAPETYDLFD IILL EG+IVYQGPRE +L+FF
Sbjct: 375 STTFQVVKFMRQMVHIMEVTMIISLLQPAPETYDLFDGIILLCEGQIVYQGPRENILEFF 434
Query: 438 ESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTD 497
ES+GF+CPERKG ADFLQEVTSRKDQ+QYW +KNEPYRY+SVPEFV+HF +FH+GQKL+D
Sbjct: 435 ESIGFKCPERKGVADFLQEVTSRKDQEQYWFRKNEPYRYISVPEFVQHFNSFHIGQKLSD 494
Query: 498 ELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSII 557
+ +PYD+S+THPA LV ++YGISNWELFK CFAREWLLMKRNSF+Y+FKT QITIMS+I
Sbjct: 495 DFGIPYDRSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITIMSVI 554
Query: 558 AFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFP 617
A TV+ RT+M +GQL DG KFYGALF+SL+NVMFNG+AELALTI RLP F+KQRDFLF+P
Sbjct: 555 AMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGLAELALTIFRLPVFFKQRDFLFYP 614
Query: 618 AWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRF 677
AWAFALPIWVLRIPLSLMES IWI+LTYYTIG+AP+A+RFFRQLLAFF VHQM LSLFRF
Sbjct: 615 AWAFALPIWVLRIPLSLMESGIWIILTYYTIGYAPAASRFFRQLLAFFVVHQMALSLFRF 674
Query: 678 IAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEF 737
IAA+ RT +VANTL TFTLLLV VLGGF+V+KDDIKPWMIWGYY SPM YGQNA+V+NEF
Sbjct: 675 IAALGRTLIVANTLATFTLLLVSVLGGFVVSKDDIKPWMIWGYYASPMMYGQNALVINEF 734
Query: 738 LDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALT 797
LD+RWS PN + EPTVGKALLKARGM+ + + +WI + ALLGFSL FN+CFIAALT
Sbjct: 735 LDDRWSTPN-IYTRIPEPTVGKALLKARGMFVDGYWYWISVGALLGFSLLFNICFIAALT 793
Query: 798 YLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDN 857
YLDP ++KSV+++ EGIDM V NT +N
Sbjct: 794 YLDPLGDSKSVIID---------------------------------EGIDMEVRNTREN 820
Query: 858 S--IIGATS---TRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGA 912
+ ++ + T++GMVLPFQPLSLAF+HVNY+VDMPA MKSQG E + LQLL+D SGA
Sbjct: 821 TKAVVKDANHALTKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGNEADHLQLLRDASGA 880
Query: 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQND 972
FRPG+L ALVGVSGAGKTTLMDVLAGRKT GYIEGSISISGYPK Q TFARISGYCEQ D
Sbjct: 881 FRPGILMALVGVSGAGKTTLMDVLAGRKTSGYIEGSISISGYPKNQATFARISGYCEQTD 940
Query: 973 IHSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025
IHSPNVT+YESL+YSAWLRL D +FVEEVM+LVE+ LRN+LVGLPG+DGLST
Sbjct: 941 IHSPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMDLVELHPLRNALVGLPGIDGLST 1000
Query: 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1085
EQRKRLT+AVELVANPSIIFMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSID
Sbjct: 1001 EQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSID 1060
Query: 1086 IFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNA 1145
IFEAFDEL LMKRGG +IYAGPLGR SHKLVEYFEAVPGVPK+RDG NPATW+LE+SS A
Sbjct: 1061 IFEAFDELLLMKRGGQIIYAGPLGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAA 1120
Query: 1146 VETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQ 1205
VE QL VDFA IYA S+LY+RNQ+ IKELS+P+PGSKDLYF TKYSQ FITQCK CFWKQ
Sbjct: 1121 VEAQLGVDFAEIYAKSELYQRNQEFIKELSTPSPGSKDLYFPTKYSQSFITQCKACFWKQ 1180
Query: 1206 HWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASN 1265
HWSYWRNP YNA+RFFLT +IG LFG+IFW++GE+T KEQDLINLLGAM++AV FLGA+N
Sbjct: 1181 HWSYWRNPPYNALRFFLTIIIGVLFGLIFWNEGEQTDKEQDLINLLGAMFAAVFFLGATN 1240
Query: 1266 ASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHW 1325
A+SV +VAIERTVFYRERAAGMYS+L YAFAQV+IEAIY++IQT VY+LLLYSMIGF+W
Sbjct: 1241 AASVQPIVAIERTVFYRERAAGMYSALPYAFAQVAIEAIYITIQTFVYTLLLYSMIGFYW 1300
Query: 1326 EVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQI 1385
V KFLWFY+++LMCF+YFTLYGMM+VALTPN QIA ILMSFFLSFWNLFSGF++PRTQI
Sbjct: 1301 RVDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAILMSFFLSFWNLFSGFLIPRTQI 1360
Query: 1386 PIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAV 1445
PIWWRWYYWASPVAWTIYGLVTSQ+GDK V+V G ++VK+YL + G++YDFL AV
Sbjct: 1361 PIWWRWYYWASPVAWTIYGLVTSQVGDKEDPVQVPGADDMSVKQYLKEALGFEYDFLRAV 1420
Query: 1446 AAAHIGFVVLFFFVFVYGIKFLNFQRR 1472
A AHIG+V+LF FVF YGIKF+NFQRR
Sbjct: 1421 ALAHIGWVLLFLFVFAYGIKFINFQRR 1447
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486911|ref|XP_003633488.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2362 bits (6120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1120/1466 (76%), Positives = 1289/1466 (87%), Gaps = 47/1466 (3%)
Query: 15 RSMS-RKGSFSSASKKGWASASLREAWNNPGDVFAKSGREEDEEELKWAAIERLPTYDRV 73
RSMS R+ S +S S++ WASAS+ E + GDVF +S RE+DEEELKWAAIERLPT++R+
Sbjct: 12 RSMSSRRKSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFERL 70
Query: 74 RKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGI 133
RK MLK VL++G++ +EEVD + LGMQ++K+L+ESILKVVEEDNEKFLLRLRERTDRVG+
Sbjct: 71 RKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGV 130
Query: 134 EIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVS 193
EIPKIEVRFE+LS+EGDAYVGTRALPTLLN+++N IEG+LG +RL SKKR ++IL DVS
Sbjct: 131 EIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDVS 190
Query: 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
GIVKPSRMTLLLGPP SGKTTLLQAL+GK DK LR+ G++TYCGHEL+EFVPQRTCAYIS
Sbjct: 191 GIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYIS 250
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
QHDLHHGEMTVRETLDFSGRCLGVGTR+ELLAELSRREK++ IKPDPEIDAFMKATAM+G
Sbjct: 251 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMAG 310
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
+TSL TDYVLK+LGLDICADI++G++MRRGISGG+KKRVTTG +KALFMDEIST
Sbjct: 311 QETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGM-----SKALFMDEIST 365
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYV 433
GLDSSTTFQIV+FMRQMVHI +VTMIISLLQPAPETYDLFD IILL EG+IVYQGPRE +
Sbjct: 366 GLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPRENI 425
Query: 434 LDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQ 493
L+FFESVGF+CP+RKG ADFLQEVTSRK+Q+QYW + NEPY+Y+SVPEF +HF +FH+GQ
Sbjct: 426 LEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIGQ 485
Query: 494 KLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITI 553
KL+D+L +PY+KS+THPA LV ++YGISNWELFK CFAREWLLMKRNSF+Y+FKT QITI
Sbjct: 486 KLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITI 545
Query: 554 MSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDF 613
MS+IA TV+ RT+M +GQL DG KFYGALF+SL+NVMFNGMAELALT+ RLP F+KQRDF
Sbjct: 546 MSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRDF 605
Query: 614 LFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLS 673
LF+PAWAFALPIWVLRIPLSLMES IWI+LTYYTIGFAPSA+RFFRQLLAFF VHQM LS
Sbjct: 606 LFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMALS 665
Query: 674 LFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIV 733
LFRFIAA+ RTQ+VANTLGTFTLLLVFVLGGFIVAKDDI+PWMIWGYY SPM+YGQNA+V
Sbjct: 666 LFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNALV 725
Query: 734 LNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFI 793
+NEFLD+RWSAPN + + EPTVGKALLKARGM+ + + +WIC+ AL+GFSL FN+CFI
Sbjct: 726 INEFLDDRWSAPNIDQ-RIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 784
Query: 794 AALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMN 853
ALTYLDP ++KSV+++ + KS+ + + ++ A+ +P
Sbjct: 785 VALTYLDPLGDSKSVIIDEENEEKSE-----NTKSVVKDANHTP---------------- 823
Query: 854 TPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAF 913
T++GMVLPFQPLSLAF+HVNY+VDMPA MKSQGIE +RLQLL+D SGAF
Sbjct: 824 -----------TKRGMVLPFQPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAF 872
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI 973
RPG+ ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK Q TFARISGYCEQNDI
Sbjct: 873 RPGIQIALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDI 932
Query: 974 HSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026
HSPNVT+YESL+YSAWLRL D +FVEEVMELVE+ LR++LVGLPG+ GLSTE
Sbjct: 933 HSPNVTVYESLVYSAWLRLAPDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTE 992
Query: 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1086
QRKRLT+AVELVANPSI+FMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDI
Sbjct: 993 QRKRLTVAVELVANPSILFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDI 1052
Query: 1087 FEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAV 1146
FEAFDEL LMKRGG +IYAG LGR SHKLVEYFEAVPGVPK+RDG NPATW+LE+SS AV
Sbjct: 1053 FEAFDELLLMKRGGQIIYAGALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAV 1112
Query: 1147 ETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQH 1206
E QL VDFA IYA S+LY+RNQ+LIKELS+P+PGSKDLYF TKYSQ FI+QCK CFWKQH
Sbjct: 1113 EAQLGVDFAEIYAKSELYQRNQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQH 1172
Query: 1207 WSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNA 1266
WSYWRNP YNAIRFFLT +IG LFG+IFW+KGEKT KEQDLINLLGAM+SAV FLGA+N
Sbjct: 1173 WSYWRNPPYNAIRFFLTIIIGVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATNT 1232
Query: 1267 SSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWE 1326
SSV VVAIERTVFYRERAAGMYS+L YAFAQV+IEAIYV+IQT+VYSLLLYSM+GF+W
Sbjct: 1233 SSVQPVVAIERTVFYRERAAGMYSALPYAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWR 1292
Query: 1327 VTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIP 1386
V KFLWFY+++LMCF+YFTLYGMM+VALTPN QIA I+MSFFLSFWNLF+GF++PR QIP
Sbjct: 1293 VDKFLWFYYYLLMCFIYFTLYGMMIVALTPNHQIAAIVMSFFLSFWNLFAGFLIPRMQIP 1352
Query: 1387 IWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVA 1446
IWWRWYYWASPV+WTIYGLVTSQ+GDK V+V G +VK YL + G++YDFLGAVA
Sbjct: 1353 IWWRWYYWASPVSWTIYGLVTSQVGDKEDPVQVPGAGVKSVKLYLKEALGFEYDFLGAVA 1412
Query: 1447 AAHIGFVVLFFFVFVYGIKFLNFQRR 1472
AHIG+V+LF FVF YGIKFLNFQRR
Sbjct: 1413 LAHIGWVLLFLFVFAYGIKFLNFQRR 1438
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481989|ref|XP_002277172.2| PREDICTED: pleiotropic drug resistance protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2343 bits (6071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1113/1445 (77%), Positives = 1278/1445 (88%), Gaps = 47/1445 (3%)
Query: 38 EAWNNPGDVFAKSGREEDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSEL 97
E W P DVF +SGR++DEEEL+WAAIERLPTYDR+R+ ML+ VL+NGR+ ++VDV++L
Sbjct: 27 EVWTAPPDVFNRSGRQDDEEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTKL 86
Query: 98 GMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRA 157
G+QDKK L+ESILKVVE+DNEKFL RLR+RTDRVGIE PKIEVR++NLSIEGD YVG+RA
Sbjct: 87 GVQDKKQLMESILKVVEDDNEKFLHRLRDRTDRVGIETPKIEVRYQNLSIEGDVYVGSRA 146
Query: 158 LPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQ 217
LPTLLN +LN IE VLG + L PSKKRK++IL DVSGIVKPSRMTLLLGPP SGKTTLL
Sbjct: 147 LPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLL 206
Query: 218 ALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 277
AL+GK D L+VSG+VTYCGHEL EF+PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV
Sbjct: 207 ALAGKLDHDLKVSGKVTYCGHELDEFIPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 266
Query: 278 GTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337
GTR+E+LAELSRRE++AGIKPDPEIDAFMKATAMSG +TSL TDYVLKILGLDICADIMV
Sbjct: 267 GTRYEMLAELSRREREAGIKPDPEIDAFMKATAMSGQETSLVTDYVLKILGLDICADIMV 326
Query: 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT 397
G++MRRGISGGQKKRVTTGEMLVGPAK L MDEISTGLDSSTTFQIV+FMRQMVHI DVT
Sbjct: 327 GDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQIVKFMRQMVHIMDVT 386
Query: 398 MIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEV 457
MIISLLQPAPETYDLFDDIILLS+G+IVYQGPRE VL+FFE +GFRCPERKG ADFLQEV
Sbjct: 387 MIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEYMGFRCPERKGVADFLQEV 446
Query: 458 TSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKR 517
TS+KDQ+QYW K+N+PY + SVP+FVE F +FHVGQ+L+ EL VPYDK++THPA LV ++
Sbjct: 447 TSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVGQQLSAELSVPYDKTRTHPAALVTEK 506
Query: 518 YGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGK 577
YGISN+ELFK CFAREWLLMKRNSFVY+FKT QITIMS+IA TV+LRTQM +G L DGGK
Sbjct: 507 YGISNYELFKACFAREWLLMKRNSFVYIFKTTQITIMSLIALTVFLRTQMPHGTLADGGK 566
Query: 578 FYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMES 637
F+GALFFSL+NVMFNGMAELA+T+ RLP F+KQRDFLF+PAWAFALPIWVLRIPLS MES
Sbjct: 567 FFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSFMES 626
Query: 638 SIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLL 697
IWI+LTYYTIGFAP+A+RFFRQ LAFF +HQM LSLFRFIAAV RTQVVANTLGTFTLL
Sbjct: 627 GIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRTQVVANTLGTFTLL 686
Query: 698 LVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNP-ARFLVDEPT 756
+VFVLGGFI++K+DI+P+MIWGYY+SPM YGQNAIV+NEFLD+RW+APN +RF +EPT
Sbjct: 687 MVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAIVMNEFLDKRWAAPNTDSRF--NEPT 744
Query: 757 VGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGG 816
VGK LLK+RG + +++ FWIC+VALL FSL FN+ F+AALT+L+P +TK+ ++
Sbjct: 745 VGKVLLKSRGFFVDEYWFWICVVALLAFSLLFNVLFVAALTFLNPLGDTKNAILN----- 799
Query: 817 KSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGA--TSTRKGMVLPFQ 874
EG DMAV+N+ + I+G+ + ++GMVLPFQ
Sbjct: 800 ----------------------------EGTDMAVINS--SEIVGSAENAPKRGMVLPFQ 829
Query: 875 PLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMD 934
PLSLAF+HVNYFVDMPAEMKSQG+EE+RLQLL+DVSGAFRPG+LTALVGVSGAGKTTLMD
Sbjct: 830 PLSLAFEHVNYFVDMPAEMKSQGVEEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLMD 889
Query: 935 VLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994
VLAGRKTGGYIEGSISISGYPK Q+TFAR+SGYCEQNDIHSP VT++ESLLYSAWLRL
Sbjct: 890 VLAGRKTGGYIEGSISISGYPKNQKTFARVSGYCEQNDIHSPYVTVHESLLYSAWLRLSS 949
Query: 995 D-------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1047
D MFVEEVMELVE+K LR+SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 950 DVDTQTRKMFVEEVMELVELKPLRDSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1009
Query: 1048 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG VIYAGP
Sbjct: 1010 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1069
Query: 1108 LGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRN 1167
LGR SHKLVEYFEA+PGVPKI++G NPATW+L VS+++VE Q+ VDFA IYA+S LY+RN
Sbjct: 1070 LGRHSHKLVEYFEAIPGVPKIKEGSNPATWMLVVSASSVEAQMEVDFAEIYANSSLYQRN 1129
Query: 1168 QQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIG 1227
Q+LIKELS+P P SKDLYF T++SQ F TQCK CFWKQHWSYWRNP+YNAIRFF+T VIG
Sbjct: 1130 QELIKELSTPPPASKDLYFPTEFSQPFSTQCKACFWKQHWSYWRNPQYNAIRFFMTIVIG 1189
Query: 1228 ALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAG 1287
ALFG+IFW+KGE+T+K+QDL+NLLGAMY+AVLFLGA+NAS+V S+VAIERTVFYRERAAG
Sbjct: 1190 ALFGVIFWNKGEQTTKQQDLMNLLGAMYAAVLFLGATNASAVQSIVAIERTVFYRERAAG 1249
Query: 1288 MYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLY 1347
MYS L YAFAQVSIEAIYV+IQTIVY+LLLYSMIGF W+V KFLWFY+++LMCF+YFT+Y
Sbjct: 1250 MYSPLPYAFAQVSIEAIYVAIQTIVYTLLLYSMIGFDWKVGKFLWFYYYILMCFIYFTMY 1309
Query: 1348 GMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVT 1407
GMM+VALTP QIA I+MSFFLSFWNLFSGF++PR QIP+WWRWYYWASPVAWT+YGLVT
Sbjct: 1310 GMMVVALTPGHQIAAIVMSFFLSFWNLFSGFLIPRPQIPVWWRWYYWASPVAWTLYGLVT 1369
Query: 1408 SQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFL 1467
SQ+GDK + +EV G + +K +L + G++YDFL AVA AH+ +V LFFFVF YGI+FL
Sbjct: 1370 SQVGDKNALLEVPGSGNVPLKLFLKESLGFEYDFLPAVAVAHVVWVALFFFVFAYGIRFL 1429
Query: 1468 NFQRR 1472
NFQRR
Sbjct: 1430 NFQRR 1434
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486940|ref|XP_003633494.1| PREDICTED: pleiotropic drug resistance protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2331 bits (6040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1109/1441 (76%), Positives = 1266/1441 (87%), Gaps = 47/1441 (3%)
Query: 44 GDVFAKSGREEDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKK 103
GD F +S +E+DEEELKWAAIERLPT++R+RK MLK VL++G++ +EEVD + LGMQ++K
Sbjct: 20 GDAF-QSRKEDDEEELKWAAIERLPTFERLRKGMLKQVLDDGKVVHEEVDFTNLGMQERK 78
Query: 104 NLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLN 163
+ +ESILKVVEEDNEKFLLRLRERTDRVG+EIPKIEVRFE+LSIEGDAYVGTRALPTLLN
Sbjct: 79 HHIESILKVVEEDNEKFLLRLRERTDRVGVEIPKIEVRFEHLSIEGDAYVGTRALPTLLN 138
Query: 164 TSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223
++N IEG+LG +RL PSKKR ++IL DVSGIVKPSRMTLLLGPP SGKTTLLQAL+GK
Sbjct: 139 FTMNFIEGILGLIRLSPSKKRVVKILKDVSGIVKPSRMTLLLGPPASGKTTLLQALAGKM 198
Query: 224 DKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFEL 283
DK LR+ G++TYCGHEL+EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR+EL
Sbjct: 199 DKDLRMEGKITYCGHELSEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 258
Query: 284 LAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343
LAELSRREK+AGIKPDPEIDAFMKATAM+G +TSL TDYVLK+LGLDICADI++G++MRR
Sbjct: 259 LAELSRREKEAGIKPDPEIDAFMKATAMAGQETSLVTDYVLKMLGLDICADIVLGDDMRR 318
Query: 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL 403
GISGG+KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIV+FMRQMVHI +VTMIISLL
Sbjct: 319 GISGGEKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVKFMRQMVHIMEVTMIISLL 378
Query: 404 QPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQ 463
QPAPETYDLFD IILL EG+IVYQGPRE +L FFESVGF+CP+RKG ADFLQEVTSRKDQ
Sbjct: 379 QPAPETYDLFDAIILLCEGQIVYQGPRENILGFFESVGFKCPKRKGVADFLQEVTSRKDQ 438
Query: 464 QQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNW 523
+QYW + N+PY+Y+SVPEFV+HF +FH+GQKL+D+L +PY+KS+THP LV ++YGISNW
Sbjct: 439 EQYWFRNNKPYKYISVPEFVQHFNSFHIGQKLSDDLGIPYNKSRTHPTALVTEKYGISNW 498
Query: 524 ELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALF 583
ELFK CFAREWLLMKRNSF+Y+FKT QITIMS+IA TV+ RT+M +GQL +G KFYGALF
Sbjct: 499 ELFKACFAREWLLMKRNSFIYIFKTTQITIMSVIAMTVFFRTEMKHGQLQNGVKFYGALF 558
Query: 584 FSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILL 643
+SL+NVMFNGMAELALT+ RLP F+KQRDFLF+PAWAFALPIWVLRIPLS ES IWI+L
Sbjct: 559 YSLINVMFNGMAELALTLFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSFTESGIWIIL 618
Query: 644 TYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLG 703
TYYTIGFAPSA+RFFRQLLAFF VHQM LSLFRFIAA+ RTQ+VANTLGTFTLLLVFVLG
Sbjct: 619 TYYTIGFAPSASRFFRQLLAFFGVHQMALSLFRFIAALGRTQIVANTLGTFTLLLVFVLG 678
Query: 704 GFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLK 763
GFIVAKDDI+PWMIWGYY SPM YGQNA+V+NEFLD+RWSAPN R + EPTVGKALLK
Sbjct: 679 GFIVAKDDIEPWMIWGYYASPMMYGQNALVINEFLDDRWSAPNIDR-RIPEPTVGKALLK 737
Query: 764 ARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQSN 823
ARGM+ + + +WICI AL GFSL FN+CFIAALTYL+P ++KSV+++
Sbjct: 738 ARGMFVDGYWYWICIGALTGFSLLFNICFIAALTYLNPPGDSKSVIID------------ 785
Query: 824 SHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDN--SII---GATSTRKGMVLPFQPLSL 878
EGIDM V NT +N S++ T++GMVLPFQPLSL
Sbjct: 786 ---------------------EGIDMEVRNTRENTKSVVKDANHAPTKRGMVLPFQPLSL 824
Query: 879 AFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938
AF+HVNY+VDMPA MKSQGIE +RLQLL+D SGAFRPG+L ALVGVSGAGKTTLMDVLAG
Sbjct: 825 AFEHVNYYVDMPAGMKSQGIEVDRLQLLRDASGAFRPGILMALVGVSGAGKTTLMDVLAG 884
Query: 939 RKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD--- 995
RKTGGYIEGSIS+SGYPK Q TF RISGYCEQNDIHSPNVT+YESL+YSAWLRL D
Sbjct: 885 RKTGGYIEGSISVSGYPKDQATFPRISGYCEQNDIHSPNVTVYESLVYSAWLRLAPDVKK 944
Query: 996 ----MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051
+FVEEVM+L+E+ LR++LVGLPG+ GLSTEQRKRLT+AVELVANPSI+FMDEPT+
Sbjct: 945 ETRQVFVEEVMDLIELHPLRDALVGLPGIHGLSTEQRKRLTVAVELVANPSILFMDEPTT 1004
Query: 1052 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQ 1111
GLDARAAA+VM TVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG VIYAGPLGR
Sbjct: 1005 GLDARAAAVVMCTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRN 1064
Query: 1112 SHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRNQQLI 1171
SHKLVEYFEAVPGVPK+RDG NPATW+LEV+S A E QL VDFA IYA S+LY+RNQ+LI
Sbjct: 1065 SHKLVEYFEAVPGVPKVRDGQNPATWMLEVTSAAYEAQLGVDFAEIYAKSELYQRNQELI 1124
Query: 1172 KELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFG 1231
KELS+P+PGSK+LYF TKYSQ F TQCK CFWKQHWSYWRNP YNAIRFFLT +IG LFG
Sbjct: 1125 KELSTPSPGSKNLYFPTKYSQSFFTQCKACFWKQHWSYWRNPPYNAIRFFLTIIIGVLFG 1184
Query: 1232 MIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSS 1291
+IFW+KGE+ KEQDL+NLLGAM+SAV FLGA+N ++V VVAIERTVFYRERAAGMYS+
Sbjct: 1185 VIFWNKGEQIDKEQDLLNLLGAMFSAVFFLGATNTAAVQPVVAIERTVFYRERAAGMYSA 1244
Query: 1292 LTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMML 1351
L YAFAQV IE IYV+IQT+VYSLLLYSM+GF+W V KFLWFY+++LMCF+YFTLYGMM+
Sbjct: 1245 LPYAFAQVVIETIYVAIQTLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTLYGMMI 1304
Query: 1352 VALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIG 1411
VALTP+ QIA I+MSFFLSFWNLFSGF++PR QIPIWWRWYYWASPVAWTIYGLVTSQ+G
Sbjct: 1305 VALTPSHQIAAIVMSFFLSFWNLFSGFLIPRMQIPIWWRWYYWASPVAWTIYGLVTSQVG 1364
Query: 1412 DKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLNFQR 1471
+K V+V G +VK YL + G++YDFLGAVA AHIG+V+LF FVF YGIKFLNFQR
Sbjct: 1365 NKEDPVQVPGAGVKSVKLYLKEASGFEYDFLGAVALAHIGWVLLFLFVFAYGIKFLNFQR 1424
Query: 1472 R 1472
R
Sbjct: 1425 R 1425
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449690|ref|XP_002265196.1| PREDICTED: pleiotropic drug resistance protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2299 bits (5958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/1447 (75%), Positives = 1255/1447 (86%), Gaps = 41/1447 (2%)
Query: 34 ASLREAWNNPGDVFAKSGREEDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVD 93
AS+ EA + GDVF +S RE+DEEELKWAAIERLPT++R+ K M K VL++G++ +EEVD
Sbjct: 32 ASICEALSAQGDVFQRSRREDDEEELKWAAIERLPTFERLSKEMPKQVLDDGKVVHEEVD 91
Query: 94 VSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYV 153
+ LGMQ++K+ +ESI KVVEEDNEKFLLRLRERTDRVG+EIPKIEVRFE+LSIEGDAYV
Sbjct: 92 FTNLGMQERKHHIESIPKVVEEDNEKFLLRLRERTDRVGVEIPKIEVRFEHLSIEGDAYV 151
Query: 154 GTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKT 213
GTRALPTL+N+++N IEG+LG +RL PSKKR ++IL DVSGIVKPSRMTLLLGPP SGKT
Sbjct: 152 GTRALPTLINSTMNFIEGILGLIRLSPSKKRVVKILKDVSGIVKPSRMTLLLGPPASGKT 211
Query: 214 TLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGR 273
TLLQAL+GK +K LR+ GR+TYCGHE +EFVPQRTCAYI QHDLHHGEMTVRETLDFSGR
Sbjct: 212 TLLQALAGKMNKDLRMEGRITYCGHESSEFVPQRTCAYIGQHDLHHGEMTVRETLDFSGR 271
Query: 274 CLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICA 333
CLGVGTR+ELLAELSRREK+AGIKPDPEIDAFM+AT +T+L TDYVLK+LGLDICA
Sbjct: 272 CLGVGTRYELLAELSRREKEAGIKPDPEIDAFMRAT-----ETNLVTDYVLKMLGLDICA 326
Query: 334 DIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHI 393
DIMVG++MRRGISGG+KKRVTTGEMLV PAKALFMDEISTGLDSSTTFQIV+FMRQMVHI
Sbjct: 327 DIMVGDDMRRGISGGEKKRVTTGEMLVRPAKALFMDEISTGLDSSTTFQIVKFMRQMVHI 386
Query: 394 TDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADF 453
+VTMIISLLQPAPETYDLFD IILL EG+IVYQGPRE +L+FFES+GF+CPERKG DF
Sbjct: 387 MEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPRENILEFFESMGFKCPERKGVVDF 446
Query: 454 LQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGL 513
L EVTSRKDQ+QYW +KNEPY+Y+SVPEFV+HF +FH+GQKL+D+L +PY+KS+T PA L
Sbjct: 447 LHEVTSRKDQEQYWFRKNEPYKYISVPEFVQHFNSFHIGQKLSDDLGIPYNKSRTQPAAL 506
Query: 514 VKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLI 573
V ++YGISNWELFK CF REWLLMKRNSF+Y+FKT QITIMS+IA TV+ RT+M +GQL
Sbjct: 507 VTEKYGISNWELFKACFVREWLLMKRNSFIYIFKTTQITIMSVIAMTVFFRTEMKHGQLQ 566
Query: 574 DGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLS 633
DG KF GALF+ L+NVM+NGMAELALTI RLP F+KQRD LF+PAWAFALPIWVLRIPLS
Sbjct: 567 DGVKFNGALFYGLINVMYNGMAELALTIFRLPVFFKQRDLLFYPAWAFALPIWVLRIPLS 626
Query: 634 LMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGT 693
LMES IWI+LTYYTIGFAPSA+RFFRQL+A F VHQM LSLFRFIAA+ RTQ+VANTL T
Sbjct: 627 LMESGIWIILTYYTIGFAPSASRFFRQLVALFLVHQMALSLFRFIAALGRTQIVANTLAT 686
Query: 694 FTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVD 753
FTLLLVFV GGFIV+KDDI+PWMIW YY SPM+YGQNA+V+NEFLD+RWSAPN R +
Sbjct: 687 FTLLLVFVRGGFIVSKDDIEPWMIWAYYASPMTYGQNALVINEFLDDRWSAPNINR-RIP 745
Query: 754 EPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHN 813
EPTVGKALLK RGM+ + + +WIC+ AL GFSL FN+CFIAALTYL+P + + SV+++ +
Sbjct: 746 EPTVGKALLKERGMFVDGYWYWICVGALTGFSLLFNICFIAALTYLNPLEGSNSVIIDED 805
Query: 814 DGGKSKKQSNSHAQQNM-RAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLP 872
D KS+KQ+ +++ + A+ P T++ MVLP
Sbjct: 806 DEKKSEKQNTGENTKSVVKDANHEP---------------------------TKREMVLP 838
Query: 873 FQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTL 932
FQPLSLAF+HVNY+VDMPAEMKSQGIE +RLQLL D SGAFRPG+LTALVGVS AGKTTL
Sbjct: 839 FQPLSLAFEHVNYYVDMPAEMKSQGIEVDRLQLLWDASGAFRPGILTALVGVSSAGKTTL 898
Query: 933 MDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL 992
MDVLAGRKTGGYIEG ISISGYP+ Q TFAR+SGYC QNDIHSP+VT+YESL+YSAWLRL
Sbjct: 899 MDVLAGRKTGGYIEGRISISGYPQDQATFARVSGYCAQNDIHSPHVTVYESLVYSAWLRL 958
Query: 993 PKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1045
D MFVEEVM+LVE+ LRN+LVGLPG+DGLSTEQRKRLT+ VELVANPSIIF
Sbjct: 959 APDVKKETRQMFVEEVMDLVELHPLRNALVGLPGIDGLSTEQRKRLTVGVELVANPSIIF 1018
Query: 1046 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105
MDEPT+GLDARAA IVMRTVRN VDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG +IYA
Sbjct: 1019 MDEPTTGLDARAARIVMRTVRNIVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYA 1078
Query: 1106 GPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYR 1165
GPLGR SHKLVEYFEAVPGVPK+RDG NPATW+LEVSS AVE QL VDFA IYA S+LY+
Sbjct: 1079 GPLGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEVSSAAVEAQLGVDFAEIYAKSELYQ 1138
Query: 1166 RNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTV 1225
RNQ+LIK +S+P+PGSK+LYF TKYSQ FITQCK CFWKQHWSYWRNP YNAIR FLT +
Sbjct: 1139 RNQELIKVISTPSPGSKNLYFPTKYSQSFITQCKACFWKQHWSYWRNPPYNAIRLFLTII 1198
Query: 1226 IGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERA 1285
IG LFG IF +KG++T KEQDLINLLGAM+SAV FLG +N ++V VVAIERTVFYRERA
Sbjct: 1199 IGVLFGAIFRNKGKQTDKEQDLINLLGAMFSAVFFLGTTNTAAVQPVVAIERTVFYRERA 1258
Query: 1286 AGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFT 1345
AGMYS+L+YAFAQV+IEAIYV+IQT +YS LLYSM+GF+W V KFLWFY+++ MCF+YFT
Sbjct: 1259 AGMYSALSYAFAQVAIEAIYVAIQTCLYSFLLYSMMGFYWRVDKFLWFYYYLFMCFIYFT 1318
Query: 1346 LYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGL 1405
LYGMM+VALTP+ QIA I+MSFFLSFWNLFSGF++ R QIPIWWRWYYWASPVAWTIYGL
Sbjct: 1319 LYGMMIVALTPSHQIAAIVMSFFLSFWNLFSGFLIHRMQIPIWWRWYYWASPVAWTIYGL 1378
Query: 1406 VTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIK 1465
VTSQ+GDK V+V G ++VK+YL + G++YDFLGAVA AHIG+V+LF FVF YGIK
Sbjct: 1379 VTSQVGDKEDPVQVPGADDMSVKQYLKEALGFEYDFLGAVALAHIGWVLLFLFVFAYGIK 1438
Query: 1466 FLNFQRR 1472
FL+FQRR
Sbjct: 1439 FLDFQRR 1445
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147855195|emb|CAN83834.1| hypothetical protein VITISV_006821 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2281 bits (5911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1087/1448 (75%), Positives = 1250/1448 (86%), Gaps = 36/1448 (2%)
Query: 38 EAWNNPGDVFAKSGREE--DEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVS 95
E WN P DVF +SGR+E DEEELKWAAIERLPTYDR+RK MLK VL NGRI EVDVS
Sbjct: 30 EVWNAP-DVFQRSGRQEADDEEELKWAAIERLPTYDRMRKGMLKQVLSNGRIVQNEVDVS 88
Query: 96 ELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGT 155
LG QDK+ L+ESILKVVE+DNE+FL RLR+RTDRVGIEIPKIEVRF+ SIEGD YVGT
Sbjct: 89 HLGAQDKRQLMESILKVVEDDNERFLTRLRDRTDRVGIEIPKIEVRFQXFSIEGDGYVGT 148
Query: 156 RALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTL 215
RALPTLLN++LNA+EGV+G + L PSKKR ++IL DVSGI++PSRMTLLLGPP SGKTT
Sbjct: 149 RALPTLLNSTLNAVEGVMGMIGLSPSKKRVVKILQDVSGIIRPSRMTLLLGPPASGKTTF 208
Query: 216 LQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 275
L+ALSG+ D +LR++G++TYCGHE +EFVPQRTCAYISQHDLH+GEMTVRETLDFSGRCL
Sbjct: 209 LKALSGEPDDNLRITGKITYCGHEFSEFVPQRTCAYISQHDLHYGEMTVRETLDFSGRCL 268
Query: 276 GVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADI 335
GVGTR+E+L ELSRREK+AGIKPDPEIDAFMKATAM+G +TSL TDYVLKILGLDICADI
Sbjct: 269 GVGTRYEMLVELSRREKEAGIKPDPEIDAFMKATAMAGQETSLITDYVLKILGLDICADI 328
Query: 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395
MVG+EMRRGISGGQKKRVTTGEMLVGPAKA FMDEISTGLDSSTTFQIV+FM+QMVHI D
Sbjct: 329 MVGDEMRRGISGGQKKRVTTGEMLVGPAKAFFMDEISTGLDSSTTFQIVKFMKQMVHIMD 388
Query: 396 VTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQ 455
+TM+ISLLQPAPETYDLFDDIILLSEG+IVYQGPRE VL+FFE +GFRCPERKG ADFLQ
Sbjct: 389 ITMVISLLQPAPETYDLFDDIILLSEGKIVYQGPRENVLEFFEHMGFRCPERKGVADFLQ 448
Query: 456 EVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVK 515
EVTS+KDQ+QYW +KN+PYRY+SVPEF F +FH+GQ+++++L VPYDKS+ HPA LVK
Sbjct: 449 EVTSKKDQEQYWFRKNQPYRYISVPEFARSFNSFHIGQQISEDLSVPYDKSRAHPAALVK 508
Query: 516 KRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDG 575
++YGISN ELF+ CF+REWLLMKRNSFVY+FKT Q+ IM IA TV+LRT+M GQL D
Sbjct: 509 EKYGISNRELFRACFSREWLLMKRNSFVYIFKTSQLLIMGTIAMTVFLRTEMKSGQLGDA 568
Query: 576 GKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLM 635
KF+GALFFSLVNVMFNGMAELA+T+ RLP F+KQRDFLFFPAWAFALPIWVLRIP+SLM
Sbjct: 569 PKFWGALFFSLVNVMFNGMAELAMTVFRLPVFFKQRDFLFFPAWAFALPIWVLRIPVSLM 628
Query: 636 ESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFT 695
ES IWI+LTYYTIGFAP+A+RFF+Q LAFF VHQM LSLFRFIAA RT VVANTLGTFT
Sbjct: 629 ESGIWIVLTYYTIGFAPAASRFFKQFLAFFGVHQMALSLFRFIAAAGRTPVVANTLGTFT 688
Query: 696 LLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEP 755
LL+VFVLGG++VA+ DI+PWMIWGYY SPM YGQNAI +NEFLDERW+ P P
Sbjct: 689 LLIVFVLGGYVVARVDIEPWMIWGYYASPMMYGQNAIAINEFLDERWNNPVPN----STD 744
Query: 756 TVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDG 815
+VG LLK RG+++++H +WIC+ AL FSL FN+ FIAALT+ +P +TKS+++E N
Sbjct: 745 SVGVTLLKERGLFSDEHWYWICVGALFAFSLLFNVLFIAALTFFNPPGDTKSLLLEDNPD 804
Query: 816 GKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATS----TRKGMVL 871
S++ S+ EGIDMAV N +S ++ +RKGMVL
Sbjct: 805 DNSRRPLTSNN------------------EGIDMAVRNAQGDSSSAISAADNGSRKGMVL 846
Query: 872 PFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTT 931
PFQPLSLAF HVNY+VDMPAEMKS+G+EE+RLQLL+DVSGAFRPG+LTALVGVSGAGKTT
Sbjct: 847 PFQPLSLAFSHVNYYVDMPAEMKSEGVEEDRLQLLRDVSGAFRPGILTALVGVSGAGKTT 906
Query: 932 LMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR 991
LMDVLAGRKTGGYIEGSISISGYPK Q TFAR+SGYCEQNDIHSP VT+YESLLYSAWLR
Sbjct: 907 LMDVLAGRKTGGYIEGSISISGYPKNQATFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 966
Query: 992 LPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044
L D MFVEEVM+LVE+ LR++LVGLPGV GLSTEQRKRLTIAVELVANPSI+
Sbjct: 967 LASDVKDSTRKMFVEEVMDLVELNPLRHALVGLPGVGGLSTEQRKRLTIAVELVANPSIV 1026
Query: 1045 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104
FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG VIY
Sbjct: 1027 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1086
Query: 1105 AGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLY 1164
AGPLGR SHKLVEYFE+VPGV KI++GYNPATW+LE+SS+AVE QL++DFA +YA SDLY
Sbjct: 1087 AGPLGRHSHKLVEYFESVPGVTKIKEGYNPATWMLEISSSAVEAQLDIDFAEVYASSDLY 1146
Query: 1165 RRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTT 1224
RRNQ LIKELS+P PGSKDLYF T+YSQ FITQCK CFWKQH+SYWRN +YNAIRFF+T
Sbjct: 1147 RRNQNLIKELSTPEPGSKDLYFPTQYSQSFITQCKACFWKQHYSYWRNSEYNAIRFFMTI 1206
Query: 1225 VIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRER 1284
VIG LFG+IFW KG++ K+QDLINLLGA Y+AVLFLGA+NA+SV SVVA+ERTVFYRER
Sbjct: 1207 VIGVLFGVIFWSKGDQIHKQQDLINLLGATYAAVLFLGATNATSVQSVVAVERTVFYRER 1266
Query: 1285 AAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYF 1344
AAGMYS L YAFAQV+IE IYV+IQT+VY+LLLYSMIGFHW+V KF +FY+F+ MCF YF
Sbjct: 1267 AAGMYSELPYAFAQVAIETIYVAIQTLVYALLLYSMIGFHWKVDKFFYFYYFIFMCFTYF 1326
Query: 1345 TLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYG 1404
++YGMM+VALTP QIA I+ SFFLSFWNLFSGF++PR IPIWWRWYYW SPVAWTIYG
Sbjct: 1327 SMYGMMVVALTPGHQIAAIVSSFFLSFWNLFSGFLIPRPLIPIWWRWYYWGSPVAWTIYG 1386
Query: 1405 LVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGI 1464
+ SQ+GD +++E+ G S + V E++ ++ G+D+DFL V AH+G+V LFFFVF YGI
Sbjct: 1387 IFASQVGDITTDLEITGSSPMPVNEFIKENLGFDHDFLVPVVFAHVGWVFLFFFVFAYGI 1446
Query: 1465 KFLNFQRR 1472
KFLNFQRR
Sbjct: 1447 KFLNFQRR 1454
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572530|ref|XP_003554421.1| PREDICTED: ABC transporter G family member 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2277 bits (5901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1072/1461 (73%), Positives = 1246/1461 (85%), Gaps = 44/1461 (3%)
Query: 22 SFSSASKKGWASASLREAWNNPGDVFAKSGR---EEDEEELKWAAIERLPTYDRVRKTML 78
+ S++S++ W +AS R+AW DVF SGR E+DEEELKWAAI+RLPT++R+RK +L
Sbjct: 11 AVSTSSRRSWTTASFRDAWTAAPDVFNVSGRHVYEDDEEELKWAAIDRLPTFERMRKGVL 70
Query: 79 KHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKI 138
KHVL++G + +EVDVS L + DKK L++SILK+VEEDNEKFL RLR R DRVGIEIPKI
Sbjct: 71 KHVLDDGHVMLDEVDVSNLCLHDKKLLIDSILKIVEEDNEKFLRRLRNRVDRVGIEIPKI 130
Query: 139 EVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKP 198
EVR ENLS+EGD +VG+RALPTLLN +LNA E VLG L PSKKR+++IL DVSGIVKP
Sbjct: 131 EVRCENLSVEGDVHVGSRALPTLLNATLNAFESVLGMFHLAPSKKREIQILKDVSGIVKP 190
Query: 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLH 258
SRMTLLLGPP SGKTTLL AL+GK D+ LRVSGR+TYCGHEL EFVPQ+TCAYISQHD+H
Sbjct: 191 SRMTLLLGPPSSGKTTLLLALAGKLDRDLRVSGRITYCGHELNEFVPQKTCAYISQHDIH 250
Query: 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSL 318
+GEMTVRETLDFSGRCLGVGTR+E L ELSRRE++AGIKPDPEIDAFMKA A+SG KT+L
Sbjct: 251 YGEMTVRETLDFSGRCLGVGTRYEALVELSRREREAGIKPDPEIDAFMKAIALSGQKTNL 310
Query: 319 GTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSS 378
TDYVLKILGLDICADI+VG+EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSS
Sbjct: 311 VTDYVLKILGLDICADIVVGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSS 370
Query: 379 TTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFE 438
TTFQI +FMRQMVH+ DVTM+ISLLQPAPET++LFDDIILLSEG+IVYQGPRE L+FFE
Sbjct: 371 TTFQICKFMRQMVHVMDVTMVISLLQPAPETFELFDDIILLSEGQIVYQGPRENGLEFFE 430
Query: 439 SVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDE 498
+GF+CPERKG DFLQEVTS+KDQQQYW +K+EPYRYVSV EFV+ F +F +G++L E
Sbjct: 431 HMGFKCPERKGVTDFLQEVTSKKDQQQYWSRKDEPYRYVSVSEFVQAFSSFDIGEQLATE 490
Query: 499 LRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIA 558
L VPYDK + HPA LVK +YGI+NWELFK CF+REWLLMKR+SFVY+FKT QITIMSII
Sbjct: 491 LGVPYDKRQAHPAALVKDKYGITNWELFKACFSREWLLMKRSSFVYIFKTTQITIMSIIT 550
Query: 559 FTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPA 618
FTV+LRT+M+ G + DG KF+GALFFSL+NVMFNGMAEL++T+ RLP FYKQRDF F+PA
Sbjct: 551 FTVFLRTEMSVGTVEDGQKFFGALFFSLINVMFNGMAELSMTVFRLPVFYKQRDFRFYPA 610
Query: 619 WAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFI 678
WAF LPIW+LRIPLS+MES IWI LTYYTIGFAPSA+RF RQ LA F++HQM LSLFRF+
Sbjct: 611 WAFGLPIWLLRIPLSIMESGIWIALTYYTIGFAPSASRFIRQFLALFAIHQMALSLFRFL 670
Query: 679 AAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFL 738
AA RT VVANTLGT +L LVFVLGGF++AKDDI+PWM+WGYY+SPM YGQNAIV+NEFL
Sbjct: 671 AAAGRTLVVANTLGTLSLQLVFVLGGFVIAKDDIEPWMMWGYYLSPMMYGQNAIVMNEFL 730
Query: 739 DERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTY 798
D+RWS PN ++ PTVGK LLK+RG YTE++ FWICI ALLGFSL FNL FI ALTY
Sbjct: 731 DKRWSKPNTDP-RINAPTVGKVLLKSRGFYTEEYWFWICIGALLGFSLLFNLLFIVALTY 789
Query: 799 LDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNS 858
L+P +K+V+ + EG DMAV + + +
Sbjct: 790 LNPLGYSKAVIAD---------------------------------EGTDMAVKESSEMA 816
Query: 859 IIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVL 918
R+GMVLPFQPLSLAF+H++Y+VDMPAEM+S+GI ++RLQLLQDVSGAFRPG+L
Sbjct: 817 SSLNQEPRRGMVLPFQPLSLAFNHISYYVDMPAEMRSRGINKDRLQLLQDVSGAFRPGIL 876
Query: 919 TALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978
TALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK Q TFARISGYCEQNDIHSP+V
Sbjct: 877 TALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPHV 936
Query: 979 TIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031
T+YESLL+SAWLRLP D MFVEEVMELVE+ +R++LVGLPGVDGLSTEQRKRL
Sbjct: 937 TVYESLLFSAWLRLPSDVNAQKRKMFVEEVMELVELNQIRDALVGLPGVDGLSTEQRKRL 996
Query: 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1091
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 997 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1056
Query: 1092 ELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLN 1151
E+ LMKRGG VIYAGPLGR SHKL+EYFE +PGVPKI+DGYNPA+W+L++SS +E L
Sbjct: 1057 EILLMKRGGQVIYAGPLGRHSHKLIEYFEGIPGVPKIKDGYNPASWMLDISSTTMEANLE 1116
Query: 1152 VDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWR 1211
VDFA IYA S LYRRNQ+LI+ELS+P P SKDL+F TKYSQ F QCK FWKQ+WSYWR
Sbjct: 1117 VDFAEIYAKSTLYRRNQELIEELSTPVPDSKDLHFPTKYSQSFFVQCKANFWKQYWSYWR 1176
Query: 1212 NPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTS 1271
P+YNA+RFF+T V+G +FG+IFW+K +KT K+QDL+NLLG MY+A+LFLGA NASSV
Sbjct: 1177 YPQYNAVRFFMTIVVGVMFGVIFWNKAKKTHKQQDLMNLLGGMYAAMLFLGAMNASSVQP 1236
Query: 1272 VVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFL 1331
VVAIERT+FYRERAAGMYS+L YAF QV+IEAIY +IQT VYSL+LYSMIGF W+ T F
Sbjct: 1237 VVAIERTIFYRERAAGMYSALPYAFGQVAIEAIYNAIQTAVYSLILYSMIGFDWKATSFF 1296
Query: 1332 WFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRW 1391
WFY+++LMCFMYFTLYGMM+VALTP Q+A I MSFFLSFWNLFSGF++PRTQIP+WWRW
Sbjct: 1297 WFYYYILMCFMYFTLYGMMIVALTPGHQVAAICMSFFLSFWNLFSGFIIPRTQIPVWWRW 1356
Query: 1392 YYWASPVAWTIYGLVTSQIGDKVSEVEVAGESGITVKEYLYKHYGYDYDFLGAVAAAHIG 1451
YYWASPV+WT+YGL+TSQ+GDK +E+E+ G + +KE+L ++ G+DYDFL VAAAH+G
Sbjct: 1357 YYWASPVSWTLYGLITSQLGDKNAELEIPGAGSMGLKEFLKQNLGFDYDFLPVVAAAHVG 1416
Query: 1452 FVVLFFFVFVYGIKFLNFQRR 1472
+V+LF FVF YGIKFLNFQRR
Sbjct: 1417 WVILFMFVFAYGIKFLNFQRR 1437
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1472 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.968 | 0.970 | 0.541 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.957 | 0.992 | 0.492 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.597 | 0.604 | 0.624 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.622 | 0.631 | 0.596 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.566 | 0.578 | 0.516 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.524 | 0.542 | 0.532 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.531 | 0.552 | 0.537 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.521 | 0.538 | 0.497 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.504 | 0.525 | 0.496 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.532 | 0.540 | 0.469 | 0.0 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4006 (1415.2 bits), Expect = 0., P = 0.
Identities = 786/1451 (54%), Positives = 1006/1451 (69%)
Query: 39 AWNNPGDVFAKSGRE-----EDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYE--- 90
A N D+F+ R +DEE LKWAAIE+LPTY R+R T++ V+E+ G +
Sbjct: 28 ASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMS 87
Query: 91 -EVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEG 149
EVDV++L +D++ ++ + KV E+DNE+ L +LR R DRVGI++P +EVR+E+L+I+
Sbjct: 88 KEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKA 147
Query: 150 DAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPG 209
D Y G R+LPTLLN N E LG + + +KK +L IL D+SG++KP RMTLLLGPP
Sbjct: 148 DCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPS 207
Query: 210 SGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLD 269
SGKTTLL AL+GK DKSL+VSG +TY G++L EFVP++T AYISQ+DLH G MTV+ETLD
Sbjct: 208 SGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLD 267
Query: 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGL 329
FS RC GVGTR++LL EL+RREKDAGI P+ ++D FMKA+A G+K SL TDY LKILGL
Sbjct: 268 FSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGL 327
Query: 330 DICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ 389
DIC D +VG++M RGISGGQKKRVTTGEM+VGP K LFMDEISTGLDSSTTFQIV+ ++Q
Sbjct: 328 DICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQ 387
Query: 390 MVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKG 449
+VH+ + T+++SLLQPAPET+DLFDDIIL+SEG+IVYQGPR+ +L+FFES GF+CPERKG
Sbjct: 388 IVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKG 447
Query: 450 AADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTH 509
ADFLQEVTS+KDQ+QYW N PY Y+ V EF +K+FHVG K+++EL VP+DKS+ H
Sbjct: 448 TADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGH 507
Query: 510 PAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTY 569
A LV +Y +S EL K+C+ +EWLLM+RN+F YVFKT QI I++ I T++LRT+M
Sbjct: 508 KAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNT 567
Query: 570 GQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWVLR 629
D + GAL F ++ MFNG AE+A+ + RLP FYKQRD ++L
Sbjct: 568 RNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLG 627
Query: 630 IPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVAN 689
IP S++ES+ W+++TYY+IGFAP A+RFF+Q L F + QM SLFR IA+V RT ++AN
Sbjct: 628 IPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIAN 687
Query: 690 XXXXXXXXXXXXXXXXXXAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPAR 749
K I W W Y+VSP++Y N +V+NE RW N
Sbjct: 688 TGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWM--NKMA 745
Query: 750 FLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVM 809
+G +L +Y + + +WI + ALL F+ FN+ F ALTYL+P + ++
Sbjct: 746 SSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLL 805
Query: 810 MEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGM 869
E + + Q ++++ AD + + M+ + + S G +KGM
Sbjct: 806 PEEEN--EDADQGKDPMRRSLSTADGNRRGEVAMGR---MSRDSAAEAS--GGAGNKKGM 858
Query: 870 VLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGK 929
VLPF PL+++FD V YFVDMP EM+ QG+ E RLQLL+ V+GAFRPGVLTAL+GVSGAGK
Sbjct: 859 VLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGK 918
Query: 930 TTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW 989
TTLMDVLAGRKT PK QETFARISGYCEQ DIHSP VT+ ESL++SA+
Sbjct: 919 TTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAF 978
Query: 990 LRLPKDXXXXXXXXXXXX-------KALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS 1042
LRLPK+ +LR+S+VGLPGV GLSTEQRKRLTIAVELVANPS
Sbjct: 979 LRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPS 1038
Query: 1043 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102
IIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG V
Sbjct: 1039 IIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQV 1098
Query: 1103 IYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSD 1162
IYAGPLG+ SHK+VEYFE+ PGV KI + YNPATW+LE SS A E +L+VDFA +Y S
Sbjct: 1099 IYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSA 1158
Query: 1163 LYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFL 1222
L++RN+ L+KELS P G+ DLYF T++SQ+ Q K+C WKQ W+YWR+P YN +RF
Sbjct: 1159 LHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIF 1218
Query: 1223 TTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGXXXXXXXXXXXXIERTVFYR 1282
T L G +FW G S DL ++GA+Y+A++F+G +ERTVFYR
Sbjct: 1219 TLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYR 1278
Query: 1283 ERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKXXXXXXXXXXXXX 1342
ERAAGMYS++ YA +QV+ E YV IQT+ YSL++Y+M+GF W+ K
Sbjct: 1279 ERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFL 1338
Query: 1343 XXXXXGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTI 1402
GMM V+LTPNQQ+A+I S F +NLFSGF +PR +IP WW WYYW PVAWT+
Sbjct: 1339 YWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTV 1398
Query: 1403 YGLVTSQIGDKVSEVEVAGES-GITVKEYLYKHYGYDYDFLGAVAAAHIGXXXXXXXXXX 1461
YGL+ SQ GD + ++V G + +TVK+Y+ HYG+ DF+G VAA I
Sbjct: 1399 YGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFA 1458
Query: 1462 YGIKFLNFQRR 1472
+ I+ LNFQ R
Sbjct: 1459 FCIRTLNFQTR 1469
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3606 (1274.4 bits), Expect = 0., P = 0.
Identities = 710/1443 (49%), Positives = 958/1443 (66%)
Query: 40 WNNPGDVFAKSGREEDEEELKWAAIERLPTYDRVRK-TMLKHVLENGRIGY-EEVDVSEL 97
WN+ + F++S +DE E + R R+ + ++ + +G +E+ + L
Sbjct: 2 WNSAENAFSRSTSFKDEIEDEEEL--RWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNL 59
Query: 98 GMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRA 157
+++ LL+ ++ VE D E+F R+R+R D V ++ PKIEVRF+NL +E +VG+RA
Sbjct: 60 EASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRA 119
Query: 158 LPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQ 217
LPT+ N +N EG+L + + K+ KL IL +SG+++PSR+TLLLGPP SGKTTLL
Sbjct: 120 LPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLL 179
Query: 218 ALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 277
AL+G+ +L+ SG++TY G++L E + RT AY+SQ D H EMTVR+TL+F+GRC GV
Sbjct: 180 ALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGV 239
Query: 278 GTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337
G ++++L EL+RREK AGI PD ++D FMK+ A+ G++TSL +YV+KILGLD CAD +V
Sbjct: 240 GFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLV 299
Query: 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT 397
G+EM +GISGGQKKR+TTGE+LVGPA+ LFMDEIS GLDSSTT QI+ +MR H + T
Sbjct: 300 GDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGT 359
Query: 398 MIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEV 457
+ISLLQP+PETY+LFDD+IL+SEG+I+YQGPR+ VLDFF S+GF CP+RK ADFLQEV
Sbjct: 360 TVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEV 419
Query: 458 TSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKR 517
TS+KDQQQYW PYRYV +F E F+++ G+KL +L VP+DK H A L +
Sbjct: 420 TSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQ 479
Query: 518 YGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGK 577
YG+ EL K FA + LMK+N+F+YVFK Q+ ++++I TV+ RT M + + DG
Sbjct: 480 YGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNI 539
Query: 578 FYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWVLRIPLSLMES 637
+ G+L+FS+V ++FNG E+ + + +LP YK RD W+L IP S++ES
Sbjct: 540 YLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIES 599
Query: 638 SIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANXXXXXXXX 697
+ W+ +TYYTIG+ P +RF +Q L +FS+HQM L LFR + ++ R +VAN
Sbjct: 600 ATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAML 659
Query: 698 XXXXXXXXXXAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTV 757
++D I W IWGY++SP+ Y QNA +NEFL W D ++
Sbjct: 660 VVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQK-TAGNHTSD--SL 716
Query: 758 GKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGK 817
G ALLK R +++ ++ +WI + ALLG+++ FN+ F L +L+P+ + ++V+ +
Sbjct: 717 GLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDER 776
Query: 818 SKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLS 877
KK+ +R E + + SI G +GMVLPFQPLS
Sbjct: 777 EKKRKGDEFVVELR-------------EYLQHS------GSIHGKYFKNRGMVLPFQPLS 817
Query: 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937
L+F ++NY+VD+P +K QGI E+RLQLL +++GAFRPGVLTALVGVSGAGKTTLMDVLA
Sbjct: 818 LSFSNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLA 877
Query: 938 GRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDXX 997
GRKT PK+QETFARISGYCEQND+HSP +T+ ESLL+SA LRLP D
Sbjct: 878 GRKTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADID 937
Query: 998 XXXXXXXXXX-------KALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050
+L +LVGLPGVDGLSTEQRKRLTIAVELVANPSI+FMDEPT
Sbjct: 938 SETQRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPT 997
Query: 1051 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110
SGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDEL MKRGG +IYAGPLG+
Sbjct: 998 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQ 1057
Query: 1111 QSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRNQQL 1170
+S +L++YFE++ GV KI+ G+NPA W+L+V+++ E +L VDFA IY +S+L +RN++L
Sbjct: 1058 KSCELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKEL 1117
Query: 1171 IKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALF 1230
I+ LS P+ +K++ F T+YSQ +Q C WKQ+ SYWRNP+Y A+RFF T VI +
Sbjct: 1118 IEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLML 1177
Query: 1231 GMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGXXXXXXXXXXXXIERTVFYRERAAGMYS 1290
G I W G K +Q L N +G+MY+AVLF+G IER V YRERAAGMYS
Sbjct: 1178 GTICWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYS 1237
Query: 1291 SLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKXXXXXXXXXXXXXXXXXXGMM 1350
+L +AFAQV IE YV Q+ +YS + Y+M F W K GMM
Sbjct: 1238 ALPFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMM 1297
Query: 1351 LVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQI 1410
A+TPN +A+I+ + F WNLFSGFM+P +IP+WWRWYYWA+PVAWT+YGL+ SQ
Sbjct: 1298 TTAITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQY 1357
Query: 1411 GDKVSEVEVA-GESGITVKEYLYKHYGYDYDFLGAVAAAHIGXXXXXXXXXXYGIKFLNF 1469
GD V+++ G + VK+ L GY +DFLG A + + IK NF
Sbjct: 1358 GDDERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNF 1417
Query: 1470 QRR 1472
QRR
Sbjct: 1418 QRR 1420
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2836 (1003.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 557/892 (62%), Positives = 674/892 (75%)
Query: 45 DVFAKSGR-EEDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKK 103
+VF +S R EED+ EL+WAAIERLPT+DR+RK ML NG+I E++D++ L +DKK
Sbjct: 46 EVFGRSERREEDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKK 105
Query: 104 NLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLN 163
+L+E IL VEEDNEKFL LRERTDRVGIE+PKIEVR+EN+S+EGD +RALPTL N
Sbjct: 106 HLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFN 165
Query: 164 TSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223
+LN +E +LGF L PSK++K++IL D+SGIVKPSRMTLLLGPP SGKTTLLQAL+GK
Sbjct: 166 VTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKL 225
Query: 224 DKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFEL 283
D +L++SGR+TYCGHE EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+R++L
Sbjct: 226 DDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQL 285
Query: 284 LAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343
++ELSRREK+ GIKPDP+IDAFMK+ A+SG +TSL TDYVLKILGLDICADI+ G+ MRR
Sbjct: 286 MSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRR 345
Query: 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL 403
GISGGQKKR+TTGEMLVGPA+ALFMDEISTGLDSSTTFQI +FMRQ+VHI+DVTMIISLL
Sbjct: 346 GISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLL 405
Query: 404 QPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQ 463
QPAPET++LFDDIILLSEG+IVYQGPR+ VL+FFE GF+CPERKG ADFLQEVTS+KDQ
Sbjct: 406 QPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQ 465
Query: 464 QQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNW 523
+QYW K+ +PY YVSV +F F TFH GQKLT E RVPYDK+KTH A LV ++YGISNW
Sbjct: 466 EQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNW 525
Query: 524 ELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALF 583
ELFK CF REWLLMKRNSFVYVFKT QITIMS+I TVYLRT+M G + DG KFYGA+F
Sbjct: 526 ELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMF 585
Query: 584 FSLVNVMFNGMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWVLRIPLSLMESSIWILL 643
FSL+NVMFNG+AELA T++RLP FYKQRD W+L+IPLSL+ES IWI L
Sbjct: 586 FSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGL 645
Query: 644 TYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANXXXXXXXXXXXXXX 703
TYYTIGFAPSA RFFRQLLA+F V+QM LSLFRF+ A+ RT+V++N
Sbjct: 646 TYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLG 705
Query: 704 XXXXAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPN-PARFLVDEPTVGKALL 762
AKDDI+PWM W YY+SPM YGQ AIV+NEFLDERWS+PN R ++ TVG+ LL
Sbjct: 706 GFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTR--INAKTVGEVLL 763
Query: 763 KARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHN-DGGKSKKQ 821
K+RG +TE + FWICIVALLGFSL FNL +I AL YL+P +K+ ++E D K + +
Sbjct: 764 KSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENR 823
Query: 822 SNSHAQQNMRAADMSPPSTAPL--FEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLA 879
+ + ++ P + F+ + +A N N + S K + L L
Sbjct: 824 GTEGSVVELNSSSNKGPKRGMVLPFQPLSLAFNNV--NYYVDMPSEMKAQGVEGDRLQLL 881
Query: 880 FDHVNYFVDMPAEMKSQ-GIEENRLQLLQDV-SGAFRPGVLTALVGVSGAGK 929
D F P + + G+ L DV +G G + + +SG K
Sbjct: 882 RDVGGAF--RPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 931
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2787 (986.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 557/934 (59%), Positives = 676/934 (72%)
Query: 4 DDLARTLSINXXXXXXXXXXXXXXXXXXXXXXLREAWNNP-GDVFAKSGR-EEDEEELKW 61
+DL RT+S R+ + P DVF +S R EED+ EL+W
Sbjct: 6 EDLVRTMS----GRGSLGSTSHRSLAGAASKSFRDVFAPPTDDVFGRSDRREEDDVELRW 61
Query: 62 AAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFL 121
AA+ERLPTYDR+RK ML + NG+IG E+VDV+ L ++KK+L+E ILK VEEDNEKFL
Sbjct: 62 AALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFL 121
Query: 122 LRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPS 181
RLRERTDRVGIE+PKIEVR+ENLS+EGD +RALPTL N +LN IE +LG L PS
Sbjct: 122 RRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPS 181
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT 241
KKRK+EIL D+SGI+KPSRMTLLLGPP SGKTTLLQAL+GK D +L++SGR+TYCGHE
Sbjct: 182 KKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFR 241
Query: 242 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
EFVPQ+TCAYISQHDLH GEMTVRE+LDFSGRCLGVGTR++LL ELSRRE++AGIKPDPE
Sbjct: 242 EFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPE 301
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
IDAFMK+ A+SG +TSL TDYVLK+LGLDICAD +VG+ MRRGISGGQ+KR+TTGEMLVG
Sbjct: 302 IDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVG 361
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421
PA ALFMDEISTGLDSSTTFQI +FMRQ+VHI DVTM+ISLLQPAPET++LFDDIILLSE
Sbjct: 362 PATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSE 421
Query: 422 GEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPE 481
G+IVYQG R+ VL+FFE +GF+CPERKG ADFLQEVTS+KDQ+QYW ++ PY YVSV +
Sbjct: 422 GQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHD 481
Query: 482 FVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNS 541
F F +FH GQ+L E RVPYDK+KTHPA LV ++YGISN +LFK CF REWLLMKRNS
Sbjct: 482 FSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNS 541
Query: 542 FVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTI 601
FVYVFKT QITIMS+IA TVY RT+M G + DG KFYGALFFSL+N+MFNGMAELA T+
Sbjct: 542 FVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTV 601
Query: 602 VRLPAFYKQRDXXXXXXXXXXXXIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQL 661
+RLP F+KQRD ++L+IPLSL+ES IWI LTYYTIGFAPSA RFFRQL
Sbjct: 602 MRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQL 661
Query: 662 LAFFSVHQMGLSLFRFIAAVSRTQVVANXXXXXXXXXXXXXXXXXXAKDDIKPWMIWGYY 721
LA+F V+QM LSLFRF+ A+ RT+V+AN +KDDI W+ W YY
Sbjct: 662 LAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYY 721
Query: 722 VSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVAL 781
SPM YGQ A+V+NEFLDERW +PN ++ TVG+ LLK+RG +TE + FWICI AL
Sbjct: 722 TSPMMYGQTALVINEFLDERWGSPNNDT-RINAKTVGEVLLKSRGFFTEPYWFWICIGAL 780
Query: 782 LGFSLFFNLCFIAALTYLDPFKETKS--VMMEHNDGGKSKKQSNSHAQQNMRAADMSPPS 839
LGF++ FN C+I AL YL+P +K+ V+ E D K + + + P
Sbjct: 781 LGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSVVELTSTSSHGPK 840
Query: 840 TAPL--FEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQ- 896
+ F+ + +A N N + + K + L L D F P + +
Sbjct: 841 KGMVLPFQPLSLAFNNV--NYYVDMPAEMKAQGVEGDRLQLLRDVGGAF--RPGVLTALV 896
Query: 897 GIEENRLQLLQDV-SGAFRPGVLTALVGVSGAGK 929
G+ L DV +G G + + +SG K
Sbjct: 897 GVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPK 930
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2201 (779.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 443/857 (51%), Positives = 585/857 (68%)
Query: 38 EAWNNPGDVFAKSGRE-----EDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYE-- 90
+A N D+F S R EDEE LKWA+IE+LPTY+R+R +++ + E+ G +
Sbjct: 25 KASRNMEDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQIL 84
Query: 91 --EVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIE 148
VDV++L ++++ ++ + KV E+DNE+ L +LR R DRVGI++P +EVR+++L+++
Sbjct: 85 NKAVDVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVK 144
Query: 149 GDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPP 208
D Y G R+LP+LLN N E LG + + +KK +L IL DVSGIVKPSRMTLLLGPP
Sbjct: 145 ADCYTGDRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPP 204
Query: 209 GSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETL 268
SGKTTLL AL+GK DKSL VSG VTY G+ L EFVP +T AYISQ+DLH G MTV+ETL
Sbjct: 205 SSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETL 264
Query: 269 DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG 328
DFS RC GVGTR++LL EL+RREKDAGI P+ ++D FMKA+A G+K+SL TDY LKILG
Sbjct: 265 DFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILG 324
Query: 329 LDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMR 388
LDIC D +VG++M RGISGGQKKRVTTGEM+VGP K LFMDEISTGLDSSTTFQIV+ ++
Sbjct: 325 LDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQ 384
Query: 389 QMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERK 448
Q+VH+T+ T++ISLLQPAPET+DLFDDIILLSEG+IVYQGPR+++L+FFES GF+CPERK
Sbjct: 385 QIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERK 444
Query: 449 GAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKT 508
G ADFLQEVTS+KDQ+QYW N PYRY+ V EF FK FHVG KL++EL VPYDKSK+
Sbjct: 445 GTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKS 504
Query: 509 HPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMT 568
H A L+ +Y I EL K+C+ +EW+LMKRNSF YVFKT QI I++ I T+YLRT+M
Sbjct: 505 HKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMH 564
Query: 569 YGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWVL 628
ID + G+L F+++ MFNG+AE+A+TI RLP FYKQRD ++L
Sbjct: 565 TRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLL 624
Query: 629 RIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVA 688
IP+S+ ES+ W+++TYY+IG+AP A RFF+Q L F + QM +FRFIA+ RT +A
Sbjct: 625 GIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIA 684
Query: 689 NXXXXXXXXXXXXXXXXXXAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPA 748
N + +I W W Y++SP+SY NAI +NE RW
Sbjct: 685 NTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSG 744
Query: 749 RFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSV 808
+G ++L ++ + + +WI + LLGF++ FN F ALTYLDP + +++
Sbjct: 745 N---STTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAI 801
Query: 809 M-MEHNDGGKSKKQSNSHAQQNMRAAD--MSPPSTAPL---FEGIDMAVMNTPDNSIIGA 862
+ E ++ K K SN + +A M P T PL F+ + V + G
Sbjct: 802 LPKEEDEEAKGKAGSNKETEMESVSAKKGMVLPFT-PLAMSFDDVKYFVDMPAEMREQGV 860
Query: 863 TSTR----KGMVLPFQP 875
TR KG+ F+P
Sbjct: 861 QETRLQLLKGVTSAFRP 877
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2188 (775.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 415/779 (53%), Positives = 566/779 (72%)
Query: 45 DVFAKSGREEDEEE-LKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKK 103
++F++S REED+EE L+WAA+E+LPT+DR+RK +L G I E+D+ +LG QD K
Sbjct: 27 EIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPIN--EIDIQKLGFQDTK 84
Query: 104 NLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLN 163
LLE ++KV ++++EK L +L++R DRVGI++P IEVRF++L +E + +VG RALPT +N
Sbjct: 85 KLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRALPTFVN 144
Query: 164 TSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223
N + L L L P++K+K IL+DVSGIVKP RM LLLGPP SGKTTLL AL+GK
Sbjct: 145 FISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKL 204
Query: 224 DKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFEL 283
D+ L+ +GRVTY GH + EFVPQRT AYI Q+D+H GEMTVRET ++ R GVG+R+++
Sbjct: 205 DQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDM 264
Query: 284 LAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343
L EL+RREK+A IKPDP+ID FMKA + +G KT++ TDY+LKILGL++CAD MVG++M R
Sbjct: 265 LTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLR 324
Query: 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL 403
GISGGQKKRVTTGEMLVGP++ALFMDEISTGLDSSTT+QIV +R VHI + T +ISLL
Sbjct: 325 GISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLL 384
Query: 404 QPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQ 463
QPAPET++LFDDIIL++EGEI+Y+GPR++V++FFE++GF+CP RKG ADFLQEVTS+KDQ
Sbjct: 385 QPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQ 444
Query: 464 QQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNW 523
QYW +++EPYR++ V EF E F++FHVG+++ DEL +P+DK+K+HPA L K+YG+
Sbjct: 445 MQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIK 504
Query: 524 ELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALF 583
EL KT F+RE+LLMKRNSFVY FK Q+ +M+ + T++ RT+M +DG + GALF
Sbjct: 505 ELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALF 564
Query: 584 FSLVNVMFNGMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWVLRIPLSLMESSIWILL 643
F L+ +MFNGM+EL++TI +LP FYKQRD W+L+IP+S ME+++ +
Sbjct: 565 FILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFI 624
Query: 644 TYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANXXXXXXXXXXXXXX 703
TYY IGF P+ R F+Q + ++QM +LF+ +AA+ R +VAN
Sbjct: 625 TYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALG 684
Query: 704 XXXXAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLK 763
++DDIK W IWGY++SP+ YGQNAI+ NEF WS T+G LK
Sbjct: 685 GVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVEN----SSETLGVTFLK 740
Query: 764 ARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQS 822
+RG + +WI ALLGF + FN F ALT+L+ + ++V+ E +++ QS
Sbjct: 741 SRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQS 799
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2137 (757.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 429/798 (53%), Positives = 562/798 (70%)
Query: 53 EEDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKV 112
+ DEE LKWAA+E+LPT+ R+R T++ H E + VDV++LG+ D++ ++SI KV
Sbjct: 34 DHDEEALKWAALEKLPTFARLRTTII-HPHE------DLVDVTKLGVDDRQKFIDSIFKV 86
Query: 113 VEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGV 172
EEDNEKFL + R R DRV I++P +EVRFE ++IE + ++G RALPTL N +LN E
Sbjct: 87 TEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPTLPNAALNIAERG 146
Query: 173 LGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGR 232
L L +K K+ IL DVSGI+KPSRMTLLLGPP SGKTTLL AL+GK D+SL+V+GR
Sbjct: 147 LRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSLKVTGR 206
Query: 233 VTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREK 292
VTY GH L EFVPQ+T AYISQ+D+H G MTV+ETLDFS RC GVGTR++LL+EL RREK
Sbjct: 207 VTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELVRREK 266
Query: 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKR 352
DAGI P+PE+D FMK+ A +K+SL TDY L+ILGLDIC D +VG+EM RGISGGQKKR
Sbjct: 267 DAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGGQKKR 326
Query: 353 VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL 412
VTTGEM+VGP K LFMDEISTGLDSSTT+QIV+ ++++V TD T+++SLLQPAPET++L
Sbjct: 327 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAPETFEL 386
Query: 413 FDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNE 472
FDDIILLSEG+IVYQGPR++VL FFE+ GF+CP+RKG ADFLQEVTSRKDQ+QYW +
Sbjct: 387 FDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYWADSKK 446
Query: 473 PYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAR 532
PY Y+SV EF + F+TFHVG L +L VPYD+ K+HPA LV K++ + +LFK C+ R
Sbjct: 447 PYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFKVCWDR 506
Query: 533 EWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFN 592
E LLMKRN+F Y+ KT QI IM++IA TVYLRT+M DG + GAL FS++ MFN
Sbjct: 507 ELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMIVNMFN 566
Query: 593 GMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWVLRIPLSLMESSIWILLTYYTIGFAP 652
G AELAL I RLP FYKQRD ++L IP+S+ ES +W+ +TYY IGFAP
Sbjct: 567 GFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYMIGFAP 626
Query: 653 SATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANXXXXXXXXXXXXXXXXXXAKDDI 712
+RF + LL F QM +FRFIAA R+ ++AN + +I
Sbjct: 627 ELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRGEI 686
Query: 713 KPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPT-VGKALLKARGMYTED 771
W W Y+VSPM+Y +A+ +NE L RW P+ D T +G A+L+ ++T+
Sbjct: 687 PKWWKWAYWVSPMAYTYDALTVNEMLAPRW-INQPSS---DNSTSLGLAVLEIFDIFTDP 742
Query: 772 HMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHN-DGGKSKKQSNSHAQQNM 830
+ +WI + +LGF++ FN+ ALT+L+P ++ ++V+ + N + +++ S S +
Sbjct: 743 NWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAENGSKSKSIDVK 802
Query: 831 RAADMSPPSTAPLFEGID 848
R M P T PL D
Sbjct: 803 RG--MVLPFT-PLTMSFD 817
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1995 (707.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 390/784 (49%), Positives = 526/784 (67%)
Query: 37 REAWNNPGDVFAKSGREEDEEELKWAAIERLPTYDR-VRKTMLKHV-LENGRIGYEE--- 91
RE++ P + A++ E+DEE+L+WAAI RLP+ + +L+ + GY +
Sbjct: 19 RESFARPSN--AETV-EQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNV 75
Query: 92 ---VDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIE 148
+DV +L D++ L+ L ++DN K L ++ER DRVG+E+PKIEVRFENL+IE
Sbjct: 76 VQTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIE 135
Query: 149 GDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPP 208
D GTRALPTL+N S + E L LR+ +K KL IL D+SGI+KP RMTLLLGPP
Sbjct: 136 ADVQAGTRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPP 195
Query: 209 GSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETL 268
GSGK+TLL AL+GK DKSL+ +G +TY G L +F +RT AYISQ D H E+TVRETL
Sbjct: 196 GSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETL 255
Query: 269 DFSGRCLGVGTRFE-LLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL 327
DF+ RC G F + +L+R EK+ GI+P EIDAFMKA ++ G K S+ TDYVLK+L
Sbjct: 256 DFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVL 315
Query: 328 GLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFM 387
GLD+C+D MVGN+M RG+SGGQ+KRVTTGEM VGP K LFMDEISTGLDSSTTFQIV+ +
Sbjct: 316 GLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCI 375
Query: 388 RQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPER 447
R VH+ D T++++LLQPAPET+DLFDD+ILLSEG +VYQGPRE V+ FFES+GFR P R
Sbjct: 376 RNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPR 435
Query: 448 KGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSK 507
KG ADFLQEVTS+KDQ QYW ++PY+++ V + F+ G +L P+DK
Sbjct: 436 KGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKS 495
Query: 508 THPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQM 567
P+ L + ++ IS WE K CF RE LL+KR+ F+Y F+T Q+ + ++ TV+L+T++
Sbjct: 496 ADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRL 555
Query: 568 TYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWV 627
G ++ LFF LV++MFNG +EL L I RLP FYKQRD W+
Sbjct: 556 HPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWL 615
Query: 628 LRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVV 687
LR+P S++E+ +W + Y+T+G APSA RFFR +L FSVHQM L LFR +A+++R V+
Sbjct: 616 LRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVI 675
Query: 688 ANXXXXXXXXXXXXXXXXXXAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNP 747
AN K DIKPW +WG++VSP+SYGQ AI +NEF RW P+
Sbjct: 676 ANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSA 735
Query: 748 ARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKS 807
+ + T+G LLK R T D+ +WI I L+G+++ FN AL YL+P ++ ++
Sbjct: 736 ----ISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARA 791
Query: 808 VMME 811
V+++
Sbjct: 792 VVLD 795
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1933 (685.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 374/754 (49%), Positives = 512/754 (67%)
Query: 49 KSGREEDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLES 108
+ G +E E L+WA I+RLPT+ R+R +++ E G + VDV++LG ++ ++E
Sbjct: 15 EDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGKKVVDVTKLGAMERHLMIEK 74
Query: 109 ILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDA-YVGTRALPTLLNTSLN 167
++K +E DN K L ++R R +RVG+E P IEVR+E+L +E V +ALPTL N SL
Sbjct: 75 LIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWN-SLK 133
Query: 168 AIEGVLGFLRL--FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225
+ L L+L + + ++IL DVSGI+ P R+TLLLGPPG GKTTLL+ALSG +
Sbjct: 134 HV--FLDLLKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLEN 191
Query: 226 SLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLA 285
+L+ G ++Y GH L E VPQ+T AYISQHDLH EMT RET+DFS RC GVG+R +++
Sbjct: 192 NLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMM 251
Query: 286 ELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345
E+S+REKD GI PDPEIDA+MKA ++ GLK SL TDY+LKILGLDICA+ +VGN M+RGI
Sbjct: 252 EVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGI 311
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQP 405
SGGQKKR+TT EM+VGP KALFMDEI+ GLDSST FQI++ ++Q+ HIT+ T+ +SLLQP
Sbjct: 312 SGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQP 371
Query: 406 APETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQ 465
APE+YDLFDDI+L++EG+IVY GPR+ VL FFE GF+CPERKG ADFLQEV S+KDQ Q
Sbjct: 372 APESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQ 431
Query: 466 YWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWEL 525
YW +N P+ +VSV + FK +G+K+ + L PYD SKTH L Y + WEL
Sbjct: 432 YWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWEL 491
Query: 526 FKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFS 585
F+ C +RE+LLMKRN FVY+FKTFQ+ + +II TV++RT+M +I G + LFF+
Sbjct: 492 FRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDI-DIIHGNSYMSCLFFA 550
Query: 586 LVNVMFNGMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWVLRIPLSLMESSIWILLTY 645
V ++ +G+ EL++T+ RL FYKQ+ VL+IPLS ES +W LTY
Sbjct: 551 TVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTY 610
Query: 646 YTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANXXXXXXXXXXXXXXXX 705
Y IG+ P RFFRQ + F+VH +S+FR IAA+ +T V A
Sbjct: 611 YVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGF 670
Query: 706 XXAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKAR 765
D+ W+ WG++V+P+SY + + +NEFL RW P T+G+ +L++R
Sbjct: 671 AIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNV-----TLGRTILESR 725
Query: 766 GMYTEDHMFWICIVALLGFSLFFNLCFIAALTYL 799
G+ +D+M+W+ + ALLG ++ FN F AL++L
Sbjct: 726 GLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFL 759
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1911 (677.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 378/805 (46%), Positives = 530/805 (65%)
Query: 42 NPGDVFAKSGREEDEEELKWAAIERLPTYDRVRKTML----KHVLENGRIGYEEVDVSEL 97
N GDV + E L+WA IERLPT R+R T+L + + E GR VDV++L
Sbjct: 46 NDGDV----NDHDAEYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGR---RVVDVTKL 98
Query: 98 GMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDA-YVGTR 156
G ++ ++E ++K +E DN K L ++R R DRVG+E+P IEVR+E+L + + V +
Sbjct: 99 GAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGK 158
Query: 157 ALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLL 216
ALPTL NT+ + ++ L + + K+ I++DV+GI+KP R+TLLLGPP GKTTLL
Sbjct: 159 ALPTLWNTAKRVLSELVK-LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLL 217
Query: 217 QALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 276
+ALSG + +L+ SG ++Y GH L EFVPQ+T AYISQ+DLH EMTVRET+DFS RC G
Sbjct: 218 KALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQG 277
Query: 277 VGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIM 336
VG+R +++ E+S+REK+ GI PD E+DA+MKA ++ GL+ SL TDY+LKILGLDICA+I+
Sbjct: 278 VGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEIL 337
Query: 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDV 396
+G+ MRRGISGGQKKR+TT EM+VGP KALFMDEI+ GLDSST FQIV+ ++Q HI+
Sbjct: 338 IGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSA 397
Query: 397 TMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQE 456
T+++SLLQPAPE+YDLFDDI+L+++G IVY GPR VL+FFE GFRCPERKG ADFLQE
Sbjct: 398 TVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQE 457
Query: 457 VTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKK 516
V S+KDQ QYW ++ PY +VSV + FK +G+K+ D L PYD+SK+H L
Sbjct: 458 VISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFS 517
Query: 517 RYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGG 576
Y + NWELF C +RE+LLMKRN FVY+FKT Q+ + + I TV++RT+M +I G
Sbjct: 518 VYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGI-DIIHGN 576
Query: 577 KFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDXXXXXXXXXXXXIWVLRIPLSLME 636
+ ALFF+L+ ++ +G EL++T RL FYKQ+ VL++PLS E
Sbjct: 577 SYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFE 636
Query: 637 SSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANXXXXXXX 696
S +W L+YY IG+ P A+RFF+Q + F+VH +S+FR +AA+ +T V +
Sbjct: 637 SLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGI 696
Query: 697 XXXXXXXXXXXAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPT 756
+ W+ WG++ +P+SYG+ + +NEFL RW+ P F T
Sbjct: 697 LFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNF-----T 751
Query: 757 VGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYL-DPFKETKSVMMEHNDG 815
+G+ +L+ RGM +M+W+ + ALLGF++ FN+ F ALT+L P + +
Sbjct: 752 LGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSE 811
Query: 816 GKSKKQSNSHAQQNMRAADMSPPST 840
+ ++S + + D SP T
Sbjct: 812 LQGTEKSTEDSSVRKKTTD-SPVKT 835
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7PC84 | AB39G_ARATH | No assigned EC number | 0.6989 | 0.9714 | 0.9834 | yes | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.7156 | 0.9775 | 0.9849 | N/A | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6068 | 0.9653 | 0.9861 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6156 | 0.9599 | 0.9853 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6058 | 0.9585 | 0.9825 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6018 | 0.9646 | 0.9746 | N/A | no |
| Q8GU86 | PDR5_ORYSJ | No assigned EC number | 0.5986 | 0.9646 | 0.9766 | yes | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.6019 | 0.9673 | 0.9820 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6120 | 0.9714 | 0.9903 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5103 | 0.9551 | 0.9716 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1472 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-98 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-86 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-75 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-69 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 5e-54 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-54 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-47 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-42 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-39 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 9e-39 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-26 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-22 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-21 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-21 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-20 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-20 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-19 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-17 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-17 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-16 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-16 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-16 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-15 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-15 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-14 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-14 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-13 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-13 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-13 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-12 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-12 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-12 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-12 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-11 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-11 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-11 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-11 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-11 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-10 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-10 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-10 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-10 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-10 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-10 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-10 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-09 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-09 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-09 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-09 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-09 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-09 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-09 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 2e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-08 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-07 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-07 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-07 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-07 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 8e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-06 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-06 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-06 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 4e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-06 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-06 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-06 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-06 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-06 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 9e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 9e-06 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-05 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-05 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-05 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 7e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-04 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-04 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-04 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-04 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-04 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-04 | |
| COG1419 | 407 | COG1419, FlhF, Flagellar GTP-binding protein [Cell | 5e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-04 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-04 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 7e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 9e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.001 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 0.001 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.001 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.001 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.001 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 0.002 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 0.002 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.002 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 0.002 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.002 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 0.002 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 0.002 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 0.002 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.002 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 0.002 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.002 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.003 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 0.003 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.003 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.003 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 0.003 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.003 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.004 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 0.004 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 0.004 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.004 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.004 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.004 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2101 bits (5445), Expect = 0.0
Identities = 893/1487 (60%), Positives = 1113/1487 (74%), Gaps = 47/1487 (3%)
Query: 16 SMSRKGSFSSASKKGWASASLREAWNNPGDVFAKSGR--------EEDEEELKWAAIERL 67
+ SR GS + S S+ + N DVF+ + +EDEE LKWAAIE+L
Sbjct: 1 ARSRGGSMRRSI-----SRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKL 55
Query: 68 PTYDRVRKTMLKHVLENGRIG----YEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLR 123
PTY R+R +++K +EN G ++EVDV++L D++ ++ + KV EEDNEKFL +
Sbjct: 56 PTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKK 115
Query: 124 LRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKK 183
R R DRVGI++P +EVRFE+L++E D Y+G+RALPTL N + N E LG L + +KK
Sbjct: 116 FRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKK 175
Query: 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF 243
KL IL D SGI+KPSRMTLLLGPP SGKTTLL AL+GK D SL+VSG +TY G+ L EF
Sbjct: 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF 235
Query: 244 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
VP++T AYISQ+D+H G MTV+ETLDFS RC GVGTR++LL+EL+RREKDAGI P+ E+D
Sbjct: 236 VPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVD 295
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
FMKATAM G+K+SL TDY LKILGLDIC D +VG+EM RGISGGQKKRVTTGEM+VGP
Sbjct: 296 LFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPT 355
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
K LFMDEISTGLDSSTT+QIV+ ++Q+VH+T+ T+++SLLQPAPET+DLFDDIILLSEG+
Sbjct: 356 KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415
Query: 424 IVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFV 483
IVYQGPR+++L+FFES GF+CPERKG ADFLQEVTS+KDQ+QYW +N+PYRY+SV EF
Sbjct: 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFA 475
Query: 484 EHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFV 543
E FK+FHVG +L +EL VP+DKS++H A LV +Y + EL K C+ +EWLLMKRN+FV
Sbjct: 476 ERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFV 535
Query: 544 YVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVR 603
YVFKT QI I++ IA TV+LRT+M DG + GAL FS++ MFNG AELAL I R
Sbjct: 536 YVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQR 595
Query: 604 LPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLA 663
LP FYKQRD LF P W F LP ++L IP+S++ES +W+++TYY+IGFAP A+RFF+QLL
Sbjct: 596 LPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLL 655
Query: 664 FFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVS 723
F + QM +FR IA+V RT ++ANT G LLLVF+LGGFI+ K +I W W Y+VS
Sbjct: 656 VFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVS 715
Query: 724 PMSYGQNAIVLNEFLDERW----SAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIV 779
P+SYG NA+ +NE RW ++ N R +G A+L ++T+ + +WI +
Sbjct: 716 PLSYGFNALAVNEMFAPRWMNKMASDNSTR-------LGTAVLNIFDVFTDKNWYWIGVG 768
Query: 780 ALLGFSLFFNLCFIAALTYLDPFKETKSVM-----MEHNDGGKSKKQSNSHAQQN-MRAA 833
ALLGF++ FN+ F ALTYL+P + ++++ E S +S S A N R
Sbjct: 769 ALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREV 828
Query: 834 DMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEM 893
+ S EG+ ++ + + + ++GMVLPF PL+++FD VNYFVDMPAEM
Sbjct: 829 AIQRMSNP---EGLSKNRDSSLEAA--NGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEM 883
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG 953
K QG+ E+RLQLL++V+GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISG
Sbjct: 884 KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943
Query: 954 YPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVE 1006
+PKKQETFARISGYCEQNDIHSP VT+ ESL+YSA+LRLPK+ MFV+EVMELVE
Sbjct: 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003
Query: 1007 MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
+ L++++VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR
Sbjct: 1004 LDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063
Query: 1067 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVP 1126
NTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG VIY+GPLGR SHK++EYFEA+PGVP
Sbjct: 1064 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVP 1123
Query: 1127 KIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYF 1186
KI++ YNPATW+LEVSS A E +L +DFA Y S LY+RN+ L+KELS+P PG+ DLYF
Sbjct: 1124 KIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYF 1183
Query: 1187 TTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQD 1246
T+YSQ Q K+C WKQ W+YWR+P YN +RFF T + G IFW G K S D
Sbjct: 1184 ATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNAND 1243
Query: 1247 LINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYV 1306
L ++GAMY+AVLF+G +N S+V +VA+ERTVFYRERAAGMYS+L YA AQV E YV
Sbjct: 1244 LTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYV 1303
Query: 1307 SIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMS 1366
IQT Y+L++Y+M+ F W KF WFYF F+YFT YGMM V+LTPNQQ+A I +
Sbjct: 1304 LIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAA 1363
Query: 1367 FFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAG-ESGI 1425
F +NLFSGF +PR +IP WW WYYW PVAWT+YGL+ SQ GD ++V G
Sbjct: 1364 AFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDP 1423
Query: 1426 TVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLNFQRR 1472
T+K Y+ HYGYD DF+G VAA +GF V F F+F + I+ LNFQ R
Sbjct: 1424 TIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1166 bits (3018), Expect = 0.0
Identities = 414/1461 (28%), Positives = 662/1461 (45%), Gaps = 175/1461 (11%)
Query: 114 EEDNEKFLLRLRERTDRVGIEIP--KIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEG 171
E + + ++ R+ D I K+ V ++NLS G A + PT N L +
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILT- 59
Query: 172 VLGFLRLFPSKK-RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR-V 229
GF +L + + +IL + G++KP +T++LG PGSG +TLL+ ++ +D V
Sbjct: 60 -RGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGV 118
Query: 230 SGRVTYCGHELTEFVPQRT--CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAEL 287
G +TY G E Y ++ D+H +TV ETLDF+ RC R + ++
Sbjct: 119 EGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE 178
Query: 288 SRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347
+ D + GL + VGN+ RG+SG
Sbjct: 179 EYAKHI--------------------------ADVYMATYGLSHTRNTKVGNDFVRGVSG 212
Query: 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407
G++KRV+ E +G AK D + GLDS+T + +R ++ +I D T ++++ Q +
Sbjct: 213 GERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQ 272
Query: 408 ETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYW 467
+ Y+LFD +I+L EG +Y GP + +FE +GF+CP+R+ ADFL +TS ++Q
Sbjct: 273 DAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIK 331
Query: 468 CKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDK---SKTHPA------------G 512
E + EF +++ +L E+ D+ S T A
Sbjct: 332 -PGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRT 390
Query: 513 LVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQL 572
Y +S K C AR +L MK N +F F IM++I +V+
Sbjct: 391 RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN---- 446
Query: 573 IDGGKFYG-ALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIP 631
G ALFF+++ F+ + E+A P K R + + A A+ + IP
Sbjct: 447 TSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIP 506
Query: 632 LSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTL 691
++ES ++ ++ Y+ + F +A RFF LL F LFR I AV++T A T
Sbjct: 507 FKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTP 566
Query: 692 GTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERW--------- 742
LL + + GF + + + W W YYV+P++Y ++++NEF R+
Sbjct: 567 AAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626
Query: 743 ----SAPNPAR---FLVDEP----TVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLC 791
+ + + EP G LK Y H W ++GF++FF
Sbjct: 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFV 685
Query: 792 FIAALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAV 851
+I + K+ ++ ++ + + + A + S D+
Sbjct: 686 YILLTEFNKGAKQKGEIL--------VFRRGS---LKRAKKAGETSASNK-----NDIE- 728
Query: 852 MNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKS-----------QGIEE 900
G VL L+ D VN DM E I++
Sbjct: 729 ---------------AGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKK 773
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQET 960
+ +L +V G +PG LTAL+G SGAGKTTL++VLA R T G I G + +
Sbjct: 774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS 833
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLP-------KDMFVEEVMELVEMKALRNS 1013
F R GY +Q D+H P T+ ESL +SA+LR P K +VEEV++L+EM++ ++
Sbjct: 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADA 893
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1072
+VG+PG +GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G
Sbjct: 894 VVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHG 952
Query: 1073 RTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGY 1132
+ ++CTIHQPS +FE FD L L+++GG +Y G LG SH ++ YFE G PK +
Sbjct: 953 QAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDA 1011
Query: 1133 NPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTT---K 1189
NPA W+LEV A N D+ ++ +S Y+ + + L + ++D K
Sbjct: 1012 NPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSK 1071
Query: 1190 YSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLIN 1249
Y+ Q K W+ YWR P Y +FFLT G F+ G Q L N
Sbjct: 1072 YAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QGLQN 1128
Query: 1250 LLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQ 1309
+ A++ A + + VA RER + +S L + AQ+++E Y +
Sbjct: 1129 QMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVA 1188
Query: 1310 TIVYSLLLYSMIGFHWEVTK-------FLWFYFFMLMCFMYFTLYGMMLVALTPNQQIAT 1362
++ + Y +GF+W +K + F+ M F+YF+ G M+++ PN A
Sbjct: 1189 GTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248
Query: 1363 ILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGD-----KVSE- 1416
+L S + F G + P +++P +W + Y SP + + L+++ + D KV E
Sbjct: 1249 VLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKEL 1308
Query: 1417 VEVAGESGITVKEYL---------------------YKHYGYDYDFLGAVAAAHIG---- 1451
+ SG T EY+ + Y Y DFL +++ + G
Sbjct: 1309 LTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRN 1368
Query: 1452 FVVLFFFVFVYGIKFLNFQRR 1472
F + F+F I + F
Sbjct: 1369 FGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = 1e-98
Identities = 109/232 (46%), Positives = 141/232 (60%), Gaps = 40/232 (17%)
Query: 875 PLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMD 934
L + ++NY V + + QLL ++SG +PG LTAL+G SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKGG---------KRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 935 VLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994
VLAGRKT G I G I I+G P + F R +GY EQ D+HSPN+T+ E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 995 DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
GLS EQRKRLTI VEL A PSI+F+DEPTSGLD
Sbjct: 108 ---------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140
Query: 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG +Y G
Sbjct: 141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 2e-86
Identities = 174/593 (29%), Positives = 285/593 (48%), Gaps = 36/593 (6%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY-IEGSISISGYPKK 957
E R LL++VSG +PG L A++G SGAGKTTLM+ LA R G GS+ ++G P
Sbjct: 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMF-------VEEVMELVEMKAL 1010
+ IS Y +Q+D+ P +T+ E L++ A LR+P+ + V+EV++ + ++
Sbjct: 94 AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC 153
Query: 1011 RNSLVGLPG-VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
N+ +G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIR 1129
G+T++CTIHQPS ++FE FD++ LM G V Y G + V +F + G P
Sbjct: 214 QKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGS----PDQAVPFFSDL-GHP-CP 266
Query: 1130 DGYNPATWVLEVSSNA--VETQLNVDFAAI---YADSDLYRRNQQLIKELSSPAPG---S 1181
+ YNPA + ++V + E + I +A SD+ R S A G
Sbjct: 267 ENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKD 326
Query: 1182 KDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKT 1241
+ Y+ + TQ + S R+P +R T + L G+I+ +G
Sbjct: 327 SENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ 386
Query: 1242 SKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSI 1301
Q N+ GA++ + + N V +V E VF RE +G+Y Y A+
Sbjct: 387 KGVQ---NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA 443
Query: 1302 EAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIA 1361
E I +++ + Y MIG T FL F F + + T +G ++ + +A
Sbjct: 444 ELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMA 503
Query: 1362 TILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGD----KVSEV 1417
+ F+ + LF GF + IP++++W + S + GL+ +Q D + +
Sbjct: 504 LTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSA 563
Query: 1418 EVAGE---SG-ITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKF 1466
G SG + ++ +++ D +G V F +L +F I+
Sbjct: 564 NTTGPCPSSGEVILETLSFRNADLYLDLIGLVILI-FFFRLLAYFALRIRIRR 615
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 5e-75
Identities = 96/232 (41%), Positives = 143/232 (61%), Gaps = 38/232 (16%)
Query: 875 PLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMD 934
++L+F ++ V ++ QLL++VSG +PG LTA++G SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 935 VLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994
LAGR+TG + G + I+G P + +F +I GY Q+DI P +T+ E+L+++A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 995 DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
GLS +RKR++IA+ELV+NPS++F+DEPTSGLD
Sbjct: 111 ---------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ +G VIY G
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGR-VIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 244 bits (626), Expect = 4e-69
Identities = 156/631 (24%), Positives = 274/631 (43%), Gaps = 49/631 (7%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
F ++ + +L +VSG+ KP + ++G G+GKTTL+ AL+ +S K ++ SG V G
Sbjct: 31 FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90
Query: 239 ELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
+ + AY+ Q DL +TVRE L F + ++++EK +
Sbjct: 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQ-------AHLRMPRRVTKKEKRERV-- 141
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR-RGISGGQKKRVTTGE 357
D VL+ LGL CA+ +G R +G+SGG++KR+
Sbjct: 142 ----------------------DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFAS 179
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
L+ LF DE ++GLDS + +V+ ++ + T+I ++ QP+ E ++LFD II
Sbjct: 180 ELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKII 238
Query: 418 LLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYV 477
L++EG + Y G + + FF +G CPE ADF +V + +NE +
Sbjct: 239 LMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPG-----SENESRERI 293
Query: 478 SVPEFVEHFKTFHVGQKLTDELRVPYDKSK---THPAGLVKKRYGISNWELFKTCFAREW 534
+ + F +G+ + + K+ + Y S W F R W
Sbjct: 294 E--KICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSW 351
Query: 535 LLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGM 594
L + R+ + + Q + +I+ +YL +T + + GALF L N+ F +
Sbjct: 352 LSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLFLTNMTFQNV 408
Query: 595 AELALTI-VRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPS 653
+ LP F ++ + A+ L + +PL ++ +++ +TY+ IG
Sbjct: 409 FPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSG 468
Query: 654 ATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIK 713
AT F L V + S I+ + +A T+G ++ + GGF + D I
Sbjct: 469 ATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIP 528
Query: 714 PWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHM 773
+ W Y+S YG +++N++ D A P+ G+ +L+ D
Sbjct: 529 VYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD-- 586
Query: 774 FWICIVALLGFSLFFNLCFIAALTYLDPFKE 804
++ ++ L+ FF L AL K
Sbjct: 587 LYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 5e-54
Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 7/216 (3%)
Query: 1196 TQCKTCFWKQHWSYWRNPKYNAI-RFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAM 1254
TQ K ++ WR+P + R ++ +FG +F +N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFG----NLDTSLGGLNRPGLL 56
Query: 1255 YSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYS 1314
+ ++LF S+ + ++ V ER V RE A+ +YS Y A++ +E +Q I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1315 LLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNL 1374
L++Y M+G ++F F +L+ + + G+ + AL P+ + A+ + L L
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1375 FSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQI 1410
SGF +P +P W +W Y+ +P+ + I L ++
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 6e-54
Identities = 81/225 (36%), Positives = 132/225 (58%), Gaps = 8/225 (3%)
Query: 886 FVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI 945
+ D+ + K+ ++L DVS G + A++G SG+GKTTL+D ++GR GG
Sbjct: 6 WWDVGLKAKNWN---KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62
Query: 946 -EGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP---KDMFVEEV 1001
G I +G P+K + F + Y Q+DI P +T+ E+L Y+A LRLP D ++
Sbjct: 63 TSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKR 122
Query: 1002 MELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
+E V ++ L + +G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A +
Sbjct: 123 VEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182
Query: 1062 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
+ T+ R V+ TIHQP D+F FD + L+ G ++Y+G
Sbjct: 183 VSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGE-IVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 3e-47
Identities = 161/621 (25%), Positives = 297/621 (47%), Gaps = 74/621 (11%)
Query: 842 PLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQ---PLSLAFDHVNYFVDMPAEMKSQGI 898
P+F+G++ + PD S + +R L P++L F V Y V MK++G
Sbjct: 2 PVFDGVE-NQNDGPDRSKPPSQDSRDLPSLLLSSCYPITLKFMDVCYRVKF-ENMKNKGS 59
Query: 899 EENRL-----------------QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 941
R+ +L V+G PG + A++G SG+GK+TL++ LAGR
Sbjct: 60 NIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ 119
Query: 942 GGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEV 1001
G G+I + ++ R G+ Q+DI P++T+ E+L++ + LRLPK + +E
Sbjct: 120 GNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEK 178
Query: 1002 MELVE-------MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+ + E + N+++G + G+S +RKR++IA E++ NPS++ +DEPTSGLD
Sbjct: 179 ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
Query: 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHK 1114
A AA ++ T+ + G+T+V ++HQPS +++ FD + ++ G ++ G +
Sbjct: 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFG----KGSD 293
Query: 1115 LVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVET-------QLNVDFAAIYADSDLY--- 1164
+ YFE+V P NPA ++L++++ +T + NV + + + + L
Sbjct: 294 AMAYFESVGFSPSF--PMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPK 351
Query: 1165 -----------RRNQQLIKELSSPAPGSKD-LYFTTKYSQDFITQCKTCFWKQHWSYWRN 1212
+ N + + S+ S D + +T ++Q I ++ ++H S
Sbjct: 352 VKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHES---- 407
Query: 1213 PKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSV 1272
+N +R F L G+++W S +D+ + LG ++ +F G + + V
Sbjct: 408 --FNTLRVFQVIAAALLAGLMWWH-----SDFRDVQDRLGLLFFISIFWGVFPSFNSVFV 460
Query: 1273 VAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLW 1332
ER +F +ERA+GMY+ +Y A++ + I ++ + Y M G E+ FL
Sbjct: 461 FPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLL 520
Query: 1333 FYFFMLMCFMYFTLYGMML-VALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRW 1391
+L + G+ L A+ ++ +TI+ L+F L GF V ++P W
Sbjct: 521 TLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFV-LTGGFYV--HKLPSCMAW 577
Query: 1392 YYWASPVAWTIYGLVTSQIGD 1412
+ S ++ L+ Q G+
Sbjct: 578 IKYISTTFYSYRLLINVQYGE 598
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 6e-44
Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 36/250 (14%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+ + IL+DVS V+ ++ +LG GSGKTTLL A+SG+ + SG++ + G
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72
Query: 239 ELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
Q+ AY+ Q D+ +TVRETL ++ R+ I+
Sbjct: 73 PRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------RLPRKSSDAIR- 119
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM 358
++ + L A +G + +GISGG+++RV+
Sbjct: 120 ----------------------KKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157
Query: 359 LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418
L+ K L +DE ++GLDS T +V + Q+ + +I+++ QP + + LFD I+L
Sbjct: 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILL 216
Query: 419 LSEGEIVYQG 428
LS GEIVY G
Sbjct: 217 LSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-42
Identities = 66/265 (24%), Positives = 108/265 (40%), Gaps = 19/265 (7%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP--KKQETF 961
L VS PG + L+G +GAGKTTL+ +LAG G I + GY K+
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKV 76
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMF----VEEVMELVEMKALRNSLVGL 1017
R GY Q P +T+ E+L + A L +EE++EL ++ N V
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVR- 135
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R G +
Sbjct: 136 ----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTIL 191
Query: 1078 TIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATW 1137
+ E D + ++ G +I G +L E F + ++
Sbjct: 192 LSTHILEEAEELCDRVIILND-GKIIAEGTP----EELKEKFGGKGVI-ELEPERLELAE 245
Query: 1138 VLEVSSNAVETQLNVDFAAIYADSD 1162
+LE + + +
Sbjct: 246 LLEGLKLVKGEEELAEILEALLEEG 270
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 55/216 (25%), Positives = 105/216 (48%), Gaps = 8/216 (3%)
Query: 524 ELFKTCFAREWLLMKRNSFV-YVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGAL 582
K RE+L R+ + +++ Q +M+++ TV+ + + G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS----LGGLNRPGLL 56
Query: 583 FFSLVNVMFNGMAELALT-IVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWI 641
FFS++ F+ + ++ I ++ + A+ L ++ +P+SL+++ I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 642 LLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFV 701
L+ Y+ +G S RFF LL L FIAA++ + A+ +G LL + +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 702 LGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEF 737
L GF + D + W+ W YY++P++Y A+ NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 7e-40
Identities = 150/558 (26%), Positives = 255/558 (45%), Gaps = 72/558 (12%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL+ V+G+ P + +LGP GSGK+TLL AL+G+ + +G + + T+ + +R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKR 141
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
T +++Q D+ + +TVRETL F + L L+++EK
Sbjct: 142 T-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEK--------------- 178
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG-EMLVGPAKAL 366
L + V+ LGL C + ++GN RGISGG++KRV+ EML+ P+ L
Sbjct: 179 ---------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LL 228
Query: 367 FMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426
+DE ++GLD++ +++V + + T++ S+ QP+ Y +FD +++LSEG ++
Sbjct: 229 ILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287
Query: 427 QGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEP---------YRYV 477
G + +FESVGF ADFL ++ + Q ++ +P Y +
Sbjct: 288 FGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347
Query: 478 SVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNW-ELFKTCFAREWLL 536
P+ + H Q + V +K H + R IS W F R
Sbjct: 348 LAPKVKAAIEMSHFPQ--ANARFVGSASTKEHRSSD---RISISTWFNQFSILLQRSLKE 402
Query: 537 MKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALF---FSLVNVMFNG 593
K SF + FQ+ +++A ++ + Q G F+ ++F F N +F
Sbjct: 403 RKHESF-NTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVF 461
Query: 594 MAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPS 653
E A+ F K+R + ++ + V +P+ L+ +I++ +TY+ G P
Sbjct: 462 PQERAI-------FVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPE 514
Query: 654 ATRFFRQ---LLAFFSVHQ-MGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAK 709
F LL + V Q +GL+L I + A+T+ T T+L + GGF V K
Sbjct: 515 LGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKK----ASTIVTVTMLAFVLTGGFYVHK 570
Query: 710 DDIKPWMIWGYYVSPMSY 727
+ M W Y+S Y
Sbjct: 571 --LPSCMAWIKYISTTFY 586
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 5e-39
Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 51/293 (17%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240
L VS V+P + LLGP G+GKTTLL+ L+G + SG + G+++
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 241 TEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
+ + R Y+ Q + E+TVRE L+F R G LS+ E + I
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG----------LSKEEAEERI-- 117
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM 358
+ +L++ GL+ A+ V R +SGG K+R++
Sbjct: 118 ----------------------EELLELFGLEDKANKKV-----RTLSGGMKQRLSIALA 150
Query: 359 LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIIS--LLQPAPETYDLFDDI 416
L+ + L +DE ++GLD + +I +R++ VT+++S +L+ E +L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 417 ILLSEGEIVYQGPREYVLDFFESVGFRC--PERKGAADFLQEVTSRKDQQQYW 467
I+L++G+I+ +G E + + F G PER A+ L+ + K +++
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 9e-39
Identities = 42/91 (46%), Positives = 57/91 (62%)
Query: 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT 397
GNE RGISGG++KRV+ E LV A L D + GLDSST +I++ +R M + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 398 MIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
+SL Q + E YDLFD +++L EG +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 3e-34
Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPK 956
+++ +L+D SG +PG + ++G G+G +TL+ LA R T G +EG I +G P
Sbjct: 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPY 74
Query: 957 KQ--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSL 1014
K+ E + Y + D+H P +T+ E+L ++ LR + FV
Sbjct: 75 KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA--LRCKGNEFVR--------------- 117
Query: 1015 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1073
G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R D
Sbjct: 118 -------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
T +++Q S +I++ FD++ ++ G IY G
Sbjct: 171 TTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 177 RLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236
+ K+ IL D SG+VKP M L+LG PGSG +TLL+AL+ +++ ++ V G + Y
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70
Query: 237 GHELTEF--VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 276
G EF Y+S+ D+H +TVRETLDF+ RC G
Sbjct: 71 GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-31
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 21/203 (10%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFA- 962
+ D+S G + L+G +GAGKTT + +L G R T G + I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAA 73
Query: 963 -RISGYCEQNDIHSPNVTIYESLLYSAWLR-LPK---DMFVEEVMELVEMKALRNSLVGL 1017
+ GYC Q D +T+ E L + A L+ LPK VE ++ ++ + N
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR- 132
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+++
Sbjct: 133 ----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIIL 187
Query: 1078 TIHQPSIDIFEAF-DELFLMKRG 1099
T H S+D EA D + +M G
Sbjct: 188 TTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 26/213 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+DVS +PG A+VG +GAGK+TL+ + G + T GSI + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 964 ISGYCEQNDIHSPN--VTIYESLL------YSAWLRLPKDMF--VEEVMELVEMKALRNS 1013
I GY Q + +++ + +L + RL K V+E +E V + L +
Sbjct: 70 I-GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR 128
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G
Sbjct: 129 QIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
T++ H + + E FD + L+ R V+ +G
Sbjct: 184 TILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 17/212 (8%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP--KKQ 958
+ + L VS PG+ L+G +GAGKTTLM +LA G+I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLKQP 67
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAWL-RLPK---DMFVEEVMELVEMKALRNSL 1014
+ R GY Q PN T+ E L Y AWL +P V+EV+ELV +
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKK 127
Query: 1015 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1074
+G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + + R
Sbjct: 128 IG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGEDRI 181
Query: 1075 VVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
V+ + H D+ +++ ++ G +++ G
Sbjct: 182 VILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-28
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 20/214 (9%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
+L+D+S + G +TAL+G +GAGK+TL+ + G G I I G P ++
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRL 75
Query: 964 ISGYCEQNDIHSPN--VTIYE---SLLYSA--WLRLPKDMF---VEEVMELVEMKALRNS 1013
GY Q + +T+ + Y W R V+E +E V M+ LR+
Sbjct: 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR 135
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
+G LS Q++R+ +A L NP ++ +DEP +G+D + ++ G+
Sbjct: 136 QIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
TV+ H + + FD + + R H+I +GP
Sbjct: 191 TVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 5e-28
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 52/196 (26%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
L +VS + G + ALVG +G+GK+TL+ +AG G I I G +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAK----- 65
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGL 1023
+ ++ LR + +P L
Sbjct: 66 -----------------------------------------LPLEELRRRIGYVPQ---L 81
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083
S QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+ H P
Sbjct: 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141
Query: 1084 IDIFEAFDELFLMKRG 1099
A D + ++K G
Sbjct: 142 -LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 28/210 (13%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQET--- 960
L D+S + G +VG +G+GK+TL+ +L G G G + + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 961 FARISGYCEQNDIHSP-----NVTIYESLLYSAWLR---LPKD---MFVEEVMELVEMKA 1009
R G QN P T+ E + + L LP++ VEE +ELV ++
Sbjct: 73 LRRKVGLVFQN----PDDQFFGPTVEEEVAFG--LENLGLPEEEIEERVEEALELVGLEG 126
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
LR+ LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
G+T++ H + E D + +++ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 180 PSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239
K ++L +VSG KP +T ++GP G+GK+TLL AL+G+ L VSG V G
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRP 74
Query: 240 LTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 277
L + ++ Y+ Q D+ H +TVRETL F+ + G+
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETF 961
+L D+S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE--L 74
Query: 962 ARISGYCEQNDIHSPNVTIYESLL-----YSAWLRLP--KDM-FVEEVMELVEMKALRNS 1013
A+ Y Q+ +T+YE +L + P +D VEE +EL+ ++ L +
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1072
VD LS +R+R+ IA L I+ +DEPTS LD V+ +R+ + G
Sbjct: 135 -----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG 189
Query: 1073 RTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
TVV +H D+ A D L L+K G V P
Sbjct: 190 LTVVMVLH----DLNLAARYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 100 bits (253), Expect = 3e-24
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 43/207 (20%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQET 960
+L D+S + G + ++G +GAGK+TL+ LAG + + G I ++ K+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE-- 70
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
AR Y Q +EL+ + L +
Sbjct: 71 LARKIAYVPQ------------------------------ALELLGLAHLADR-----PF 95
Query: 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTI 1079
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R G+TVV +
Sbjct: 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL 155
Query: 1080 HQPSIDIFEAFDELFLMKRGGHVIYAG 1106
H ++ D + L+K G ++ G
Sbjct: 156 HDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 3e-23
Identities = 66/220 (30%), Positives = 105/220 (47%), Gaps = 25/220 (11%)
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSI 949
K+ G ++Q L+ VS + G A+VG SG+GK+TL+++L G R T G ++G
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG-T 66
Query: 950 SISGYPKKQETFAR---ISGYCEQNDIHS--PNVTIYE----SLLYSAWLRLPKDMFVEE 1000
IS +K+ R I G+ Q+ + P++T E LL + + + EE
Sbjct: 67 DISKLSEKELAAFRRRHI-GFVFQS--FNLLPDLTALENVELPLLLAGVPKKERRERAEE 123
Query: 1001 VMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060
++E V + N LS Q++R+ IA L +P II DEPT LD+
Sbjct: 124 LLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178
Query: 1061 VMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
VM +R + G T+V H P ++ E D + ++ G
Sbjct: 179 VMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 4e-23
Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 46/198 (23%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYP--KKQETF 961
L D+S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD 1021
R GY + N+T+ E+L S M
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS------GGM------------------------- 100
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
++RL +A L+ +P ++ +DEPTSGLD + +R G+T++ + H
Sbjct: 101 ------KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154
Query: 1082 PSIDIFEAFDELFLMKRG 1099
+ D + ++ G
Sbjct: 155 LE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 37/86 (43%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL 402
RG+SGG++KRV+ LV LF+DE ++GLDSS+ Q++ +R++ T T+I S+
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSI 168
Query: 403 LQPAPETYDLFDDIILLSEGEIVYQG 428
QP+ E ++LFD ++LLS+G ++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 19/218 (8%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYP 955
R L+DVS G L+G +G+GK+TL+ +L G + T G ++G + S
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 956 KKQETFARISGYCEQN-DIHSPNVTIYESLLYSA-WLRLPKDM---FVEEVMELVEMKAL 1010
+ + G QN D T+ + + + L LP++ V E +ELV ++ L
Sbjct: 74 LLE--LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL 131
Query: 1011 RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1069
+ LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 132 LDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE 186
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ G+T++ H + E D + ++ G ++ G
Sbjct: 187 EGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 54/207 (26%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYP-----K 956
+L DVS G + AL+G SG+GK+TL+ +AG GSI I G
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD----SGSILIDGEDLTDLED 69
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVG 1016
+ R G Q+ P++T+ E++
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------ 99
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 1075
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G TV
Sbjct: 100 -----GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154
Query: 1076 VCTIHQPSIDIFEAF---DELFLMKRG 1099
V H D+ EA D + +++ G
Sbjct: 155 VLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 4e-21
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 32/223 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY------PKKQE 959
L+DVS + PG AL+G SGAGK+TL+ L G GS+ I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 960 TFARISGYCEQNDIHSPNVTIYESLL---------YSAWLRLPKDMFVEEVMELVEMKAL 1010
R G Q +++ E++L + + L + + +E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALE---- 130
Query: 1011 RNSLVGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
VGL D LS Q++R+ IA L+ P +I DEP + LD ++ VM +
Sbjct: 131 ---RVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187
Query: 1066 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ + G TV+ ++HQ D+ + + + + G +++ GP
Sbjct: 188 KRINREEGITVIVSLHQV--DLAREYADRIVGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 9e-21
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE---GSISISGYPKKQ 958
Q L++++ PG A++G SGAGK+TL+ + + G I I+ K +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLL-----YSAWLRLPKDMFVEEVMELVEMKALRNS 1013
+ RI G Q+ +T+ E++L Y R F EE E + AL
Sbjct: 76 KLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERA-LSALE-- 131
Query: 1014 LVGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1067
VGL D LS Q++R+ IA L P +I DEP + LD + + VM ++
Sbjct: 132 RVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRI 191
Query: 1068 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ G TV+ +HQ +D+ + + + + + G +++ G
Sbjct: 192 NKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 180 PSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239
P K K ++L+++SG VKP +T L+G G+GKTTLL L+G+ + ++G + G
Sbjct: 14 PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRP 72
Query: 240 LTEFVPQRTCAYISQHDLHHGEMTVRETLDFSG--RCLGVGTR 280
L + QR+ Y+ Q D+H +TVRE L FS R L V R
Sbjct: 73 LDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 19/221 (8%)
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISI 951
K + +Q + VS +PG +T L+G +GAGKTT + +LAG G+ +
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----V 64
Query: 952 SGYPKKQETFA--RISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMF---VEEVMELV 1005
G+ +E R G+ + +T E+L Y A L L D +EE+ + +
Sbjct: 65 DGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL 124
Query: 1006 EMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
M+ L + VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +
Sbjct: 125 GMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179
Query: 1066 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
R G+ ++ + H ++ D + ++ R G V+Y G
Sbjct: 180 RQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETF 961
++L D+S + G + +G +GAGKTT M ++ G + G I Y K E
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEAL 71
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD 1021
RI E + PN+T E+L A L + ++EV+++V +K V
Sbjct: 72 RRIGALIEAPGFY-PNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK----- 125
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+ + H
Sbjct: 126 GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFA 962
+L D+S G + AL G +GAGKTTL +LAG +++ GSI ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIKAKERR 70
Query: 963 RISGYCEQN-DIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL--RNSLVGLPG 1019
+ GY Q+ D ++ E LL + E V++ +++ AL R+ L
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL----- 125
Query: 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
LS Q++RL IA L++ ++ DEPTSGLD + V +R G+ V+
Sbjct: 126 --SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVIT 183
Query: 1080 H 1080
H
Sbjct: 184 H 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 27/176 (15%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGYIEGSISISGYPKKQET 960
L+D+S G +TAL+G SG GK+TL+ +L G EG + + G
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 961 FARIS-----GYCEQNDIHSPNV---TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN 1012
+ G Q PN +IY+++ Y L K EE+ E VE +ALR
Sbjct: 74 VDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIKLK--EELDERVE-EALR- 125
Query: 1013 SLVGLPG-------VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 126 -KAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 6e-20
Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFV 244
+L D+S V+ +T L+GP G+GK+TLL+A+ G K SG + G + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRKRR 72
Query: 245 PQRTCAYISQH-DLHHG-EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
+ Y+ Q + +TV++ + LG + L++++K+ ++
Sbjct: 73 KRLRIGYVPQKSSVDRSFPITVKDVVL-----LGRYGKKGWFRRLNKKDKE-------KV 120
Query: 303 DAFMKATAMSGL-KTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
D ++ M L +G +SGGQK+RV L
Sbjct: 121 DEALERVGMEDLRDRQIGE------------------------LSGGQKQRVLLARALAQ 156
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL--LQPAPETYDLFDDIILL 419
L +DE TG+D + +I ++++ T+++ L FD +I L
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EGKTVLMVTHDLGLVM---AYFDRVICL 212
Query: 420 SEGEIVYQGPREYVL 434
++ GP E VL
Sbjct: 213 -NRHLIASGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 24/207 (11%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQE 959
+ L D+S PG AL+G SG GKTTL+ ++AG R G I+G ++G P ++
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGR-DVTGVPPER- 71
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL---PKDMFVEEVMELVEMKALRNSLVG 1016
R G Q+ P++T+ E++ + L+L PK V EL+E+ L L
Sbjct: 72 ---RNIGMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRARVRELLELVGLEGLLNR 126
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTV 1075
P LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G T
Sbjct: 127 YP--HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITT 184
Query: 1076 VCTIHQPSIDIFEAF---DELFLMKRG 1099
+ H D EA D + +M G
Sbjct: 185 IYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 6e-20
Identities = 60/217 (27%), Positives = 108/217 (49%), Gaps = 16/217 (7%)
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSI 949
K G+ +++ L+DV+ G A+VG SG+GK+TL+++L G + T G I G
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING-K 67
Query: 950 SISGYPKKQ--ETFARISGYCEQNDIHS--PNVTIYESLLYSAWLR-LPKDMFVEEVMEL 1004
++ +K+ + + G+ QN + P++T+ E++ + EL
Sbjct: 68 DLTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEEL 125
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+E+ L + L+ LS Q++R+ IA L+ NP II DEPT LD++ A V+
Sbjct: 126 LEVLGLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184
Query: 1065 VRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100
+R + G+T++ H P ++ + D + +K G
Sbjct: 185 LRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-19
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 24/215 (11%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK--- 956
+ L D++ + G LTALVG SGAGK+TL+++L G +G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVG 1016
E + + + QN + TI E++ L + +E + +A V
Sbjct: 389 SPEAWRKQISWVSQNP-YLFAGTIRENI------LLARPDASDEEIIAALDQAGLLEFVP 441
Query: 1017 LP-GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
P G+D GLS Q +RL +A L++ S++ +DEPT+ LDA I+++ ++
Sbjct: 442 KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501
Query: 1068 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102
+TV+ H+ D +A D + ++ G V
Sbjct: 502 LAK-QKTVLVITHRLE-DAADA-DRIVVLDNGRLV 533
|
Length = 559 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIE---GSISISGYP-KKQE 959
Q ++DVS G +T L+G +GAGKTTL+ ++A + G ++I G +
Sbjct: 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT-----LLIPDSGKVTIDGVDTVRDP 70
Query: 960 TFAR--ISGYCEQNDIHSPNVTIYESLLYSAWL----RLPKDMFVEEVMELVEMKALRNS 1013
+F R I + +++ +T E+L Y A L R + E+ + +++ +
Sbjct: 71 SFVRRKIGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR 129
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
VG ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR
Sbjct: 130 RVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGR 184
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
V+ + H + EA + ++ G V+ G
Sbjct: 185 AVIFSSH--IMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-19
Identities = 66/275 (24%), Positives = 113/275 (41%), Gaps = 66/275 (24%)
Query: 851 VMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVS 910
+++TP T + LP + F++V++ + +L+D+S
Sbjct: 449 ILDTPPEQEGDKT----LIHLPKLQGEIEFENVSF-----------RYGPDDPPVLEDLS 493
Query: 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKKQ---ETFARIS 965
PG A+VG SG+GK+TL+ +L G Y +G I + G + R
Sbjct: 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQV 549
Query: 966 GYCEQND------------IHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS 1013
GY Q+ + +P T EE++E ++
Sbjct: 550 GYVLQDPFLFSGSIRENIALGNPEATD------------------EEIIEAAQLAGAHEF 591
Query: 1014 LVGLP-GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+ LP G D LS QR+RL +A L++ P I+ +DE TS LD AI+++
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 1065 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+ + GRTV+ H+ S + D + ++ +G
Sbjct: 652 LL-QILQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 86.3 bits (215), Expect = 3e-19
Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 62/227 (27%)
Query: 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937
+ F +V++ +L+DVS +PG A+VG SG+GK+TL+ +L
Sbjct: 1 IEFKNVSF-----------SYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 938 G--RKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL 992
T G I I G + E+ + Y Q + L+S
Sbjct: 50 RLYDPT----SGEILIDGVDLRDLDLESLRKNIAYVPQ-----------DPFLFSG---- 90
Query: 993 PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052
+R ++ LS QR+R+ IA L+ +P I+ +DE TS
Sbjct: 91 ----------------TIRENI--------LSGGQRQRIAIARALLRDPPILILDEATSA 126
Query: 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
LD A+++ +R + G+TV+ H+ S D + ++ G
Sbjct: 127 LDPETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-19
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 17/191 (8%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKK 957
++L+ ++ A G + AL+G +GAGK+TL+ L G R G + Y +K
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 958 QETFARIS-GYCEQN---DIHSPNVTIYESLLYSAW-LRLPKDMF---VEEVMELVEMKA 1009
R G Q+ + + + + + + L L + V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG 119
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
LR LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 120 LRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 1070 DTGRTVVCTIH 1080
G TVV + H
Sbjct: 175 AEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 9e-19
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 17/214 (7%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQE 959
+L+ V R G + A++G SG+GK+TL+ ++ G R G I+G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPG 1019
R G Q+ ++T++E++ + LR + EE+ E+V K L VGL G
Sbjct: 74 RLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEK-LE--AVGLRG 128
Query: 1020 V-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1073
LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R+ G
Sbjct: 129 AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL 188
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
T + H F D + ++ G ++ G
Sbjct: 189 TSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-18
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 742 WSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDP 801
WS P T+G+A+LK+RG++TE + +WI + ALLGF++ FN+ F ALTYL+P
Sbjct: 1 WSKPFSG----SNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNP 56
Query: 802 FKETKSVM 809
++++++
Sbjct: 57 LGKSQAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 39/196 (19%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQ--- 958
L DVS + RPG + L+G +GAGKTTL ++++G R T G +G I+G P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHEIAR 74
Query: 959 ----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMF--------------VEE 1000
TF + P +T+ E+++ +A R + EE
Sbjct: 75 LGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAEE 126
Query: 1001 VMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060
++E V + L + G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 127 LLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181
Query: 1061 VMRTVRNTVDTGRTVV 1076
+ +R + G TV+
Sbjct: 182 LAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 3e-18
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGS-ISISGYPKK 957
Q L+DV+ G + A++G SGAGK+TL+ L G T G I + + I+ K
Sbjct: 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK 74
Query: 958 QETFARIS-GYCEQNDIHSPNVTIYESLL-----YSAWLRLPKDMFVEEVMELVEMKALR 1011
+ R G Q P +++ E++L Y++ R +F +E + + AL
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE-DKAQALDALE 133
Query: 1012 NSLVGL-----PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
VG+ LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 134 R--VGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILK 191
Query: 1067 --NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
N D G TV+ +HQ +D+ + + + + + G +++ GP
Sbjct: 192 DINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-18
Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 25/191 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP---KKQETFA 962
L VS PG A++G SG+GK+TL+ LAG ++G +++ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDG 1022
R C Q D H + T+ E+L + D EE+ +E L + L LP DG
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEELWAALERVGLADWLRALP--DG 460
Query: 1023 LSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
L T +R+RL +A L+A+ I+ +DEPT LDA A ++ + +
Sbjct: 461 LDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALS 519
Query: 1072 GRTVVCTIHQP 1082
GRTVV H
Sbjct: 520 GRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 7e-18
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI--EGSISISGYPKKQE---T 960
L DVS RPG AL+G +GAGK+TL +L T Y+ EG IS++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWL----RLPKDMFVEEVMELVEMKALRNSLVG 1016
AR+ +Q + ++++ ++L Y A L R + E++ + + + V
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVR 131
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 1075
L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G +V
Sbjct: 132 -----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSV 186
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110
+ H +D EA D L ++ R G V+ G
Sbjct: 187 LWATHL--VDEIEADDRLVVLHR-GRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYP--KKQETF 961
+ V+ R G + +G +GAGKTT + +L R T G + ++GY ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKV 64
Query: 962 ARISGYCEQNDIHSPNVTIYESL-LYSAWLRLPKDMF---VEEVMELVEMKALRNSLVGL 1017
R G Q ++T E+L + LPKD EE++EL E+ + VG
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG- 123
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G T++
Sbjct: 124 ----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 1078 TIH 1080
T H
Sbjct: 180 TTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 27/211 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI--EGSISISGYPKKQETFAR 963
L +VS R G A++G G+GK+TL+ +LAG Y GS+ + G +Q A
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL----YKPTSGSVLLDGTDIRQLDPAD 75
Query: 964 IS---GYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP-- 1018
+ GY Q D+ T+ +++ A L D E ++ E+ + + + P
Sbjct: 76 LRRNIGYVPQ-DVTLFYGTLRDNITLGA--PLADD---ERILRAAELAGVTDFVNKHPNG 129
Query: 1019 -------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
GLS QR+ + +A L+ +P I+ +DEPTS +D + + +R +
Sbjct: 130 LDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-G 188
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102
+T++ H+PS+ + D + +M G V
Sbjct: 189 DKTLIIITHRPSLL--DLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 2e-17
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK--- 956
R L+ VS PG ALVG SGAGK+TL+++L G EGSI+++G P
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADA 389
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP--KDMFVEEVMELVEM----KAL 1010
+++ + Q+ TI E++ L P D + E +E + AL
Sbjct: 390 DADSWRDQIAWVPQHP-FLFAGTIAENIR----LARPDASDAEIREALERAGLDEFVAAL 444
Query: 1011 R---NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
++ +G G GLS Q +RL +A + + ++ +DEPT+ LDA A V+ +R
Sbjct: 445 PQGLDTPIGEGGA-GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA 503
Query: 1068 TVDTGRTVVCTIHQPSI 1084
+ GRTV+ H+ ++
Sbjct: 504 -LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 3e-17
Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 30/223 (13%)
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISI 951
K+ G + L+D+S + G ALVG SG GK+TL+ ++AG R T G + +
Sbjct: 8 KTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLV 63
Query: 952 SGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKAL 1010
G P R GY Q D P +T+ +++ L+ +PK E EL+E+
Sbjct: 64 DGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLEL--- 118
Query: 1011 RNSLVGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
VGL G + LS R+R+ +A L +P ++ +DEP S LDA + +
Sbjct: 119 ----VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
Query: 1066 RNTV-DTGRTVVCTIHQPSIDIFEAF---DELFLM-KRGGHVI 1103
+ +TG+TV+ H DI EA D + ++ R G ++
Sbjct: 175 LDIWRETGKTVLLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 4e-17
Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 24/233 (10%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETF 961
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 962 ARISGYCEQNDIHSPNVTIYESLLY------SAW-LRLPKDM-FVEEVMELVEMKALRNS 1013
AR EQ+ + +T+ + + S W P D V+ + E+ L +
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR 133
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
+ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR TG
Sbjct: 134 -----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLV-EYFEAVPGV 1125
TVV +H +++ ++ + ++ GG V+ AGP L AV GV
Sbjct: 189 TVVAALH--DLNLAASYCDHVVVLDGGRVVAAGPPR---EVLTPALIRAVYGV 236
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 68/258 (26%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+P R L D+S +K L++GP GSGK+TLL+ L+G + SG V G
Sbjct: 9 YPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGK 63
Query: 239 ELTEFVPQ---RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294
+LT+ + R + Q+ D TV E + F LG+
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL----------------- 106
Query: 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI---SGGQKK 351
P+ EI+ + L+++GL+ D R SGGQK+
Sbjct: 107 ---PEEEIEE--------------RVEEALELVGLEGLRD--------RSPFTLSGGQKQ 141
Query: 352 RVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411
RV +L L +DE + GLD + +++ ++++ T+II T+D
Sbjct: 142 RVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIV-------THD 193
Query: 412 L------FDDIILLSEGE 423
L D +I+L +G+
Sbjct: 194 LDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 5e-17
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 11/186 (5%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGYIEGS-ISISGYPKKQETFA 962
L ++ + G LVG SGAGK+TL+ ++ + T G I + +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 963 RIS-GYCEQNDIHSPNVTIYESLLYSAWLRL---PKDMFVEEVMELVEMKALRNSLVGLP 1018
R G Q+ P+ +YE++ ++ L + P + V +E+ L + LP
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRKRVPAALELVGLSHKHRALP 134
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
LS +++R+ IA +V +P+I+ DEPT LD +M ++ G TVV
Sbjct: 135 --AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVA 192
Query: 1079 IHQPSI 1084
H +
Sbjct: 193 THAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 5e-17
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 23/212 (10%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI----EGSISISGYPKK 957
R+ L D+S + G + L+G +GAGKTT + ++ G I G + G P
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLD 65
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMF---VEEVMELVEMKALRNS 1013
RI GY + P + + + L+Y A L+ L K+ ++E +E +E+ N
Sbjct: 66 IAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK 124
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
V+ LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1074 TVVCTIHQPSIDIFEAF-DELFLMKRGGHVIY 1104
TV+ + HQ +++ E D + L+ +G V+Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 5e-17
Identities = 67/245 (27%), Positives = 104/245 (42%), Gaps = 36/245 (14%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGY------- 954
+L V G + A++G SG+GK+TL+ ++ G R +G I I G
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSE 77
Query: 955 PKKQETFARISGYCEQNDIHSPNVTIYES--LLYSAWLRLPKDMFVEEVMELVEMKALRN 1012
+ E R+ G Q ++T++E+ +LP+ + ELV MK
Sbjct: 78 EELYEIRKRM-GVLFQQGALFSSLTVFENVAFPLREHTKLPE----SLIRELVLMKL--- 129
Query: 1013 SLVGLPGVDG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
LVGL G LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R
Sbjct: 130 ELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189
Query: 1067 NTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP---LGRQSHKLV-EYFEA 1121
D G TV+ H + D + G VI G L V ++F
Sbjct: 190 ELNDALGLTVIMVTHDLDS-LLTIADR-VAVLADGKVIAEGTPEELLASDDPWVRQFFNG 247
Query: 1122 VPGVP 1126
+ P
Sbjct: 248 IRDGP 252
|
Length = 263 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 59/251 (23%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE---- 242
+L DVS VKP ++GP G+GK+TLL+A+ G + SG + G L +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKR 69
Query: 243 --FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
+VPQR D ++VR+ + +G+ L LS+ +K
Sbjct: 70 IGYVPQR---RSIDRDF---PISVRDVV-----LMGLYGHKGLFRRLSKADKAK------ 112
Query: 301 EIDAFMKATAMSGLKT-SLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
+D ++ +S L +G +SGGQ++RV L
Sbjct: 113 -VDEALERVGLSELADRQIGE------------------------LSGGQQQRVLLARAL 147
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL--LQPAPETYDLFDDII 417
V L +DE G+D T I +R++ +T+++ L + FD ++
Sbjct: 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVL---EYFDRVL 203
Query: 418 LLSEGEIVYQG 428
LL +V G
Sbjct: 204 LL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGY------PKK 957
L+DV+ G L+G SG GK+TL+ ++AG T G I I G P+K
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT----SGEILIDGRDVTDLPPEK 74
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVG 1016
+ QN P++T+YE++ + LR +PK + V E+ ++ L + L
Sbjct: 75 RGI-----AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR 129
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRT 1074
P LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G T
Sbjct: 130 KPL--QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGTT 186
Query: 1075 VVCTIHQPSIDIFEA---FDELFLMKRG 1099
+ H D EA D + +M G
Sbjct: 187 TIYVTH----DQVEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 27/208 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI--EGSISISGYPKKQETFAR 963
L+D++ + +PG A+VG +GAGKTTL+++L Y +G I I G + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 964 IS---GYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP-G 1019
+ G Q D + TI E++ R EEV+E + + ++ LP G
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG---RPNATD--EEVIEAAKEAGAHDFIMKLPNG 128
Query: 1020 VD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
D LS +R+ L IA ++ +P I+ +DE TS +D ++ + +
Sbjct: 129 YDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK- 187
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRT + H+ S I A D++ ++ G
Sbjct: 188 GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 25/206 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETFA 962
+ D+S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP----PEK 76
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPG--- 1019
R G Q+ P++T+ E++ + L++ K + E+ VE +AL LVGL G
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVE-EAL--ELVGLEGFAD 131
Query: 1020 --VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVV 1076
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T V
Sbjct: 132 RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFV 191
Query: 1077 CTIHQPSIDIFEAF---DELFLMKRG 1099
H D EA D + +M G
Sbjct: 192 YVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 3e-16
Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 62/261 (23%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEFVP 245
IL D+S + +T +LGP GSGK+TLL+ L+G L+ SG V G ++ P
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG----LLKPKSGEVLLDGKDIASLSP 71
Query: 246 Q---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
+ + AY+ Q +TV E + LG L S+ +++ +
Sbjct: 72 KELAKKLAYVPQSPSAPFGLTVYELV-----LLGRYPHLGLFGRPSKEDEEI-------V 119
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI---SGGQKKRVTTGEML 359
+ ++ + L R + SGG+++RV L
Sbjct: 120 EEALELLGLEHLAD--------------------------RPVDELSGGERQRVLIARAL 153
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF------ 413
L +DE ++ LD + +++ +R + +T+++ L +DL
Sbjct: 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-------HDLNLAARYA 206
Query: 414 DDIILLSEGEIVYQGPREYVL 434
D +ILL +G+IV QG E VL
Sbjct: 207 DHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 4e-16
Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 71/263 (26%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYC 236
+ K++ L VS ++ ++GP GSGK+TLL L G + SG V
Sbjct: 10 YGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-----SGEVRVD 64
Query: 237 GHELTEFVPQ-------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRFELLAEL 287
G ++++ + R ++ Q + ++T E + EL L
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQS--FNLLPDLTALENV-------------ELPLLL 109
Query: 288 SRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347
+ K + +A + L+ +GL + +E+ SG
Sbjct: 110 AGVPKK---------ERRERAEEL------------LERVGLGDRLNHYP-SEL----SG 143
Query: 348 GQKKRVTTGEMLVGPAKALFMDEISTG-LDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406
GQ++RV L K + DE TG LDS T +++ +R++ T+++
Sbjct: 144 GQQQRVAIARALANDPKIILADE-PTGNLDSETGKEVMELLRELNKEAGTTIVVV----- 197
Query: 407 PETYD-----LFDDIILLSEGEI 424
T+D D II L +G+I
Sbjct: 198 --THDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 4e-16
Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 59/269 (21%)
Query: 178 LFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDK-SLRVSGRVT 234
L + L DVS ++ LL+GP GSGK+TLL+ L+G K + V G T
Sbjct: 9 LSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68
Query: 235 YCGHELTEFVPQRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRFELLAELSRREKD 293
L E + + Q+ TV + + F LG+ R E +
Sbjct: 69 SSEKSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------PREEIE 116
Query: 294 AGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRV 353
+ L+++GL+ D N SGGQK+RV
Sbjct: 117 ERVA------------------------EALELVGLEELLDRPPFNL-----SGGQKQRV 147
Query: 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL- 412
+L + L +DE + GLD +++ ++++ T+II T+DL
Sbjct: 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-------THDLE 200
Query: 413 -----FDDIILLSEGEIVYQG-PREYVLD 435
D +++L +G+I+ G P E D
Sbjct: 201 LVLEYADRVVVLDDGKILADGDPAEIFND 229
|
Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 915 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI--------EGSISISGYPKKQETFARI 964
+T + G SGAGK+TL+ +AG + GG I + I+ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDM--FVEEVMELVEMKALRNSLVGLPGVDG 1022
G Q P++ + E+L + + ++ V+E+++L+ + L N
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1081
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 1082 PSIDIFEAF---DELFLMKRG 1099
S EA D + +M+ G
Sbjct: 192 LS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 8e-16
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 61/234 (26%)
Query: 204 LLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT---EFVPQRTCAYISQHDLHHG 260
LLG G+GKTT L+ L+G+ + SG G+ + + Q Y Q D
Sbjct: 33 LLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLG-YCPQFDALFD 88
Query: 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGT 320
E+TVRE L F R G L + E +
Sbjct: 89 ELTVREHLRFYARLKG----------LPKSEIKEEV------------------------ 114
Query: 321 DYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 380
+ +L++LGL A+ +SGG K++++ L+G L +DE ++GLD ++
Sbjct: 115 ELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169
Query: 381 FQIVRFMRQMVHITDVTMIISLLQPAPETYD------LFDDIILLSEGEIVYQG 428
I + ++ ++I++ T+ L D I ++S+G++ G
Sbjct: 170 RAIWDLILEVRK--GRSIILT-------THSMDEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 9e-16
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 15/208 (7%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISG---YPKKQET 960
L+ +S G + +G +GAGKTT + +L+G + T G + ++G + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKF 92
Query: 961 FARISGYCEQNDIHSPNVTIYESL-LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPG 1019
RI Q ++ + +S L +A LP F + + EL E+ L L+ P
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDL-EELLDTP- 150
Query: 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCT 1078
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G TV+ T
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210
Query: 1079 IHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
H DI EA L+ G ++Y G
Sbjct: 211 SHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFA 962
L +S G L G +G+GKTTL+ ++AG G+I + G A
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA----AGTIKLDGGDIDDPDVA 72
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDG 1022
Y + P +T+ E+L + A +++ + +E V + L + LP
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH----LPFGY- 127
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G V+ H P
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP 187
Query: 1083 SIDIFEA 1089
+ + A
Sbjct: 188 -LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 50/200 (25%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQ---E 959
+L++VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPN 72
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPG 1019
GY Q+D +F + E +
Sbjct: 73 ELGDHVGYLPQDDE----------------------LFSGSIAENI-------------- 96
Query: 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
LS QR+RL +A L NP I+ +DEP S LD + + + G T +
Sbjct: 97 ---LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153
Query: 1080 HQPSIDIFEAFDELFLMKRG 1099
H+P + D + +++ G
Sbjct: 154 HRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 18/192 (9%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQE 959
+L D++ G + A++G SG+GK+TL++++ + G Y+ G + KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 960 TFARIS-GYCEQNDIHSPNVTIYESL-LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGL 1017
F R GY QN N T+ E+L L + +L K +E E + +AL VGL
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSK----KEKREKKK-EALEK--VGL 124
Query: 1018 PG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1072
+ LS +++R+ +A ++ P +I DEPT LD + V+ + D G
Sbjct: 125 NLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEG 184
Query: 1073 RTVVCTIHQPSI 1084
+T++ H P +
Sbjct: 185 KTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 29/210 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+D++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT----SGEVLLDGRPVTGPGPDI 74
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDG 1022
GY Q D P +T+ +++ LR K E EL+E+ VGL G +
Sbjct: 75 --GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL-------VGLAGFED 125
Query: 1023 -----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1076
LS R+R+ IA L P ++ +DEP LDA + + +T +TV+
Sbjct: 126 KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
Query: 1077 CTIHQPSIDIFEAF---DELFLMKRGGHVI 1103
H D+ EA D + ++ I
Sbjct: 186 LVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 25/206 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYP--KKQETF 961
++ VS R G + L+G +GAGKTT + +L + T G +++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWL----RLPKDMFVEEVMELVEMKALRNSLVGL 1017
R G Q+ +T +E+L A L + ++E+++ V + + LV
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK- 130
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVV 1076
S R+RL IA LV P ++F+DEPT GLD + A V + + G T++
Sbjct: 131 ----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTIL 186
Query: 1077 CTIHQPSIDIFEA---FDELFLMKRG 1099
T H + EA D + ++ G
Sbjct: 187 LTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 65/273 (23%), Positives = 99/273 (36%), Gaps = 54/273 (19%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+ SK + + DVS + +T LLG G+GKTTLL+ ++
Sbjct: 11 YGSKVQAVR---DVSFEAEEGEITGLLGENGAGKTTLLRMIA------------------ 49
Query: 239 ELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFE---LLAELSRREKDAG 295
T +P I D VR +G F L A L+ RE
Sbjct: 50 --TLLIPDSGKVTIDGVDTVRDPSFVRR---------KIGVLFGERGLYARLTARE---- 94
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
+ F + +S + + K L L D VG S G K++V
Sbjct: 95 -----NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAI 144
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415
LV L +DE ++GLD T + F++Q+ + + S E L D
Sbjct: 145 ARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS--HIMQEVEALCDR 202
Query: 416 IILLSEGEIVYQGPREYVLDFFESVGFRCPERK 448
+I+L +GE+V +G E + R E
Sbjct: 203 VIVLHKGEVVLEGSIEALD---ARTVLRNLEEI 232
|
Length = 245 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 7/176 (3%)
Query: 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQET-FARIS- 965
+S + G L+G +GAGKTT + +L G GSIS+ G P AR
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRV 82
Query: 966 GYCEQNDIHSPNVTIYESLL-YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLS 1024
G Q D P+ T+ E+LL + + L V L+E L N V LS
Sbjct: 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK--ADAKVGELS 140
Query: 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H
Sbjct: 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 4e-15
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI--EGSISISGYPKK 957
+ Q+L VS G + AL+G +GAGKTTL+ + G G I +G I+G P
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR-DITGLP-- 68
Query: 958 QETFARIS---GYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELV-EM----KA 1009
R GY + P +T+ E+LL A+ R + +E V E+ K
Sbjct: 69 --PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK--RKARLERVYELFPRLKE 124
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
R L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 1070 DTGRTVV 1076
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 6e-15
Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 61/259 (23%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV--SGRVTYC 236
+ + ++L D++ + P + +L GP GSGKTTLL + G LR G +
Sbjct: 11 YGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG-----LRSVQEGSLKVL 65
Query: 237 GHEL-----TEFVP-QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSR 289
G EL E V +R YI Q H+L G +T R+ + + EL LS
Sbjct: 66 GQELYGASEKELVQLRRNIGYIFQAHNLL-GFLTARQNVQMA---------LELQPNLSY 115
Query: 290 REKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR---RGIS 346
+E +A AM L+ +GL G+ + +S
Sbjct: 116 QEARE------------RARAM------------LEAVGL--------GDHLDYYPHNLS 143
Query: 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406
GGQK+RV LV K + DE + LDS + +V M+++ T I ++
Sbjct: 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCT--ILIVTHD 201
Query: 407 PETYDLFDDIILLSEGEIV 425
D+ D I+ + +G+++
Sbjct: 202 NRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 6e-15
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 20/217 (9%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP---KKQET 960
+LL VS RPG + A++G +GAGK+TL+ L+G + G ++++G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAW-LRLPKDMFVEEVMELVEMKALRNSLVGLPG 1019
AR QN + T+ E + R ++ EE + L GL G
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE--PEEDERIAAQALAATDLSGLAG 130
Query: 1020 VD--GLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
D LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190
Query: 1072 GRTVVCTIHQPSIDIFEAF-DELFLMKRGGHVIYAGP 1107
G V+ +H +++ + D + L+ + G VI +G
Sbjct: 191 GGAVLAVLH--DLNLAAQYADRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 7e-15
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 27/194 (13%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI--EGSISISGYP---KKQE 959
+L ++S +PG + +VG SG+GK+TL ++ Y+ G + + G+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLALADPA 72
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVME----------LVEMKA 1009
R G Q NV S+ + L P M +E V+E + E+
Sbjct: 73 WLRRQVGVVLQE-----NVLFNRSIRDNIALADPG-MSMERVIEAAKLAGAHDFISELPE 126
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
+++VG G GLS QR+R+ IA L+ NP I+ DE TS LD + +MR + +
Sbjct: 127 GYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC 185
Query: 1070 DTGRTVVCTIHQPS 1083
GRTV+ H+ S
Sbjct: 186 A-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 9e-15
Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 43/247 (17%)
Query: 888 DMPAEMKSQGIEENR----------LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937
+ P +K G++ + ++ +QD+S G + +G +GAGK+T + +L
Sbjct: 12 NYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71
Query: 938 G--RKTGGYIEGSISISGY-P-KKQETFARISGYC-----------EQNDIHSPNVTIYE 982
G T G + ++G P +++E + R G D IYE
Sbjct: 72 GLLLPTSGKV----RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE 127
Query: 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS 1042
+P D F E + L E+ L + P V LS QR R +A L+ P
Sbjct: 128 ---------IPDDEFAERLDFLTEILDL-EGFLKWP-VRKLSLGQRMRAELAAALLHPPK 176
Query: 1043 IIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101
++F+DEPT GLD A A + ++ + TV+ T H DI D + L+ + G
Sbjct: 177 VLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQ 234
Query: 1102 VIYAGPL 1108
+++ G L
Sbjct: 235 LVFDGTL 241
|
Length = 325 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 9e-15
Identities = 63/232 (27%), Positives = 95/232 (40%), Gaps = 52/232 (22%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKKQ--- 958
+L+ +S PG ALVG SG GK+T++ +L R Y G I + G +
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RF---YDPTSGEILLDGVDIRDLNL 72
Query: 959 ETFARISGYCEQNDIHSP---NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV 1015
G Q P + TI E++ Y D EEV E + + + ++
Sbjct: 73 RWLRSQIGLVSQE----PVLFDGTIAENIRYGK-----PDATDEEVEEAAKKANIHDFIM 123
Query: 1016 GLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
LP DG T Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 124 SLP--DGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA 181
Query: 1065 VRNTVDTGRTVVCTIHQPS-------IDIFEA--------FDELFLMKRGGH 1101
+ + GRT + H+ S I + + DE LM + G
Sbjct: 182 L-DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDE--LMAQKGV 230
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 9e-15
Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 27/246 (10%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
+ + ++S PG + L+G +GAGKTT ++ G EG I+ +G P QE R
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNR 73
Query: 964 ISGYC-EQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPG--V 1020
I GY E+ ++ P +T+ + L Y A L K M E+ + ++ R +VG +
Sbjct: 74 I-GYLPEERGLY-PKMTVEDQLKYLAEL---KGMPKAEIQKKLQAWLERLEIVGKKTKKI 128
Query: 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
LS ++++ ++ P ++ +DEP SGLD ++ + + G T++ + H
Sbjct: 129 KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSH 188
Query: 1081 QPSIDIFEAFDELFLMKRGGHVIYAGPL-------GR-----QSHKLVEYFEAVPGVPKI 1128
+ + E D L ++K+G V+Y G + G+ +S +E +PG+ KI
Sbjct: 189 RME-HVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKRLVIESDLSLEELANIPGILKI 246
Query: 1129 ---RDG 1131
+DG
Sbjct: 247 TETKDG 252
|
Length = 300 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 9e-15
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 28/233 (12%)
Query: 893 MKSQGIEENRLQL--------LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY 944
M+ GI N + + L+D S G + ALVGV+G+GK+TL L G
Sbjct: 2 MQQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA- 60
Query: 945 IEGSISISGYPKKQETFARISGYCEQND-------IHSPNVTIYESLLYSAWLRLPKD-- 995
G ISI G P +Q + Y Q++ + +V + + WLR K
Sbjct: 61 -SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD 119
Query: 996 -MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
V + V+M R+ +G LS Q+KR+ +A + +I +DEP +G+D
Sbjct: 120 RQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
Query: 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ A ++ +R D G+T++ + H + E D ++K G V+ +GP
Sbjct: 175 VKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 26/212 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L VS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 964 ISGYCEQND-----IH-----SPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS 1013
S + +H PN+++ E++ + + M + L
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 1014 LVGLPG---VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070
+ + V LS QR+ + IA L + ++ +DEPT+ L + + +R
Sbjct: 134 GLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA 193
Query: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102
G ++ H+ ++FE D + +++ G V
Sbjct: 194 QGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 68/266 (25%), Positives = 113/266 (42%), Gaps = 58/266 (21%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+P+ K+ L DVS + P L+GP G+GK+TLL+ L+G + + SG V G
Sbjct: 10 YPNGKK---ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGT 63
Query: 239 ELTEFVPQ------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRFELLAEL-SR 289
++ + + R I Q + ++V E + SGR LG + + L L +
Sbjct: 64 DINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENV-LSGR-LGRRSTWRSLFGLFPK 119
Query: 290 REKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349
EK + L+ +GL A +SGGQ
Sbjct: 120 EEKQRAL-------------------------AALERVGLLDKAYQRADQ-----LSGGQ 149
Query: 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPET 409
++RV L+ K + DE LD +++ Q++ ++++ +T+I+SL Q
Sbjct: 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV---- 205
Query: 410 YDL----FDDIILLSEGEIVYQGPRE 431
DL D I+ L +G IV+ GP
Sbjct: 206 -DLAREYADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKK 957
++ L DVS + + G LVG SG+GK+TL + G + T G +G + +
Sbjct: 17 SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76
Query: 958 QETFARISGYCEQNDIHS--PNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV 1015
++ + Q+ + S P +TI E + LR+ + +E + + L V
Sbjct: 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEP--LRIHGKLSKKEARKEAVLLLLV--GV 132
Query: 1016 GLPGVDG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
GLP LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 133 GLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 19/209 (9%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQE 959
L D+S + G L AL+G SGAGK+TL+ ++AG G I + +
Sbjct: 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA 73
Query: 960 TFARISGYCEQNDIHSPNVTIYESL---LYSAWLRLPKDMFVEEVMELVEMKALRNSLVG 1016
R G+ Q+ P++T+ +++ L R + V EL+ LV
Sbjct: 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLR-------LVQ 126
Query: 1017 LPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD- 1070
L G+ LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 127 LEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186
Query: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
G T V H + E D + ++ +G
Sbjct: 187 LGVTTVFVTHDQE-EALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 11/186 (5%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG-----YPKKQET 960
L DVS R G L G SGAGKTTL+ +L G T G + I+G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 961 FARIS-GYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLP 1018
R G Q+ P+ T+YE++ +R + V + L + P
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G TV+
Sbjct: 136 EQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193
Query: 1079 IHQPSI 1084
H S+
Sbjct: 194 THDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 5e-14
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 40/201 (19%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQ- 958
L + DVS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 959 ------ETFARISGYCEQNDIHSPNVTIYESLL--------------YSAWLRLPKDMF- 997
TF Q P +T+ E++ + ++
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 998 -VEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
E++E V + L + G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1057 AAAIVMRTVRNTVDT-GRTVV 1076
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 41/217 (18%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISGYPK 956
+L+DVS G A+VG SG+GK+T++ DV GSI I G
Sbjct: 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---------SGSILIDGQDI 65
Query: 957 K---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS 1013
+ ++ R G Q D N TI ++ Y D EEV+E + + +
Sbjct: 66 REVTLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDK 119
Query: 1014 LVGLPGVDG-----------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062
++ P DG LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 120 IMRFP--DGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+R V GRT + H+ S I A D++ ++K G
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 5e-14
Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 59/257 (22%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP--- 245
L +VS ++P ++G GSGK+TLL+ L G + G V G ++ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 246 QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
+R Y+ Q L +G T+R+ + LG P + +
Sbjct: 538 RRNIGYVPQDPRLFYG--TLRDNI-----ALGA--------------------PYADDEE 570
Query: 305 FMKATAMSGLKTSLGTDYV-LKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
++A ++G+ T++V GLD+ +G E R +SGGQ++ V L+
Sbjct: 571 ILRAAELAGV-----TEFVRRHPDGLDM----QIG-ERGRSLSGGQRQAVALARALLRDP 620
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII-----SLLQPAPETYDLFDDIIL 418
L +DE ++ +D+ + + +++ + T+++ SLL DL D II+
Sbjct: 621 PILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-------DLVDRIIV 671
Query: 419 LSEGEIVYQGPREYVLD 435
+ G IV GP++ VL+
Sbjct: 672 MDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 64/217 (29%), Positives = 102/217 (47%), Gaps = 28/217 (12%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR----KTGGYIEGSISISGYPKKQET 960
+L D+S + G +TAL+G +G GK+TL+ A R ++G G IS +Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 961 FARISGYCEQNDIHSPNVTIYESLLY--SAWLRL-----PKD-MFVEEVMELVEMKALRN 1012
AR Q+ + +T+ E + Y S WL L +D V + ME + L +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD 133
Query: 1013 SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1072
+ LS QR+R +A+ L + ++ +DEPT+ LD +MR +R G
Sbjct: 134 RRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQG 188
Query: 1073 RTVVCTIHQPSIDIFEA---FDELFLMKRGGHVIYAG 1106
+TVV +H D+ +A D L ++ GHV+ G
Sbjct: 189 KTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 44/248 (17%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-R 247
L DV+ V + LLGP GSGK+TLL+ ++G SGR+ G + T + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDR 72
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
++ QH +TVR+ + F G+ R K
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAF-----GLEIR----------------KHPKA------ 105
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
K + +L+++ L+ +G+ +SGGQ++RV L + L
Sbjct: 106 -------KIKARVEELLELVQLE-----GLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
+DE LD+ ++ ++R++ VT + + E ++ D I+++S G+I
Sbjct: 154 LDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQI 212
Query: 428 GPREYVLD 435
G + V D
Sbjct: 213 GSPDEVYD 220
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 14/196 (7%)
Query: 892 EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEG 947
E ++ E L D+S G + G +GAGKTTL+ +LAG R G Y +G
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63
Query: 948 SISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLL-YSAWLRLPKDMFVEEVMELVE 1006
+E++ + Y +T E+L + + + E + V
Sbjct: 64 E----PIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVG 119
Query: 1007 MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
+ L + VG LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 120 LAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMA 174
Query: 1067 NTVDTGRTVVCTIHQP 1082
G V+ T HQP
Sbjct: 175 AHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 6e-14
Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 62/254 (24%)
Query: 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF 243
K L VS + M LLGP G+GKTTL++ L+ + S SG + G ++ +
Sbjct: 11 GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 244 VP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
+R Y+ Q + TVRE LD+ G+ P E
Sbjct: 67 PQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PSKE 106
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
+ A + D VL+++ L A +G +SGG ++RV + LVG
Sbjct: 107 VKARV--------------DEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVG 147
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHI-TDVTMIISLLQPAPETYDLFD------ 414
L +DE + GLD + +RF + + D +I+S T+ + D
Sbjct: 148 DPSILIVDEPTAGLDPE---ERIRFRNLLSELGEDRIVILS-------THIVEDVESLCN 197
Query: 415 DIILLSEGEIVYQG 428
+ +L++G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 8e-14
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISI 951
G + L +VS G +VG SG+GK+TL +LAG + + GSI +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 952 SG--YPKKQET--FARISGYCEQNDIHS--PNVTIYESLLYSAWLRLPKDMFVEEVMELV 1005
G K+ F R Q+ S P T+ L + + EL+
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-SEPLRPHGLSKSQQRIAELL 125
Query: 1006 EMKALRNS-LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055
+ L S L P LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 126 DQVGLPPSFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 8e-14
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 24/167 (14%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI-EGSISISGYPKK 957
L+D+S + + G L+G SG GKTTL+ ++AG R+T G I +G I+ P +
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWL---RLPKDMFVEEVMELVEMKALRNSL 1014
+ + G Q+ PN+T+ +++ Y L + + E V EL++ L
Sbjct: 75 KRDY----GIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLD-------L 121
Query: 1015 VGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
VGLPG + LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
Query: 897 GIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI----- 951
G R Q+L D++ PG + L G SG+GKTTL+ ++ G ++ EGS+ +
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQEL 69
Query: 952 SGYPKKQETFARIS-GYCEQ--NDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMK 1008
G +K+ R + GY Q N + +T +++ + L L ++ +E E
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERAR-A 124
Query: 1009 ALRNSLVGL-------PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
L VGL P LS Q++R+ IA LV P ++ DEPT+ LD+++ V
Sbjct: 125 MLE--AVGLGDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 1062 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+ ++ + G T++ H I + D + M+ G
Sbjct: 181 VELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 60/254 (23%)
Query: 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEFVPQRTC 249
DVS V+P + L+GP G+GKTTL +SG LR SG V + G ++T P
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF----LRPTSGSVLFDGEDITGLPPHEIA 73
Query: 250 AY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
I Q E+TV E + ++A +R + +
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENV--------------MVAAQARTGSGLLLARARREERE 119
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
+ A +L+ +GL AD G +S GQ++R+ L K
Sbjct: 120 ARERAEE----------LLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKL 164
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQMV----------HITDVTMIISLLQPAPETYDLFDD 415
L +DE + GL+ T ++ +R++ H DV M L D
Sbjct: 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVM------------SLADR 212
Query: 416 IILLSEGEIVYQGP 429
+ +L +G ++ +G
Sbjct: 213 VTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFA--- 962
L+D+S G ALVG SG+GK+TL++++ + G I I G+ + T A
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDYTLASLR 75
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP---- 1018
R G Q D+ N T+ E++ Y EEV E ++ LP
Sbjct: 76 RQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATREEVEEAARAANAHEFIMELPEGYD 129
Query: 1019 ---GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
G G LS QR+R+ IA L+ +P I+ +DE TS LD + +V + + R
Sbjct: 130 TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NR 188
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102
T H+ S I A D + +++ G V
Sbjct: 189 TTFVIAHRLST-IENA-DRIVVLEDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 29/217 (13%)
Query: 889 MPAEM--------KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940
MPAE K+ G E L +L+ V + G A+VG SG+GK+TL+ VLAG
Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 941 TGGYIEGSISISGYP---KKQETFARIS----GYCEQNDIHSPNVTIYESLLYSAWLR-- 991
G + + G P ++ A + G+ Q+ PN+T E++ LR
Sbjct: 61 DPS--SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 992 LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051
D L+E L L P LS +++R+ +A P ++F DEPT
Sbjct: 119 SSADSR-AGAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTG 175
Query: 1052 GLD----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1084
LD + A ++ R + G T+V H P +
Sbjct: 176 NLDRATGDKIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 1e-13
Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 55/199 (27%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L VS + R G + AL+G +GAGK+TLM +L+G + G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEV------- 64
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGL 1023
SP A R G+ V L
Sbjct: 65 --------SFASPR------------------------------DARRA---GIAMVYQL 83
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083
S +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143
Query: 1084 IDIFEAFDELFLMKRGGHV 1102
++FE D + +++ G V
Sbjct: 144 -EVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 33/244 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP----KKQETF 961
L DVS G +T+++G +GAGK+TL+ + R G I+I G +E
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKELA 74
Query: 962 ARISGYCEQNDIHSPNVTIYESLL------YSAWLRLPKD--MFVEEVMELVEMKALRNS 1013
++S ++N I+S +T+ L+ YS RL K+ + E +E + ++ L +
Sbjct: 75 KKLSILKQENHINS-RLTV-RDLVGFGRFPYSQG-RLTKEDRRIINEAIEYLHLEDLSDR 131
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G 1072
+ D LS QR+R IA+ L + + +DEP + LD + + +M+ +R D G
Sbjct: 132 YL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG 186
Query: 1073 RTVVCTIHQPSIDIFEA---FDELFLMKRGGHVIYAGPLGR--QSHKLVEYFEAVPGVPK 1127
+T+V +H DI A D + +K G V+ G Q L E ++ V +
Sbjct: 187 KTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGSPDEIIQPEILSEIYDMDIPVEE 241
Query: 1128 IRDG 1131
I
Sbjct: 242 INGK 245
|
Length = 252 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 2e-13
Identities = 64/261 (24%), Positives = 99/261 (37%), Gaps = 61/261 (23%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEF 243
K +IL VS V + LLG G+GKTTLL+ + G L SG + + G ++T
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG----LLPPRSGSIRFDGRDITGL 67
Query: 244 VPQRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
P Y+ + E+TV E L LL +RR A K
Sbjct: 68 PPHERARAGIGYVPEGRRIFPELTVEENL--------------LLGAYARR--RAKRKAR 111
Query: 300 PE--IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
E + F + LK + G +SGG+++ +
Sbjct: 112 LERVYELFPR------LKERRKQ---------------LAGT-----LSGGEQQMLAIAR 145
Query: 358 MLVGPAKALFMDEISTGLD---SSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414
L+ K L +DE S GL F+ +R +R VT+++ Q A ++ D
Sbjct: 146 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD----EGVTILLV-EQNARFALEIAD 200
Query: 415 DIILLSEGEIVYQGPREYVLD 435
+L G +V +G +L
Sbjct: 201 RAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-13
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 37/242 (15%)
Query: 871 LPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKT 930
L S+ F++V++ + +L+D+S + PG A+VG SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 931 TLMDVLAGRKTGGYIE---GSISISGYPKKQETFA---RISGYCEQNDIHSPNVTIYESL 984
TL+ +L + G I I G + + + G Q D + TI E++
Sbjct: 370 TLIKLLLR-----LYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGTIRENI 423
Query: 985 LYSAWLRLPKDMFVEEVMELVEMKALRNSL-------VGLPGVDGLSTEQRKRLTIAVEL 1037
++ +EE ++L +L VG GV LS QR+RL IA L
Sbjct: 424 ALGRPDATDEE--IEEALKLANAHEFIANLPDGYDTIVGERGV-NLSGGQRQRLAIARAL 480
Query: 1038 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1097
+ NP I+ +DE TS LD A++ ++ + GRT + H+ S + D + ++
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLD 537
Query: 1098 RG 1099
G
Sbjct: 538 NG 539
|
Length = 567 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 68/241 (28%), Positives = 101/241 (41%), Gaps = 47/241 (19%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIE---GSISISGYPKKQET- 960
+ +++ G L+G SG+GKTT M + IE G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 961 --FARISGYCEQNDIHSPNVTIYESL-LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGL 1017
R GY Q P++T+ E++ L L+ PK+ E EL+ LVGL
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA-------LVGL 123
Query: 1018 PGV-------DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------ 1064
LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 124 DPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEF 178
Query: 1065 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP---LGRQSHKLVEY 1118
R + G+T+V H DI EAF D + +MK G V P L ++ V
Sbjct: 179 KRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234
Query: 1119 F 1119
F
Sbjct: 235 F 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-13
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSIS-----I 951
+ R+ ++DVS PG + +VG SG+GK+TL L G + G G + +
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDL 77
Query: 952 SGYPKKQET--FARISGYCEQNDIHS--PNVTIYESLLYSAWLR--LPKDMFVEEVMELV 1005
G +++ + Q+ + S P +TI + + + L + + +EL+
Sbjct: 78 LGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELL 137
Query: 1006 EMKALRNSLVGLPGVDG-------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058
E VGLP + LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 138 EQ-------VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 1059 AIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
A ++ +++ + G V+ H + + E D + +M +G
Sbjct: 191 AQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 68/264 (25%)
Query: 177 RLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVT 234
+++ K+E L DV+ ++ ++GP GSGK+TLL L G K SG V
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-----SGEVL 63
Query: 235 YCGHELTEFVPQ-------RTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRFELLAE 286
G +LT+ + + ++ Q +L ++TV E + EL
Sbjct: 64 INGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENV-------------ELPLL 109
Query: 287 LSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346
+ AG A + + GL+ L +E+ S
Sbjct: 110 I------AGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------------SEL----S 144
Query: 347 GGQKKRVTTGEMLVGPAKALFMDEISTG-LDSSTTFQIVRFMRQMVHITDVTMIISLLQP 405
GGQ++RV L+ K + DE TG LDS T +++ +R++ T+I+
Sbjct: 145 GGQQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRELNKERGKTIIMV---- 199
Query: 406 APETYDL-----FDDIILLSEGEI 424
T+D D +I L +G+I
Sbjct: 200 ---THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 3e-13
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 26/220 (11%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYP-KK 957
++Q L+ VS G + AL+G +GAGKTTL+ + G R G I G
Sbjct: 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR----SGRIIFDGEDITG 69
Query: 958 QETFARIS---GYCEQNDIHSPNVTIYESLLYSAWLR---LPKDMFVEEVMELV-EMKAL 1010
R Y + P +T+ E+LL A+ R ++ +EEV EL +K
Sbjct: 70 LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER 129
Query: 1011 RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070
RN G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 130 RNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK 184
Query: 1071 TGRTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
G + + Q + A D ++++ G ++ +G
Sbjct: 185 EGGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-13
Identities = 58/171 (33%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK---QET 960
+L DVS PG A+VG SG+GK+TL+ +L G +T GS+ G +
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGLDVQA 524
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP-- 1018
R G QN +I+E++ A L L +E E M L + +P
Sbjct: 525 VRRQLGVVLQNGRLMSG-SIFENIAGGAPLTL------DEAWEAARMAGLAEDIRAMPMG 577
Query: 1019 -------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062
G LS QR+RL IA LV P I+ DE TS LD R AIV
Sbjct: 578 MHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI--EGSISISGYPKKQETF 961
L++VS G ++G +G+GK+ L++ +AG + G I G I+ P ++
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK-DITNLPPEKRDI 73
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKDMFVEEVMELVEMKALRNSLVGLPGV 1020
Y QN P++T+Y+++ Y R K +V+E+ EM + + L P
Sbjct: 74 ----SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET 129
Query: 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
LS +++R+ IA LV NP I+ +DEP S LD R + ++ V +
Sbjct: 130 --LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 1081 QPSIDIFEAFDELFLMKRG 1099
+ + D++ +M G
Sbjct: 188 HDFEEAWALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETFA 962
L+DVS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 963 RIS-GYCEQNDIHSPNVTIYESLLYSAWLRL---PKDMFVEEVMELVEMKALRNSLVGLP 1018
R G Q+ P+ T+YE++ LR+ P V E++++ L++ LP
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRRRVSEVLDLVGLKHKARALP 135
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
LS +++R+ IA +V P+++ DEPT LD + +MR G TV+
Sbjct: 136 --SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193
Query: 1079 IH 1080
H
Sbjct: 194 TH 195
|
Length = 223 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-13
Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGS-ISISGYPKKQE 959
N+ Q L V G + AL+G SG+GK+TL+ L+G TG GS I + G ++E
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 960 -TFAR-------ISGYCEQNDIHSPNVTIYESLLYSAWLRLPK-DMFVEEVMELVEMKAL 1010
AR +GY Q +++ E++L A P + +AL
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 1011 RN-SLVGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+ + VG+ V LS Q++R+ IA L+ +I DEP + LD +A IVM T
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 1065 VRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
+R+ G TVV T+HQ +D + E + R GHV Y G
Sbjct: 195 LRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 5e-13
Identities = 65/254 (25%), Positives = 102/254 (40%), Gaps = 49/254 (19%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
+L D+S + P ++G GSGK+TLL+ L G GR+ G +L +
Sbjct: 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLA 543
Query: 247 ---RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRFEL-LAELSRREKDAGIKPDPE 301
R Y+ Q L G ++RE + E E+ + AG
Sbjct: 544 SLRRQVGYVLQDPFLFSG--SIRENIALG--------NPEATDEEIIEAAQLAGA----- 588
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
F++ M G T +G E +SGGQ++R+ L+
Sbjct: 589 -HEFIENLPM-GYDTPVG--------------------EGGANLSGGQRQRLALARALLS 626
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421
K L +DE ++ LD T I++ + Q + T+II + T D II+L +
Sbjct: 627 KPKILLLDEATSALDPETEAIILQNLLQ--ILQGRTVII--IAHRLSTIRSADRIIVLDQ 682
Query: 422 GEIVYQGPREYVLD 435
G+IV QG E +L
Sbjct: 683 GKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 52/267 (19%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+P + L DV+ + M ++GP G+GK+TLL++L+G D + SG + + G
Sbjct: 13 YPGGHQ---ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGV 66
Query: 239 ELTEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREK 292
++T+ +R I Q ++V E + GR T L S+ +K
Sbjct: 67 QITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV-LLGRLGYTSTWRSLFGLFSKEDK 125
Query: 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKR 352
A+ L+ +G+ A +SGGQ++R
Sbjct: 126 AQ---------------ALDALER----------VGILDKAYQRAST-----LSGGQQQR 155
Query: 353 VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL 412
V LV K + DE LD + +++ ++ + +T+I++L Q DL
Sbjct: 156 VAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-----VDL 210
Query: 413 ----FDDIILLSEGEIVYQGPREYVLD 435
D II L G IV+ GP + D
Sbjct: 211 AKKYADRIIGLKAGRIVFDGPASELTD 237
|
Length = 258 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 5e-13
Identities = 52/174 (29%), Positives = 71/174 (40%), Gaps = 26/174 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
+ DVS R G LVG SG+GK+TL +LAG + GSI G
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS----GSIIFDGQDLDLTGGEL 362
Query: 964 ISG-----YCEQNDIHS--PNVTIYESLLYSAWLRLPKDM-------FVEEVMELVEMKA 1009
Q+ S P +T+ + L LR+ V E++ELV +
Sbjct: 363 RRLRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLP- 419
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 420 -PEFLDRYP--HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 5e-13
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 9/180 (5%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP-KKQETFAR 963
++ +S G L+G +GAGK+T+ ++ G + G I++ G P + AR
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLAR 113
Query: 964 IS-GYCEQNDIHSPNVTIYESLL-YSAWLRLPKDMFVEEVM-ELVEMKALRNSLVGLPGV 1020
G Q D T+ E+LL + + + +E V+ L+E L + V
Sbjct: 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-STREIEAVIPSLLEFARLESK--ADARV 170
Query: 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H
Sbjct: 171 SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 6e-13
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 7/179 (3%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK-KQETFAR 963
++ D+S G L+G +GAGK+T+ +L G + G I++ G P + AR
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLAR 76
Query: 964 IS-GYCEQNDIHSPNVTIYESLL-YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD 1021
++ G Q D P T+ E+LL + + + + L+E L S + V
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVR-VA 134
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 7e-13
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL 402
RG+S Q+KR+T G L LF+DE ++GLDS + IVRF++++ + ++ ++
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTI 165
Query: 403 LQPAPETYDLFDDIILLSE-GEIVYQG 428
QP+ ++ FD ++LL G+ VY G
Sbjct: 166 HQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 7e-13
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 35/222 (15%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARI 964
L+DVS G L ++G SG GKTTL++++AG T GSI ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDG- 1022
G QN+ P + + +++ + LR + K E +++ +LVGL G +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML-------ALVGLEGAEHK 128
Query: 1023 ----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGR 1073
LS R+R+ IA L P ++ +DEP LD A+ ++ + +TG+
Sbjct: 129 YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD----ALTREQMQELLLDLWQETGK 184
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKL 1115
V+ H DI EA LFL R V+ + GR +L
Sbjct: 185 QVLLITH----DIEEA---LFLATR--LVVLSPGPGRVVERL 217
|
Length = 259 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 8e-13
Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 23/216 (10%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGYIEGSISISGYPKKQET 960
++++DVS G + L+G +GAGKTT ++ G R G I IS P
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVE-------EVMELVEMKALRNS 1013
I GY Q +++Y++L+ A L++ D+ E E+ME ++ LR+S
Sbjct: 77 RRGI-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
+ LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G
Sbjct: 134 MG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 1074 TVVCTIH--QPSIDIFEAFDELFLMKRGGHVIYAGP 1107
V+ T H + ++ + E +++ +G + + P
Sbjct: 189 GVLITDHNVRETLAVCE---RAYIVSQGHLIAHGTP 221
|
Length = 241 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-13
Identities = 62/244 (25%), Positives = 99/244 (40%), Gaps = 48/244 (19%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-Q 246
L D+S V+P LLGP G GKTTLL+ ++G SG + G ++T P +
Sbjct: 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPER 71
Query: 247 RTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
R + Q H +TV E + F + GV P EI A
Sbjct: 72 RNIGMVFQDYALFPH--LTVAENIAFGLKLRGV--------------------PKAEIRA 109
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
++ +L+++GL+ + N +SGGQ++RV L
Sbjct: 110 RVRE--------------LLELVGLEG-----LLNRYPHELSGGQQQRVALARALAREPS 150
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424
L +DE + LD+ ++ ++++ +T I E L D I +++EG I
Sbjct: 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRI 209
Query: 425 VYQG 428
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 16/208 (7%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKK 957
L DVS G L AL+G SG+GKTTL+ ++AG R G I G + P +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYS-----AWLRLPKDMFVEEVMELVEMKALRN 1012
+ R G+ Q+ ++T+++++ + R P+ +V EL+++ L
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW 128
Query: 1013 SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 1071
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 129 LADRYP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
T V H + E D + +M +G
Sbjct: 187 HVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 1e-12
Identities = 70/273 (25%), Positives = 107/273 (39%), Gaps = 84/273 (30%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEFVP 245
+L DVS ++P + +LGP G+GK+TLL+ALSG L SG V G L ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG----ELSPDSGEVRLNGRPLADWSP 71
Query: 246 Q---RTCAYISQHDLHHGEMTVRETLDFS---------GRCLGVGTRFELLAELSRREKD 293
R A + QH +L F GR A +
Sbjct: 72 AELARRRAVLPQH----------SSLSFPFTVEEVVAMGR-----------APHGLSRAE 110
Query: 294 AGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRV 353
D + A + ++ L G DY +SGG+++RV
Sbjct: 111 D----DALVAAALAQVDLAHLA---GRDY--------------------PQLSGGEQQRV 143
Query: 354 TTGEMLV------GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407
+L GP + L +DE ++ LD + ++R RQ+ H + +I+ L
Sbjct: 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL----- 198
Query: 408 ETYDL------FDDIILLSEGEIVYQGPREYVL 434
+DL D I+LL +G +V G VL
Sbjct: 199 --HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 889 MPAE--------MKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940
MPAE KS G E+ L +L V + G AL+G SG+GK+TL+ +LAG
Sbjct: 1 MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60
Query: 941 TGGYIEGSISISGYP-------KKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP 993
G G +S+ G P + + A+ G+ Q+ + P + E++ A LR
Sbjct: 61 DGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGE 118
Query: 994 KD-MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052
L+E L L LP LS +++R+ +A P ++F DEPT
Sbjct: 119 SSRQSRNGAKALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGN 176
Query: 1053 LD 1054
LD
Sbjct: 177 LD 178
|
Length = 228 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 64/277 (23%), Positives = 109/277 (39%), Gaps = 64/277 (23%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
E+L DV+ ++ +LLGP G GK+TLL+ ++G + + SG + G ++T+
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLP 71
Query: 245 PQ-RTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIK 297
P+ R A + Q H MTV E + F + L + + E D +K
Sbjct: 72 PEKRGIAMVFQNYALYPH------MTVYENIAFGLK----------LRGVPKAEIDKRVK 115
Query: 298 PDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
V K+LGL+ ++ N +SGGQ++RV
Sbjct: 116 E------------------------VAKLLGLE---HLL--NRKPLQLSGGQRQRVALAR 146
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
LV K +DE + LD+ + ++++ T I E L D I+
Sbjct: 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIV 205
Query: 418 LLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFL 454
++++G I G + + P A F+
Sbjct: 206 VMNDGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 67/257 (26%), Positives = 107/257 (41%), Gaps = 51/257 (19%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
+L VS ++P + +LGP G+GK+TLL+ALSG+ SG VT G L + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 247 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
R A + Q+ TV+E + G E+D I
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSG---------REPEEDERI-----AA 117
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML---- 359
+ AT +SGL DY R +SGG+++RV +L
Sbjct: 118 QALAATDLSGLAGR---DY--------------------RTLSGGEQQRVQLARVLAQLW 154
Query: 360 --VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
V + LF+DE ++ LD + +R RQ+ + ++++L D I+
Sbjct: 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIV 212
Query: 418 LLSEGEIVYQGPREYVL 434
LL +G ++ G + VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 62/258 (24%), Positives = 96/258 (37%), Gaps = 65/258 (25%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEF 243
K++ L VS V+ + LLG G+GKTTLL+ + G +R SGR+ + G ++T
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG----LVRPRSGRIIFDGEDITGL 70
Query: 244 VPQRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
P AY+ + +TV E L LL R + D
Sbjct: 71 PPHERARLGIAYVPEGRRIFPRLTVEENL--------------LLG-AYARRDKEAQERD 115
Query: 300 PEI--DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG----ISGGQKKRV 353
E + F LK E R +SGG+++ +
Sbjct: 116 LEEVYELFP----------------RLK--------------ERRNQRAGTLSGGEQQML 145
Query: 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL--QPAPETYD 411
L+ K L +DE S GL +I ++++ +T+ LL Q A +
Sbjct: 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI---LLVEQNARFALE 202
Query: 412 LFDDIILLSEGEIVYQGP 429
+ D +L G IV G
Sbjct: 203 IADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-12
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 25/196 (12%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ 958
+ + L++ + G A++G SG+GK+TL+ +LAG +GSI+++G
Sbjct: 347 PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--- 401
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR----LPK-DMFVEEVMELVEMKALRNS 1013
I+ EQ + +V L+S LR L D EE+ ++ L
Sbjct: 402 -----IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456
Query: 1014 LVGLP-------GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
L P G G LS +R+RL +A L+ + + +DEPT GLD V+
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 1065 VRNTVDTGRTVVCTIH 1080
+ + G+T++ H
Sbjct: 517 LFEHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 27/232 (11%)
Query: 897 GIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGYIEGSISISG 953
+ ++ + VS + G + +VG SG+GK+ L + G + + G I G
Sbjct: 12 PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71
Query: 954 ---YPKKQETFARISG----YCEQNDIHS--PNVTIYESLLYSAWLRLPKDMFVEEVMEL 1004
++ +I G Q+ + S P +TI + K + +E E
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI-GDQIAEVLRLHGKGLSKKEAKER 130
Query: 1005 VEMKALRNSLVGLPGVDG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
++ L LVG+P + LS R+R+ IA+ L NP ++ DEPT+ LD
Sbjct: 131 A-IELLE--LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
Query: 1057 AAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
A ++ ++ + G ++ H + + E D + +M G ++ GP
Sbjct: 188 VQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 30/168 (17%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQETF 961
L D+S + PG L L+G +GAGKTTLMDV+ G R G +G ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 962 ARISGYCEQNDIHS--PNVTIYESLLYSAWLRLPKDMF--------------VEEVMELV 1005
AR G + + N+T+ E+L + L K +F ++E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELA--LNRDKSVFASLFARLRAEERRRIDELLATI 135
Query: 1006 EMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053
+ R+ L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 136 GLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 12/151 (7%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
+ ++S + L+G +GAGK+TL+ ++ G R T G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGL 1023
I E ++ N+T E+L L D ++EV+ +V+ L N+ G
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTLLGLPDSRIDEVLNIVD---LTNT--GKKKAKQF 125
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-12
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 11/246 (4%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFAR 963
+L D+S G L AL+G SG GKTTL+ +AG + G I+I+ R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWL-RLPKDMFVEEVMELVEMKALRNSLVGLPGVDG 1022
QN P++ + +++ + ++PK E V + +++ L ++ LP
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA--Q 137
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIH 1080
LS ++R+ IA + P ++ +DEP S LDA A + + + T++C H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197
Query: 1081 QPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHK----LVEYFEAVPGVPKIRDGYNPAT 1136
D D+ +MK G + P E+ A +P I G A
Sbjct: 198 DQD-DALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAANILPAIALGITEAP 256
Query: 1137 WVLEVS 1142
+++VS
Sbjct: 257 GLVDVS 262
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 9/186 (4%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPK 956
L + +S G + G +G GKTTL+ +LAG R G + + + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR--WNGTALAE 66
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVG 1016
+++ R Y P ++ E+L + A + +E+ + V + +
Sbjct: 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA 126
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076
LS Q++RL +A ++ + +DEPT+ LD A++ +R + G V+
Sbjct: 127 Q-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVL 181
Query: 1077 CTIHQP 1082
T HQ
Sbjct: 182 LTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 48/194 (24%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR-VSGRVTYCGHELTEFVP 245
+ +S + +L GP GSGKTTLL+ ++G L +G + G ++ +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG----LLPPAAGTIKLDGGDIDDPDV 71
Query: 246 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
C Y+ + +TV E L+F LG + +I A
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAA- 110
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
L+ +GL A + G +S GQK+RV +LV
Sbjct: 111 -----------------ALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPI 148
Query: 366 LFMDEISTGLDSST 379
+DE + LD++
Sbjct: 149 WILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 3e-12
Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 47/204 (23%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIE---GSISISGYPKKQ-- 958
LL DVS RPG + A++G +GAGK+TL+ L+ G + G + ++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWS 70
Query: 959 -ETFARISGYCEQNDIHSPNVTIYESLLY------------SAWLRLPK--DMFVEEVME 1003
AR Q HS SL + + D V +
Sbjct: 71 PAELARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALA 120
Query: 1004 LVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARA 1057
V++ L P LS +++R+ +A L P + +DEPTS LD
Sbjct: 121 QVDLAHLAGRD--YP---QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 1058 AAIVMRTVRN-TVDTGRTVVCTIH 1080
V+R R + G V+ +H
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 3e-12
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 42/177 (23%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISG--- 953
L+D++ +TAL+G SG GK+TL+ D++ G + +EG + + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNI 76
Query: 954 YPKKQETFA---RISGYCEQNDIHSPNV---TIYESLLYSAWLRLPKDMFVEEVMELVEM 1007
Y K + R+ G Q PN +IY+++ Y L KD +E+ E+VE
Sbjct: 77 YDPKVDVVELRRRV-GMVFQ----KPNPFPMSIYDNVAYGLRLHGIKD---KELDEIVE- 127
Query: 1008 KALRNSLVGL----------PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+L+ L + GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 128 SSLK--KAALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-12
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 930 TTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS----GYCEQNDIHSPNVTIYESLL 985
+TL+ ++ G G+I + G + ++ G Q+ P +T+ E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 986 YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1045
+ D EE +E V + + V LS Q++R+ IA L+ P ++
Sbjct: 59 FGL-RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALLKKPKLLL 113
Query: 1046 MDEPTS 1051
+DEPT+
Sbjct: 114 LDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 36/237 (15%)
Query: 892 EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGYIE--- 946
E+K+ + N ++L D+S PG A+VG +GAGKTTL+ +L G + G +
Sbjct: 33 ELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLG 92
Query: 947 ---GSISISGYPKKQETFARISGYC--EQNDIHSPNVTIYESLLYSAW--------LRLP 993
G E RI G E ++ T+ + +L S + L
Sbjct: 93 RRFGKGETI-----FELRKRI-GLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLT 145
Query: 994 KDMF--VEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051
+ + ++EL+ K L + G LS +++R+ IA LV +P ++ +DEP
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 1052 GLDARAAAIVMRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
GLD A ++ + ++ H +I F L+K G V+ G
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKK 957
+ +++ VS + + G + L+G +GAGKTT ++ G + G I I+ P
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 958 QETFARIS-GYCEQNDIHSPNVTIYESLL-------YSAWLRLPKDMFVEEVMELVEMKA 1009
+ AR+ GY Q +T+ E++L S R K +EE++E +
Sbjct: 71 KR--ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK---LEELLEEFHITH 125
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
LR S LS +R+R+ IA L NP + +DEP +G+D A + + ++
Sbjct: 126 LRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
D G V+ T H + D +++ G V+ G
Sbjct: 181 DRGIGVLITDHNVR-ETLSITDRAYII-YEGKVLAEG 215
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 16/158 (10%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETFA 962
L VS + G L+G SG GKTTL+ ++AG T G I I+ P
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP----PHK 71
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMF---VEEVMELVEMKALRNSLVGLP 1018
R QN P++T++E++ + L+ LPK V E ++LV+++ N
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP--- 128
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 --SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-12
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFA 962
L+ +S + + G A++G SG+GK+TL ++ G GS+ + G KQ ETF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP---- 1018
+ GY Q D+ T+ E++ R ++ E+++E ++ + ++ LP
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIA-----RFGENADPEKIIEAAKLAGVHELILRLPDGYD 445
Query: 1019 ---GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
G G LS QR+R+ +A L +P ++ +DEP S LD + ++ G
Sbjct: 446 TVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRG 1099
TVV H+PS + D++ +++ G
Sbjct: 506 TVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 59/212 (27%), Positives = 106/212 (50%), Gaps = 17/212 (8%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+ ++ + G +TA++G +GAGK+TL L G + + G I Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 964 IS-GYCEQNDIHSP-NVTIYESLLYSAW-LRLPKDMF---VEEVMELVEMKALRNSLVGL 1017
S G Q+ + + ++Y+ + + A L+LP+D V+ ++ ++ L++
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDK---- 137
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1076
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G T++
Sbjct: 138 -PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196
Query: 1077 CTIHQPSIDIFEAF-DELFLMKRGGHVIYAGP 1107
H IDI + D +F+MK G ++ P
Sbjct: 197 IATH--DIDIVPLYCDNVFVMKEGRVILQGNP 226
|
Length = 283 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 64/253 (25%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L DVS V+P R LLGP G+GK+TL L+ G+++ GH+L P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 249 CAYI------SQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
A + DL +++VR+ L + L LSR E A I
Sbjct: 73 LARLGVVFQQPTLDL---DLSVRQNLRY----------HAALHGLSRAEARARIAEL--- 116
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
L LGL AD V R ++GG ++RV L+
Sbjct: 117 ---------------------LARLGLAERADDKV-----RELNGGHRRRVEIARALLHR 150
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDV-----TMIISLLQPAPETYDLFDDII 417
L +DE + GLD ++ I +R + + T ++ ++ D ++
Sbjct: 151 PALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLV 203
Query: 418 LLSEGEIVYQGPR 430
+L G ++ G
Sbjct: 204 VLHRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 5e-12
Identities = 70/306 (22%), Positives = 117/306 (38%), Gaps = 68/306 (22%)
Query: 171 GVLGFLRLF-PSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKS 226
G+ G L F K+R +E + D+S + + LG G+GK+T L+ L+G +
Sbjct: 21 GLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK 80
Query: 227 LRVSGRVTYCGHELTEFVPQRT-CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLA 285
+RV+G P R Y+ L M + L + L E+L
Sbjct: 81 VRVNG-----------KDPFRRREEYLRSIGL---VMGQKLQLWW---DLPALDSLEVLK 123
Query: 286 ELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345
+ EI A + L L + LK +R+ +
Sbjct: 124 LIY------------EIPDDEFAERLDFLTEILDLEGFLK-------------WPVRK-L 157
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQP 405
S GQ+ R L+ P K LF+DE + GLD + I F+++ T++++
Sbjct: 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT---- 213
Query: 406 APETYDLFDDI-------ILLSEGEIVYQGP-REYVLDFFE----SVGFRCPERKGAADF 453
T+ FDDI +L+ +G++V+ G + F SV + +
Sbjct: 214 ---THI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSLSQLAL 269
Query: 454 LQEVTS 459
L +VT
Sbjct: 270 LGDVTI 275
|
Length = 325 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 32/213 (15%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISG----YPKK 957
+ L+ ++ G + AL+G +GAGK+TL G + T G + I G Y KK
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKYDKK 71
Query: 958 QETFARIS-GYCEQN---DIHSPNVTIYESLLYSAW-LRLPKDMFVEEVMELVEMKALRN 1012
R + G QN + +P T+ E + + L L K+ + V E AL+
Sbjct: 72 SLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKE-----ALKA 124
Query: 1013 SLVGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
VG+ G + LS Q+KR+ IA L P II +DEPTSGLD A+ +M+ + +
Sbjct: 125 --VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYD 182
Query: 1068 TVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1099
G T++ + H +D+ + D++++M G
Sbjct: 183 LNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 30/218 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIE---GSISISGYPKKQE--- 959
+ DV+ G L+G SG+GKTT + + IE G I I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLY----SAWLRLPKDMFVEEVMELVEMKALRNSLV 1015
R GY Q P++T+ E++ W + +E+++LV +
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDP-SEYAD 130
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTVDTG 1072
P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++ G
Sbjct: 131 RYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LG 186
Query: 1073 RTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
+T+V H DI EA D + +M G V Y P
Sbjct: 187 KTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQETF 961
L D++ G L+G SG GKTT + ++AG T G YI G PK
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD---- 71
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
R QN P++T+Y+++ + LR +PKD E V E+ E+ + + L P
Sbjct: 72 -RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-- 128
Query: 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 14/204 (6%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETF 961
Q L DV+ G L AL+G SG+GK+TL+ ++AG + G I ++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 962 A-RISGYCEQNDIHSPNVTIYESLLYSAWLRLP----KDMFVEEVMELVEMKALRNSLVG 1016
R G+ Q+ ++T+ +++ + +R VEE++ELV+++ L +
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR--- 126
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TV 1075
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T
Sbjct: 127 YP--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT 184
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRG 1099
V H + E D + +M G
Sbjct: 185 VFVTHDQE-EAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 7e-12
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 42/228 (18%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
+DVS PG + +VG SG+GKTTL++ L+ R G + + +S
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALS 79
Query: 966 ------------GYCEQN--DIHSPNVT----IYESLLYSAW-----LRLPKDMFVEEVM 1002
G+ Q+ D V+ I E L+ +R + +
Sbjct: 80 EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT----AGDWL 135
Query: 1003 ELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062
E VE+ A R + LP S ++RL IA LV +P ++FMDEPT GLD A ++
Sbjct: 136 ERVEIDAAR--IDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
Query: 1063 RTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRGGHVIYAG 1106
+R V + G VV H D+ A L +MK+ G V+ +G
Sbjct: 192 DLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQ-GRVVESG 234
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 8e-12
Identities = 67/261 (25%), Positives = 112/261 (42%), Gaps = 49/261 (18%)
Query: 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEF 243
L ++DVS V+P + L+GP G+GKTTL ++G K SG V + G ++T
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-----SGTVIFRGRDITGL 71
Query: 244 VPQRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
P R I+ Q +TV E + G +G L +R+E+
Sbjct: 72 PPHRIARLGIARTFQITRLFPGLTVLENV-AVGAHARLGLSGLLGRPRARKEERE----- 125
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
+ A +L+ +GL AD GN +S GQ++R+ L
Sbjct: 126 ------ARERARE----------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARAL 164
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII-----SLLQPAPETYDLFD 414
K L +DE + GL+ T ++ +R++ VT+++ L+ L D
Sbjct: 165 ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLAD 218
Query: 415 DIILLSEGEIVYQGPREYVLD 435
I++L+ GE++ +G E V +
Sbjct: 219 RIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-12
Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 52/246 (21%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVP- 245
L D++ +K ++T L+G G+GK+TLL L G G + G +L + P
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-----QGEIRVNGIDLRDLSPE 391
Query: 246 --QRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
++ +++SQ+ L G T+RE + LLA ++ EI
Sbjct: 392 AWRKQISWVSQNPYLFAG--TIRENI--------------LLARPDASDE--------EI 427
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
A + + ++V K GLD V E G+SGGQ +R+ L+ P
Sbjct: 428 IAALDQAGLL--------EFVPKPDGLD-----TVIGEGGAGLSGGQAQRLALARALLSP 474
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422
A L +DE + LD+ T I++ ++++ V +I L+ A + D I++L G
Sbjct: 475 ASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADA----DRIVVLDNG 530
Query: 423 EIVYQG 428
+V QG
Sbjct: 531 RLVEQG 536
|
Length = 559 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 62/253 (24%), Positives = 103/253 (40%), Gaps = 51/253 (20%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF---- 243
L +++ + P ++GP G+GK+TLL+ ++ + S SG + G ++T+
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKK 73
Query: 244 ---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
+ +R I QH +TV E + GR T LL S +K
Sbjct: 74 LRKLRRRI-GMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK-------- 123
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
+A L+ +GL A +SGGQ++RV L
Sbjct: 124 -----ERAL------------SALERVGLADKAYQRADQ-----LSGGQQQRVAIARALA 161
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL----FDDI 416
+ DE LD T+ Q++ +++++ +T+II+L Q DL D I
Sbjct: 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLAKKYADRI 216
Query: 417 ILLSEGEIVYQGP 429
+ L GEIV+ G
Sbjct: 217 VGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 59/250 (23%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-- 246
L +VS ++ ++G GSGK+TLL+ L+G + SG V G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 247 -RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
R Y+ Q L +G T+R+ + L D D I
Sbjct: 77 RRNIGYVPQDVTLFYG--TLRDNI-----------------TLGAPLAD-----DERI-- 110
Query: 305 FMKATAMSGLKTSLGTDYVLKI-LGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
++A ++G+ TD+V K GLD+ +G E RG+SGGQ++ V L+
Sbjct: 111 -LRAAELAGV-----TDFVNKHPNGLDL----QIG-ERGRGLSGGQRQAVALARALLNDP 159
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII-----SLLQPAPETYDLFDDIIL 418
L +DE ++ +D ++ ++ +RQ+ + D T+II SLL DL D II+
Sbjct: 160 PILLLDEPTSAMDMNSEERLKERLRQL--LGDKTLIIITHRPSLL-------DLVDRIIV 210
Query: 419 LSEGEIVYQG 428
+ G IV G
Sbjct: 211 MDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 46/235 (19%)
Query: 198 PSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVP--QRTCAYIS 253
+T + G G+GK+TLL+ ++G K D V +P QR +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
Q + VRE L F G + RE I D +D G
Sbjct: 82 QQYALFPHLNVRENLAF-------GLKR-----KRNREDR--ISVDELLDLL-------G 120
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
L L Y ++ SGG+K+RV L + L +DE +
Sbjct: 121 L-DHLLNRYPAQL-------------------SGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
LD + Q++ ++Q+ ++ +I + E L D I+++ +G + Y G
Sbjct: 161 ALDRALRLQLLPELKQIKKNLNIPVIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-11
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 28/216 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKKQ---ET 960
L +VS RPG A++G G+GK+TL+ +L G Y EGS+ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP-G 1019
R GY Q D T+ +++ A D EE++ E+ + + P G
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA--PYADD---EEILRAAELAGVTEFVRRHPDG 590
Query: 1020 VD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
+D LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++ +
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-A 649
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
G+T+V H+ S + + D + +M G ++ GP
Sbjct: 650 GKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 53/260 (20%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQ 246
L DVS + + LLGP GSGKTTLL+ ++G + D G + + G + T+ Q
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS-----GTILFGGEDATDVPVQ 72
Query: 247 -RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
R ++ QH MTV + + F G+ R K +P +A
Sbjct: 73 ERNVGFVFQHYALFRHMTVFDNVAF-----GL------------RVKPRSERPP---EAE 112
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
++A +LK++ LD + + +SGGQ++RV L K
Sbjct: 113 IRAKVHE----------LLKLVQLD-----WLADRYPAQLSGGQRQRVALARALAVEPKV 157
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI- 424
L +DE LD+ ++ R++R++ VT + + E ++ D ++++++G I
Sbjct: 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIE 216
Query: 425 -------VYQGPR-EYVLDF 436
VY P +V F
Sbjct: 217 QVGTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETF 961
LL +S F G +T L+G +G+GK+TL+ +L GR EG I + P + + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLP-----------KDMFVEEVMELVEMKAL 1010
AR Y Q + +T+ E + A R P VEE + LV +K L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140
Query: 1011 RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTV 1069
+ L VD LS +R+R IA+ + + + +DEPTS LD V+ V R +
Sbjct: 141 AHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ G TV+ +H I++ + + + RGG +I G
Sbjct: 196 ERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-11
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 31/215 (14%)
Query: 901 NRLQ--LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPK 956
+ L+ L+++ S +PG ALVG SG+GK+T+ ++AG + G I G P+
Sbjct: 488 SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPR 543
Query: 957 KQETFARISG---YCEQNDIH------SPNVTIYE-SLLYSAWLRLPKDMFVEEVMELVE 1006
++ ++ +Q DI N+T+++ ++ + +R KD + +V +
Sbjct: 544 EEIPREVLANSVAMVDQ-DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDV--ITS 600
Query: 1007 MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
++ + G + LS QR+RL IA LV NPSI+ +DE TS LD I+ +R
Sbjct: 601 RPGGYDAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
Query: 1067 NTVDTGRTVVCTI--HQPSIDIFEAFDELFLMKRG 1099
R C I H+ S I + DE+ +++RG
Sbjct: 660 R-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 25/165 (15%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETFA 962
L D+S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 963 RISGYCE--QNDIHSPNVTIYESLLYS------------AWLRLPKDMFVEEVMELVEMK 1008
R +G Q N+T++E+L + L + +EEV+E + +
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA 134
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053
+ L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 135 DEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 37/220 (16%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG-----Y 954
+ L DVS G + ++G SGAGK+TL+ ++ + GS+ + G
Sbjct: 16 TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTAL 73
Query: 955 PKKQ-ETFARISGYCEQNDIHSPNV----TIYESLLYSAWLRL---PKDMFVEEVMELVE 1006
+ + + G Q+ N+ T++E++ + L L PK + V EL+E
Sbjct: 74 SEAELRQLRQKIGMIFQH----FNLLSSRTVFENVAFP--LELAGVPKAEIKQRVAELLE 127
Query: 1007 MKALRNSLVGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAI 1060
LVGL LS Q++R+ IA L NP I+ DE TS LD +I
Sbjct: 128 -------LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180
Query: 1061 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1099
+ + G T+V H+ +++ + D + ++ +G
Sbjct: 181 LELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 2e-11
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 181 SKK-RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239
SK+ K L D+S V+ + LLGP G+GKTTL++ + G SG + G +
Sbjct: 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKD 63
Query: 240 LTEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSG 272
+ + + R Y+ + + +TVRE L SG
Sbjct: 64 IKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG 98
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 61/245 (24%), Positives = 98/245 (40%), Gaps = 47/245 (19%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEFVP 245
E + VS V+ + LLGP G+GKTT ++ L+ L+ SGR T GH++
Sbjct: 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT----LLKPTSGRATVAGHDVVREPR 69
Query: 246 --QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
+R + Q E+T E L R GV AE R
Sbjct: 70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPG-----AERRER------------- 111
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
D +L +GL AD +V SGG ++R+ LV
Sbjct: 112 ----------------IDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRP 150
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+ LF+DE + GLD T + ++ ++ +T++++ E L D + ++ G
Sbjct: 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGR 209
Query: 424 IVYQG 428
I+ +G
Sbjct: 210 IIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 55/263 (20%), Positives = 102/263 (38%), Gaps = 58/263 (22%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
FP+ ++ L DVS +K L+G GSGK+TL +A+ G SG + + G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGK 67
Query: 239 ELTEFVPQ------RTCAYISQHDLH--HGEMTVRETLDFSGRCLGVGTRFELLAELSRR 290
+L + + + + Q + + MT+ E +AE R
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIG----------------EQIAEPLRI 111
Query: 291 EKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQK 350
K + +L +GL +++ N +SGGQ+
Sbjct: 112 HG------KLSKKEARKEAVL----------LLLVGVGLP--EEVL--NRYPHELSGGQR 151
Query: 351 KRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI-----ISLLQP 405
+RV L K L DE ++ LD S QI+ ++++ +T++ + ++
Sbjct: 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVA- 210
Query: 406 APETYDLFDDIILLSEGEIVYQG 428
+ D + ++ G+IV +G
Sbjct: 211 -----KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 60/275 (21%), Positives = 102/275 (37%), Gaps = 66/275 (24%)
Query: 178 LFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG 237
LF ++ +++ + DVS ++ L+G GSGK+TL + L+G S SG + + G
Sbjct: 296 LFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDG 352
Query: 238 HELT----EFVPQRTCAYIS-QH-----DLHHGEMTVRETLDFSGRCLGVGTRFELLAEL 287
+L E R + Q + MTV + L R
Sbjct: 353 QDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGDILAEP-------LRIHGGGSG 402
Query: 288 SRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347
+ R + ++ GL Y +E+ SG
Sbjct: 403 AERRAR--------VAELLELV---GLPPEFLDRYP---------------HEL----SG 432
Query: 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI-IS----- 401
GQ++RV L K L +DE + LD S Q++ ++ + +T + IS
Sbjct: 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV 492
Query: 402 LLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDF 436
+ A D + ++ +G IV +GP E V +
Sbjct: 493 VRYIA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-11
Identities = 58/279 (20%), Positives = 106/279 (37%), Gaps = 68/279 (24%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYC 236
FP+ ++ + VS +K + ++G GSGK+ L +A+ G + V G + +
Sbjct: 11 FPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD 70
Query: 237 GHELTEFVPQRTC-------AYISQHDLHHGEMTVRETLDFSGRCLGVGTRF-ELLAELS 288
G +L + A I Q MT +L+ +G + E+L
Sbjct: 71 GKDLLSLSEKELRKIRGKEIAMIFQ-----DPMT---SLNPVMT---IGDQIAEVLRLHG 119
Query: 289 RREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG---- 344
+ +A +A + L+++G+ + RR
Sbjct: 120 KGLSKK--------EAKERAIEL------------LELVGIP--------DPERRLKSYP 151
Query: 345 --ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL 402
+SGG ++RV L K L DE +T LD + QI+ ++++ +I+
Sbjct: 152 HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI- 210
Query: 403 LQPAPETYDL------FDDIILLSEGEIVYQGPREYVLD 435
T+DL D + ++ G IV +GP E +
Sbjct: 211 ------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 38/225 (16%)
Query: 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR------------KTGGYIEGSISISGY 954
+DVS PG + +VG SG+GKTTL+ ++GR + G + +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRD--LYTMSE 80
Query: 955 PKKQETFARIS-GYCEQN--DIHSPNVT----IYESLL-----YSAWLRLPKDMFVEEVM 1002
+++ R G+ QN D V+ I E L+ + +R ++EEV
Sbjct: 81 AERR-RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV- 138
Query: 1003 ELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062
E+ R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 139 ---EIDLDR--IDDLPRT--FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
Query: 1063 RTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
+R V + G VV H ++ A D L +MK+G V+ +G
Sbjct: 192 DLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ-VVESG 234
|
Length = 258 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-11
Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 33/213 (15%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ET 960
++L +++ +PG +VG SG+GK+TL +L T + G + + G
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIADPAW 528
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLR----LPK-DMFVEEVMELVEMKALRNSLV 1015
R G V + E++L+S +R L E V+ ++ + +
Sbjct: 529 LRRQMG-----------VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFIS 577
Query: 1016 GLP-GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
LP G + LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R
Sbjct: 578 ELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR 637
Query: 1067 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+ GRTV+ H+ + A D + ++++G
Sbjct: 638 -EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 68/213 (31%), Positives = 99/213 (46%), Gaps = 29/213 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK-QETFARI 964
L D+S R G + AL+G +GAGK+TL+ +L+G GSI I G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 965 -SG----YCEQNDIH-SPNVTIYESLLYSAWL-RLPKDMFVEEVMELVEMKALRNSLVGL 1017
+G Y E +H P +T+ E+L +L +LP + L + L L
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQ--LEHL 128
Query: 1018 PGVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
GVD LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 -GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102
GR ++ H+ +IF D + + K G +V
Sbjct: 188 AEGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-11
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 16/193 (8%)
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS------GY 967
RPG L+GV+GAGKTT +L G T G +++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 968 CEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027
C Q D +T E L A LR +E+V +++L SL S
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANW-SIQSLGLSLYADRLAGTYSGGN 2075
Query: 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1087
+++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H S++
Sbjct: 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH--SMEEC 2133
Query: 1088 EAF-DELFLMKRG 1099
EA L +M +G
Sbjct: 2134 EALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-11
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI--EGSISISGYPKKQ--- 958
L ++ G ALVG SGAGKT+L++ L G++ +GS+ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL-----GFLPYQGSLKINGIELRELDP 418
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP 1018
E++ + + QN P+ T+ +++L D E++ + +E + L LP
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLP 472
Query: 1019 -GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
G+D GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N
Sbjct: 473 QGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAA 531
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+T + HQ ++ +D++++M+ G
Sbjct: 532 SRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 43/211 (20%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTL------MDVLAGRKTGGYIEGSISISG- 953
N+ + L VS F P +TAL+G SG+GK+TL M+ L T I GSI +G
Sbjct: 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGH 72
Query: 954 --YPKKQETF---ARISGYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELV 1005
Y + +T I +Q PN ++IYE+++Y L+ KD ++V++
Sbjct: 73 NIYSPRTDTVDLRKEIGMVFQQ-----PNPFPMSIYENVVYGLRLKGIKD---KQVLD-- 122
Query: 1006 EMKALRNSLVGLPGVD-----------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+A+ SL G D GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 123 --EAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
Query: 1055 ARAAAIVMRTVRNTVD--TGRTVVCTIHQPS 1083
+A + T+ D T V ++ Q S
Sbjct: 181 PISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 15/195 (7%)
Query: 892 EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSI 949
E E + L +S G + G +G+GKTTL+ +LAG G +
Sbjct: 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV 57
Query: 950 SISGYPKKQE--TFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEM 1007
++G P + + AR Y +++ E+L + W D VEE + V +
Sbjct: 58 LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQVEEALARVGL 115
Query: 1008 KALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
+ V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 116 NGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170
Query: 1068 TVDTGRTVVCTIHQP 1082
G VV T HQ
Sbjct: 171 HCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-11
Identities = 61/273 (22%), Positives = 102/273 (37%), Gaps = 59/273 (21%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG-KSDKSLRVSGRVTYCG 237
F + ++ + DVS V+P + ++G GSGK+TL AL G + SG V G
Sbjct: 15 FATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74
Query: 238 HELTEFVPQ-------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRFELLAELS 288
+L + + A I Q + MT+ + + + R G G+R E
Sbjct: 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV 134
Query: 289 RREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGG 348
+ G+ D + +SGG
Sbjct: 135 ELLEQVGLPDPERRDRY------------------------------------PHQLSGG 158
Query: 349 QKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE 408
++RV L K L DE +T LD +T QI+ ++ + + ++
Sbjct: 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI------- 211
Query: 409 TYDL------FDDIILLSEGEIVYQGPREYVLD 435
T+DL D ++++ +GEIV GP E +L
Sbjct: 212 THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 58/255 (22%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR-VSGRVTYCGHELTEFVPQ 246
+L V V+ + ++GP GSGK+TLL+ + G LR SG V G +++
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL----LRPDSGEVLIDGEDISGLSEA 70
Query: 247 ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
R + Q +TV E + F L E +R +
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAF------------PLREHTRL-------SEE 111
Query: 301 EIDAFMKAT-AMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
EI + GL+ + D+ +SGG KKRV L
Sbjct: 112 EIREIVLEKLEAVGLRGA---------------EDLYPAE-----LSGGMKKRVALARAL 151
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII---SLLQPAPETYDLFDDI 416
+ L DE + GLD + I +R + +T I+ L + + D I
Sbjct: 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL----DTAFAIADRI 207
Query: 417 ILLSEGEIVYQGPRE 431
+L +G+IV +G E
Sbjct: 208 AVLYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (157), Expect = 6e-11
Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 26/240 (10%)
Query: 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937
+ F+ VNY + S+ L D+ + G TAL+G +G+GK+TL+ L
Sbjct: 2 IKFEKVNYTYQPNSPFASRA--------LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLN 53
Query: 938 G--RKTGGYIE-GSISISGYPKKQET--FARISGYCEQNDIHSPNVTIYESLLYSAWLRL 992
G + T G + G I +S K++E + G Q P ++E +
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ----FPESQLFEETVLKDVAFG 109
Query: 993 PKDMFVEEVMELVEMKALRNSLVGLP------GVDGLSTEQRKRLTIAVELVANPSIIFM 1046
P++ + + + ++ A + +VGL LS Q +R+ IA L P ++ +
Sbjct: 110 PQNFGIPK-EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVL 168
Query: 1047 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
DEPT+GLD +A +M+ + +G+TVV H D+ + D ++L+++ GH+I G
Sbjct: 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCG 226
|
Length = 288 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVL-------AGRKTGGYIE--GSISISGY 954
+L + +PG + A++G SG+GKTTL+ + AG G I + S+S
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 955 PKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWL--RLPKDMFVEEVMELVEMKALRN 1012
+ G+ QN P+ T+ E+++ + PK+ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL------- 129
Query: 1013 SLVGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
+ VGL G + LS Q++R+ IA L P +I DEPTS LD V+ T+R
Sbjct: 130 AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189
Query: 1068 TVDTGRTVVCTIHQPS 1083
RT+V H+ S
Sbjct: 190 LAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 7e-11
Identities = 66/259 (25%), Positives = 101/259 (38%), Gaps = 61/259 (23%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG---HELTEFV 244
I+ V P +T LLGP GSGK+TLL+ L+G +G V G H L+
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRA 72
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP-DPEI- 302
R A + Q +TVR+ + L + R AG P D +
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPHRSLWAGDSPHDAAVV 118
Query: 303 DAFMKATAMSGLKT-SLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
D + T +S L + T +SGG+++RV L
Sbjct: 119 DRALARTELSHLADRDMST------------------------LSGGERQRVHVARALAQ 154
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL------FDD 415
K L +DE + LD + + +R++ T VT++ +L +DL D
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAAL-------HDLNLAASYCDH 206
Query: 416 IILLSEGEIVYQGPREYVL 434
+++L G +V GP VL
Sbjct: 207 VVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 8e-11
Identities = 62/251 (24%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
IL ++S +KP + ++G GSGK+TL + + +VP+
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--------------------YVPE 55
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSG--RCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
+ HDL D + R +GV + +L S R+ A P ++
Sbjct: 56 NGRVLVDGHDL--------ALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMER 107
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
++A ++G D++ + L D +VG E G+SGGQ++R+ L+ +
Sbjct: 108 VIEAAKLAG-----AHDFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPR 158
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424
L DE ++ LD + I+R M + V +I L T D II++ +G I
Sbjct: 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS----TVKNADRIIVMEKGRI 214
Query: 425 VYQGPREYVLD 435
V QG + +L
Sbjct: 215 VEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 8e-11
Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 22/216 (10%)
Query: 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR-----KTGGYIE---GSISISGYPK-KQ 958
DVS PG + +VG SG+GK+TL+ LAGR T YI + + + ++
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 959 ETFARIS-GYCEQNDIH------SPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR 1011
R G+ QN S I E L+ + R ++ L E++
Sbjct: 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNIRATAQDWLEEVEIDP 139
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1070
+ LP S ++RL IA LV P ++FMDEPT GLD A ++ +R V D
Sbjct: 140 TRIDDLPRA--FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197
Query: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
G V+ H + A L +M++ G V+ +G
Sbjct: 198 LGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-11
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 12/201 (5%)
Query: 915 PGV-LTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQ-ETFARISGYC 968
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 969 EQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028
Q P++++ +L Y P + + ++E+ + + L LPG LS ++
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFE-RVIELLGIGHLLGRLPG--RLSGGEK 137
Query: 1029 KRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1087
+R+ I L+++P ++ MDEP + LD R I+ R + G ++ H ++
Sbjct: 138 QRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVL 196
Query: 1088 EAFDELFLMKRGGHVIYAGPL 1108
D + +++ G V AGP+
Sbjct: 197 RLADRVVVLED-GRVAAAGPI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 22/166 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK----TGGYIEGSISISG---YPKKQ 958
++DV+ P +TA +G SG GK+T++ L R G +EG + + G Y
Sbjct: 20 VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 959 ETFA--RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS--- 1013
+ A R G Q P ++I ++++ A L+L +++ ELVE K+LR +
Sbjct: 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVE-KSLRGANLW 135
Query: 1014 -----LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+ PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 136 NEVKDRLDKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 22/216 (10%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKK---- 957
+L+ ++ F +T LVG +G GK+TL L+G R G + Y K+
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 958 -QETFARISGYCEQNDIHSPNVTIYESLLYSAW-LRLPKDMF---VEEVMELVEMKALRN 1012
++ A + EQ ++ I + +S L +P+ V+E + LV+ + R+
Sbjct: 75 LRQQVATVFQDPEQQIFYT---DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH 131
Query: 1013 SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1072
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 1073 RTVVCTIHQPSID-IFEAFDELFLMKRGGHVIYAGP 1107
V+ + H ID I+E D ++++++G + + P
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 26/249 (10%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQE- 959
Q + DV+ F G A+VG +G+GK+TL+ + + T G + I+I+ K +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 960 -TFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD--MFVEEVME-----LVEMKALR 1011
+ G Q P ++E + + PK+ M ++EV L+++ R
Sbjct: 81 RPVRKRIGMVFQ----FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR 136
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1070
+ + P +S Q +++ I L NP II +DEPT+GLD ++ VMR +++ D
Sbjct: 137 DVMSQSPF--QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP--LGRQSHKLVEYFEAVPGVPK- 1127
+T++ H + ++ DE+ +MK G V P L + KL ++ +P + +
Sbjct: 195 ENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQL 253
Query: 1128 ---IRDGYN 1133
Y
Sbjct: 254 QYDFEQKYQ 262
|
Length = 286 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 47/213 (22%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFA 962
L+D++ G L A+VG G+GK++L+ L G K GS+S+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVSVPG--------- 66
Query: 963 RISGYCEQNDIHSP---NVTIYESLLYSAWLRLPKDM-FVEEVMELVEMKALRNSLVGLP 1018
I+ Y Q P N TI E++L+ P D E+V++ AL L LP
Sbjct: 67 SIA-YVSQ----EPWIQNGTIRENILFGK----PFDEERYEKVIKAC---ALEPDLEILP 114
Query: 1019 GVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRTVR 1066
DG TE Q++R+++A + ++ I +D+P S +DA I +
Sbjct: 115 --DGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL 172
Query: 1067 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+ +T + HQ + + D++ ++ G
Sbjct: 173 GLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 57/237 (24%), Positives = 90/237 (37%), Gaps = 59/237 (24%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISG---- 953
E + ++L+ V+ + G + A++G +G+GK+TL + G Y EG I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 954 -----------------YPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDM 996
YP I G VT + L + R
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTNSDFLRAAMNARRGARG 114
Query: 997 FVEEVMELVEMKALRNSLVGLP------GVD-GLSTEQRKRLTIAVELVANPSIIFMDEP 1049
+ E ++ ++ KA L+GL V+ G S ++KR I L+ P + +DEP
Sbjct: 115 ILPEFIKELKEKA---ELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 1050 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
SGLD A IV + + GR V+ H + + HV+Y G
Sbjct: 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDK-----VHVLYDG 221
|
Length = 251 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/269 (20%), Positives = 97/269 (36%), Gaps = 77/269 (28%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTE 242
L D+S + +T L+GP G GK+TLL+ L+ +D G V G ++ +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 243 -------------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSR 289
V Q+ + ++ + + G+
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPF---------PGSIYDNVA-----YGL------------ 105
Query: 290 REKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR----GI 345
+ GIK E+D ++ L+ L R G+
Sbjct: 106 --RLHGIKLKEELDERVEE--------------ALRKAALW-------DEVKDRLHALGL 142
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII---SL 402
SGGQ++R+ L + L +DE ++ LD +T +I + ++ + T++I ++
Sbjct: 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNM 200
Query: 403 LQPAPETYDLFDDIILLSEGEIVYQGPRE 431
Q A + D L G +V GP E
Sbjct: 201 QQAA----RVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 65/266 (24%), Positives = 105/266 (39%), Gaps = 45/266 (16%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
K EIL V+ VK + ++GP GSGK+TL + G + G + + G ++ E
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDGEDILELS 74
Query: 245 P-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
P +R A I + + ++ GV L A ++ R GI PE
Sbjct: 75 PDERARAGIF--------LAFQYPVEIP----GVTNSDFLRAAMNARRGARGI--LPEFI 120
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
+K ++LGLD + + + G SGG+KKR ++L+
Sbjct: 121 KELKE--------------KAELLGLD---EEFLERYVNEGFSGGEKKRNEILQLLLLEP 163
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII-----L 418
K +DE +GLD + + + +II+ Q L D I +
Sbjct: 164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ------RLLDYIKPDKVHV 217
Query: 419 LSEGEIVYQGPREYVLDFFESVGFRC 444
L +G IV G E + + E G+
Sbjct: 218 LYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 68/254 (26%), Positives = 99/254 (38%), Gaps = 59/254 (23%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
IL VS V +T +LG G GKTTLL+ L G SG + G ++T+ P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 247 ----RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
AY+ Q +TV E L G LA L RR + K EI
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLL-------TG-----LAALPRRSR----KIPDEI 114
Query: 303 -DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM--RRG--ISGGQKKRVTTGE 357
+ F VLK EM RRG +SGGQ++++
Sbjct: 115 YELFP----------------VLK--------------EMLGRRGGDLSGGQQQQLAIAR 144
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
LV K L +DE + G+ S I R +R++ + +++ Q +L D
Sbjct: 145 ALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV-EQYLDFARELADRYY 203
Query: 418 LLSEGEIVYQGPRE 431
++ G +V G +
Sbjct: 204 VMERGRVVASGAGD 217
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 20/228 (8%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGYIEGSISISGYPKKQET 960
+L+ VS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----P 69
Query: 961 FARIS---GYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFV-EEVMELVE-MKALRNSLV 1015
R Y Q P +T+ E+LL + + +E+ EL +K +
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRG 129
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
G LS Q+++L IA LV P ++ +DEPT G+ + R +R G
Sbjct: 130 GD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184
Query: 1076 VCTIHQPSIDI-FEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAV 1122
+ + Q +D E D ++M+RG V+ +G V + AV
Sbjct: 185 ILLVEQ-YLDFARELADRYYVMERGR-VVASGAGDELDEDKVRRYLAV 230
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 19/212 (8%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE 959
+ ++L+ VS + G + A+VG SG+GK+TL+ +L G G + +G +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKL 72
Query: 960 TFARIS-------GYCEQNDIHSPNVTIYESLLYSAWL-RLPKDMFVEEVMELVEMKALR 1011
+ + G+ Q P+ T E++ + + E E++E L
Sbjct: 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE 132
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRNT 1068
+ + P LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 133 HRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190
Query: 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100
++T VV H ++ + D + MK G
Sbjct: 191 LNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 71/269 (26%), Positives = 108/269 (40%), Gaps = 43/269 (15%)
Query: 889 MPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGS 948
++ +E +L V + R G L LVG +GAGKTTL+ + G T G+
Sbjct: 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGT 59
Query: 949 ISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDM------------ 996
+ ++G + + S + P T SL + +R +M
Sbjct: 60 VLVAGDDVEALSARAAS----RRVASVPQDT---SLSFEFDVRQVVEMGRTPHRSRFDTW 112
Query: 997 ------FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050
VE ME + + V LS +R+R+ +A L ++ +DEPT
Sbjct: 113 TETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPT 167
Query: 1051 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRGGHVIYAGPLG 1109
+ LD + VR VD G+T V IH +D+ + DEL L+ G V AGP
Sbjct: 168 ASLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR-VRAAGPPA 224
Query: 1110 R--QSHKLVEYFEAVPGVPKIRDGYNPAT 1136
+ L F+A V G +PAT
Sbjct: 225 DVLTADTLRAAFDARTAV-----GTDPAT 248
|
Length = 402 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 31/207 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L+D++ G L ++G SG GKTTL++++AG Y GSI++ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDG-- 1022
G QN+ P + +++ + L + K +E +++ VGL G +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML-------KKVGLEGAEKRY 125
Query: 1023 ---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTV 1075
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+ V
Sbjct: 126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQV 182
Query: 1076 VCTIHQPSIDIFEAF---DELFLMKRG 1099
+ H DI EA EL L+ G
Sbjct: 183 LLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGYIEGSISISG---YPKK 957
Q +++V+ + G + AL+G SG GKTT + + + G + G I + G Y +
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 958 QETFA--RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV 1015
+ A R G Q P ++++++++ A L+L + +ME+ E ++LR + +
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAE-RSLRGAAL 134
Query: 1016 --------GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTV 1065
P GLS Q++RL IA L P I+ MDEPTS LD + A + + T
Sbjct: 135 WDEVKDRLKTPAT-GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193
Query: 1066 RNTVDTGRTVVCTIHQPS 1083
V T V +HQ +
Sbjct: 194 LKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 37/198 (18%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETF 961
+LQDVS PG +TALVG SG+GK+T++ +L + G G + + G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG----GQVLLDGKP------ 77
Query: 962 ARISGYCEQNDIHSPNVTI-YESLLYSAWLR------LPKDMFVEEVMELVEMKALRNSL 1014
IS Y E +HS + E +L++ L+ L F E V E + + +
Sbjct: 78 --ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF-ECVKEAAQKAHAHSFI 133
Query: 1015 VGLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
L G TE Q++R+ IA L+ NP ++ +DE TS LDA + V +
Sbjct: 134 SELA--SGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191
Query: 1064 TVRNTVDTGRTVVCTIHQ 1081
+ + RTV+ H+
Sbjct: 192 ALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-10
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFA 962
L+ +S A + G ++G SG+GK+TL +L G GS+ + G +Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLG 409
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP---- 1018
R GY Q D+ + TI E++ R ++ E+V+E + + ++ LP
Sbjct: 410 RHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEKVIEAARLAGVHELILRLPQGYD 463
Query: 1019 ---GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
G G LS QR+R+ +A L +P ++ +DEP S LD+ A + + G
Sbjct: 464 TRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGG 523
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRG 1099
TVV H+PS + D++ +++ G
Sbjct: 524 TVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 45/179 (25%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISGYPK 956
Q L+ ++ +TAL+G SG GK+T + D++ K IEG + + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG--- 69
Query: 957 KQETFARISGYCEQNDI-----------HSPN---VTIYESLLYSAWLRLPKDMFVEEVM 1002
Q+ Y D+ PN ++IY+++ Y KD +++
Sbjct: 70 -QDI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDK--KKLD 120
Query: 1003 ELVEMKALRNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
E+VE K+L+ + + D GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 121 EIVE-KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 58/252 (23%), Positives = 92/252 (36%), Gaps = 61/252 (24%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240
S K+ EIL D+S + + L G G+GKTTL + L+G +S SG + G +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 241 TEFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
+++ Y+ Q D +VRE L
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLG----------------------LKELDA 102
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
A + VLK L L + +SGGQK+R+ L
Sbjct: 103 GNEQA----------------ETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAAL 141
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-F----- 413
+ L DE ++GLD ++ +R++ ++I T+D F
Sbjct: 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVI--------THDYEFLAKVC 193
Query: 414 DDIILLSEGEIV 425
D ++LL+ G IV
Sbjct: 194 DRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-10
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 41/184 (22%)
Query: 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937
L F++V+ G + RL LL+D+S G A+VG +GAGK+TL+ +LA
Sbjct: 322 LEFENVSK-----------GYDGGRL-LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369
Query: 938 GRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDM 996
G G + G++ + G K F ++++ P+ T+ E L D
Sbjct: 370 G--ELGPLSGTVKV-GETVKIGYFD-----QHRDEL-DPDKTVLE------ELSEGFPDG 414
Query: 997 FVEEVMELVEMKALRNSLVGLPG------VDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050
+EV + G G V LS ++ RL +A L+ P+++ +DEPT
Sbjct: 415 DEQEVRAYLGR-------FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467
Query: 1051 SGLD 1054
+ LD
Sbjct: 468 NHLD 471
|
Length = 530 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 4e-10
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 20/190 (10%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG----YPKKQ 958
++L+ +S + G + ++G SG+GK+TL+ L G + GSI++ G K
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDI 72
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYS--AWLRLPKDMFVEEVMELVEMKALRNSLVG 1016
R G Q P++T+ E++ + +L K E+ +EL+E VG
Sbjct: 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEK-------VG 125
Query: 1017 LPGV-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
L LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 1072 GRTVVCTIHQ 1081
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 48/260 (18%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
IL D+S +K + T ++G GSGK+TL + L G SG + G L +
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKD---- 540
Query: 247 RTCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
I +H L +E FSG L LL G K + D
Sbjct: 541 -----IDRHTLRQFINYLPQEPYIFSGSILE-----NLLL---------GAKENVSQDEI 581
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
A ++ +K + + + L ++ ISGGQK+R+ L+ +K
Sbjct: 582 WAACEIAEIKDDI------ENMPLGYQTELSEEGS---SISGGQKQRIALARALLTDSKV 632
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII--SLLQPAPETYDLFDDIILLSEGE 423
L +DE ++ LD+ T +IV ++++ D T+I L A ++ D II+L G+
Sbjct: 633 LILDESTSNLDTITEKKIV---NNLLNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGK 685
Query: 424 IVYQGPREYVLD---FFESV 440
I+ QG + +LD F+ S+
Sbjct: 686 IIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 63/246 (25%), Positives = 107/246 (43%), Gaps = 31/246 (12%)
Query: 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDV 935
+S+ F++V+Y M+ +G L ++S G ALVG +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 936 LAGRKTGGYIEGSISISGYPKKQET-------FARISGYCEQNDIHSPNVTIYESLLYSA 988
G+I+I+GY ET + Q P ++E+ +
Sbjct: 53 FNALLKPS--SGTITIAGYHITPETGNKNLKKLRKKVSLVFQ----FPEAQLFENTVLKD 106
Query: 989 WLRLPKDM-FVEEVMELVEMKALRNSLVGLP------GVDGLSTEQRKRLTIAVELVANP 1041
PK+ F E+ + +K L+ VGL LS Q +R+ IA + P
Sbjct: 107 VEFGPKNFGFSEDEAKEKALKWLKK--VGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP 164
Query: 1042 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101
I+ +DEP +GLD +M+ ++ G TV+ H D+ E D++ +++ G
Sbjct: 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKL 223
Query: 1102 VIYAGP 1107
+ +A P
Sbjct: 224 IKHASP 229
|
Length = 287 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 30/198 (15%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY------ 954
++ L+DVS + G + ++G SGAGK+TL+ + G + GS+ + G
Sbjct: 16 GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLS 73
Query: 955 PKKQETFARISGYCEQ--NDIHSPNVTIYESLLYSAWL-RLPKDMFVEEVMELVEMKALR 1011
K+ R G Q N + S T++E++ + +PK E V+EL+E
Sbjct: 74 GKELRKARRRIGMIFQHFNLLSSR--TVFENVALPLEIAGVPKAEIEERVLELLE----- 126
Query: 1012 NSLVGL-------PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
LVGL P LS Q++R+ IA L NP ++ DE TS LD ++
Sbjct: 127 --LVGLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182
Query: 1065 VRNT-VDTGRTVVCTIHQ 1081
+R+ + G T+V H+
Sbjct: 183 LRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 56/257 (21%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
F K+ ++ + VS VKP +T LLGP G+GKTT L+ L+G + +G T G
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGF 67
Query: 239 ELTE--FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
++ + +R ++S + +T RE L++ G L E A +
Sbjct: 68 DVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG----------LKGDELTARL 117
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
+ + LG++ D VG G S G +++V
Sbjct: 118 ------------------------EELADRLGMEELLDRRVG-----GFSTGMRQKVAIA 148
Query: 357 EMLVGPAKALFMDEISTGLD---SSTTFQIVRFMRQMVHITDVTMIIS--LLQPAPETYD 411
LV L +DE +TGLD + + +R +R + ++ S ++Q E
Sbjct: 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK----CILFSTHIMQ---EVER 201
Query: 412 LFDDIILLSEGEIVYQG 428
L D +++L G +VY+G
Sbjct: 202 LCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-10
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 26/175 (14%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS-----GYPKKQE 959
LL++VS PG LVG +GAGK+TL+ +LAG G ++ GY QE
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKGLRVGYL-SQE 74
Query: 960 TFA---------RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKA- 1009
I G+ E ++ + Y L L + + E ++ ++A
Sbjct: 75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134
Query: 1010 LRNSLVGLPGVDGLSTE-------QRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057
+L+GL G R+R+ +A L+ P ++ +DEPT+ LD +
Sbjct: 135 AEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-10
Identities = 57/206 (27%), Positives = 81/206 (39%), Gaps = 41/206 (19%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG---HELTEF 243
+L VS + P +LGP GSGK+TLL L+G D G VT G L +
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQD 405
Query: 244 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
+R + +Q D H + TVRE L R T EL A L R G+
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRL-AR--PDATDEELWAALER----VGLADWL--- 454
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
GL T LG E +SGG+++R+ L+ A
Sbjct: 455 ----RALPDGLDTVLG--------------------EGGARLSGGERQRLALARALLADA 490
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQ 389
L +DE + LD+ T +++ +
Sbjct: 491 PILLLDEPTEHLDAETADELLEDLLA 516
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 58.9 bits (144), Expect = 8e-10
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
+L DVS +KP ++GP GSGK+TLL+ L D + SG + G +L + +
Sbjct: 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLE 72
Query: 247 ---RTCAYISQHD-LHHGEMTVRETLDFSG 272
+ AY+ Q L G T+RE + SG
Sbjct: 73 SLRKNIAYVPQDPFLFSG--TIRENI-LSG 99
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 9e-10
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 31/164 (18%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI---EGSISISGYPKKQETFA 962
L +VS + G + +G +GAGK+T M ++ G Y+ GS+ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 963 --RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMF----------VEEVMELVEMKAL 1010
R GY + H+P +Y + +L+ ++ VEE++ELV ++
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 1011 RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
++ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-09
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 41/204 (20%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP--- 245
L VS V P L+GP G+GK+TLL L G D + G + G L +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 246 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
+ A++ QH T+ E + + + AE+ + AG+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRLA---RPDASD----AEIREALERAGLDE------- 439
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
A GL T +G E G+SGGQ +R+ + A
Sbjct: 440 FVAALPQGLDTPIG--------------------EGGAGLSGGQAQRLALARAFLRDAPL 479
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQ 389
L +DE + LD+ T +++ +R
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRA 503
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-09
Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 42/243 (17%)
Query: 879 AFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938
FD V++ D QG+E DVS +PG A+VG +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVE--------DVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 939 RKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLY----SAWLRLPK 994
++ G I I G I + + V ++ L+ +R+ +
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 995 -DMFVEEVME---------LVEMKALR-NSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043
D EE+ +E K +++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1044 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103
+ +DE TS LD A V + + + GRT H+ S + A D + + G V+
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDN-GRVV 548
Query: 1104 YAG 1106
+G
Sbjct: 549 ESG 551
|
Length = 588 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 17/189 (8%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQE 959
+L+ + + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNIN 72
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLYS-AWLR-LPKDMFVEEVMELVEMKALRNSLVGL 1017
+ G Q P++T+ E++ + ++ + K E +EL+E VGL
Sbjct: 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLE-------KVGL 125
Query: 1018 PGV-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1072
LS Q++R+ IA L NP ++ DEPTS LD V+ +++ + G
Sbjct: 126 ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 185
Query: 1073 RTVVCTIHQ 1081
T+V H+
Sbjct: 186 MTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 65/229 (28%), Positives = 101/229 (44%), Gaps = 29/229 (12%)
Query: 892 EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI 951
M G + L+ V+ PG + AL+G +GAGK+TLM VL+G +G+I+I
Sbjct: 7 SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITI 64
Query: 952 SG--YPKKQETFARISG----YCEQNDIHSPNVTIYESLLYSAWLRLP-KDMFVEEVMEL 1004
+ Y K A G Y E + I +T+ E+L R K + +++
Sbjct: 65 NNINYNKLDHKLAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDW 119
Query: 1005 VEMKALRNSL---VGL-----PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
EM+ + VGL V LS ++ L IA L+ + +I MDEPTS L +
Sbjct: 120 REMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK 179
Query: 1057 AAA---IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102
++M +R G +V H+ + +I D +MK G V
Sbjct: 180 EVDYLFLIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 41/191 (21%), Positives = 63/191 (32%), Gaps = 47/191 (24%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF--VP 245
+ D+S + + GP G+GKTTLL+ L+G +G V + G +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73
Query: 246 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
+ Y+ E+T E L F
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHF----------------------------------- 98
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
G + L +GL D+ VG +S GQ++RV + + PA
Sbjct: 99 --WQRFHGSGNAATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPL 151
Query: 366 LFMDEISTGLD 376
+DE T LD
Sbjct: 152 WILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 65/277 (23%), Positives = 109/277 (39%), Gaps = 76/277 (27%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
F K+ L DVS V + ++G G+GK+TL++ ++G + SG V G
Sbjct: 11 FGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGT 67
Query: 239 ELTEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRRE- 291
+LT +R I QH F LL+ + E
Sbjct: 68 DLTLLSGKELRKARRRIGMIFQH-------------------------FNLLSSRTVFEN 102
Query: 292 -----KDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346
+ AG+ P EI+ + + L+++GL+ AD +S
Sbjct: 103 VALPLEIAGV-PKAEIEE--RVLEL------------LELVGLEDKADAYPAQ-----LS 142
Query: 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406
GGQK+RV L K L DE ++ LD TT I+ +R + +T+++
Sbjct: 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI----- 197
Query: 407 PETY------DLFDDIILLSEGEIVYQGPREYVLDFF 437
T+ + D + ++ +GE+V +G V + F
Sbjct: 198 --THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 25/151 (16%)
Query: 915 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY-----------PKKQETFAR 963
G+ TAL G SG+GKT+L++++AG EG I ++G P ++ R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKR---R 77
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGL 1023
I GY Q+ P+ T+ +L Y W + +LV + + + L PG L
Sbjct: 78 I-GYVFQDARLFPHYTVRGNLRYGMW-----KSMRAQFDQLVALLGIEHLLDRYPGT--L 129
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
S +++R+ I L+ P ++ MDEP + LD
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 38/214 (17%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
+L++VS + G +VG +GAGK+TL +LA + EG I I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG---------- 69
Query: 964 ISGYCEQNDIHSPNVTIYESL--------LYSAWLRLPKDMFVEEVMELVEMKALRNSLV 1015
+ P + SL L+S +R D F E E + ALR S
Sbjct: 70 ------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEI-YGALRVS-- 120
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R T T+
Sbjct: 121 --EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTI 177
Query: 1076 VCTIH--QPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ H + ID +D++ +M G Y P
Sbjct: 178 LTIAHRLRTIID----YDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 29/190 (15%)
Query: 915 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYI---EGSISISGYPKKQETFARISGYCEQN 971
G L L+G +GAGKTTL+ R G I +G++ ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 972 DIHSPN--VTIYESLLYS-----AWLRLP-KDMF--VEEVMELVEMKALRNSLVGLPGVD 1021
+ + +++ +++ WLR P F V + + V + L + VG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG----- 112
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++ T H
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH- 171
Query: 1082 PSIDIFEAFD 1091
D+ +A
Sbjct: 172 ---DLAQAMA 178
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 61/270 (22%)
Query: 170 EGVLGFLR-LFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDK 225
G++G L+ LF K R++E L +S ++ + +GP G+GKTT L+ LSG +
Sbjct: 17 PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG 76
Query: 226 SLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLA 285
+RV+G V + +R ++ + + G+ + L + L V F LLA
Sbjct: 77 EVRVAGLVPW----------KRRKKFLRRIGVVFGQ---KTQLWWD---LPVIDSFYLLA 120
Query: 286 ELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345
+ K E+ + + L T + R +
Sbjct: 121 AIYDLPPARFKKRLDELSELLDLEEL--LDTPV------------------------RQL 154
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQP 405
S GQ+ R L+ + LF+DE + GLD I F+++ T++++
Sbjct: 155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT---- 210
Query: 406 APETYDLFDDI-------ILLSEGEIVYQG 428
++ + DI +++ +G ++Y G
Sbjct: 211 ---SHYM-KDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 49/253 (19%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR-VSGRVTYCGHELTEFVPQ 246
IL+D+S + ++T L+GP G GK+TLL+ + + L SG V ++ +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA----RLLTPQSGTVFLGDKPISMLSSR 72
Query: 247 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
R A + QH L +TVRE + + GR L LS + ++
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY-GR----SPWLSLWGRLSAEDNAR-------VN 120
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
M+ T ++ L TD +SGGQ++R +L
Sbjct: 121 QAMEQTRINHLADRRLTD-----------------------LSGGQRQRAFLAMVLAQDT 157
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHI--TDVTMIISLLQPAPETYDLFDDIILLSE 421
+ +DE +T LD + +++R MR++ T VT++ L Q + Y D +++L+
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQAS--RY--CDHLVVLAN 213
Query: 422 GEIVYQGPREYVL 434
G ++ QG E V+
Sbjct: 214 GHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 29/192 (15%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
+ L+ +S + G TAL+G +GAGK+TL+ L G G + + G E
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKW 76
Query: 964 IS---GYCEQNDIHSPNVTIYESLLYSAW---------LRLPKDMF---VEEVMELVEMK 1008
+ G Q+ P+ ++ S + W + L KD VEE ++ V M
Sbjct: 77 VRSKVGLVFQD----PDDQVFSS---TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW 129
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
R+ LS Q+KR+ IA L +P +I +DEP + LD R +M +
Sbjct: 130 DFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184
Query: 1069 VDTGRTVVCTIH 1080
+ G+TV+ H
Sbjct: 185 HNQGKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L +S PG ALVG SG+GK+TL++++ + G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 966 GYCEQ--NDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP----- 1018
D+ N TI ++ Y + E+ + ++ + LP
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 1019 --GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T 1071
G +G LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQ 517
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
GRT + H+ S E D + +M G
Sbjct: 518 GRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-09
Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 47/253 (18%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+P ++ K L + + + +LG GSGK+TLLQ L+G D G +T G
Sbjct: 346 YPGQQTK--ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGV 400
Query: 239 ELTEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
E+ Q T + ++Q +H T+R+ L LA DA
Sbjct: 401 EIASLDEQALRETISVLTQ-RVHLFSGTLRDNL--------------RLAN-----PDAS 440
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
D E+ A ++ + L S + E R +SGG+++R+
Sbjct: 441 ---DEELWAALQQVGLEKLLESAPDGLNTWL------------GEGGRRLSGGERRRLAL 485
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415
L+ A +DE + GLD T Q++ + + + M+ L+ + D
Sbjct: 486 ARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL----ERMDR 541
Query: 416 IILLSEGEIVYQG 428
II+L G+I+ +G
Sbjct: 542 IIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 24/225 (10%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+DVS + G A+VG +G+GK+TL +L G G+I++ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 964 IS---GYCEQN-DIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLP 1018
+ G QN D T+ + + + +P++ VE V + + + + L P
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP 138
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVVC 1077
LS Q++R+ IA L P II +DE TS LD R V+ TVR + TV+
Sbjct: 139 H--RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLS 196
Query: 1078 TIHQPSIDIFEAF--DELFLMKRGGHVIYAGP---LGRQSHKLVE 1117
H D+ EA D + +M G ++ G + + H L E
Sbjct: 197 ITH----DLDEAAQADRVIVM-NKGEILEEGTPEEIFKSGHMLQE 236
|
Length = 279 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 41/202 (20%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ 958
E Q+L+++S + G AL+G SG+GK+TL+ +L G +G I++ G P
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP--- 65
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP 1018
V+ E L S L + ++ + LRN+L G
Sbjct: 66 -------------------VSDLEKALSSLISVLNQRPYLFDT-------TLRNNL-GRR 98
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV-C 1077
S +R+RL +A L+ + I+ +DEPT GLD ++ + V +T++
Sbjct: 99 ----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWI 153
Query: 1078 TIHQPSIDIFEAFDELFLMKRG 1099
T H I E D++ ++ G
Sbjct: 154 THHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 43/248 (17%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL----TE 242
+IL D+S V P ++GP G+GKTTLL L+G+ S SG VT G T
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 243 FVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
F ++ +S H+ TVR+ + LS GI +
Sbjct: 102 FELRKRIGLVSSELHERFRVRETVRDVV------------------LSGFFASIGIYQED 143
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
+ A A A +L++LG AD G+ +S G+++RV LV
Sbjct: 144 -LTAEDLAAAQW----------LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALV 187
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420
+ L +DE + GLD Q++ + ++ ++ + A E F +LL
Sbjct: 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK 247
Query: 421 EGEIVYQG 428
EGE+V QG
Sbjct: 248 EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ET 960
+L+D+S F G + +VG SGAGK+TL+ ++ + EGSI I G K +
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVIDL 75
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
+I +Q H T+ +++ Y L+ K++ VE + +V + N V
Sbjct: 76 RRKIGMVFQQP--HLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGL----NKEYATRDV 129
Query: 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ- 246
L +VS +K + L+GP GSGK+TLL+A++G + SG + G ++ + +
Sbjct: 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEE 70
Query: 247 --RTCAYISQHDLHHGE 261
R Y+ Q L G+
Sbjct: 71 LRRRIGYVPQ--LSGGQ 85
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-09
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 51/264 (19%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
DVS + + G + AL+G +GAGK+TLM +L G + G I + G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE------VR 69
Query: 964 ISGYCEQND--------IHS-----PNVTIYE----SLLYSAWLRLPKDMFVEEVMELVE 1006
I D +H P +T+ E L S + + + EL E
Sbjct: 70 IKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE 126
Query: 1007 MKALRNSLVGLP-----GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
GLP V LS +++R+ I L ++ +DEPT+ L + A +
Sbjct: 127 -------RYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179
Query: 1062 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GHVIYAGPLGRQSHKLVE- 1117
+R G+T++ H+ ++ D + +++RG G V + L E
Sbjct: 180 FEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVDPVAETTEEE--LAEL 236
Query: 1118 YFEAVPGVPKIRDGYNPATWVLEV 1141
+ ++ P VLEV
Sbjct: 237 MVGREVVLRVVKPPSTPGEVVLEV 260
|
Length = 501 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 29/176 (16%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGYIEGSISISGYP 955
+ L++++ +TAL+G SG GK+TL+ D++ G R G + I
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 956 KKQETFARISGYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN 1012
R G Q PN ++IY+++ Y RL +E+ E+VE ++L+
Sbjct: 75 IDVVELRRRVGMVFQK----PNPFPMSIYDNIAYG--PRLHGIKDKKELDEIVE-ESLKK 127
Query: 1013 SLVGLP---------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059
L GLS Q++RL IA L P ++ +DEPTS LD A
Sbjct: 128 --AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 6e-09
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 21/204 (10%)
Query: 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR--ISGYCE 969
F G +TA+VG SG+GK+TL++++AG +T G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 970 QNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVG----LPGVDGLST 1025
+N++ ++T+ +++ P E + +E+ R L G LPG LS
Sbjct: 78 ENNLF-AHLTVEQNV---GLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE--LSG 131
Query: 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRTVVCTIHQP 1082
+R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+ HQP
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLMVTHQP 189
Query: 1083 SIDIFEAFDELFLMKRGGHVIYAG 1106
D + + G + G
Sbjct: 190 E-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 7e-09
Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 82/275 (29%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-- 245
+ D+S +K LLGP G GKTTLL+ ++G S SG + G ++T+ VP
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPPE 75
Query: 246 QRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
+R + Q H MTV E + F L R+K
Sbjct: 76 KRPIGMVFQSYALFPH------MTVEENVAF---------------GLKVRKK----LKK 110
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG--ISGGQKKRVTTGE 357
EI A + L+++GL+ G R+ +SGGQ++RV
Sbjct: 111 AEIKA--RVEEA------------LELVGLE-------GFADRKPHQLSGGQQQRVALAR 149
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD------ 411
LV K L +DE + LD+ Q+ + ++++ +T + T+D
Sbjct: 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-------THDQEEALA 202
Query: 412 LFDDIILLSEGEI--------VYQGPR-EYVLDFF 437
+ D I ++++G I +Y+ P +V DF
Sbjct: 203 MSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 7e-09
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 49/246 (19%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-Q 246
+L D+S ++ + L+G G GKTTLL+A++G K+ ++GR+ +LT P +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLTHAPPHK 78
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
R A + Q+ + V + + F G+ + A+++ R DA
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAF-----GLRAQKMPKADIAERVADA------------ 121
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
LK D + +SGG ++R+ + L
Sbjct: 122 -------LKLVGLGDA---------------AAHLPAQLSGGMQQRIAIARAIAIEPDVL 159
Query: 367 FMDEISTGLDS----STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422
+DE + LD+ + +I ++ +T I+ + + L D ++ +G
Sbjct: 160 LLDEPLSALDANIRANMREEIAALHEELPELT----ILCVTHDQDDALTLADKAGIMKDG 215
Query: 423 EIVYQG 428
+ G
Sbjct: 216 RLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 7e-09
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 29/194 (14%)
Query: 887 VDMPAEMKSQGIE--ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLA 937
+ P +M+++G+ Q L D+S F +TAL+G SG GK+T + D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60
Query: 938 GRKTGGYIEGSISISG---YPKKQE--TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL 992
G + +EG I + G Y + R G Q P +I+E++ Y +
Sbjct: 61 GAR----VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNG 115
Query: 993 PKDMFVEEVMELVEMKALRNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIF 1045
KD + E VE ++LR++ + D GLS Q++RL IA L P ++
Sbjct: 116 VKDK--AYLAERVE-RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLL 172
Query: 1046 MDEPTSGLDARAAA 1059
MDEP S LD A
Sbjct: 173 MDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 7e-09
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 48/272 (17%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF-VP 245
++L+D+S + +M LLGP GSGKTTLL+ ++G ++ SG + + G +++
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHAR 72
Query: 246 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
R ++ QH MTV + + F L L RRE+ A
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNA--------AA 112
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
+KA +L+++ L A + +SGGQK+RV L +
Sbjct: 113 IKAKVTQ----------LLEMVQLAHLA-----DRYPAQLSGGQKQRVALARALAVEPQI 157
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425
L +DE LD+ ++ R++RQ+ T + + E ++ D ++++S+G I
Sbjct: 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNIE 216
Query: 426 YQGPREYVLDFFESVGFRCPERKGAADFLQEV 457
G + V +R P + +F+ EV
Sbjct: 217 QAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 31/224 (13%)
Query: 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR--ISGYCE 969
G + A++G SGAGK+TL++++AG +T G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 970 QNDIHSPNVTIYES--LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVG----LPGVDGL 1023
+N++ + ++T+ ++ L S L+L E E VE A + L G LPG L
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLN-----AEQREKVEAAAAQVGLAGFLKRLPGE--L 130
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVVCTI 1079
S QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLLMVT 187
Query: 1080 HQPSIDIFEAFDELFLMKRGGHVIYAGP----LGRQSHKLVEYF 1119
H P D D + + G + G L ++
Sbjct: 188 HHPE-DAARIADRVVFLDN-GRIAAQGSTQELLSGKASAAALLG 229
|
Length = 231 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 54/214 (25%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR-VSGRVTYCGHE------ 239
E+L ++ + + LLG G+GK+TLL L+G LR SG V G
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG----LLRPQSGAVLIDGEPLDYSRK 61
Query: 240 -LTEFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIK 297
L E ++ + Q D V + + F LG+ AE+ RR ++A
Sbjct: 62 GLLER--RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA--- 111
Query: 298 PDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
+ A SGL+ +SGG+KKRV
Sbjct: 112 --------LTAVGASGLRERP-----------------------THCLSGGEKKRVAIAG 140
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMV 391
+ L +DE + GLD + Q++ +R++
Sbjct: 141 AVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 9e-09
Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 49/258 (18%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEF--- 243
L D+S +K + LLGP G+GK+TLL+ ++G D +GR+ G L +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-----AGRIRLNGRVLFDVSNL 72
Query: 244 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
V R ++ QH MTV + + F G+ R E +E R +
Sbjct: 73 AVRDRKVGFVFQHYALFPHMTVADNIAF-----GLKVRKERPSEAEIRAR---------- 117
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
+ +L+++ L+ AD +SGGQ++RV L
Sbjct: 118 -----------------VEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVE 155
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422
K L +DE LD+ ++ R++R++ VT + E +L D +++L++G
Sbjct: 156 PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQG 214
Query: 423 EIVYQGPREYVLDFFESV 440
I GP + V D S
Sbjct: 215 RIEQVGPPDEVYDHPASR 232
|
Length = 345 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 56/277 (20%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGH 238
SK K L +VS V+ ++LGP GSGK+ LL+ ++G K D SG++ G
Sbjct: 7 SKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-----SGKILLNGK 61
Query: 239 ELTEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIK 297
++T P+ R +Y+ Q+ MTV + + + + ++ ++E + +
Sbjct: 62 DITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLK----------KRKVDKKEIERKVL 111
Query: 298 PDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
EI LG D++L N +SGG+++RV
Sbjct: 112 ---EIAEM------------LGIDHLL--------------NRKPETLSGGEQQRVAIAR 142
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
LV K L +DE + LD T ++ ++++ VT ++ + E + L D +
Sbjct: 143 ALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT-VLHVTHDFEEAWALADKVA 201
Query: 418 LLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFL 454
++ G+++ G E V F+ P+ + A+FL
Sbjct: 202 IMLNGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 9e-09
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 33/234 (14%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG-YPKK 957
+EN L L ++S F + ++G SG+GK+TL+ G Y G+I + Y
Sbjct: 35 QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGD 92
Query: 958 QETFARISGYCEQNDIHSPNVTIYESL--LYSAWLRLP-----KDMFVEEVM-------- 1002
++ + I + ++ L S + P KD +++M
Sbjct: 93 KKNNHELITNPYSKKIKN-----FKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGV 147
Query: 1003 ---ELVEMKALRNSLVGL--PGVD----GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053
E ++ + +GL ++ GLS Q++R+ IA L P I+ DEPT+GL
Sbjct: 148 KKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGL 207
Query: 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
D + +M+ + + +TV H + E DE+ +M +G + P
Sbjct: 208 DPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 340 EMRRGI------SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHI 393
E+RR I SGGQ++RV L+ L +DE ++GLD ++ +++ +R++
Sbjct: 70 ELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AE 128
Query: 394 TDVTMIISLLQPAPETYDLFDDIILLSEGE 423
T+II P D +I+L +G+
Sbjct: 129 EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 1e-08
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFV 244
+L D+S ++ + +LGP G+GK+TLL+ L+G K SG + G +L
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-----SGEILLDGKDLASLS 67
Query: 245 PQ---RTCAYISQ 254
P+ R AY+ Q
Sbjct: 68 PKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 66/237 (27%)
Query: 204 LLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTE----------FVPQRTCAY 251
LGP G+GKTT ++ L+ + SG G+++ VPQ
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT-----SGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78
Query: 252 ISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAM 311
++T RE L+ GR G L + E + +
Sbjct: 79 E--------DLTGRENLEMMGRLYG----------LPKDEAEERAEE------------- 107
Query: 312 SGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEI 371
+L++ L AD VG SGG ++R+ L+ LF+DE
Sbjct: 108 -----------LLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEP 151
Query: 372 STGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
+TGLD T I ++R + VT++++ E L D I ++ G I+ +G
Sbjct: 152 TTGLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 67/290 (23%), Positives = 116/290 (40%), Gaps = 66/290 (22%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG----KSDKSLRVSGRVTYCGHELTE 242
L ++ +K +T +LG G+GK+TL Q L+G S + L + Y L +
Sbjct: 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79
Query: 243 FVPQRTCAYISQHDLHH-GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
+ + + Q + +V + + F L + E+ +R
Sbjct: 80 L--RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-----EVRKR----------- 121
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
+D +K T + LK ++ +S GQKKRV +LV
Sbjct: 122 VDNALKRTGIEHLK-----------------------DKPTHCLSFGQKKRVAIAGVLVM 158
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL------FDD 415
K L +DE + GLD +I++ + +M +T+II+ T+D+ D+
Sbjct: 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDIDIVPLYCDN 211
Query: 416 IILLSEGEIVYQG-PREYVLD--FFESVGFRCPERKGAADFLQEVTSRKD 462
+ ++ EG ++ QG P+E + V R P R G L E+ KD
Sbjct: 212 VFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP-RIG---HLMEILKEKD 257
|
Length = 283 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 30/209 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFA 962
L +SG R G + LVG +GAGK+TL+ +AG +G GSI +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDG 1022
R Y Q + ++ L L P E + ++ AL + L G
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLT----LHQPDKTRTELLNDVAGALALDDKL-------G 120
Query: 1023 LSTE-------QRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVD 1070
ST QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ 180
Query: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
G +V + H + + A +L+KRG
Sbjct: 181 QGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY-IEGSISISG-----YPKKQ 958
LL +V+ G + L+G SG GK+TL+ + G G + G + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP 1018
R G Q+ + P++++ ++LL++ LP + R+ L G
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 1019 GVD--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055
D LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 899 EENRLQ--LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP- 955
+E +Q +L +VS + G + A+VG SG+GK+TL+ +L G T G + +G P
Sbjct: 16 QEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPM 73
Query: 956 ------KKQETFARISGYCEQNDIHSPNVTIYESLLYSAWL-RLPKDMFVEEVMELVEMK 1008
K E + G+ Q P+ T E++ + + +E++
Sbjct: 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV 133
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058
L + P LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 134 GLEHRANHRPS--ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 64/278 (23%), Positives = 107/278 (38%), Gaps = 59/278 (21%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
EIL V+ VK + ++GP GSGK+TL + ++G SG + + G +L E P
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPD 72
Query: 247 ---RTCAYIS-QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
R +++ Q+ ++ E L R L A RR + + +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFL-----------RSALNA---RRSA----RGEEPL 114
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
D + L +LG+D + + + G SGG+KKR +M +
Sbjct: 115 DLLDFLKLLKA---------KLALLGMD---EEFLNRSVNEGFSGGEKKRNEILQMALLE 162
Query: 363 AKALFMDEISTGLDSSTTFQIVRFM-------RQMVHITDVTMIISLLQPAPETYDLFDD 415
K +DEI +GLD + + R + IT +++ ++P D
Sbjct: 163 PKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP--------DY 214
Query: 416 IILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADF 453
+ +L +G IV G E + E KG
Sbjct: 215 VHVLLDGRIVKSGDVELAKEL---------EEKGYDWV 243
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 28/190 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L+++S + +PG +VG +G+GK++L +LA + GSI I G ++I
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGVD-----ISKIG 72
Query: 966 GYCEQNDIHSPNVTIY--ESLLYSAWLRL---PKDMFVEE----VMELVEMKALRNSLV- 1015
+D+ S ++I + +L+S +R P + +E +E V +K SL
Sbjct: 73 ----LHDLRS-RISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPG 127
Query: 1016 GLPGV-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070
GL V + LS QR+ L +A L+ I+ +DE T+ +D A++ +T+R
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR-EAF 186
Query: 1071 TGRTVVCTIH 1080
TV+ H
Sbjct: 187 KDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
Query: 920 ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS---GYCEQN---DI 973
A++G +GAGK+TL G GS+ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 974 HSPNVTIYESLLYSAW-LRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032
SP T+ + + + L L ++ V + M L +P LS ++KR+
Sbjct: 92 FSP--TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP--HHLSGGEKKRVA 147
Query: 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFD 1091
IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ + + E D
Sbjct: 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMAD 206
Query: 1092 ELFLMKRGGHVIYAGP 1107
+++M +G V Y
Sbjct: 207 YIYVMDKGRIVAYGTV 222
|
Length = 277 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 57/244 (23%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTE--FV 244
L +VS + R+ LGP G+GK+T ++ ++G D SG V CG ++ +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-----SGSVQVCGEDVLQNPKE 72
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
QR Y+ +H+ + +M VRE L F G
Sbjct: 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---------------------------- 104
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
M G + +++++GL +G +S G ++RV + L+ K
Sbjct: 105 ------MKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPK 153
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHI-TDVTMIIS--LLQPAPETYDLFDDIILLSE 421
L +DE +TGLD + Q+V + +I D T+I+S ++Q E + D +I++++
Sbjct: 154 VLILDEPTTGLDPN---QLVEIRNVIKNIGKDKTIILSTHIMQ---EVEAICDRVIIINK 207
Query: 422 GEIV 425
G+IV
Sbjct: 208 GKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 32/175 (18%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISG--- 953
Q L+ ++ +TAL+G SG GK+TL+ D++ G K I G +++ G
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDI 72
Query: 954 YPKKQETFARIS-GYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKA 1009
Y RI G Q PN ++IYE++ Y + KD ++V++ V ++
Sbjct: 73 YGNIDVADLRIKVGMVFQK----PNPFPMSIYENVAYGLRAQGIKD---KKVLDEVVERS 125
Query: 1010 LRNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057
LR + + D GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 126 LRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 5/198 (2%)
Query: 1212 NPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTS 1271
+ G LFG+ G ++ L + V+ + + +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1272 VVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMI---GFHWEVT 1328
A+ R + + S ++ F + Y+ + +++ L+L + G + +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1329 KFLWFYFFMLMCFMYFTLYGMMLVALTPNQ-QIATILMSFFLSFWNLFSGFMVPRTQIPI 1387
L +L+ + G++L +Q Q A+ + + + SG P +P
Sbjct: 168 -LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA 226
Query: 1388 WWRWYYWASPVAWTIYGL 1405
W + + +P+ + I L
Sbjct: 227 WLQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 66/266 (24%), Positives = 99/266 (37%), Gaps = 69/266 (25%)
Query: 892 EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI 951
EMK+ ++ L +VS R G + +L G +GAGK+TLM VL+G G EG I
Sbjct: 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66
Query: 952 SGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEE----------- 1000
G + + I E+ I I++ L L K++ V E
Sbjct: 67 EGEELQ---ASNIRD-TERAGI----AIIHQELA------LVKELSVLENIFLGNEITPG 112
Query: 1001 -VMELVEM----KALRNSL-----VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050
+M+ M + L L P V L Q++ + IA L ++ +DEPT
Sbjct: 113 GIMDYDAMYLRAQKLLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPT 171
Query: 1051 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110
+ L A+++ +R+ L G IY
Sbjct: 172 ASLTESETAVLLDIIRD---------------------------LKAHGIACIYI----- 199
Query: 1111 QSHKLVEYFEAVPGVPKIRDGYNPAT 1136
SHKL E + IRDG + T
Sbjct: 200 -SHKLNEVKAISDTICVIRDGRHIGT 224
|
Length = 506 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 44/223 (19%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
++L+ V+ + G + AL+G +G+GK+TL + G EG I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFV-----EEVMELVEMKALRNSLVGLP 1018
DI ++ E R +F+ E+ + LR V
Sbjct: 64 -------EDI--TDLPPEE--------RARLGIFLAFQYPPEIPGVKNADFLRY--VN-- 102
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
+G S ++KR I L+ P + +DEP SGLD A +V + + G++V+
Sbjct: 103 --EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLII 160
Query: 1079 IHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEA 1121
H + + D + ++ G ++ +G +L E
Sbjct: 161 THYQRLLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 61/287 (21%), Positives = 108/287 (37%), Gaps = 63/287 (21%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT 241
+ L DVS + + ++G G+GK+TLL+ ++ + SG V G +LT
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLT 71
Query: 242 EFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
++ I QH TV E + F LA + + E
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE----------LAGVPKAEIKQ- 120
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
+ + L+++GL AD +SGGQK+RV
Sbjct: 121 -----------RVAEL------------LELVGLSDKADRYPAQ-----LSGGQKQRVAI 152
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQM---VHITDVTMIISLLQPAPETYDL 412
L K L DE ++ LD TT I+ ++ + + +T + +I ++ +
Sbjct: 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLT-IVLITHEME---VVKRI 208
Query: 413 FDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTS 459
D + +L +G +V +G V + F + P+ +F+ E
Sbjct: 209 CDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 25/174 (14%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGYIEGSISISGYP 955
L D++ + +TAL+G SG GK+TL+ D++ G R TG + +I
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 956 KKQETFARISGYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN 1012
R G Q PN +IYE++ Y + K+ + + +VE K+L+
Sbjct: 80 ADVVALRRKIGMVFQR----PNPFPKSIYENVAYGPRIHGEKNK--KTLDTIVE-KSLKG 132
Query: 1013 SLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059
+ + D LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 133 AALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 3e-08
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 35/235 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVL-------AGRKTGGYIEGSISISGYPKK- 957
+ D A G + ++G+SG+GK+T + +L AG+ +I+G + P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWL-RLPKDMFVEEVMELVEMKALRNSLVG 1016
+E + G Q P++TI ++ L P+ E+ +EL++ LVG
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLK-------LVG 118
Query: 1017 LPGV-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
L D LS ++R+ +A L A P I+ MDE S LD + ++ T
Sbjct: 119 LEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 1072 -GRTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP---LGRQSHKLVEYF 1119
+T+V H D+ EA D + +MK G V P L +++ VE F
Sbjct: 179 LQKTIVFITH----DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 921 LVGVSGAGKTTLMDVLAGRKT---GGYIEGSISISGYPKKQETFARISGYCEQNDIHSPN 977
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 978 VTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVE 1036
+T+ E++ + +R +P+ V+E + + L P LS Q++R+ +A
Sbjct: 57 MTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP--HQLSGGQQQRVALARA 114
Query: 1037 LVANPSIIFMDEPTSGLDAR 1056
LV P I+ +DEP S LD +
Sbjct: 115 LVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 42/185 (22%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISG--- 953
Q L DV +TA +G SG GK+T + D + G + + G I++ G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDI 88
Query: 954 YPKKQ---ETFARISGYCEQNDIHSPN---VTIYESLLYSAWLR-LPKDMFVEEVMELVE 1006
Y + E AR+ G Q PN +IYE++ Y + L + E+ E+VE
Sbjct: 89 YDPRLDVVELRARV-GMVFQK----PNPFPKSIYENVAYGPRIHGLARSK--AELDEIVE 141
Query: 1007 MKALRNSLVGL----------PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
+LR + GL PG GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 142 -TSLRKA--GLWEEVKDRLHEPGT-GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPI 197
Query: 1057 AAAIV 1061
A A V
Sbjct: 198 ATAKV 202
|
Length = 267 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 47/158 (29%), Positives = 60/158 (37%), Gaps = 52/158 (32%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
+ VS + + G LVG SG GK+TL ++ G T G I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT----SGEILFEG---------- 74
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDG- 1022
DI +L K+ E V+EL+E VGLP
Sbjct: 75 -------KDIT----------------KLSKEERRERVLELLEK-------VGLPEEFLY 104
Query: 1023 -----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055
LS QR+R+ IA L NP +I DEP S LD
Sbjct: 105 RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISG--- 953
Q L D+S +TA +G SG GK+TL+ D++ + IEG I + G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNI 94
Query: 954 YPKKQE--TFARISGYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMK 1008
Y KK + R G Q PN +IYE+++Y LRL + E VE +
Sbjct: 95 YDKKVDVAELRRRVGMVFQR----PNPFPKSIYENVVYG--LRLQGINNRRVLDEAVE-R 147
Query: 1009 ALRNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
+LR + + D GLS Q++RL IA + P ++ +DEPTS LD + +
Sbjct: 148 SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 17/227 (7%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG-------YPK 956
Q L D++ G L+G SGAGK++L+ VL + G+++I+G P
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPS 73
Query: 957 KQETFA--RISGYCEQNDIHSPNVTIYESLLYSAW--LRLPKDMFVEEVMELVEMKALRN 1012
+ R G Q P++T+ E+L+ + L L KD + +L++ L+
Sbjct: 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP 133
Query: 1013 SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1072
P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG
Sbjct: 134 YADRYP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG 191
Query: 1073 RTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYF 1119
T V H+ + A +++ GH++ G + E F
Sbjct: 192 ITQVIVTHEVEVARKTASRVVYMEN--GHIVEQGDASCFTEPQTEAF 236
|
Length = 242 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISG-- 953
L+ +S + A +G SG GK+T + D++ + +EG I I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 954 -YPKKQET--FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD-MFVEE-VMELVEMK 1008
Y K + + G Q P +I+E++ Y + KD F+ + V E ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGA 130
Query: 1009 AL----RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
AL ++ L LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 131 ALWDEVKDKLK--ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 61/249 (24%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF--V 244
+L D+S VK + LGP G+GKTT ++ + G SG +T+ G +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
+R A I + +T RE L R LG+ ID
Sbjct: 71 LRRIGALIEAPGF-YPNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
VL ++GL A V G S G K+R+ L+G
Sbjct: 110 ------------------VLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPD 146
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHI---TDVTMIIS--LLQPAPETYDLFDDIILL 419
L +DE + GLD ++ +R+++ +T++IS LL E + D I ++
Sbjct: 147 LLILDEPTNGLDP----DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRIGII 199
Query: 420 SEGEIVYQG 428
++G+++ +G
Sbjct: 200 NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 38/165 (23%)
Query: 922 VGVSGAGKTTLMDVLAGR--KTGGYIE-GSISISGYPKKQ--ETFARI-----SGYCEQN 971
+G +GAGK+TL++ +AG T G I + ++ + AR+ +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 972 DIHSPNVTIYESL-----------LYSAWLRLPKDMFVEEVMELVEMKALRNSL---VGL 1017
P +TI E+L L SA + F E + L L N L +GL
Sbjct: 95 ----PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL--GLGLENRLSDRIGL 148
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062
LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 149 -----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 60/263 (22%), Positives = 104/263 (39%), Gaps = 59/263 (22%)
Query: 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242
+L D+S + L+GP GSGK+TL+ + D SGR+ GH++ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRD 68
Query: 243 FVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
+ R +SQ + F+ T E +A +
Sbjct: 69 YTLASLRRQIGLVSQ-----------DVFLFN------DTVAENIAYGRPGATREEV--- 108
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI--SGGQKKRVTTGE 357
+A A A I+ L D ++G RG+ SGGQ++R+
Sbjct: 109 --EEAARAANAHE------------FIMELPEGYDTVIGE---RGVKLSGGQRQRIAIAR 151
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ-MVHITDVTMII----SLLQPAPETYDL 412
L+ L +DE ++ LD+ + + + + M + T T +I S ++ A
Sbjct: 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRT--TFVIAHRLSTIENA------ 203
Query: 413 FDDIILLSEGEIVYQGPREYVLD 435
D I++L +G+IV +G E +L
Sbjct: 204 -DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-08
Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 29/210 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L +V+ RP + AL+G +GAGK+TL+ L G +K GSI G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 964 ISGYCEQNDI---HSP-NVTIYESLLYSAWL-RLP-KDMFVEEVMELVEMKALRNSLVGL 1017
S +N I H N+ + S++ + WL R P K MFV++ + KA+ + L
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL--- 122
Query: 1018 PGVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
+D LS Q + + IA N I+ MDEPTS L + + +R
Sbjct: 123 -DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+ G +V H+ +IF+ DE+ +++ G
Sbjct: 182 ERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 7e-08
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 39/216 (18%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQET 960
+ +L+ ++ PG + ALVG SG+GK+T+ +L + TG G + + G P Q
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG----GQVLLDGVPLVQ-- 547
Query: 961 FARISGYCEQNDIHSPNVTI-YESLLYSAWLR---------LPKDMFVEEVME------L 1004
+ + +H + E +L+S +R P + + +
Sbjct: 548 -------YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+E ++ VG G LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 601 MEFPNGYDTEVGEKGSQ-LSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655
Query: 1065 VRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
++ + RTV+ H+ S E D++ ++K+G
Sbjct: 656 LQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQET 960
+++ DVS G + L+G +GAGKTT ++ G R G I I+ P +
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR- 76
Query: 961 FARIS-GYCEQNDIHSPNVTIYESLLYSAWLRLPKD--------MFVEEVMELVEMKALR 1011
AR+ GY Q +T+ ++++ A L + + ++ ++E + LR
Sbjct: 77 -ARLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHITHLR 133
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
+S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 134 DSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188
Query: 1072 GRTVVCTIH 1080
G V+ T H
Sbjct: 189 GIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 59/282 (20%), Positives = 105/282 (37%), Gaps = 59/282 (20%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDK-SLRVSGRVTYCGHELTEFV 244
IL V V + +LG GSGK+TLL+ + G + DK + + G E +
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID- 303
++ + Q +TV E + F L E ++ P+ I
Sbjct: 83 IRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPESLIRE 123
Query: 304 -AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
MK + GL+ + + +SGG +KRV +
Sbjct: 124 LVLMK-LELVGLRGA-------------------AADLYPSELSGGMRKRVALARAIALD 163
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422
+ LF+DE ++GLD + I +R++ +T+I+ + + D + +L++G
Sbjct: 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAVLADG 222
Query: 423 EIVYQGPRE--------YVLDFFESVGFRCPERKGAADFLQE 456
+++ +G E +V FF R G F
Sbjct: 223 KVIAEGTPEELLASDDPWVRQFFNG------IRDGPIPFRYP 258
|
Length = 263 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 9e-08
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 44/237 (18%)
Query: 898 IEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE---GSISIS 952
++ ++ + +VS + G + +VG SGAGKTTL ++AG T G + G +
Sbjct: 292 VDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVD 351
Query: 953 GYPKKQETFARISGYC----EQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMK 1008
+ R Y ++ D++ P+ T+ ++L + L LP EL MK
Sbjct: 352 MTKPGPDGRGRAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPD--------ELARMK 402
Query: 1009 AL-------------RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055
A+ L P D LS +R R+ +A L+ P I+ +DEPT +D
Sbjct: 403 AVITLKMVGFDEEKAEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD- 459
Query: 1056 RAAAIVMRTVRNTV-----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
I V +++ + +T + H + + D LM R G ++ G
Sbjct: 460 ---PITKVDVTHSILKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 60/270 (22%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+ K L++VS ++ ++G GSGK+TL + L+G S SG + G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGK 69
Query: 239 ELTEFVPQRTCA----YISQHDLH--HGEMTVRETLDFSGRCLGVGTRFELLAELSRREK 292
L + + Q + TV L R G+ + +AEL
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAEL----- 124
Query: 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKR 352
+D GL S + +SGGQ++R
Sbjct: 125 ---------LDQV-------GLPPSFLDRRPHE-------------------LSGGQRQR 149
Query: 353 VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI-----ISLLQPAP 407
+ L+ K L +DE ++ LD S QI+ + ++ +T + ++L+
Sbjct: 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV---- 205
Query: 408 ETYDLFDDIILLSEGEIVYQGPREYVLDFF 437
+ D I ++ G+IV GP E +L
Sbjct: 206 --EHMCDRIAVMDNGQIVEIGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 52/210 (24%), Positives = 80/210 (38%), Gaps = 49/210 (23%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+L IL V +VK ++GP GSGK+TLL L+G D S SG V
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEV----------- 67
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRFELLAELSRREK---DAGIKPDP 300
+ LH ++ R +G V F L+ L+ E ++ +
Sbjct: 68 ------RLLGQPLH--KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES 119
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR---RGISGGQKKRVTTGE 357
D+ A A+ L+ +GL G + +SGG+++RV
Sbjct: 120 SADSRAGAKAL------------LEAVGL--------GKRLTHYPAQLSGGEQQRVALAR 159
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFM 387
G LF DE + LD +T +I +
Sbjct: 160 AFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 22/197 (11%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG--------- 953
++L+ VS G + +++G SG+GK+T + + + GSI ++G
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDK 76
Query: 954 ----YPKKQETFARIS---GYCEQNDIHSPNVTIYESLLYSAW--LRLPKDMFVEEVMEL 1004
P + R+ G Q+ ++T+ E+++ + L + K +E +
Sbjct: 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKY 136
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+ + P LS Q++R+ IA L P ++ DEPTS LD V++
Sbjct: 137 LAKVGIAEKADAYPAH--LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKV 194
Query: 1065 VRNTVDTGRTVVCTIHQ 1081
+++ + GRT+V H+
Sbjct: 195 MQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 35/224 (15%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKK 957
+ L++VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITIS 74
Query: 958 QETFARIS---GYCEQN-DIHSPNVTIYESLLYSAWLRL--PKDM--FVEEVMELVEMKA 1009
+E I G QN D T+ + + + + PK M ++++ + V M+
Sbjct: 75 KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED 134
Query: 1010 L--RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRT 1064
+ LS Q++R+ IA L NP II DE TS LD + + M
Sbjct: 135 YLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187
Query: 1065 VRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGHVIYAG 1106
+R T +T++ H D+ EA D++ + G +I G
Sbjct: 188 LRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 30/182 (16%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISISGYPKKQETFA 962
Q L D++ +TAL+G SG GK+T + I+G + I G K +
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 963 RIS---GYCEQNDIHSPNV---TIYESLLYSAWL------RLPKDMFVEEVM------EL 1004
+ G Q PNV +IYE++ Y+ L + ++ V + + E
Sbjct: 76 ALRKNVGMVFQQ----PNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE 131
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
V+ K +N+L LS Q++RL IA L P ++ +DEPTS LD ++ ++
Sbjct: 132 VKDKLKQNAL-------ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL 184
Query: 1065 VR 1066
++
Sbjct: 185 LK 186
|
Length = 246 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 25/211 (11%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY---PKKQ 958
R +L +S G A+VG SGAGK+T++ +L GSI+I G Q
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQ 332
Query: 959 ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR------- 1011
++ R G Q D N TI ++ Y D EEV E +
Sbjct: 333 QSLRRAIGIVPQ-DTVLFNDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLP 386
Query: 1012 ---NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
++ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R
Sbjct: 387 EGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE- 444
Query: 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
V GRT + H+ S I +A DE+ ++ G
Sbjct: 445 VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP------ 955
R +L +VS + G L+G SG GK+TL +L G + +G++S G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 956 KKQETFARISGYCEQNDIHS--PNVTIYESLL--YSAWLRLPKDMFVEEVMELVEMKALR 1011
K++ F R Q+ + P +T+ + + L + + EL++M LR
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR 140
Query: 1012 NSLVG-LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 141 SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 42/246 (17%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L DV+ G TA +G +G+GK+T+M +L G +GS+ + I+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDD--------TLIT 72
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLRLPKD-MFVEEVMELV------------EMKALRN 1012
+ DI + L++ + P+ +F E V++ V E +AL
Sbjct: 73 STSKNKDIKQIRKKV--GLVF----QFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAR 126
Query: 1013 SLVGLPGVDG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
+ L G+ LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 127 EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT 186
Query: 1064 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVP 1123
+ +G T+V H D+ D ++++++G V+ P + + V++ E
Sbjct: 187 LFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKP--KDIFQDVDFLEEKQ 243
Query: 1124 -GVPKI 1128
GVPKI
Sbjct: 244 LGVPKI 249
|
Length = 280 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 7/171 (4%)
Query: 1239 EKTSKEQDLINLLGAMYSAVLFLGASNASSVTSV-VAIERT--VFYRERAAGMYSSLTYA 1295
E T + +LFL + + ++ + E+ + R +G+ S L Y
Sbjct: 82 EITPLFNPNSGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGV-SPLKYL 140
Query: 1296 FAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALT 1355
++ + + IQ ++ LLL+ G L L+ + + G +L +L
Sbjct: 141 LGKILGDLLVGLIQLLIILLLLF---GLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLF 197
Query: 1356 PNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLV 1406
N + A +++S + + F G + P +P + +W + P I GL+
Sbjct: 198 KNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLL 248
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 28/208 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L+DVS G T++VG +G+GK+T+ ++ G + G I + + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 966 ---GYCEQNDIHSPNVTIYESLLYSAWLRLP------KDM--FVEEVMELVEMKALRNSL 1014
G QN N + + Y L +M V E ++ V+M +
Sbjct: 83 KHIGIVFQN---PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY- 138
Query: 1015 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGR 1073
+ LS Q++R+ IA L NPS+I +DE TS LD A ++ VR +
Sbjct: 139 ----EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
Query: 1074 TVVCTIHQPSIDIFEAF--DELFLMKRG 1099
T++ H D+ EA D + +M +G
Sbjct: 195 TIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 60/275 (21%), Positives = 107/275 (38%), Gaps = 40/275 (14%)
Query: 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQ---ALSGKSDKSLRVSGRVTYCGHELTE 242
L +L ++ V L+GP GSGK+T+L+ L + ++V G Y
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY------- 65
Query: 243 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
+P R + + H +M R +G F+ + + P +
Sbjct: 66 HMPGRNGPLVPADEKHLRQM--RNK---------IGMVFQSFNLFPHKTVLDNVTEAPVL 114
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
M L L ++GL AD M +SGGQ++RV L
Sbjct: 115 VLGMARAEAEKRAMEL-----LDMVGLADKADHMPAQ-----LSGGQQQRVAIARALAMR 164
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422
K + DE+++ LD +++ +R++ D+TM++ + + D + +G
Sbjct: 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDKG 223
Query: 423 EIVYQGPREYVLDFFESVGFRCPERKGAADFLQEV 457
IV QG + + FR P+ + +FL +V
Sbjct: 224 RIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 45/238 (18%)
Query: 900 ENRLQ-LLQDVSGAFRPGVLTALVGVSGAGKTTL-------MDVLAGRKTGGYIEGSISI 951
EN L+ +L+ V +PG + G +G+GK++L +D+ G+ I+G I I
Sbjct: 30 ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDI 85
Query: 952 SGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL---PK----DMFVEEVMEL 1004
S P +R+S + + + +L+S +R P+ D + E +E+
Sbjct: 86 SKLPL-HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEI 132
Query: 1005 VEMKALRNSLVGLPGVDGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
++K + SL G G+D + TE QR+ +A V SI+ MDE T+ +D
Sbjct: 133 AQLKNMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190
Query: 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHK 1114
I+ + V T RTVV H+ S I +A D + ++ RG V P + +
Sbjct: 191 TENILQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRGILVECDTPENLLAQE 245
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 56/227 (24%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+ + L D+S V+ L+GP G GK+TLL+ ++G + SG V G
Sbjct: 10 YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGE 66
Query: 239 ELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
+T P Y+ Q D +TV + + GV + E
Sbjct: 67 PVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV----------PKAEARE---- 110
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR--RGISGGQKKRV--- 353
+A + L+++GL G E +SGG ++RV
Sbjct: 111 --------RAEEL------------LELVGLS-------GFENAYPHQLSGGMRQRVALA 143
Query: 354 -TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI 399
+ V P L +DE + LD+ T Q+ + + T T++
Sbjct: 144 RA---LAVDP-DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVL 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 61/236 (25%), Positives = 94/236 (39%), Gaps = 49/236 (20%)
Query: 204 LLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHG 260
LLGP G+GKTTLL+A+ G + +++V+G G +VPQR H+
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-------HEFAWD 63
Query: 261 -EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLG 319
++V T+ SGR +G RR P + F
Sbjct: 64 FPISVAHTV-MSGRTGHIG--------WLRR---------PCVADFA------------A 93
Query: 320 TDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSST 379
L+ +GL AD VG +SGGQ++RV L L +DE TGLD T
Sbjct: 94 VRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
Query: 380 TFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLD 435
+ ++ T I+ + D ++LL+ G ++ G + + D
Sbjct: 149 QELLTELFIELA--GAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 23/205 (11%)
Query: 889 MPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--Y 944
M E+K G ++L ++S + R G A+ G SG GK+TL+ ++A T G
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 945 IEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK---DMFVEEV 1001
EG +S K E + + YC Q + T+ ++L++ +R + +
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAAL--- 114
Query: 1002 MELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA--- 1058
+L+ AL +S++ + LS +++R+ + L P I+ +DE TS LD
Sbjct: 115 -DLLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
Query: 1059 -AIVMRTVRNTVDTGRTVVCTIHQP 1082
++ R VR + V+ H
Sbjct: 173 EEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 25/169 (14%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGYIEGSISISG---YPKK 957
Q L D++ +TAL+G SG GK+T + L + IEG + + G Y K
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 958 QETFA--RISGYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN 1012
+ + G Q PN ++IY+++ Y + KD +E+ ++VE AL+
Sbjct: 78 VDVVELRKRVGMVFQK----PNPFPMSIYDNVAYGPRIHGIKDK--KELDKIVEW-ALKK 130
Query: 1013 SLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+ + D LS Q++RL IA + P +I MDEPTS LD
Sbjct: 131 AALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (128), Expect = 2e-07
Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 55/246 (22%)
Query: 198 PSR-MTLLLGPPGSGKTTLLQALSGKSDK--SLRVSGRVTYCGHELTEFVPQRTCAYISQ 254
P+R +T L+GP GSGKTT L+ L+ +DK R SG V G + +
Sbjct: 45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY----------- 93
Query: 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP-------EIDAFMK 307
R+ L+F R VG F+ +P+P + A ++
Sbjct: 94 ----------RDVLEFRRR---VGMLFQ--------------RPNPFPMSIMDNVLAGVR 126
Query: 308 ATAMSGLKTSLGTDYV-LKILGL-DICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
A + K G L +GL D D + + R +SGGQ++ + L +
Sbjct: 127 AHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEV 184
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425
L +DE ++ LD +TT +I F+R + V ++ L A + D L +G +V
Sbjct: 185 LLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR---ISDRAALFFDGRLV 241
Query: 426 YQGPRE 431
+GP E
Sbjct: 242 EEGPTE 247
|
Length = 276 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 30/207 (14%)
Query: 898 IEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957
+E+ + L+ V+ + G + A++G +G+GK+TL +AG + G+I G
Sbjct: 10 VEDKEI--LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG---- 63
Query: 958 QETF-------ARISGYCE-QNDIHSPNVTIYESLLYSAWLRL------PKDMF-----V 998
Q+ AR + Q P V+ E L + R P D+ +
Sbjct: 64 QDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLL 123
Query: 999 EEVMELVEM-KALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057
+ + L+ M + N V +G S ++KR I + P + +DE SGLD A
Sbjct: 124 KAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 1058 AAIVMRTVRNTVDTGRTVVCTIHQPSI 1084
IV + + R+ + H +
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARI 964
LLQ +S G L L G +GAGKTTL+ ++AG +G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 965 SGYC---EQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD 1021
C ++ I +P +T+ E+ LY P + + E+ L ++ L + GL
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLYDIHFS-PGAVGITELCRLFSLEHLIDYPCGL---- 127
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
LS+ Q++++ + ++ + +DEP LD + ++ ++ G V+ T HQ
Sbjct: 128 -LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 46/206 (22%)
Query: 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI-- 973
G + L+G SG GKTT++ ++AG + EG I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 974 --HS----PNVTIYESLLYS-AWLRLPKDMFVEEVMELVEMKALRNSLVGLPG-----VD 1021
S P++++ E++ Y L +PK+ + V E +E LV L G VD
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE-------LVDLAGFEDRYVD 135
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTVV 1076
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T +
Sbjct: 136 QISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITSL 191
Query: 1077 CTIHQPSIDIFEAF---DELFLMKRG 1099
H S EAF D + +M +G
Sbjct: 192 YVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG-----YPKKQETFARISGYCEQ 970
G TA++G +G GK+TL+ L+ T G + + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 971 NDIHSPNVTIYESL---------LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD 1021
N ++T+ E + L++ W + ++ + M+A + + VD
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKA------MQATGITHLADQSVD 142
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 143 TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 25/190 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------- 958
L ++ RPG ALVG SGAGK+TL +L + G I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 959 ETFARI-------SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR 1011
A + + +N I + + +A F+ + E +
Sbjct: 414 ARMALVPQDPVLFAASVMEN-IRYGRPDATDEEVEAAARAAHAHEFISALPEGYD----- 467
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
+ +G GV LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+
Sbjct: 468 -TYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMK 524
Query: 1072 GRTVVCTIHQ 1081
GRT + H+
Sbjct: 525 GRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 60/274 (21%), Positives = 115/274 (41%), Gaps = 51/274 (18%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEFV 244
E LH +S + +T L+GP G GK+T L+ L+ +D ++++++G + + G +
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI---- 73
Query: 245 PQRTCAYISQHDL----HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
Y S+ DL M ++ F F + ++ K AG+K
Sbjct: 74 ------YGSKMDLVELRKEVGMVFQQPTPFP---------FSVYDNVAYGLKIAGVKDKE 118
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
ID ++ SL + K ++ + + SGGQ++R+ L
Sbjct: 119 LID--------QRVEESLKQAAIWKETKDNL-------DRNAQAFSGGQQQRICIARALA 163
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420
K + +DE ++ LD ++ +I + ++ H M+ LQ A + D L
Sbjct: 164 VRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR---ISDQTAFLM 220
Query: 421 EGEIVYQGPREYVLDFFESVGFRCPERKGAADFL 454
G+++ GP E + F P+++ +D+L
Sbjct: 221 NGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 4e-07
Identities = 67/272 (24%), Positives = 105/272 (38%), Gaps = 37/272 (13%)
Query: 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY-------CGH 238
E+L ++S ++ + +LG G+GK+ L+ L G D+ SGR+ Y CG+
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGY 71
Query: 239 -ELTEFV--PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
E V P C G E +DF + R + + A
Sbjct: 72 VERPSKVGEPCPVC----------GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL 121
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR-----RGISGGQK 350
D +D ++A G + + ++ MV R R +SGG+K
Sbjct: 122 YGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE-------MVQLSHRITHIARDLSGGEK 174
Query: 351 KRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETY 410
+RV L DE + LD T + + + V + ++M+++ PE
Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVI 232
Query: 411 -DLFDDIILLSEGEIVYQG-PREYVLDFFESV 440
DL D I L GEI +G P E V F E V
Sbjct: 233 EDLSDKAIWLENGEIKEEGTPDEVVAVFMEGV 264
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 36/219 (16%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKKQETFAR 963
L++++ G ALVG SG+GK+T+ ++L T Y EG I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 964 ISGYC---EQNDIHSPNVTIYESLLYSAWLRLPKDMFVEE----------VMELVE-MKA 1009
+ QN +H N TI ++ Y+ + + E M+ + M
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDN 468
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
++++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 469 GLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DEL 526
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFL------MKRGGHV 1102
RT + H+ S E DE+ + ++RG H
Sbjct: 527 QKNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHA 563
|
Length = 582 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 20/173 (11%)
Query: 915 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIH 974
G + G +GAGKTTL+ VLAG G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 975 SPNVTIYESLLYSAWL--RLPKDMFVEEVMELVEMKALRNSLVGLPG-----VDGLSTEQ 1027
+++ E+L + L R K M AL ++VGL G V LS Q
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQM---------PGSAL--AIVGLAGYEDTLVRQLSAGQ 142
Query: 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 28/169 (16%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTGGYIEGSISISGYPKK 957
++DVS F +TA++G SG GK+T++ + + R TG + I Y +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRG 77
Query: 958 QE--TFARISGYCEQNDIHSPNVTIYESLL--YSAWLRLPK---DMFVEEVMELV----E 1006
+ + R G Q P ++IY++++ Y R+ + D VE ++ V E
Sbjct: 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 1007 MK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+K L+++ + L G Q++RL IA + P +I MDEP S LD
Sbjct: 138 VKDRLKSNAMELSG------GQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 915 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE---GSISISGYPKKQETFARISGYCE 969
PG + ALVG +GAGK+T+M VL G + G I ++ +G QE A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 970 QNDIHS-----PNVTIYESLLY-----SAWLRLP-KDMFVEEVMELVEMKALRNS--LVG 1016
IH P +TI E++ + + R+ K M+ E L + +S LVG
Sbjct: 83 --IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG 140
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076
LS +++ + IA L +I MDEPT L + R +R GR +V
Sbjct: 141 -----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIV 195
Query: 1077 CTIHQPSIDIFEAFDELFLMKRG 1099
H+ +IFE D++ + + G
Sbjct: 196 YISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 5e-07
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 45/250 (18%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE-- 242
K +L D+S ++P ++GP GSGK+TL++ L D + SG + G ++ +
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDIS 397
Query: 243 -FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
++ +SQ D T+RE + +PD
Sbjct: 398 LDSLRKRIGIVSQ-DPLLFSGTIRENIALG-------------------------RPDAT 431
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
+ +A ++ I L D +VG E +SGGQ++R+ L+
Sbjct: 432 DEEIEEALKLANAH--------EFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLR 482
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421
L +DE ++ LD+ T I +++++ T+II+ T D II+L
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLKGR-TTLIIAHR---LSTIKNADRIIVLDN 538
Query: 422 GEIVYQGPRE 431
G IV +G E
Sbjct: 539 GRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 52/248 (20%), Positives = 97/248 (39%), Gaps = 46/248 (18%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTE-----FVPQRT 248
V+ + L+GP G GKTT L+A++ D + RV+GR+ G ++ +R
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 249 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKA 308
+ Q M+V + + + G+ R L+ R + A + E+ +K
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD--EVKDRLKT 144
Query: 309 TAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFM 368
A G+SGGQ++R+ L + L M
Sbjct: 145 PAT--------------------------------GLSGGQQQRLCIARALAVEPEILLM 172
Query: 369 DEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD-----LFDDIILLSEGE 423
DE ++ LD ++T +I M + +T + ++ + A D L D++ +
Sbjct: 173 DEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232
Query: 424 IVYQGPRE 431
++ PR+
Sbjct: 233 QLFTNPRD 240
|
Length = 252 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 29/171 (16%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTT-------LMDVLAGRKTGG---YIEGSISISG 953
L++++ +TA++G SG GK+T +++++ KT G Y + +I
Sbjct: 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97
Query: 954 YPKKQETFARISGYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL 1010
Y +E + ++ PN +IY+++ Y + KD + E+VE K+L
Sbjct: 98 YSV-EELRTNVGMVFQK-----PNPFPKSIYDNVTYGPKIHGIKDKKT--LDEIVE-KSL 148
Query: 1011 RNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
R + + D GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 149 RGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFA- 962
++L V+ +TAL+G SG+GK+TL+ V R Y E +S Y Q+ F
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 963 -------RISGYCE-QNDIHSPNVTIYESLLYSAWL-RLPKDM--FVEEVMELVEMKAL- 1010
R+ + N I PN++I+E++ L RL K E V +E L
Sbjct: 76 DVIELRRRVQMVFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLW 133
Query: 1011 ---RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059
++ L G LS Q++RL IA L P ++ DEPT+ LD A
Sbjct: 134 DEVKDRLDAPAG--KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
Length = 250 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 6e-07
Identities = 56/195 (28%), Positives = 77/195 (39%), Gaps = 52/195 (26%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
++ +S V+ LLGP G+GKTT L+ L G + +G ++ CG E VP R
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPSR 74
Query: 248 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
+ Q D + TVRE L GR G LS A + P
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG----------LSAAAARALVPP--- 121
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
+L+ L+ AD VG +SGG K+R+T LV
Sbjct: 122 ---------------------LLEFAKLENKADAKVGE-----LSGGMKRRLTLARALVN 155
Query: 362 PAKALFMDEISTGLD 376
L +DE +TGLD
Sbjct: 156 DPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 40/189 (21%), Positives = 62/189 (32%), Gaps = 48/189 (25%)
Query: 206 GPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE--FVPQRTCAYISQHDLHHGEMT 263
GP G GKTTLL+ L+G SG V + G L E P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYV 323
E L F A + +
Sbjct: 90 ALENLHF-------------WAAIHGGA-------------------------QRTIEDA 111
Query: 324 LKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQI 383
L +GL D+ +S GQ++R+ + + A +DE +T LD + +
Sbjct: 112 LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 384 VRFMRQMVH 392
+R +
Sbjct: 167 AGLLRAHLA 175
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 33/183 (18%)
Query: 918 LTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISGYPKKQETF-----ARIS 965
+TAL+G SG GK+T + D++ G K IEG++ G F R
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 966 GYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDG 1022
G Q +PN ++IY+++ Y + KD +++ E+VE ++L+ S + D
Sbjct: 91 GMVFQ----TPNPFLMSIYDNISYGPKIHGTKDK--KKLDEIVE-QSLKKSALWNEVKDK 143
Query: 1023 LSTE-------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
L+T Q++RL IA L P++I MDEPTS LD + + + N ++ +
Sbjct: 144 LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTII 203
Query: 1076 VCT 1078
+ T
Sbjct: 204 IVT 206
|
Length = 254 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 7e-07
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGYIEGSISISG---Y 954
Q L DVS +TA++G SG GK+T + + + +EG ++ G Y
Sbjct: 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109
Query: 955 PKKQETFA--RISGYCEQNDIHSPN---VTIYESLLYSAWLRLPK-----DMFVEEVMEL 1004
+ A R G Q PN +IY+++ Y L++ D VEE +
Sbjct: 110 DADVDPVALRRRIGMVFQK----PNPFPKSIYDNVAYG--LKIQGYDGDIDERVEESLRR 163
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+ + G+D LS Q++RL IA + +P +I MDEP S LD A + +
Sbjct: 164 AALWDEVKDQLDSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 1065 VRNTVDTGRTVVCTIH 1080
+ + TVV H
Sbjct: 223 IEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 917 VLTALVGVSGAGKTTLM---DVLAGRKTGGYIEGSISISG---YPKKQETFA--RISGYC 968
+ AL+G SG GK+TL+ + L +EG + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 969 EQNDIHSPNVTIYES----LLYSAWLRLPKDMFVEEVMELVEMKA-----LRNSLVGLPG 1019
Q P++TIY++ + + ++ K++ +E +E KA +++ L P
Sbjct: 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL--DERVEWALKKAALWDEVKDRLNDYPS 148
Query: 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
LS QR+RL IA L P I+ MDEPT+ +D A + + + T+V
Sbjct: 149 --NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIVLVT 205
Query: 1080 HQPS 1083
H P+
Sbjct: 206 HSPA 209
|
Length = 253 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 59/249 (23%), Positives = 96/249 (38%), Gaps = 51/249 (20%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-Q 246
L VS +K LLGP G GKTTLL+ ++G + SG + G ++T P +
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
R + Q+ +TV E + F R + AE+ R +A +
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA-----------L 115
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
+ G N +SGGQ++RV LV K L
Sbjct: 116 DLVQLEGY-----------------------ANRKPSQLSGGQQQRVAIARALVNEPKVL 152
Query: 367 FMDEISTGLDSS--TTFQI-VRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+DE LD Q+ ++ +++ + IT + + E + D I ++++G+
Sbjct: 153 LLDEPLGALDLKLRKDMQLELKRLQKELGIT----FVFVTHDQEEALTMSDRIAVMNKGK 208
Query: 424 IVYQG-PRE 431
I G P E
Sbjct: 209 IQQIGTPEE 217
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-07
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 13/186 (6%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARI 964
LL +++ RPG + G SGAGKT+L+ LAG + G I P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL--- 459
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGL-PGVDGL 1023
+ Q + P T+ E+L Y D + V+ V + L L L
Sbjct: 460 --FLPQRP-YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVL 516
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083
S +++RL A L+ P +F+DE TS LD + + ++ + TV+ H+P+
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT 575
Query: 1084 IDIFEA 1089
+ F +
Sbjct: 576 LWNFHS 581
|
Length = 604 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 9e-07
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 24/180 (13%)
Query: 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQET---FARIS-GYC 968
F +TA +G +GAGKTT + +L G G++ + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 969 EQNDIHSPNVTIYESLLYSAWLR----LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLS 1024
Q++I ++T+ E +L+ A L+ + +E ++E + RN LS
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE-----EAQDLS 1063
Query: 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
+++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ + H
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-07
Identities = 53/222 (23%), Positives = 84/222 (37%), Gaps = 57/222 (25%)
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGRKT---GGYIEGSISISGYPKKQETFARISGYCEQ 970
RPG + ++G +G GK+T + +LAG G Y P E R G Q
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRY-------EDPPSWDEVIKRFRGTELQ 150
Query: 971 NDIHSPNVTIYESLLYSAWLR----------LPK---------------DMFVEEVMELV 1005
N Y LY LR +PK +EV+E +
Sbjct: 151 N---------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL 201
Query: 1006 EMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
++ + + V LS + +R+ IA L+ + + F DEP+S LD R R +
Sbjct: 202 GLENVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256
Query: 1066 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
R + G+ V+ H ++ L + H++Y P
Sbjct: 257 RELAEDGKYVIVVEHDLAV--------LDYLSDFVHILYGEP 290
|
Length = 591 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 64/249 (25%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L ++ + L+GP G+GK+TLL+ + + + SG + G ++++ R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDL-RGRA 72
Query: 249 CAYISQH------D---LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
Y+ + D L V E + F+ GV R E+ +R A
Sbjct: 73 IPYLRRKIGVVFQDFRLLPD--RNVYENVAFALEVTGVPPR-----EIRKRVPAA----- 120
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
L+++GL + +SGG+++RV +
Sbjct: 121 ------------------------LELVGLSHKHR-----ALPAELSGGEQQRVAIARAI 151
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD---- 415
V L DE + LD TT++I+ +++ ++ T+++ A +L D
Sbjct: 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVV-----ATHAKELVDTTRHR 205
Query: 416 IILLSEGEI 424
+I L G++
Sbjct: 206 VIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 60/260 (23%), Positives = 107/260 (41%), Gaps = 62/260 (23%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ- 246
+L DVS + +T ++GP G+GK+TLL +S K SG +T G ELT +
Sbjct: 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKE 72
Query: 247 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSR---REKDAGIKPDPE 301
+ + + Q + + +TVR+ + F RF S+ ++D I
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGFG--------RF----PYSQGRLTKEDRRI----- 115
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
I+ ++ + L D L L SGGQ++R +L
Sbjct: 116 INEAIEYLHLEDLS-----DRYLDEL------------------SGGQRQRAFIAMVLAQ 152
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL------FDD 415
+ +DE LD + QI++ +R++ T+++ L +D+ D
Sbjct: 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCYSDH 205
Query: 416 IILLSEGEIVYQGPREYVLD 435
I+ L G++V QG + ++
Sbjct: 206 IVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 1e-06
Identities = 66/264 (25%), Positives = 104/264 (39%), Gaps = 58/264 (21%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
+++D+S + LLGP G+GK+T+ + L G G++T G E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLG----EPVPSR 71
Query: 248 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
+ Q D E TVRE L GR G +S RE +A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
+L+ L+ AD+ V +SGG K+R+T L+
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421
+ L +DE +TGLD I +R ++ ++ + E L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER--LCDRLCVLES 210
Query: 422 GEIVYQGPREYVLDFFESVGFRCP 445
G + +G ++D E +G C
Sbjct: 211 GRKIAEGRPHALID--EQIG--CN 230
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 35/216 (16%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+L IL V +VK L+G GSGK+TLL L+G D S SG V+ G L +
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMD 78
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
+ ++H + F V F L+ L+ E + E+ A
Sbjct: 79 EEARAKLRAKH------------VGF------VFQSFMLIPTLNALE-------NVELPA 113
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
++ S ++ G +L+ LGL D + +SGG+++RV G
Sbjct: 114 LLR--GESSRQSRNGAKALLEQLGLGKRLD-----HLPAQLSGGEQQRVALARAFNGRPD 166
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII 400
LF DE + LD T +I + + T+I+
Sbjct: 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202
|
Length = 228 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 51/217 (23%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-Q 246
L D++ + +LLGP G GKTT L+ ++G + + SGR+ G ++T+ P
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKD 71
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
R A + Q+ + MTV + + F L R P EID +
Sbjct: 72 RDIAMVFQNYALYPHMTVYDNIAFG---------------LKLR-----KVPKDEIDERV 111
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
+ A ++L ++ + + + +SGGQ++RV G +V K
Sbjct: 112 REVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152
Query: 367 FMDEISTGLDSSTTFQ----IVRFMRQMVHITDVTMI 399
MDE + LD+ Q + R +++ T I
Sbjct: 153 LMDEPLSNLDAKLRVQMRAELKRLQQRL----GTTTI 185
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 43/191 (22%), Positives = 61/191 (31%), Gaps = 50/191 (26%)
Query: 201 MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP--QRTCAYISQHDLH 258
+ GP GSGKTTLL+ L+G S +GRV G L R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSL 318
++V E L F E LA
Sbjct: 85 KTTLSVLENLRFWHADHSDEQVEEALAR-------------------------------- 112
Query: 319 GTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSS 378
+GL+ D V +S GQ++RV +L+ +DE +T LD +
Sbjct: 113 --------VGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
Query: 379 TTFQIVRFMRQ 389
+ M
Sbjct: 160 GVARFAEAMAG 170
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-06
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYC 236
L D++ V + ++GP GSGK++LL AL G K S+ V G + Y
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYV 71
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 31/190 (16%)
Query: 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVL 936
+ + V+Y S G N +L D+S + T +VG+SG+GK+TL +L
Sbjct: 473 DIVINDVSY---------SYGYGSN---ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 937 AGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNV---TIYESLLYSAWL 990
G G I ++G+ K T + Y Q P + +I E+LL A
Sbjct: 521 VGFFQARS--GEILLNGFSLKDIDRHTLRQFINYLPQE----PYIFSGSILENLLLGAKE 574
Query: 991 RLPKDMFVEEVMELVEMKA-LRNSLVGLP---GVDG--LSTEQRKRLTIAVELVANPSII 1044
+ +D + E+ E+K + N +G +G +S Q++R+ +A L+ + ++
Sbjct: 575 NVSQDE-IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVL 633
Query: 1045 FMDEPTSGLD 1054
+DE TS LD
Sbjct: 634 ILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKK 957
R Q+L D+S G + AL+G SG+GKTTL+ ++AG +T G+I +S +
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWL-----RLPKDMFVEEVMELVEMKALRN 1012
R G+ Q+ ++T+++++ + + R +V +L+EM L +
Sbjct: 73 D----RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH 128
Query: 1013 SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 129 LADRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 27/190 (14%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
IL ++ V+P + ++GP GSGK+TL L+G+ D + G V + G +L E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
GE + + GV +F L L+ G +P +D F
Sbjct: 74 DRA----------GE-GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDRFD 119
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
M KI L + D++ + G SGG+KKR +M V +
Sbjct: 120 FQDLMEE-----------KIALLKMPEDLLT-RSVNVGFSGGEKKRNDILQMAVLEPELC 167
Query: 367 FMDEISTGLD 376
+DE +GLD
Sbjct: 168 ILDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-06
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 13/207 (6%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK----QETF 961
L + RPG L G +GAGK+TLM +L+G G +G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVM-----ELVEMKALRNSLVG 1016
Q P +++ E++ + LP M L+ L V
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076
P V Q++ + IA L ++ +DEP+S L + I++ +R+ V
Sbjct: 137 RP-VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL--KAHGVA 193
Query: 1077 CTIHQPSIDIFEAF-DELFLMKRGGHV 1102
C ++ +A D + +++ G HV
Sbjct: 194 CVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 61/214 (28%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
LQ++ + VL + GVSG+GK+TL+ G Y G + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK-------- 56
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGL----PG-- 1019
S N I F++++ L+++ GL G
Sbjct: 57 --------FSRNKLI----------------FIDQLQFLIDV--------GLGYLTLGQK 84
Query: 1020 VDGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
+ LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G TV+
Sbjct: 85 LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144
Query: 1078 TIHQPSIDIFEAFDELFLM-----KRGGHVIYAG 1106
H D+ + D + K GG V+++G
Sbjct: 145 IEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 25/171 (14%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGYIEGSISISG---YP 955
+ + L+ + F +TAL+G SG GK+T + L G I G++S+ G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 956 KKQET--FARISGYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL 1010
++ + G Q PN +IYE+++Y L KD V + E VE +L
Sbjct: 77 PNEDVVQLRKQVGMVFQQ----PNPFPFSIYENVIYGLRLAGVKDKAVLD--EAVET-SL 129
Query: 1011 RNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+ + + D LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 64/272 (23%), Positives = 107/272 (39%), Gaps = 59/272 (21%)
Query: 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK-----SDKSLRVSGRVTYCG 237
+R IL D+S ++P R+T LLG G+GK+TLL+AL+G + + RV+G VT G
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 238 HELTEFVPQRTC---AYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294
L R A + Q + RE + LG L+ R+ +
Sbjct: 71 EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIV-----LLGRYPHARRAGALTHRDGEI 125
Query: 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
+A A++G +G D +SGG+ RV
Sbjct: 126 A----------WQALALAGATALVGRDVTT--------------------LSGGELARVQ 155
Query: 355 TGEML---------VGPAKALFMDEISTGLDSSTTFQIVRFMRQMV---HITDVTMIISL 402
+L P + L +DE + LD + +++ +R++ ++ + ++
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215
Query: 403 LQPAPETYDLFDDIILLSEGEIVYQGPREYVL 434
A D I +L++G IV G VL
Sbjct: 216 NLAARHA----DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI-----SGYPKKQETFARISGYCEQ 970
G + A++G SGAGK+TL++++AG GSI + +G Q + + + E
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSML--FQEN 79
Query: 971 NDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRK 1029
N ++T+ +++ L + +E + + + + L LP LS QR+
Sbjct: 80 NLF--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE--QLSGGQRQ 135
Query: 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1083
R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 61/187 (32%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISGYPK 956
+L++V+ +TAL+G SG GK+T + D++ G + EG I + G
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH----EGHIYLDG--- 69
Query: 957 KQETFARISGYCEQNDIHSPNV---------------------TIYESLLYSAWLRLPKD 995
DI+ P V +I++++ Y + D
Sbjct: 70 --------------VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDD 115
Query: 996 M-FVEEVMELVEMKALRNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMD 1047
F+EE +E ++L+ + + D GLS Q++RL IA + +P +I MD
Sbjct: 116 EDFIEERVE----ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD 171
Query: 1048 EPTSGLD 1054
EP S LD
Sbjct: 172 EPCSALD 178
|
Length = 250 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 38/238 (15%)
Query: 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGYIEGSISISGYPKKQETFARI 964
DVS G + AL+G SG GK+TL+ +LAG + G + + +S P Q R
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RP 92
Query: 965 SGYCEQNDIHSPNVTIYESLLYS-AWLRLPKDMF---VEEVMELVEMK--ALRNSLVGLP 1018
Q+ P++T+ +++ + +LPK V E++ LV M+ A R
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP----- 147
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVC 1077
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 1078 TIHQPSIDIFEAFD---ELFLMKRGGHV-------IYAGPLGRQSHKL---VEYFEAV 1122
H D EA + +M RG V IY P R S + V FE V
Sbjct: 206 VTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGV 259
|
Length = 377 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 49/232 (21%)
Query: 204 LLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-RTCAYISQHDLHHGEM 262
LLGP G GKTTLL+ L+G SG + G ++T P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDY 322
TV E + F + V P EI +
Sbjct: 58 TVEENVAFGLKMRKV--------------------PRAEIKPRVLE-------------- 83
Query: 323 VLKILGLDICADIMVGNEMRRGI--SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 380
L+++ L+ AD R+ SGGQ++RV LV K L +DE + LD
Sbjct: 84 ALRLVQLEEFAD-------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136
Query: 381 FQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG-PRE 431
Q+ ++ + +T + + E + D I ++ +G+I G P E
Sbjct: 137 DQMQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEE 187
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY------IEGSISISGYP 955
+L+D+S PG +TAL+G +GAGK+TL+ LAG TGG + G ++++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 23/157 (14%)
Query: 918 LTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISGY----PKKQETFARIS- 965
+TA++G SG GKTTL+ D + G + +EG I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLRLPK-----DMFVEEVMELVEMKALRNSLVGLPGV 1020
G Q P ++IY+++ + + K D VEE ++ + S + PG
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGT 145
Query: 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057
LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 146 R-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVL-------AGRKTGGYIEGSISISGY 954
RL +L++VS G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 955 PKKQETFARIS--GYCEQNDIHSPNVT----IYESLLYSAWLRLPKDMFVEEVMELVEMK 1008
++ R GY Q P V+ + E LL P++ EL+
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARARARELLARL 136
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
+ L LP S +++R+ IA +A+ I+ +DEPT+ LDA +V+ +
Sbjct: 137 NIPERLWHLPPAT-FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA 195
Query: 1069 VDTGRTVVCTIHQPSI 1084
G ++ H +
Sbjct: 196 KARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 24/195 (12%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG----- 953
RL L S R G + LVG +GAGK+TL+ +AG G GSI +G
Sbjct: 8 VSTRLGPL---SAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEA 61
Query: 954 YPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS 1013
+ AR Y Q + +++ L + + + E+ E L +
Sbjct: 62 WS--AAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK 119
Query: 1014 LVGLPGVDGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDARAAAIVMRTV 1065
L G V+ LS E QR RL AV L NP+ ++ +DEP + LD A + R +
Sbjct: 120 L-GRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL 176
Query: 1066 RNTVDTGRTVVCTIH 1080
G VV + H
Sbjct: 177 SELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 33/184 (17%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA---GRKTGGYIEGSISISGYPKKQE- 959
L+ VS +TAL+G SG GK+T + L R I+GS+ + G Q+
Sbjct: 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118
Query: 960 ----TFARISGYCEQNDIHSPN---VTIYESLLYSA----------WLRLPKDMFVEEVM 1002
+ G Q SPN +I E++ Y RL +
Sbjct: 119 VNLVELRKRVGMVFQ----SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174
Query: 1003 ELVEMKALRNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055
ELVE ++LR + + D GLS Q++RL IA L +P +I MDEP S LD
Sbjct: 175 ELVE-RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 1056 RAAA 1059
A +
Sbjct: 234 IATS 237
|
Length = 305 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-06
Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 43/245 (17%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP--- 245
L V+ V P + LLG G+GK+TL++ LSG + + G +T +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 246 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID- 303
Q I Q E+TV E L + GR L T+ K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGRHL---TK-----------KVCGV---NIIDW 119
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
M+ A +L +GL + D V N +S K+ + + L+ A
Sbjct: 120 REMRVRA----------AMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
K + MDE ++ L + + M Q+ + T I+ + E + D ++ +G
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR--KEGTAIVYISHKLAEIRRICDRYTVMKDGS 222
Query: 424 IVYQG 428
V G
Sbjct: 223 SVCSG 227
|
Length = 510 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 60/245 (24%)
Query: 199 SRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTE-----FVP--QRTC 249
+T L GP GSGKT+L+ ++G + D+ GR+ G L + F+P +R
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLTRPDE-----GRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 250 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKAT 309
Y+ Q TVR L + G + +F+ L L
Sbjct: 79 GYVFQDARLFPHYTVRGNLRY-GMWKSMRAQFDQLVAL---------------------- 115
Query: 310 AMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMD 369
LG +++L +SGG+K+RV G L+ + L MD
Sbjct: 116 --------LGIEHLLD--------------RYPGTLSGGEKQRVAIGRALLTAPELLLMD 153
Query: 370 EISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429
E LD +I+ ++ ++ ++ ++ E L D +++L G++ GP
Sbjct: 154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGP 212
Query: 430 REYVL 434
E V
Sbjct: 213 LEEVW 217
|
Length = 352 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242
EIL V+ +K + L+GP GSGK+TL + + G + G + + G ++T+
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGEDITD 68
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP-----K 956
+ + DVS + R G + + G+ GAG+T L+ L G G + EG++ I+G P
Sbjct: 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNP 330
Query: 957 KQETFARISGYCEQNDIHS--PNVTIYESLLYSAWLRLPKDMFVEEVMEL----VEMKAL 1010
Q A I+ E H P + + +++ S M ++ EL ++ L
Sbjct: 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL 390
Query: 1011 --RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
+ + LP + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 391 KVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449
Query: 1069 VDTGRTVV 1076
G ++
Sbjct: 450 AQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 35/216 (16%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGYIEGSISISGYPKKQET 960
L+QD++ + + G + ALVG SG+GK+ ++ +L T G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 961 F-ARISGYCEQNDIHS--PNVTIYESLLYSAWLRL-----PKDMFVEEVMELVEMKALRN 1012
R QN + P T+ + + + + +E +
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA--------- 109
Query: 1013 SLVGLPGVDG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
VGLP + LS +R+ IA+ L+ P + DEPT+ LD A V++
Sbjct: 110 --VGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKL 167
Query: 1065 VRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+R G ++ H + + DE+ +M G
Sbjct: 168 LRELRQLFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 345 ISGGQKKRVT-TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL 403
+SGGQK+RV G + V P K + +DE ++ LD + QI++ +R++ ++T +IS+
Sbjct: 144 LSGGQKQRVAIAGILAVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISIT 201
Query: 404 QPAPETYDLFDDIILLSEGEIVYQG-PREYVLD--FFESVGFRCP---------ERKGAA 451
E ++ D +++L +G+++ QG P E + +G P + KG +
Sbjct: 202 HDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS 260
Query: 452 DFLQEVTSRKDQQQYWCKKN 471
QE+ + + QY C+ N
Sbjct: 261 -VPQEINTEEKLVQYLCQLN 279
|
Length = 282 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 44/222 (19%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKK 957
+ +L+ +S + G AL+G +G GK+TL+ +L T + +G I ++G P
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-- 403
Query: 958 QETFARISGYCEQN----------DIHSPNVTIYESLLYSAWLRLPK--DMFVEEVMELV 1005
I+ Y E +H + T+ ++LL L P D + EV++ V
Sbjct: 404 ------IADYSEAALRQAISVVSQRVHLFSATLRDNLL----LAAPNASDEALIEVLQQV 453
Query: 1006 EMKALRNSLVGLPGVDG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057
L L G++ LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 454 G---LEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510
Query: 1058 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
++ + +TV+ H+ + E FD + +M G
Sbjct: 511 ERQILELLA-EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 61/257 (23%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGR-VTYCGHELTE 242
E L ++ + M LLGP G+GK+TL +G + + + G + Y L E
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 243 FVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
++T + Q+ D TV E + F LG+ E+ +R K+A
Sbjct: 76 V--RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA------- 121
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
+KA M G + N+ +SGGQKKRV +L
Sbjct: 122 ----LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAM 154
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL------FDD 415
+ + +DE ++GLD QI++ + + + +T+IIS T+D+ D
Sbjct: 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIIS-------THDVDLVPVYADK 206
Query: 416 IILLSEGEIVYQG-PRE 431
+ ++S+G+I+ +G P+E
Sbjct: 207 VYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 23/198 (11%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG--------- 953
L +L ++ + G AL+G SG+GK+T++ +L + EG I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 954 ----YPKKQETFARIS---GYCEQNDIHSPNVTIYESLLYSAWLRL--PKDMFVEEVMEL 1004
P ++ ++ G Q+ P+ T+ +++ + L L + + MEL
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL 130
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
++M L + +P LS Q++R+ IA L P ++ DE TS LD V+
Sbjct: 131 LDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188
Query: 1065 VRN-TVDTGRTVVCTIHQ 1081
+R + T++ H+
Sbjct: 189 IRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVL-------AGRKTGGYI--EGSISISGY 954
L++++ + +TA++G SG GK+T + L K G + GS + G
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 955 PKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSL 1014
E I G Q P +I++++ Y + K+ +++ E+VE K+L++
Sbjct: 86 VDLVELRKNI-GMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNK--KKLQEIVE-KSLKDVA 140
Query: 1015 VGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+ D LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 141 LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 4e-06
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 49/197 (24%)
Query: 889 MPAEMKSQGIE--ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGG 943
M ++K +G+ ++ Q+L++++ F +TA++G SG GK+TL+ L +G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 944 YIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE-----SLLYSAWLRLPKDMF- 997
+EG++ + + +I+SPN+ + +++ PK +F
Sbjct: 61 RLEGAVLL-----------------DNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFD 103
Query: 998 -------------VEEVMELVEMKALRNSLVGLPGVD-------GLSTEQRKRLTIAVEL 1037
+ E+VE K+LR + + D LS Q++RL IA L
Sbjct: 104 NVAFGPRMLGTTAQSRLDEVVE-KSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162
Query: 1038 VANPSIIFMDEPTSGLD 1054
P +I MDEP S LD
Sbjct: 163 AIEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQETF 961
L+ V+ + G +L+G SG GK+TL+++++G + T G +EG P + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV- 1020
QN P +T+ E+ + A R+ D+ E +VE +LVGL
Sbjct: 61 --------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHI---ALVGLTEAA 108
Query: 1021 ----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1075
LS ++R+ IA L P ++ +DEP LDA + + + TV
Sbjct: 109 DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 1076 VCTIHQPSIDIFEAFDELFLMKR 1098
+ H D+ EA L L R
Sbjct: 169 LMVTH----DVDEA---LLLSDR 184
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 24/208 (11%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQ--E 959
+ DVS R G + ++G+SG+GK+TL+ + T G I+G I+ +K+ E
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ-DIAAMSRKELRE 98
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLP 1018
+ Q+ P+ T+ E++ + ++ +P+ E E +E+ L P
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRNTVDTGRT 1074
D LS ++R+ +A L +P I+ MDE S LD ++R +T
Sbjct: 159 --DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE---LQKT 213
Query: 1075 VVCTIHQPSIDIFEAF---DELFLMKRG 1099
+V H D+ EA D + +MK G
Sbjct: 214 IVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 58/196 (29%)
Query: 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISG 966
DV+ G LT + G +G+GK+T++D + G G + + I
Sbjct: 14 NDVTFG--EGSLTIITGPNGSGKSTILDAI------GLALGGAQSATRRRSGVKAGCIVA 65
Query: 967 YCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026
EL+ LS
Sbjct: 66 A--------------------------------VSAELIFT------------RLQLSGG 81
Query: 1027 QRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
+++ +A+ L + + +DE GLD R + + + G V+ H P
Sbjct: 82 EKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141
Query: 1083 SIDIFEAFDELFLMKR 1098
++ E D+L +K+
Sbjct: 142 --ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 55/250 (22%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
+ ++S V P + LLGP G+GKTT + + G + + G +T+ G L++ + R
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRI 74
Query: 249 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKA 308
Y+ + + +MTV + L + LAEL K K ++ A+++
Sbjct: 75 -GYLPEERGLYPKMTVEDQLKY-------------LAELKGMPKAEIQK---KLQAWLER 117
Query: 309 TAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFM 368
+ G KT KI L S G ++++ ++ + L +
Sbjct: 118 LEIVGKKTK-------KIKEL----------------SKGNQQKIQFISAVIHEPELLIL 154
Query: 369 DEISTGLDSSTTFQIVRFMRQMV-HITD--VTMIIS--LLQPAPETYDLFDDIILLSEGE 423
DE +GLD V ++ + + + T+I S ++ E L D +++L +G+
Sbjct: 155 DEPFSGLDPVN----VELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDRLLMLKKGQ 207
Query: 424 IVYQGPREYV 433
V G E +
Sbjct: 208 TVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 52/195 (26%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
+++ +S V LLGP G+GK+T+ + + G + +G++T G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLG----VPVPAR 108
Query: 248 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
+ Q D E TVRE L GR G+ TR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR--------------------E 148
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
I+A + + +L+ L+ AD V + +SGG K+R+T L+
Sbjct: 149 IEAVIPS--------------LLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 362 PAKALFMDEISTGLD 376
+ L +DE +TGLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 69/255 (27%), Positives = 108/255 (42%), Gaps = 62/255 (24%)
Query: 181 SKK-RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239
SK+ K ++++S V + + LLGP G+GK+TLL+ ++G + SG + + GH
Sbjct: 7 SKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHP 63
Query: 240 LTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFE---LLAELSRREKDAGI 296
T + DLH +G+ E L L+ RE
Sbjct: 64 WT------------RKDLHK-----------------IGSLIESPPLYENLTAREN---- 90
Query: 297 KPDPEIDAFMKA-TAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
+K T + GL S D VL I+ L G + + S G K+R+
Sbjct: 91 ---------LKVHTTLLGLPDSR-IDEVLNIVDLTN-----TGKKKAKQFSLGMKQRLGI 135
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIIS--LLQPAPETYDLF 413
L+ K L +DE + GLD Q +R + + +T+I+S +L E L
Sbjct: 136 AIALLNHPKLLILDEPTNGLD-PIGIQELRELIRSFPEQGITVILSSHILS---EVQQLA 191
Query: 414 DDIILLSEGEIVYQG 428
D I ++SEG + YQG
Sbjct: 192 DHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
++L+ VS G + +++G SG+GK+T + + + EGSI ++G + R
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVNG---QTINLVR 73
Query: 964 IS-GYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFV-EEVME-------LVEMKALRNSL 1014
G + D + + + L M V E VME L + +A ++
Sbjct: 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAV 133
Query: 1015 VGLP--GVDG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
L G+D LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 134 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193
Query: 1064 TVRNTVDTGRTVVCTIHQ 1081
++ + G+T+V H+
Sbjct: 194 IMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 22/236 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQETF 961
L +V+ G L+G +G+GK+TL+ L G + T G I+G + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG-VDITDKKVKLSDI 81
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN-SLVGLPGV 1020
+ G Q P ++E + P ++ + E E +E + R ++VGL
Sbjct: 82 RKKVGLVFQ----YPEYQLFEETIEKDIAFGPINLGLSE--EEIENRVKRAMNIVGLDYE 135
Query: 1021 D-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
D LS Q++R+ IA + P I+ +DEPT+GLD + ++ ++
Sbjct: 136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYN 195
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVP-GVPKI 1128
+ + D+ + D + +M + G G R+ K VE E++ VP++
Sbjct: 196 MTIILVSHSMEDVAKLADRIIVMNK-GKCELQGTP-REVFKEVETLESIGLAVPQV 249
|
Length = 287 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-06
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGYIEGSISISGYPKKQETFARI 964
++DVS R G + + GV+G G++ L++ ++G RK G I ++G R
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLGRLSPRE 330
Query: 965 S-----GYCEQNDIH---SPNVTIYESLL--------YSAWLRLPKDMFVEEVMELVEMK 1008
Y ++ ++++ E+L+ +S L + + EL+E
Sbjct: 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEF 390
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
+R P LS +++L +A EL P ++ +PT GLD A + +
Sbjct: 391 DVRAPSPDAP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449
Query: 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
D G+ V+ I E DE+ + VIY G
Sbjct: 450 RDAGKAVLL--------ISEDLDEILELSDRIAVIYEG 479
|
Length = 501 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 18/188 (9%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGYIEGSISISGYPK 956
+L VS F +T+L+G +G+GKTT + D ++G R +G + G SI Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLL--YSAWLRLPKDMF----VEEVMELVEMKAL 1010
E F R G Q P ++I +++L A +P+ F + E+ A+
Sbjct: 96 VLE-FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV 153
Query: 1011 RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+ D
Sbjct: 154 KDRLSDSPF--RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD 211
Query: 1071 TGRTVVCT 1078
++ T
Sbjct: 212 RLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 6e-06
Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 72/257 (28%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF---- 243
+L +S +K LLG G GK+TLLQ L+ D G + G + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAA 411
Query: 244 -------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
V QR ++ T+R+ L LLA
Sbjct: 412 LRQAISVVSQRV--HLFSA-------TLRDNL--------------LLA----------- 437
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
P+ +A ++ GL+ L D GL+ +G E R +SGG+++R+
Sbjct: 438 APNASDEALIEVLQQVGLEKLLEDD-----KGLNA----WLG-EGGRQLSGGEQRRLGIA 487
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL---- 412
L+ A L +DE + GLD+ T QI+ + + H + T+++ T+ L
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI-------THRLTGLE 538
Query: 413 -FDDIILLSEGEIVYQG 428
FD I ++ G+I+ QG
Sbjct: 539 QFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 50/162 (30%)
Query: 213 TTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGEMTVRETL 268
+TLL+ ++G + SG + G + T ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 269 DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG 328
F R +E DA + L+ +G
Sbjct: 58 FFGLR---------------DKEADA------RAEE------------------ALERVG 78
Query: 329 LDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDE 370
L D + SGGQK+RV L+ K L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 58/263 (22%), Positives = 103/263 (39%), Gaps = 63/263 (23%)
Query: 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY-----CGHELT---- 241
DVS + P + ++G GSGK+TLL L+G+ G TY EL
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSE 77
Query: 242 ---EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
+ + ++ Q+ M V + R + +G R
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHY---------------- 121
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM 358
++ATA L+ ++I + +++ R SGG ++R+
Sbjct: 122 -----GNIRATAQDWLEE------------VEIDPTRI--DDLPRAFSGGMQQRLQIARN 162
Query: 359 LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD------L 412
LV + +FMDE + GLD S +++ +R +V + +II T+D L
Sbjct: 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARLL 215
Query: 413 FDDIILLSEGEIVYQGPREYVLD 435
++++ +G +V G + VLD
Sbjct: 216 AQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 27/170 (15%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYP---- 955
+L +VS + + G AL+G SG GK+TL +L G + G++S G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ----GNVSWRGEPLAKL 79
Query: 956 --KKQETFARISGYCEQNDIHS--PNVTIYESL------LYSAWLRLPKDMFVEEVMELV 1005
+++ F R Q+ I + P T+ E + L L L K + E++
Sbjct: 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL----LSLDKAERLARASEML 135
Query: 1006 EMKALRNSLVG-LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
L +S++ P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 136 RAVDLDDSVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 29/212 (13%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
++L+ VS +TA++G SG GK+T + L +E + + G + E F +
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEG---RVEFFNQ 74
Query: 964 ISGYCEQNDIH-----------SPNV---TIYESLLYSAWL-----RLPKDMFVEEVMEL 1004
+ Y + +++ PN+ ++Y+++ Y + +L D VE ++
Sbjct: 75 -NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKD 133
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
++ + +D LS Q++RL IA L P ++ MDEP GLD A+ V
Sbjct: 134 ADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESL 192
Query: 1065 VRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 1094
+++ + + T+V H + F F
Sbjct: 193 IQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 8e-06
Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 31/200 (15%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVL--AGRKTGGYIE-GSISISGYPKK 957
N Q + DVS + G A+VG +GAGKTTL+++L T G I I I+ ++
Sbjct: 346 NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRE 405
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK-DMFVEEVMELVEMKALRN---- 1012
R S D N +I E++ RL + EEV E + A +
Sbjct: 406 S---LRKSIATVFQDAGLFNRSIRENI------RLGREGATDEEVYEAAKAAAAHDFILK 456
Query: 1013 ------SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
+LVG G + LS +R+RL IA ++ N I+ +DE TS LD A V+
Sbjct: 457 RSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVK 511
Query: 1067 NTVDT---GRTVVCTIHQPS 1083
N +D RT H+ S
Sbjct: 512 NAIDALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-06
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 42/194 (21%)
Query: 893 MKSQGIEENRLQLLQDVS---GAFRP----------GVLTALVGVSGAGKTTLM------ 933
++ I +N + LQ+V+ G F G +TAL+G SG GK+T++
Sbjct: 3 KTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62
Query: 934 -DVLAGRKTGGYI--EGSISISGYPKKQETFARISGYCEQNDIHSPN---VTIYESLLYS 987
D++ G G + +G+ E RI +Q PN +IYE++ +
Sbjct: 63 NDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQ-----PNPFPKSIYENIAFG 117
Query: 988 AWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD-------GLSTEQRKRLTIAVELVAN 1040
A + + + ++ ELVE ++LR + V D LS Q++RL IA +
Sbjct: 118 ARI----NGYTGDMDELVE-RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172
Query: 1041 PSIIFMDEPTSGLD 1054
P +I MDEP S LD
Sbjct: 173 PEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGYIEGSISISGYPKKQ-- 958
Q L++++ +TAL+G SG GK+T + + + G + EG I + +P
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNI 87
Query: 959 --------ETFARISGYCEQNDIHSPN---VTIYESLLYSAWLR-LPKDMFVEEVMELVE 1006
E RIS ++ PN +I+E++ Y +R + + +EE +E
Sbjct: 88 LSPEVDPIEVRMRISMVFQK-----PNPFPKSIFENVAYGLRIRGVKRRSILEERVE--- 139
Query: 1007 MKALRNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059
ALRN+ + D LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 140 -NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 8e-06
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 15/208 (7%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L+ + G + AL+G +GAGK+TLM ++AG G++ I G P + T A+
Sbjct: 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAH 84
Query: 966 GY----CEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD 1021
Q + PN+++ E++L+ LPK + M+ ++ A + L
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQKMK--QLLAALGCQLDLDSSA 138
Query: 1022 G-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
G L R+ + I L+ + I+ +DEPT+ L + +R + G +V H
Sbjct: 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISH 198
Query: 1081 QPSIDIFEAFDELFLMKRGGHVIYAGPL 1108
+ +I + D + +M R G + +G
Sbjct: 199 KLP-EIRQLADRISVM-RDGTIALSGKT 224
|
Length = 510 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 39/207 (18%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH-ELTEFVPQR 247
L+D+S V P + +L+GP G+GKTTL+ ++GK+ G V + G +LT+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTK----- 72
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFE---LLAELSRREK-DAGIKPDPEID 303
+ +H + G+G +F+ + L+ RE + + D +
Sbjct: 73 ----LPEHRIAR---------------AGIGRKFQKPTVFENLTVRENLELALNRDKSVF 113
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
A + A + + D +L +GL D + +S GQK+ + G +L
Sbjct: 114 ASLFARLRAEERRR--IDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDP 166
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQM 390
K L +DE G+ + T + ++ +
Sbjct: 167 KLLLLDEPVAGMTDAETEKTAELLKSL 193
|
Length = 249 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 9e-06
Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 50/224 (22%)
Query: 881 DHVNYFVDMPAEMKSQGIEENR---------LQLLQDVSGAFRPG---VLTAL------- 921
+ V ++D+P+E + IE NR +DV +RPG VL L
Sbjct: 1204 ERVGNYIDLPSEATAI-IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPS 1262
Query: 922 -----VGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSP 976
VG +GAGK+++++ L + +G I I + D+
Sbjct: 1263 EKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT---------DLRRV 1311
Query: 977 NVTIYES-LLYSAWLRLPKDMFVE-------EVMELVEMK-ALRNSLVGL-----PGVDG 1022
I +S +L+S +R D F E E +E +K + + GL G +
Sbjct: 1312 LSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 32/178 (17%)
Query: 892 EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI--EG 947
++++ G ++L ++S + R G + G SG GK+TL+ ++A T G + EG
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 948 SISISGYPKKQETFARISGYCEQNDIHSPNV---TIYESLLYSAWLRLPKDMFVEEVMEL 1004
IS E + + YC Q +P + T+Y++L++ +R +
Sbjct: 69 E-DISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQ---------- 111
Query: 1005 VEMKALRNSLV--GLP------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+ + L LP + LS +++R+++ L P ++ +DE TS LD
Sbjct: 112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 9e-06
Identities = 37/197 (18%), Positives = 61/197 (30%), Gaps = 62/197 (31%)
Query: 915 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIH 974
PG + +VG G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 975 SPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA 1034
+ +EEV++ + + + G S RL +A
Sbjct: 39 --------------------EDILEEVLDQLLLIIV--------GGKKASGSGELRLRLA 70
Query: 1035 VELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTIHQPSI-- 1084
+ L P ++ +DE TS LDA A+++ + TV+ T +
Sbjct: 71 LALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
Query: 1085 --DIFEAFDELFLMKRG 1099
+ FD ++
Sbjct: 131 PALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL 403
G+SGGQ++RV L L +DE ++ LD T ++ ++ + +T+++
Sbjct: 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLV-- 157
Query: 404 QPAPETYDLF------DDIILLSEGE 423
T+DL D +++L +G+
Sbjct: 158 -----THDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 51/221 (23%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
LHDVS ++ L GP G+GKTTLL+ L G S G+V G ++
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RG 71
Query: 247 RTCAYISQH------DLHH-GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
R + + D + TV E + G R E+ RR A
Sbjct: 72 RQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA----- 121
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
L+ +GL + +SGG+++RV +
Sbjct: 122 ------------------------LRQVGL---EHKADAFPEQ--LSGGEQQRVAIARAI 152
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII 400
V L DE + LD + +I+ +++ ++ T+I+
Sbjct: 153 VNSPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIV 192
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 70/308 (22%), Positives = 122/308 (39%), Gaps = 73/308 (23%)
Query: 142 FENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRL---FPSKKRKLEILHDVSGIVKP 198
F L + GTRA+ G + F + +P + R L +S +++P
Sbjct: 308 FTLLDSPPEKDTGTRAIER--------ARGDVEFRNVTFRYPGRDR--PALDSISLVIEP 357
Query: 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ---RTCAYISQH 255
L+G GSGK+TL+ + + SG++ GH+L ++ R A +SQ
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ- 413
Query: 256 DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLK 315
D+ T+ + + GR AE+ R A + +D GL
Sbjct: 414 DVVLFNDTIANNIAY-GRTEQADR-----AEIERALAAAYAQ--DFVDKLPL-----GLD 460
Query: 316 TSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGL 375
T +G + VL +SGGQ++R+ L+ A L +DE ++ L
Sbjct: 461 TPIGENGVL--------------------LSGGQRQRLAIARALLKDAPILILDEATSAL 500
Query: 376 DSSTTFQIV----RFMRQMVHITDVTMII----SLLQPAPETYDLFDDIILLSEGEIVYQ 427
D+ + + R M+ T++I S ++ A D I+++ +G IV +
Sbjct: 501 DNESERLVQAALERLMQGR-----TTLVIAHRLSTIEKA-------DRIVVMDDGRIVER 548
Query: 428 GPREYVLD 435
G +L
Sbjct: 549 GTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 49/252 (19%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
E L++++ I + ++GP G+GK+TL + +G + SG V G +T+
Sbjct: 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITK---- 70
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
+RE F VG F+ D P E D
Sbjct: 71 ---------------ENIREVRKF------VGLVFQ-------NPDDQIFSPTVEQDIAF 102
Query: 307 KATAMSGLKTSL---GTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
+ GL L +LGL+ D + +SGG+KKRV ++
Sbjct: 103 GPINL-GLDEETVAHRVSSALHMLGLEELRD-----RVPHHLSGGEKKRVAIAGVIAMEP 156
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL--LQPAPETYDLFDDIILLSE 421
+ L +DE + GLD +++ F+ + +T+I S L PE + D I ++ +
Sbjct: 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPE---MADYIYVMDK 213
Query: 422 GEIVYQGPREYV 433
G IV G E +
Sbjct: 214 GRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 47/267 (17%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
K + +++ + T ++GP G GK+TLL+ LS G V G + +
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYA 75
Query: 245 PQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
+ R ++Q+ G++TV+E L GR L + +++A
Sbjct: 76 SKEVARRIGLLAQNATTPGDITVQE-LVARGRY----PHQPLFTRWRKEDEEA------- 123
Query: 302 IDAFMKATAMSGLKT-SLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
+ M+AT ++ L S+ T +SGGQ++R +L
Sbjct: 124 VTKAMQATGITHLADQSVDT------------------------LSGGQRQRAWIAMVLA 159
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420
+ +DE +T LD S ++ + ++ T+ ++L + +I L
Sbjct: 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTL-AAVLHDLNQACRYASHLIALR 218
Query: 421 EGEIVYQG-PREYVL-DFFESV-GFRC 444
EG+IV QG P+E V + E + G RC
Sbjct: 219 EGKIVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 50/229 (21%)
Query: 204 LLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEM 262
++GP G+GK+TLL ++G + SG + T P QR + + Q + +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDY 322
TVR+ + G+ P +K A K
Sbjct: 86 TVRQNIGL------------------------GLHPG------LKLNAEQQEKVV----- 110
Query: 323 VLKILGLDICADIMVGNEMRR---GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSST 379
D + + + + R +SGGQ++RV LV P L +DE + LD
Sbjct: 111 -------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163
Query: 380 TFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
+++ ++Q+ T+++ + + + I ++S+G+I
Sbjct: 164 REEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 35/155 (22%)
Query: 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS-- 975
LT L+G SG GKTT++ ++AG +T G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 976 ------PNVTIYESLLYSAWLRL---PKDMFVEEVMELVEMKALRNSLVGLPGVDG---- 1022
P++T++E++ + LR+ P VME ALR +V L
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAAEITPRVME-----ALR--MVQLEEFAQRKPH 143
Query: 1023 -LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 47/226 (20%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIE---GSISISG-----YPKK 957
+ D S G + ++G+SG+GK+TL+ R IE G I + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 958 Q--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSL 1014
+ E + Q+ P+ T+ E++ + ++ +PK E +E +E L
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALE-------L 151
Query: 1015 VGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT----- 1064
VGL G + LS ++R+ +A L +P I+ MDE S LD ++RT
Sbjct: 152 VGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDE 206
Query: 1065 -VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAG 1106
+ +T+V H D+ EA D + +MK G ++ G
Sbjct: 207 LLELQAKLKKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 44/171 (25%), Positives = 62/171 (36%), Gaps = 41/171 (23%)
Query: 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQ------- 958
+S R G LVG SG+GK+TL L G I G +K+
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRR 364
Query: 959 ---------------ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVME 1003
T +I E +H P ++ +D V E +E
Sbjct: 365 MQVVFQDPYGSLSPRMTVGQIIE--EGLRVHEPKLS-----------AAERDQRVIEALE 411
Query: 1004 LVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
V + + P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 412 EVGLD--PATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGG+++RV L L +DE ++ LD + +++ +R++ T+++ L
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL-- 155
Query: 405 PAPETYDL------FDDIILLSEGEIVYQG 428
+DL D +ILL +G IV QG
Sbjct: 156 -----HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 44/215 (20%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+E+L D++ V+ +LGP G GK+TLL+ ++G + SG V G +T
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTG-- 69
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
P Y+ Q D +TV + + LG+ + G +
Sbjct: 70 PGPDIGYVFQEDALLPWLTVLDNVA-----LGL--------------ELRGKSKAEARER 110
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
+ + GL ++ +SGG ++RV L K
Sbjct: 111 AKELLELVGLAGF--------------------EDKYPHQLSGGMRQRVAIARALATRPK 150
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI 399
L +DE LD+ T ++ + ++ T T++
Sbjct: 151 LLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 60/266 (22%), Positives = 99/266 (37%), Gaps = 68/266 (25%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHE 239
KRK +++ VS VK + LLGP G+GKTT + G K D SG++ G +
Sbjct: 11 GKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-----SGKILLDGQD 63
Query: 240 LTEFVP-----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294
+T+ P + Y+ Q ++TV E + LA L R
Sbjct: 64 ITKL-PMHKRARLGIGYLPQEASIFRKLTVEENI---------------LAVLEIRGLS- 106
Query: 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
K L + +L+ + +SGG+++RV
Sbjct: 107 ------------KKEREEKL------EELLEEFHITHLR-----KSKASSLSGGERRRVE 143
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTF---QIVRFMRQM---VHITDVTMIISLLQPAPE 408
L K L +DE G+D +I++ ++ V ITD E
Sbjct: 144 IARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITD--------HNVRE 195
Query: 409 TYDLFDDIILLSEGEIVYQGPREYVL 434
T + D ++ EG+++ +G E +
Sbjct: 196 TLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 56/195 (28%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L+D+S V P + +++GP G+GKTT++ ++GK+ G V + G +LT
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTG------ 68
Query: 249 CAYISQHDL-HHG------------EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
+ +H + G +TV E L+ + L LS EKD
Sbjct: 69 ---LPEHQIARAGIGRKFQKPTVFENLTVFENLELA-LPRDKSVFASLFFRLSAEEKD-- 122
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
I+ VL+ +GL AD + G +S GQK+ +
Sbjct: 123 -----RIEE------------------VLETIGLADEADRLAGL-----LSHGQKQWLEI 154
Query: 356 GEMLVGPAKALFMDE 370
G +L+ K L +DE
Sbjct: 155 GMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 48/190 (25%), Positives = 71/190 (37%), Gaps = 23/190 (12%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
+L +VS + P L+G G+GK+TLL+ L+G+ + SG VT
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGL-------- 66
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
Y+SQ E TV + + G G ELLAEL D +
Sbjct: 67 RVGYLSQEPPLDPEKTVLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELEA 121
Query: 308 ATA-MSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
+ G + L LG + +SGG ++RV L+ L
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPV------SSLSGGWRRRVALARALLEEPDLL 175
Query: 367 FMDEISTGLD 376
+DE + LD
Sbjct: 176 LLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 44/228 (19%)
Query: 202 TLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHG 260
T ++GP GSGK+TLL ++G SGRV G ++T P R + + Q +
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGT 320
+TV + + LG+ +L AE R+ + K
Sbjct: 84 HLTVEQNVG-----LGLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLP---------- 126
Query: 321 DYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 380
+SGG+++RV +LV L +DE LD +
Sbjct: 127 ----------------------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 381 FQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
+++ + + T +T+++ QP + L ++ L G I QG
Sbjct: 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 43/259 (16%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSI-------SISGYP 955
++L+++S G + ++G SGAGK+ LM VL G G I GY
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72
Query: 956 KKQETFARISGYC------EQNDIHSPNVTIYESLLYSAWLRLPK-------DMFVEEVM 1002
++ C E+ D + + + + + L + D ++ V+
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 1003 ------------------ELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044
+L+EM L + + + LS +++R+ +A +L P +
Sbjct: 133 EALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKEPFLF 190
Query: 1045 FMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103
DEPT LD + A +V + V +G ++V T H P + I + D+ ++ G +
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLEN-GEIK 248
Query: 1104 YAGPLGRQSHKLVEYFEAV 1122
G +E V
Sbjct: 249 EEGTPDEVVAVFMEGVSEV 267
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 38/211 (18%)
Query: 898 IEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG---- 953
+E+ +L+ ++ RPG + A++G +G+GK+TL LAGR+ G++ G
Sbjct: 11 VEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68
Query: 954 -----------------YPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDM 996
YP I G Q + + + R
Sbjct: 69 ELSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQD 122
Query: 997 FVEEVMELVEMKA---LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053
+EE + L++M R+ VG G ++KR I V P + +DE SGL
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNVGFSG------GEKKRNDILQMAVLEPELCILDESDSGL 176
Query: 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1084
D A IV V + D R+ + H I
Sbjct: 177 DIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 47/194 (24%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL+++S ++ L+ GP G GK+TLL+ ++ + SG + + G +++ P+
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEI 78
Query: 248 ---TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 79 YRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--AI 116
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
F+ L IL +I E+ SGG+K+R++ L K
Sbjct: 117 FLDDLERFALP--------DTILTKNI-------AEL----SGGEKQRISLIRNLQFMPK 157
Query: 365 ALFMDEISTGLDSS 378
L +DEI++ LD S
Sbjct: 158 VLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 23/193 (11%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIE----GSISISGY----- 954
Q L D++ G L+G SGAGK++L+ VL +E G+++I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 955 ----PKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW--LRLPKDMFVEEVMELVEMK 1008
K R G Q P++T+ ++L+ + L L KD + +L+E
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERL 129
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
L+ P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R
Sbjct: 130 RLKPYADRFP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
Query: 1069 VDTGRTVVCTIHQ 1081
+TG T V H+
Sbjct: 188 AETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 918 LTALVGVSGAGKTTLMDVL--------AGRKTGGYIEGSISISGYPKKQETFARISGYCE 969
+TA++G SG GK+T + + + TG + I G + + G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 970 QNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD-------G 1022
Q P +I++++ Y L D +++ E+VE K+LR + + D G
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDK--KQLEEIVE-KSLRKAALWDEVSDRLDKNALG 182
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059
LS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGYIEGSISISGYPKKQ 958
+Q L +VS G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 959 ETFARIS-GYCEQNDIHSPNVTIYESLLYSAWL-RLPKDMFVEEVMELVEMKALRNSLVG 1016
T AR G Q+ + T++ ++ L PKD +V EL+ + L +
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS 136
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
P LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 137 YPS--NLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGYIEGSISISG---YPKK 957
Q L++VS +TAL+G SG GK+T + L IEG +SI G Y
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85
Query: 958 QET--FARISGYCEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN 1012
+ + G Q PN ++IY+++ Y + ++ V+E ALR+
Sbjct: 86 VDVVELRKNVGMVFQK----PNPFPMSIYDNVAYGPRIHGANKKDLDGVVE----NALRS 137
Query: 1013 SLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
+ + D LS Q++RL IA L P II DEPTS LD + A + +
Sbjct: 138 AALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLI 197
Query: 1066 RNTVDTGRTVVCTIH 1080
N + T+V H
Sbjct: 198 MN-LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 66/203 (32%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISGYPK 956
Q+L D++ +TA +G SG GK+T + D + K ++G + I G
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGI-- 72
Query: 957 KQETFARISGYCEQNDIHSPNV---------------------TIYESLLYSAWLR-LPK 994
D++S + +IY+++ Y L L K
Sbjct: 73 ---------------DVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAK 117
Query: 995 -----DMFVEEVMELV----EMKA-LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044
D VE+ + V E+ L++S L G Q++RL IA + P+++
Sbjct: 118 NKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG------GQQQRLCIARAIAVKPTML 171
Query: 1045 FMDEPTSGLDARAAAIVMRTVRN 1067
MDEP S LD A ++ ++
Sbjct: 172 LMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 31/232 (13%)
Query: 894 KSQGIEENRLQL-LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS 952
K Q +E+ L L ++D S A G + ++G+SG+GK+T++ +L + G + I
Sbjct: 31 KEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLID 88
Query: 953 GY-------PKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMEL 1004
G + +E + Q+ P++T+ ++ + L + + E+ ++
Sbjct: 89 GVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDA 148
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+ L N P D LS R+R+ +A L NP I+ MDE S LD ++RT
Sbjct: 149 LRQVGLENYAHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALDP-----LIRT 201
Query: 1065 ------VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
V+ RT+V H D+ EA D + +M+ G V P
Sbjct: 202 EMQDELVKLQAKHQRTIVFISH----DLDEAMRIGDRIAIMQNGEVVQVGTP 249
|
Length = 400 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 47/252 (18%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTT---LLQALSGKSDKSLRVSGRVTYCGHELTEF 243
E+L +++ +KP ++GP GSGK+T LLQ L +
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-----------------------Y 507
Query: 244 VPQRTCAYISQHDLHHGE-MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
PQ + DL + +R R +GV + +L S R+ A P
Sbjct: 508 TPQHGQVLVDGVDLAIADPAWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPF 560
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
+ + A ++G D+ I L + VG E +SGGQ++R+ LVG
Sbjct: 561 EHVIHAAKLAG-----AHDF---ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGN 611
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422
+ L DE ++ LD + I+R MR++ V +I L T D II+L +G
Sbjct: 612 PRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS----TVRACDRIIVLEKG 667
Query: 423 EIVYQGPREYVL 434
+I G E +L
Sbjct: 668 QIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 51/205 (24%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ--RTCAYIS 253
V+P LLG G+GKTT + L+G + + SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
Q D +T RE L R GV P EI+
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV--------------------PAEEIEKV-------- 2050
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
++ ++ LGL + AD + G SGG K++++T L+G + +DE +T
Sbjct: 2051 ------ANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 374 GLDS-------STTFQIVRFMRQMV 391
G+D +T I+R R +V
Sbjct: 2100 GMDPQARRMLWNTIVSIIREGRAVV 2124
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 50/239 (20%)
Query: 202 TLLLGPPGSGKTTLLQALSG--KSDKS-LRVSGRVTYCGHELTEFVP-QRTCAYISQHDL 257
T + G GSGKTTL++ ++G + D+ + ++GR + + P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTS 317
++VR L + G + R + I +
Sbjct: 86 LFPHLSVRGNLRY-------GMKRA-------RPSERRISFER----------------- 114
Query: 318 LGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDS 377
V+++LG+ + G +SGG+K+RV G L+ + L MDE LD
Sbjct: 115 -----VIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 378 STTFQIVRFMRQMVHITDVTMI-IS-LLQPAPETYDLFDDIILLSEGEIVYQGPREYVL 434
++I+ ++ ++ + ++ +S LQ E L D +++L +G + GP V
Sbjct: 165 PRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 47/216 (21%), Positives = 79/216 (36%), Gaps = 49/216 (22%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT 241
K +L VS + + ++G GSGK+TLL L G + + SG V + G L+
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLS 70
Query: 242 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRF-ELLAELSRREKDA------ 294
+++ E + LG +F LL + + E A
Sbjct: 71 -------------------KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111
Query: 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
+A +A M L+ +GL+ N +SGG+++RV
Sbjct: 112 KKSVK---EAKERAYEM------------LEKVGLEHRI-----NHRPSELSGGERQRVA 151
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQM 390
LV + DE + LD++ I M ++
Sbjct: 152 IARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 44/235 (18%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQ 254
V + +LGP G+GK+TLL ++G SG + G + T P +R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGL 314
+ +TV + + LG+ +L AE +REK + F+K L
Sbjct: 79 ENNLFAHLTVAQNIG-----LGLSPGLKLNAE--QREKVEAAAAQVGLAGFLKR-----L 126
Query: 315 KTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTG 374
L SGGQ++RV LV L +DE +
Sbjct: 127 PGEL---------------------------SGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 375 LDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429
LD + +++ + Q+ +T+++ P + + D ++ L G I QG
Sbjct: 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 43/193 (22%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-- 245
+L +V+ + + L+GP G GK+TLL + G +G + L +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 246 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
QR + Q L ++V + L F+ + + +A
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA------------------------LPATLKGNAR 111
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
A + L+ GLD + +SGGQ+ RV L+ KA
Sbjct: 112 RNA-----------ANAALERSGLDGAFH-----QDPATLSGGQRARVALLRALLAQPKA 155
Query: 366 LFMDEISTGLDSS 378
L +DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 37/252 (14%)
Query: 177 RLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236
++F + ++ L++VS V ++ ++G G+GK+TL++ ++ + SG V
Sbjct: 9 KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVD 65
Query: 237 GHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
G +LT +S +L + G F+ LS R +
Sbjct: 66 GQDLTT---------LSNSELTKARRQI-------------GMIFQHFNLLSSRTVFGNV 103
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
E+D T +K + +L ++GL D N +SGGQK+RV
Sbjct: 104 ALPLELDN----TPKDEIKRKVTE--LLALVGLGDKHDSYPSN-----LSGGQKQRVAIA 152
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416
L K L DE ++ LD +TT I+ ++++ +T I+ + + D +
Sbjct: 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT-ILLITHEMDVVKRICDCV 211
Query: 417 ILLSEGEIVYQG 428
++S GE++ QG
Sbjct: 212 AVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 23/161 (14%)
Query: 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK--KQETF-ARISGYCEQNDI- 973
+TA++G SG GK+T + L +EG + + G Q + RI+ + I
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 974 ---HSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD------ 1021
PN ++IYE++ Y +R+ + ++ E+VE AL+ + + D
Sbjct: 92 MVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVE-SALKGAALWQEVKDKLNKSA 148
Query: 1022 -GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 149 LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGR------KTGGYIEGSISISGY--PKKQETFARIS 965
R G + LVG +G GK+T + +LAG+ K + + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 966 GYCEQNDIHSPNVTIYESLLYSAW------LRLPKDM--FVEEVMELVEMKALRNSLVGL 1017
+ I P Y L+ A L KD ++E+++ +E++ + +
Sbjct: 84 EG-DVKVIVKPQ---YVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR---- 135
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
+D LS + +R+ IA L + F DEP+S LD + R +R + V+
Sbjct: 136 -NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194
Query: 1078 TIHQPSI 1084
H ++
Sbjct: 195 VEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 23/152 (15%)
Query: 922 VGVSGAGKTTLMDVLAGRK--TGG--YIEGSISISGYPKKQETFARISGYCEQNDIHSPN 977
VG SG GK+TL+ ++AG + T G +I G ++ P + R G Q+ P+
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE----RGVGMVFQSYALYPH 89
Query: 978 VTIYESLLYSAWLRLPK------DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031
+++ E++ S L+L + V +V E++++ L L P LS QR+R+
Sbjct: 90 LSVAENM--SFGLKLAGAKKEEINQRVNQVAEVLQLAHL---LDRKP--KALSGGQRQRV 142
Query: 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
I LVA PS+ +DEP S LDA A + MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 53/261 (20%), Positives = 110/261 (42%), Gaps = 39/261 (14%)
Query: 176 LRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY 235
L LF KK + L D++ ++ +++T L+G G GK+T L+ + +DK ++ G V
Sbjct: 8 LNLFYGKK---QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI 64
Query: 236 CGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
G + + D+ + +R+ VG F+ + +
Sbjct: 65 EGKD------------VKNQDV----VALRKN---------VGMVFQQPNVFVKSIYE-N 98
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
I P++ +K + +L D + K+ + D + N + +SGGQ++R+
Sbjct: 99 ISYAPKLHGMIKN---KDEEEALVVDCLQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCI 153
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL--- 412
L K L +DE ++ LD ++ I ++++ H + M+ +Q D
Sbjct: 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAF 213
Query: 413 --FDDIILLSEGEIVYQGPRE 431
++I E + ++ P++
Sbjct: 214 FHLGELIEFGESKEFFENPKQ 234
|
Length = 246 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGYIEGSISISGYPKKQET 960
Q+L ++ G + ++G SG+GK+TL+ + L +G I + ++ PK E
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDER 73
Query: 961 FARI-SGYCEQNDIHSPNVTIYESLLYSAW--LRLPKDMFVEEVMELVEMKALRNSLVGL 1017
R +G Q P++T E++++ K+ ++ EL+ L
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHY 133
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
P LS Q++R+ IA L P ++ DEPTS LD V++ +++ + G T+V
Sbjct: 134 PS--ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVI 191
Query: 1078 TIHQ 1081
H+
Sbjct: 192 VTHE 195
|
Length = 240 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQET 960
Q LQ V+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 961 FARIS-GYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLP 1018
F R G Q+ + T+Y+++ + D V ++ L + P
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
LS +++R+ IA +V P+++ DEPT LD + ++R G TV+
Sbjct: 136 --IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMA 193
Query: 1079 IH 1080
H
Sbjct: 194 TH 195
|
Length = 222 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 12/232 (5%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ 958
+E+ + L VS + G +++G +G+GK+T ++ G EG + I G
Sbjct: 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTA 73
Query: 959 ET---FARISGYCEQN-DIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNS 1013
E R G QN D T+ + + + + +P++ ++ V E + + +
Sbjct: 74 ENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF 133
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1073
P LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 134 KTREPA--RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ 191
Query: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP--LGRQSHKLVEYFEAVP 1123
V +I +D + D + +MK G + A P L S +VE VP
Sbjct: 192 LTVLSITH-DLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVP 242
|
Length = 277 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 53/216 (24%), Positives = 90/216 (41%), Gaps = 57/216 (26%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
++L+D+S +F PG ++G++GAGK+TL+ ++AG +G +
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFNGEARPAPGIKV 70
Query: 964 ISGYCEQNDIHSPNVTIYESL----------------LYSAWLRLPKDM--FVEEVMELV 1005
GY Q P T+ E++ + + + DM + E EL
Sbjct: 71 --GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 1006 E-----------------MKALRNSLVGLPG----VDGLSTEQRKRLTIAVELVANPSII 1044
E M ALR P V LS +R+R+ + L++ P ++
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALR-----CPPWDADVTKLSGGERRRVALCRLLLSKPDML 183
Query: 1045 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
+DEPT+ LDA + A + + ++ G TVV H
Sbjct: 184 LLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYP-KKQ-ET 960
L +S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRDE 71
Query: 961 FARISGYC-EQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPG 1019
+ + Y Q I +T E+L + L P D +E + +AL VGL G
Sbjct: 72 YHQDLLYLGHQPGI-KTELTALENLRFYQRLHGPGD---DEAL----WEALAQ--VGLAG 121
Query: 1020 -----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1074
V LS Q++R+ +A + + +DEP + +D + A + + + G
Sbjct: 122 FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM 181
Query: 1075 VVCTIHQP 1082
V+ T HQ
Sbjct: 182 VILTTHQD 189
|
Length = 204 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 51/186 (27%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETF--- 961
LL+D+S +PG + G SG GK++L LAG + G I G P+ ++
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRI---GMPEGEDLLFLP 70
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD 1021
R Y P T+ E L+Y W +
Sbjct: 71 QR--PYL-------PLGTLREQLIY-PWDDV----------------------------- 91
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081
LS +++RL A L+ P +F+DE TS LD + + + ++ + G TV+ H+
Sbjct: 92 -LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHR 147
Query: 1082 PSIDIF 1087
PS+ F
Sbjct: 148 PSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 54/261 (20%), Positives = 102/261 (39%), Gaps = 51/261 (19%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG--- 237
S K +L D++ +KP ++GP G+GKTTL+ L D G++ G
Sbjct: 11 SYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDI 67
Query: 238 HELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIK 297
+++ + + Q +T FS GT E + L R
Sbjct: 68 RDISRKSLRSMIGVVLQ-----------DTFLFS------GTIMENIR-LGRPNAT---- 105
Query: 298 PDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
D E+ K L Y D ++G E +S G+++ +
Sbjct: 106 -DEEVIEAAKEAGAHDFIMKLPNGY-----------DTVLG-ENGGNLSQGERQLLAIAR 152
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI---ISLLQPAPETYDLFD 414
++ K L +DE ++ +D+ T I + +++ +I +S ++ A D
Sbjct: 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA-------D 205
Query: 415 DIILLSEGEIVYQGPREYVLD 435
I++L +G+I+ +G + +L
Sbjct: 206 KILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 176 LRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK--SLRVSGRV 233
L L+ K L D++ + +++T L+GP G GK+TLL+ L+ +D RV G V
Sbjct: 13 LNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV 69
Query: 234 TYCGHELTE 242
G + +
Sbjct: 70 LLDGKNIYD 78
|
Length = 253 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-05
Identities = 59/243 (24%), Positives = 94/243 (38%), Gaps = 55/243 (22%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS-- 253
++P + L+G GSGK+T+ + ++G SG + + G E + ++
Sbjct: 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMV 558
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
D+ E TVR+ L + A+L R KDA I T+ G
Sbjct: 559 DQDIFLFEGTVRDNLTLWDPTI-------PDADLVRACKDAAIHDV--------ITSRPG 603
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
G D L E +SGGQ++R+ LV L +DE ++
Sbjct: 604 -----GYDAELA--------------EGGANLSGGQRQRLEIARALVRNPSILILDEATS 644
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMII-----SLLQPAPETYDLFDDIILLSEGEIVYQG 428
LD T I +R+ T II S ++ D+II+L G++V +G
Sbjct: 645 ALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDC-------DEIIVLERGKVVQRG 693
Query: 429 PRE 431
E
Sbjct: 694 THE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 176 LRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRV 233
L ++ +KK + L+ VS P+ +T L+GP GSGK+TLL++++ +D + ++G +
Sbjct: 11 LSVYYNKK---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 234 TYCGHEL----TEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSR 289
Y GH + T+ V R + + M++ E + + R G+ + L + +
Sbjct: 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK 127
Query: 290 REKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349
K A I E+ + +A LGL SGGQ
Sbjct: 128 SLKGASIW--DEVKDRLHDSA----------------LGL----------------SGGQ 153
Query: 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII 400
++RV +L K + +DE ++ LD + +I + + D TM++
Sbjct: 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLL 202
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 30/257 (11%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHEL----TE 242
L VS + +T L+GP G GK+T L+ L+ +D K+ R+ G V G ++
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 243 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
V R + + ++RE + + R G L L R +KDA D +
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDA---EDELV 177
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
+ ++ A+ D D + N + G+SGGQ++R+ L
Sbjct: 178 ERSLRQAAL-----------------WDEVNDRLDDNAL--GLSGGQQQRLCIARCLAVD 218
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422
+ + MDE ++ LD T +I + ++ V ++ +Q A D + L+ G
Sbjct: 219 PEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISD--QTAVFLTGG 276
Query: 423 EIVYQGPREYVLDFFES 439
E+V + + + ES
Sbjct: 277 ELVEYDDTDKIFENPES 293
|
Length = 305 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 7e-05
Identities = 49/254 (19%), Positives = 106/254 (41%), Gaps = 45/254 (17%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHEL----TE 242
L+D++ + +++T L+GP G GK+T L+ L+ +D ++++ G V G + +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 243 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
V R + + M++ + + + R G+ + EL D +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKEL---------------DKIV 124
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
+ +K A+ D D + + + +SGGQ++R+ +
Sbjct: 125 EWALKKAAL-----------------WDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVK 165
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD-----LFDDII 417
+ MDE ++ LD +T +I M ++ + ++ +Q A D L D+I
Sbjct: 166 PDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225
Query: 418 LLSEGEIVYQGPRE 431
++ E ++ P++
Sbjct: 226 EFNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-05
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 47/219 (21%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGYIEGSISISGYPKKQETFA 962
LL+DVS + G LT ++G +G+GK+TL+ L + + G + SI+ P++ A
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQ----A 730
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEE----VMELVEMKALRNSLVGLP 1018
I N T+ ++L+ F EE + + V + L L L
Sbjct: 731 WIM-----------NATVRGNILF----------FDEEDAARLADAVRVSQLEADLAQLG 769
Query: 1019 GVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
G GL TE Q+ R+++A + AN + +D+P S LDA V+
Sbjct: 770 G--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827
Query: 1068 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106
G+T V HQ + + D + + G V ++G
Sbjct: 828 GALAGKTRVLATHQ--VHVVPRADYVVALGD-GRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 7e-05
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 42/156 (26%)
Query: 919 TALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY------------PKKQETFARISG 966
TA+ G SGAGKT+L++ ++G +G I ++G P+K+ RI G
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKR----RI-G 79
Query: 967 YCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD----- 1021
Y Q+ P+ + +L Y + + M A + +V L G++
Sbjct: 80 YVFQDARLFPHYKVRGNLRYG----------MAKS-----MVAQFDKIVALLGIEPLLDR 124
Query: 1022 ---GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 125 YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-05
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGGQK+RV +L + + DE ++ LD +I + M + T +IS+
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKT-LISI-- 199
Query: 405 PAPETYD-----LFDDIILLSEGEIVYQG-PRE 431
T+D L D +I+ SEG+++ QG P+E
Sbjct: 200 ----THDMDEAILADKVIVFSEGKLIAQGKPKE 228
|
Length = 271 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-05
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 43/187 (22%)
Query: 897 GIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKT----TLMDVLAGRKTGGYIEGSI--- 949
E ++ ++ +S G ALVG SG+GK+ +++ +L + GSI
Sbjct: 17 HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFD 75
Query: 950 --SISGYPKKQETFARISGYCEQNDIH----------SPNVTIYESL--LYSAWLRLPKD 995
+ ++Q + G N I +P TI + L + L +
Sbjct: 76 GEDLLAASERQ--LRGVRG----NKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRA 129
Query: 996 MFVEEVMELVEMKALRNSLVGLPGVDG--------LSTEQRKRLTIAVELVANPSIIFMD 1047
+EL+E LVG+P + LS QR+R+ IA+ L P ++ D
Sbjct: 130 AARARALELLE-------LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIAD 182
Query: 1048 EPTSGLD 1054
EPT+ LD
Sbjct: 183 EPTTALD 189
|
Length = 534 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-05
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 893 MKSQGIEENRLQ--LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSIS 950
++S G+ + ++ +L++++ +PG + A+VG SGAGKTTL+ ++ G + G E
Sbjct: 384 LESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRP 443
Query: 951 ISGYPK--KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMK 1008
SG + K A I G E E + D+ E++
Sbjct: 444 DSGKVEVPKNTVSALIPGEYEP--------EFGEVTILEHLRSKTGDLNAAV--EILNRA 493
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
L ++++ LST Q++R +A L P+++ +DE + LD A V R +
Sbjct: 494 GLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553
Query: 1069 V-DTGRTVVCTIHQPSI 1084
+ G T++ H+P +
Sbjct: 554 AREAGITLIVVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 69/292 (23%)
Query: 157 ALPTLLNTSLNAIEGVLGFLRLFPSKK-----RKLEIL-HDVSGIVKPSRMTL------- 203
+L T L T L + G L + LEIL D + P TL
Sbjct: 323 SLVTFLETPLAHPQQ--GEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIA 380
Query: 204 LLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQ---RTCAYISQH-DL 257
L+GP G+GKT+LL AL G SL+++G EL E P+ + +++ Q+ L
Sbjct: 381 LVGPSGAGKTSLLNALLGFLPYQGSLKING------IELRELDPESWRKHLSWVGQNPQL 434
Query: 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTS 317
HG T+R+ + LL PD + +A + +
Sbjct: 435 PHG--TLRDNV--------------LLG-----------NPDASDEQLQQALENAWVS-- 465
Query: 318 LGTDYVLKI-LGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLD 376
+++ + GLD +G + G+S GQ +R+ L+ P + L +DE + LD
Sbjct: 466 ---EFLPLLPQGLDT----PIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517
Query: 377 SSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
+ + +++ + M+ L+ + +D I ++ +G+IV QG
Sbjct: 518 AHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 76/250 (30%)
Query: 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDL 257
S +T L+G G GK+TL LSG LR PQ+ L
Sbjct: 26 LSPVTGLVGANGCGKSTLFMNLSGL----LR----------------PQKGAV------L 59
Query: 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTS 317
G+ LD+S R L L+ R++ A + DPE F T
Sbjct: 60 WQGK-----PLDYSKRGL-----------LALRQQVATVFQDPEQQIFY---------TD 94
Query: 318 LGTD--YVLKILGL---------DICADIMVGNEMRRG----ISGGQKKRVTTGEMLVGP 362
+ +D + L+ LG+ D ++ R +S GQKKRV LV
Sbjct: 95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMV----HITDVTMIISLLQPAPETYDLFDDIIL 418
A+ L +DE + GLD + Q++ +R++V H+ + I L+ Y++ D + +
Sbjct: 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYV 208
Query: 419 LSEGEIVYQG 428
L +G+I+ G
Sbjct: 209 LRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 61/244 (25%), Positives = 100/244 (40%), Gaps = 62/244 (25%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE-FVPQRTCAYISQ 254
+K M LLGP G GKTT+L+ ++G + G++ G ++T + QR + Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQ 85
Query: 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGL 314
M++ E + + + LGV E +R K+A
Sbjct: 86 SYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA-------------------- 120
Query: 315 KTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTG 374
L+++ L D V ISGGQ++RV L+ K L DE +
Sbjct: 121 ---------LELVDLAGFEDRYVDQ-----ISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 375 LDSSTTFQIVRFMR-------QMVHITD--VTMIISLLQPAPETYDLFDDIILLSEGEIV 425
LD++ + R MR Q +IT VT S E + + D +I++++G+I+
Sbjct: 167 LDAN----LRRSMREKIRELQQQFNITSLYVTHDQS------EAFAVSDTVIVMNKGKIM 216
Query: 426 YQGP 429
G
Sbjct: 217 QIGS 220
|
Length = 351 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG----YIEGSISISG---YPK 956
+ L +S F LTAL+G SG GK+T + L R I G I G Y
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGS 76
Query: 957 KQETFA--RISGYCEQNDIHSPNVTIYESLLYSAWLRLP----KDMFVEEVMELVEMKAL 1010
K + + G Q P ++Y+++ Y L++ K++ + V E ++ A+
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAI 133
Query: 1011 ---------RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
RN+ S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 134 WKETKDNLDRNA-------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186
Query: 1062 MRTV 1065
T+
Sbjct: 187 EETL 190
|
Length = 251 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGYIEGSISISGYPKKQETFARI 964
L D+S + G TAL+G +G+GK+T+ ++ G I++ G +T I
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82
Query: 965 S---GYCEQN-DIHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVG 1016
G QN D T+ + + + R +P+ V +V+ V M +S
Sbjct: 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-- 140
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 1075
P LS Q++R+ IA L P II +DE TS LD +++ +R TV
Sbjct: 141 -PA--NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTV 197
Query: 1076 VCTIHQPSIDIFEA 1089
+ H DI EA
Sbjct: 198 ISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQET 960
L L +++ G LT +VG G GK++L+ + G + G + S P + T
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73
Query: 961 FARISGYCEQNDIHSP---NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL----RNS 1013
+R + Y P N T+ E++ + + + V + L L +
Sbjct: 74 RSR-NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQT 132
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDT 1071
+G G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D
Sbjct: 133 EIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 1072 GRTVVCTIHQ 1081
RT+V H+
Sbjct: 192 KRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L++++ + G ++G +G+GK+TL L G R G + S +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 964 ISGYCEQN-DIHSPNVTIYESLLYSAWLRLPKDMFVE--EVMELVEMKALRNSLVGLP-- 1018
+ G QN + T+ E L + P+++ + E+ + V+ AL +GL
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFG-----PENLCLPPIEIRKRVDR-ALAE--IGLEKY 129
Query: 1019 ---GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
LS Q + + +A L P + DE TS LD + V+ ++ + G+T+
Sbjct: 130 RHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTI 189
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
V H +++ D + +M RG V+ P
Sbjct: 190 VYITH--NLEELHDADRIIVMDRGKIVLEGEP 219
|
Length = 274 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H P
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
Query: 1083 SI 1084
+
Sbjct: 205 QV 206
|
Length = 648 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 1e-04
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 27/175 (15%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGG--YIEGSISISGY 954
+L D++ + +TA +G SG GK+T + D++ G G Y G+ + S
Sbjct: 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155
Query: 955 PKKQETFARISGYCEQNDIHSP-NVTIYESLLYSAWLRLPKDMFVEE--VMELVEMKALR 1011
E RI ++ +P ++I++++ Y P++ + + ++E + K+L+
Sbjct: 156 ISSLELRTRIGMVFQKP---TPFEMSIFDNVAYG-----PRNNGINDRKILEKIVEKSLK 207
Query: 1012 NSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059
++ + D LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 208 SAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 30/191 (15%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQE 959
++Q L +VS G + L+G +GAGKTTL+ L G R T G I G
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT----SGRIVFDGKDITDW 72
Query: 960 TFARI-----SGYCEQNDIHSPNVTIYESLLYSAWL--RLPKDMFVEEVMELV----EMK 1008
A+I + E + S +T+ E+L + R ++ V EL E +
Sbjct: 73 QTAKIMREAVAIVPEGRRVFS-RMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERR 131
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
R +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T
Sbjct: 132 IQRAGT--------MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDT 179
Query: 1069 VDTGRTVVCTI 1079
++ R TI
Sbjct: 180 IEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 47/177 (26%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISG---YP 955
+++V +TA +G SG GK+T++ D++ G + +EG ++ G Y
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR----VEGKVTFHGKNLYA 81
Query: 956 KK---QETFARISGYCEQNDIHSPN---VTIYESLLYSAWLRLPK-DMFVEEVMELVEMK 1008
E RI G Q PN +IY+++ Y A + K DM ELVE +
Sbjct: 82 PDVDPVEVRRRI-GMVFQK----PNPFPKSIYDNIAYGARINGYKGDM-----DELVE-R 130
Query: 1009 ALRNSLV-----------GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
+LR + + GL LS Q++RL IA + P +I MDEP S LD
Sbjct: 131 SLRQAALWDEVKDKLKQSGL----SLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-04
Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG--YPKKQETFA- 962
++DVS R G + + G+ GAG+T L L G + G I + G + A
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAI 332
Query: 963 -----------RISGYCEQNDIHSPNVTIYESLLYSAWLRLP---KDMFVEEVMELVEMK 1008
+ G I + N+T+ +S + + E + + +K
Sbjct: 333 KAGIAYVPEDRKSEGLVLDMSI-AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK 391
Query: 1009 ALR-NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
+G LS ++++ +A L +P ++ +DEPT G+D A A + R +R
Sbjct: 392 TPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446
Query: 1068 TVDTGRTVV 1076
G+ ++
Sbjct: 447 LAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 71/256 (27%), Positives = 106/256 (41%), Gaps = 66/256 (25%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ- 246
IL DVS ++P ++GP GSGK+TLL+ L G + SG V Y G +L Q
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG-FETP--ESGSVFYDGQDLAGLDVQA 524
Query: 247 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
R + Q+ GR L G+ FE +A A + D +A
Sbjct: 525 VRRQLGVVLQN----------------GR-LMSGSIFENIA------GGAPLTLD---EA 558
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIM----VGNEMRRGISGGQKKRVTTGEMLV 360
+A M+GL DI A M V +E +SGGQ++R+ LV
Sbjct: 559 -WEAARMAGLAE-------------DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII-----SLLQPAPETYDLFDD 415
+ L DE ++ LD+ T + + ++ VT I+ S ++ A D
Sbjct: 605 RKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNA-------DR 653
Query: 416 IILLSEGEIVYQGPRE 431
I +L G +V QG +
Sbjct: 654 IYVLDAGRVVQQGTYD 669
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 64/276 (23%), Positives = 109/276 (39%), Gaps = 48/276 (17%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYCGHELTEFVP 245
L D+ VK T L+G GSGK+TLLQ L+G ++ + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 246 -QRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
++ + Q + E TV + + F + G+ + EK A K +
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE--------KAEKIAAEKLE---- 129
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
M GL ++ SGGQ +RV +L
Sbjct: 130 -------MVGLADEFWEKSPFEL-------------------SGGQMRRVAIAGILAMEP 163
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+ L +DE + GLD ++++ + +H + T+++ + + D D + LL +G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLF-ESIHQSGQTVVL-VTHLMDDVADYADYVYLLEKGH 221
Query: 424 IVYQGPREYV---LDFFESVGFRCPERKGAADFLQE 456
I+ G V +DF ++ P+ AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 55/245 (22%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTT---LLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+L DVS + P +T L+GP GSGK+T LL+ G+V G ++++
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG------GQVLLDGKPISQY- 81
Query: 245 PQRTCAYISQHDLHHGEMTV--RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
+H H ++++ +E + F+ S ++ A
Sbjct: 82 ---------EHKYLHSKVSLVGQEPVLFAR---------------SLQDNIAYGLQSCSF 117
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
+ +A + + I L D VG E +SGGQK+RV L+
Sbjct: 118 ECVKEAAQKAHAHSF--------ISELASGYDTEVG-EKGSQLSGGQKQRVAIARALIRN 168
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI---ISLLQPAPETYDLFDDIILL 419
+ L +DE ++ LD+ + Q+ + + V +I +S ++ A D I++L
Sbjct: 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERA-------DQILVL 221
Query: 420 SEGEI 424
G I
Sbjct: 222 DGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 53/254 (20%), Positives = 101/254 (39%), Gaps = 66/254 (25%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+L + VK + +++GP GSGK+TLL+ ++ + SG + G +LT+
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDK 68
Query: 245 PQ-----RTCAYISQH-DL--HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
+ + Q +L H +TV E + LA + +
Sbjct: 69 KNINELRQKVGMVFQQFNLFPH---LTVLENI--------------TLAPIKVKGM---- 107
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
+ +A + A+ +L+ +GL AD +SGGQ++RV
Sbjct: 108 ---SKAEA--EERAL----------ELLEKVGLADKADAYPAQ-----LSGGQQQRVAIA 147
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-F-- 413
L K + DE ++ LD +++ M+ + +TM++ T+++ F
Sbjct: 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVV-------THEMGFAR 199
Query: 414 ---DDIILLSEGEI 424
D +I + +G I
Sbjct: 200 EVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 49/204 (24%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
++LH+VS + M ++G GSGK+TLL L G + SG V + G ++
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMS----- 74
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRF-ELLAELSRREKDA------GIKPD 299
+++ + + LG +F LL + + E A KP
Sbjct: 75 --------------KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA 120
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
+ +A M L +GL+ N +SGG+++RV L
Sbjct: 121 ---EINSRALEM------------LAAVGLE-----HRANHRPSELSGGERQRVAIARAL 160
Query: 360 VGPAKALFMDEISTGLDSSTTFQI 383
V + + DE + LD+ I
Sbjct: 161 VNNPRLVLADEPTGNLDARNADSI 184
|
Length = 233 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-04
Identities = 58/257 (22%), Positives = 101/257 (39%), Gaps = 70/257 (27%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV----SGRVTYCGHELTEF 243
+L ++S +KP ++G GSGK++LL AL R+ SG + G ++++
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL-------FRLVELSSGSILIDGVDISKI 71
Query: 244 VPQ--RTC-AYISQHD--LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
R+ + I Q D L G T+R LD G
Sbjct: 72 GLHDLRSRISIIPQ-DPVLFSG--TIRSNLDPFGEY-----------------------S 105
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM 358
D E+ +A GLK + + GLD + G E +S GQ++ +
Sbjct: 106 DEEL---WQALERVGLKEFVES----LPGGLD--TVVEEGGE---NLSVGQRQLLCLARA 153
Query: 359 LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII------SLLQPAPETYDL 412
L+ +K L +DE + +D T I + +R+ D T++ +++
Sbjct: 154 LLRKSKILVLDEATASVDPETDALIQKTIRE--AFKDCTVLTIAHRLDTIID-------- 203
Query: 413 FDDIILLSEGEIVYQGP 429
D I++L +G +V
Sbjct: 204 SDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 49/182 (26%), Positives = 67/182 (36%), Gaps = 47/182 (25%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEFVPQRTCAYISQ 254
V L+ G G+GKTTLL+ L+G L V SG++ G T R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAG----LLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGL 314
+++ E L F L RR K M +A
Sbjct: 90 LPGLKADLSTLENLHF------------LCGLHGRRAKQ------------MPGSA---- 121
Query: 315 KTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTG 374
L I+GL D +V R +S GQKKR+ + + PA +DE
Sbjct: 122 ---------LAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 375 LD 376
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-04
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 39/208 (18%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR-----KTGGYIEGSISISGYPKKQET 960
L D++ G L A+VG +G GKT+L+ + G + I GS++ P+
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYV--PQVSWI 690
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
F N T+ E++L+ + D E +++ AL++ L LPG
Sbjct: 691 F---------------NATVRENILFGS------DFESERYWRAIDVTALQHDLDLLPGR 729
Query: 1021 D---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
D +S Q++R+++A + +N I D+P S LDA A V +
Sbjct: 730 DLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK 789
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
G+T V +Q + D + L+ G
Sbjct: 790 GKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY-----IEGSISISGYPKKQE 959
+L+D++ + ++G SG+GK+TL+ VL R Y ++G + G Q
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQI 83
Query: 960 TFARIS---GYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVG 1016
++ G Q P+++IY+++ Y K+ E+ ++VE + LR VG
Sbjct: 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEK--REIKKIVE-ECLRK--VG 138
Query: 1017 L---------PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
L LS Q++RLTIA L P ++ MDEPTS +D + + + +
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-T 197
Query: 1068 TVDTGRTVVCTIHQP 1082
+ +V H P
Sbjct: 198 ELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 3e-04
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIIS--LL 403
SGG K+R+ + L+ + L +DE ++GLD + + +R++ T+++S +L
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHIL 155
Query: 404 QPAPETYDLFDDIILLSEGEI 424
+ A L D + +L+ G I
Sbjct: 156 EEAER---LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 3e-04
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI-ISLL 403
+SGGQ++R+ L+ L +DE ++ LD T I+ +R + T+I I+
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIA-- 152
Query: 404 QPAPETYDLFDDIILLSEGE 423
T D II+L +G
Sbjct: 153 -HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 49/243 (20%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVP 245
L D+S V+ + LLGP G+GKTT ++ + G D SG V + G L
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD-----SGEVLFDGKPLD-IAA 68
Query: 246 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
+ Y+ + + +M V + L + + L L + E I
Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQ----------LKGLKKEEARRRI--------- 109
Query: 306 MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKA 365
D L+ L L A+ V +S G +++V ++ +
Sbjct: 110 ---------------DEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPEL 149
Query: 366 LFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425
L +DE +GLD + +R++ T+I+S Q +L D ++LL++G V
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAV 207
Query: 426 YQG 428
G
Sbjct: 208 LYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 44/196 (22%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
L DVS + + ++LGP G GKTTLL ++G S G + G + +R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
+ Q++ + V + + F + G+ RRE
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREI--------------- 112
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
+L ++GL+ + +SGG ++RV L + L
Sbjct: 113 ------------AHQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEPQLLL 155
Query: 368 MDEISTGLDSSTTFQI 383
+DE LD+ T Q+
Sbjct: 156 LDEPFGALDALTREQM 171
|
Length = 259 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
L D++ ++ + ++LGP G GKTTLL ++G G +T G + +R
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFEL-LAELSRREKDAGIKPDPEIDAFM 306
+ Q++ G + R D F L LA + + ++
Sbjct: 73 --GVVFQNE---GLLPWRNVQD--------NVAFGLQLAGVEKMQRLE------------ 107
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR--GISGGQKKRVTTGEMLVGPAK 364
A M LK +GL+ G E R +SGGQ++RV L +
Sbjct: 108 IAHQM------------LKKVGLE-------GAEKRYIWQLSGGQRQRVGIARALAANPQ 148
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHIT 394
L +DE LD+ T Q+ + ++ T
Sbjct: 149 LLLLDEPFGALDAFTREQMQTLLLKLWQET 178
|
Length = 255 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 20/187 (10%)
Query: 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG---YPKKQ-ETFA 962
+D+S + G + G+ G+G+T LM+ L G G I ++G P+ +
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVK 337
Query: 963 RISGYCEQNDIHS---PNVTIYESLLYSAWLRLPKDM----FVEEVMELV------EMKA 1009
+ Y ++ + PN +I +++ S L+ EV E E+ A
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
L+ V + LS ++++ I+ L P +I DEPT G+D A A + + +R
Sbjct: 398 LKCHSVN-QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA 456
Query: 1070 DTGRTVV 1076
D G+ ++
Sbjct: 457 DDGKVIL 463
|
Length = 510 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 63/266 (23%), Positives = 109/266 (40%), Gaps = 66/266 (24%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHE 239
KKRK +++DVS V + LLGP G+GKTT + G + D SG++ +
Sbjct: 15 KKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-----SGKILLDDED 67
Query: 240 LTEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
+T+ + Y+ Q ++TV + ++A L REKD
Sbjct: 68 ITKLPMHKRARLGIGYLPQEASIFRKLTVEDN---------------IMAVLEIREKDLK 112
Query: 296 IKPD-PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
E+DA ++ ++ L+ S Y L SGG+++RV
Sbjct: 113 KAERKEELDALLEEFHITHLRDSKA--YSL---------------------SGGERRRVE 149
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTF---QIVRFMRQM---VHITDVTMIISLLQPAPE 408
L K + +DE G+D +I++ ++ V ITD E
Sbjct: 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITD--------HNVRE 201
Query: 409 TYDLFDDIILLSEGEIVYQGPREYVL 434
T D+ D ++S+G+++ +G E ++
Sbjct: 202 TLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 38/247 (15%)
Query: 180 PSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239
P +KR + DVS ++ + + G G+G+T L+QAL G + G V G
Sbjct: 271 PHRKR----VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG--KFEGNVFINGKP 324
Query: 240 LTEFVPQRTCAYISQHDLHHGEMTVRETLDFSG--RCLGVGTRFELLAELSRREKDAGIK 297
V R A + G V E G LGVG L + L I
Sbjct: 325 ----VDIRNPA----QAIRAGIAMVPEDRKRHGIVPILGVGKNITL-SVLKSFCFKMRID 375
Query: 298 PDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
E+ A +KT+ + +G +SGG +++ +
Sbjct: 376 AAAELQIIGSAIQRLKVKTA--------------SPFLPIG-----RLSGGNQQKAVLAK 416
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
ML+ + L +DE + G+D ++I + + Q+ +++S E L D ++
Sbjct: 417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS--SELAEVLGLSDRVL 474
Query: 418 LLSEGEI 424
++ EG++
Sbjct: 475 VIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 61/258 (23%), Positives = 95/258 (36%), Gaps = 71/258 (27%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
K++ LH+VS + + L+G G+GKTTLL L G + SGR+ + G ++T++
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQ 73
Query: 245 PQR----TCAYISQHDLHHGEMTVRETLDFSG----------RCLGVGTRFELLAELSRR 290
+ A + + MTV E L G R V F L E RR
Sbjct: 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE--RR 131
Query: 291 EKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQK 350
+ AG +SGG++
Sbjct: 132 IQRAGT------------------------------------------------MSGGEQ 143
Query: 351 KRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL-QPAPET 409
+ + G L+ + L +DE S GL QI + Q+ + M I L+ Q A +
Sbjct: 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL---REQGMTIFLVEQNANQA 200
Query: 410 YDLFDDIILLSEGEIVYQ 427
L D +L G +V +
Sbjct: 201 LKLADRGYVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 998 VEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057
V E +ELV M+ + P LS Q++R+ IA + P II +DE TS LD
Sbjct: 121 VNEALELVGMQDFKERE---PA--RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175
Query: 1058 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+++T++ D TV+ H +D D + +MK G
Sbjct: 176 RLELIKTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 37/187 (19%)
Query: 892 EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGY 944
E+K I + + D+S +TAL+G SG GK+T + D++ ++ G
Sbjct: 23 EVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGE 82
Query: 945 I--EGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY----ESLLYSAWLR------- 991
I EG ++I R G Q P +IY +L Y+ R
Sbjct: 83 ILYEG-LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEI 140
Query: 992 ----LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1047
L K +EV + + AL LS Q++RL IA L P+++ +D
Sbjct: 141 VEESLTKAALWDEVKDRLHSSAL-----------SLSGGQQQRLCIARTLAMKPAVLLLD 189
Query: 1048 EPTSGLD 1054
EP S LD
Sbjct: 190 EPASALD 196
|
Length = 268 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 51/182 (28%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA---GRKTGGYIEGSISISGYPKKQET 960
+ ++ + F +TAL+G SG+GK+T + L + G I G
Sbjct: 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI------ 87
Query: 961 FARISGYCEQNDIHSPNV---------------------TIYESLLYSAWLRLPKDMFVE 999
DI+ + +IYE++ ++ KD +
Sbjct: 88 -----------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDK--K 134
Query: 1000 EVMELVEMKALRNSLVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052
+ E+VE +L+ + + D LS Q++RL IA + P I+ MDEP S
Sbjct: 135 VLDEIVE-TSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA 193
Query: 1053 LD 1054
LD
Sbjct: 194 LD 195
|
Length = 267 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 29/202 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI----EGSISISGYPKKQETF 961
L+DVS G L+G +GAGK+TL+ +LAG I G++++ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWL--RLPKDM--FVEEVMELVEMKALRNSLVGL 1017
R+S +P +T E++ + L K++ ++E++E E+ + L
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID----L 138
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
P V S+ + RL A+ P I+ +DE + DA R +R + G+TV+
Sbjct: 139 P-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL 197
Query: 1078 TIHQPSIDIFEAFDELFLMKRG 1099
H PS I D ++++G
Sbjct: 198 VSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 77/262 (29%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEFVPQR 247
L D S V + L+G GSGK+TL +AL G +R+ SG+++ G + + +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMG----FVRLASGKISILGQPTRQALQKN 78
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAE------------LSRREKDAG 295
AY+ Q E +D+S F +L E RR K
Sbjct: 79 LVAYVPQ----------SEEVDWS---------FPVLVEDVVMMGRYGHMGWLRRAK--- 116
Query: 296 IKPDPEI-DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
K D +I A + M ++ + +G +SGGQKKRV
Sbjct: 117 -KRDRQIVTAALARVDMV--------EFRHRQIG---------------ELSGGQKKRVF 152
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-- 412
+ + + +DE TG+D T +I+ +R++ TM++S T++L
Sbjct: 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVS-------THNLGS 204
Query: 413 ---FDDIILLSEGEIVYQGPRE 431
F D ++ +G ++ GP E
Sbjct: 205 VTEFCDYTVMVKGTVLASGPTE 226
|
Length = 272 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 59/277 (21%)
Query: 178 LFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG 237
K++ +L +VS ++ LLG G GK+TL + L G + G V++ G
Sbjct: 16 GLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRG 72
Query: 238 HELTEFVP------QRTCAYISQHDLH--HGEMTVRETLDFSGRCLGVGTRFELLAELSR 289
+L + +R + Q + MTVR+ + G L L
Sbjct: 73 QDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII---------GEPLRHLTSLDE 123
Query: 290 REKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349
E+ A + + L ++GL ++ +++ R +SGGQ
Sbjct: 124 SEQKA------------RIAEL------------LDMVGLR--SEDA--DKLPRQLSGGQ 155
Query: 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQM-----VHITDVTMIISLLQ 404
+R+ L K + +DE + LD I+ +R++ +T + L+Q
Sbjct: 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQ 215
Query: 405 PAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVG 441
+ ++ +G+IV + +L F G
Sbjct: 216 ------SFCQRVAVMDKGQIVEECDVAQLLSFKHPAG 246
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-04
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 59/208 (28%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQH 255
V+P L+ G G+GKT+LL+AL+G SGR++ F+PQR Y+ Q
Sbjct: 416 VRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMPADSALLFLPQRP--YLPQ- 469
Query: 256 DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLK 315
GT L E A D E+ A + + L
Sbjct: 470 ----------------------GT----LREALCYPNAAPDFSDAELVAVLHKVGLGDLA 503
Query: 316 TSLGT----DYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEI 371
L D VL SGG+++R+ +L+ K +F+DE
Sbjct: 504 ERLDEEDRWDRVL---------------------SGGEQQRLAFARLLLHKPKWVFLDEA 542
Query: 372 STGLDSSTTFQIVRFMRQMVHITDVTMI 399
++ LD T ++ + +++ + D T+I
Sbjct: 543 TSALDEETEDRLYQLLKEE--LPDATVI 568
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL--RVSGRVTYCGHELTEFVP 245
+L D+S +KP L+ GP G+GK++L +AL+G L SGR+ E F+P
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-----LWPWGSGRIGMPEGEDLLFLP 70
Query: 246 QR 247
QR
Sbjct: 71 QR 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 28/157 (17%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETF 961
++L DVS +PG + L+G +GAGK+TL+ V+ G G I+ + +
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---------- 67
Query: 962 ARISGYCEQN---DIHSPNVTIYESLLYSAWLRLPKDMFVEEVM-ELVEMKALRNSLVGL 1017
RI GY Q D P L + +LRL E+++ L ++A L+
Sbjct: 68 -RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGTKKEDILPALKRVQA--GHLIDA 116
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 117 P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 41/169 (24%)
Query: 140 VRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPS 199
++ N+S + + + SL + + G + L D+S +
Sbjct: 4 IKVSNVSKK-------FRIYHEKSYSLK--KRLKGLAKGGRKVAEF-WALKDISFEIYKG 53
Query: 200 RMTLLLGPPGSGKTTLLQALSG--KSDK-SLRVSGRVTYCGHELTEFVPQRTCAYISQHD 256
++G G+GK+TLL+ ++G K ++V+G+V F
Sbjct: 54 ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGF------------- 100
Query: 257 LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
E+T RE + G LG L+R+E D + EI F
Sbjct: 101 --DPELTGRENIYLRGLILG----------LTRKEIDEKV---DEIIEF 134
|
Length = 249 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 66/263 (25%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR----VSGRVT 234
+PS+ + IL +S + P + L+G G GK+T++ L R SG +
Sbjct: 10 YPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL-------ERFYDPTSGEIL 61
Query: 235 YCGHELTEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRRE 291
G ++ + + +SQ + + T+ E + +
Sbjct: 62 LDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG-------------------- 100
Query: 292 KDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG--ISGGQ 349
KPD + +A + + D+ I+ L D +VG RG +SGGQ
Sbjct: 101 -----KPDATDEEVEEAAKKANI-----HDF---IMSLPDGYDTLVGE---RGSQLSGGQ 144
Query: 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQI----VRFMRQMVHITDVTMIISLLQP 405
K+R+ L+ K L +DE ++ LD+ + + R M+ I + +S ++
Sbjct: 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIV-IAHRLSTIRN 203
Query: 406 APETYDLFDDIILLSEGEIVYQG 428
A D I +L G++V QG
Sbjct: 204 A-------DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 54/271 (19%), Positives = 110/271 (40%), Gaps = 52/271 (19%)
Query: 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTE-----F 243
DVS + +T ++GP G GK+T+L++++ D S RV+G++ ++ +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 244 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
+R + Q M++ + V ++L ++R E D I ++
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDN---------VIAGYKLNGRVNRSEAD-EI-----VE 126
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
+ +K A+ D D + N M +SGGQ++R+ +
Sbjct: 127 SSLKRVAL-----------------WDEVKDRLKSNAME--LSGGQQQRLCIARTIAVKP 167
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+ + MDE ++ LD +T +I + ++ + ++ +Q A D G+
Sbjct: 168 EVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDY---TAFFYMGD 224
Query: 424 IVYQGPREYVLDFFESVGFRCPERKGAADFL 454
+V G + + F PE+K D++
Sbjct: 225 LVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 52/252 (20%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
L V+ ++ L+G G GK+TLL +SG + + SG V G ++TE P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 249 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKA 308
+ + L +TVRE + + +L +LS+ E+ A +
Sbjct: 58 VVFQNYSLLPW--LTVRENIALAVDR--------VLPDLSKSERRAIV------------ 95
Query: 309 TAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFM 368
+ + ++GL AD G +SGG K+RV L K L +
Sbjct: 96 ------------EEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 369 DEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG------ 422
DE LD+ T + + Q+ VT+++ + E L D +++L+ G
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLM-VTHDVDEALLLSDRVVMLTNGPAANIG 197
Query: 423 ---EIVYQGPRE 431
E+ + PR+
Sbjct: 198 QILEVPFPRPRD 209
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-04
Identities = 70/311 (22%), Positives = 124/311 (39%), Gaps = 60/311 (19%)
Query: 801 PFKETKSVMMEHNDGGKSKKQSNSHAQQ------NMRAADMSPPSTAPLFEGIDMAVMNT 854
P KS + ++GG K N + N R +S P+ P+++ + + +
Sbjct: 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRY--ISRPNV-PIYKDLTFSCDSK 1194
Query: 855 PDNSIIGATSTRKG--MVLPFQPLSLAFDHVNYFV-----DMPAEMKSQGIEENRLQL-- 905
+I+G T + K M L + L DH F DM E QG EE + +
Sbjct: 1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKN 1254
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK--QETFAR 963
+ + S G SG T + +G + + I Y K + F+
Sbjct: 1255 VNEFSLTKE--------GGSGEDSTVF------KNSGKILLDGVDICDYNLKDLRNLFSI 1300
Query: 964 ISGYCEQNDIHSP---NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
+S P N++IYE++ + +D E+V + A+ + LP
Sbjct: 1301 VS--------QEPMLFNMSIYENIKFGK-----EDATREDVKRACKFAAIDEFIESLPNK 1347
Query: 1021 ---------DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D
Sbjct: 1348 YDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407
Query: 1072 G-RTVVCTIHQ 1081
+T++ H+
Sbjct: 1408 ADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 29/194 (14%)
Query: 50 SGREEDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESI 109
+ + A ++ ++ K + E + + + S+
Sbjct: 58 DSELRKFQTREAAKVK--DAEAQLLKDPAEKKREERKA-----------AKKIERSTPSL 104
Query: 110 LKVVEEDNEKFLLRL--RERTDRVG----IEIPKIEVRFENLSIEGDAYVGTRALPTLLN 163
++ ++ + + R ++V EIP V I+ + LL
Sbjct: 105 IERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQSPTR--LNLINELLR 162
Query: 164 TSLNAIEG-----VLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQA 218
L LR F K RKL + + IV+ R+ L+GP G GKTT L
Sbjct: 163 AGLELEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAK 222
Query: 219 LSGKS---DKSLRV 229
L+ + K +V
Sbjct: 223 LAARYVMLKKKKKV 236
|
Length = 407 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 1013 SLVGLP------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1067 NTVDTGRTVVCTIH 1080
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGYIEGSISISGYPKKQETF 961
++++S RPG LVG SG+GK+T L+ ++ + G I G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 962 ARISGYCEQNDI--HSPNVTIYESL----LYSAWLRLPKDMFVEEVMELVEMKALRNSLV 1015
++ + + PN ++ L + LR+ + E + + V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEE--V 412
Query: 1016 GL--------PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
GL P S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 413 GLDPETRHRYPA--EFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 334 DIMVGNEMRRG--ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMV 391
D +VG RG +SGG+K+RV ++ L +DE ++ LD+ T +I +R +
Sbjct: 128 DTIVG---ERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 392 HITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLD 435
+I L T D II+L +G IV +G E +L
Sbjct: 185 KGRTTIVIAHRLS----TIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
L D+S VK LLGP G GKTTLL+ ++G ++ +G + G ++T PQ+
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQK 75
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 49/261 (18%)
Query: 175 FLRLFPSKKRKLEILHDVS-GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRV 233
F + P +KR L+ +S I + +T++ G G+GK+TLL A++G D SG++
Sbjct: 11 FFKGTPLEKR---ALNGLSLEIAEGDFVTVI-GSNGAGKSTLLNAIAG--DLKP-TSGQI 63
Query: 234 TYCGHELTEF-VPQR--TCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRFELLAELS 288
G ++T+ V +R A + Q L E+T+ E L LAE
Sbjct: 64 LIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENL--------------ALAE-- 107
Query: 289 RREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGG 348
R K G+ S L + + ++ L + + + + + +SGG
Sbjct: 108 SRGKKRGLS--------------SALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGG 152
Query: 349 QKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT--MIISLLQPA 406
Q++ ++ + P K L +DE + LD T ++ ++V +T M+ ++ A
Sbjct: 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA 212
Query: 407 PETYDLFDDIILLSEGEIVYQ 427
D + +I+L G+IV
Sbjct: 213 ---LDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
+LVG LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-04
Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 36/222 (16%)
Query: 906 LQDVSGAFRPG--VLT------------ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI 951
+ +VS A+R VL ALVG +G+GK+TL +L G EG I +
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRL 400
Query: 952 SGYPKKQETFA--RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKA 1009
G P + + R Q D P V + ++ L A + L +D+ E+V + +E
Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDISEEQVWQALETVQ 454
Query: 1010 LRNSLVGLP-------GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060
L LP G G LS Q++ L +A LV P I+ +DE T+ +D+
Sbjct: 455 LAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514
Query: 1061 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102
+ + + V T+V H+ S I EA D + ++ RG V
Sbjct: 515 IQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI---EGSISISGYPKKQET 960
L DV+ + G A++G +G+GK+TL+ L G + T G + E I+ KK +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
+ G Q P ++E + P + V E + K ++ L G+
Sbjct: 83 LRKKVGIVFQ----FPEHQLFEETVEKDICFGPMNFGVSEE----DAKQKAREMIELVGL 134
Query: 1021 D---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 1070
LS Q +R+ IA L P ++ +DEPT+GLD + +M + +
Sbjct: 135 PEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE 194
Query: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100
G T V H D D++ +M +G
Sbjct: 195 KGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR--ISGYCEQN 971
G A++G SGAGK+TL++++AG T GS++++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 972 DIHSPNVTIYE--SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029
++ ++T+ + L + L+L E++ + + + L LPG LS QR+
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQ-REKLHAIARQMGIEDLLARLPG--QLSGGQRQ 136
Query: 1030 RLTIAVELVANPSIIFMDEPTSGLD 1054
R+ +A LV I+ +DEP S LD
Sbjct: 137 RVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 25/167 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY----IEGSISISG---YPKKQ 958
L++++ +TA +G SG GK+TL+ R Y EG I + G KQ
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTF-NRMYELYPEQRAEGEILLDGENILTPKQ 87
Query: 959 ETF---ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV 1015
+ A++ G Q P ++IY+++ + +RL + + E+ E VE AL + +
Sbjct: 88 DIALLRAKV-GMVFQKPTPFP-MSIYDNIAFG--VRLFEKLSRAEMDERVE-WALTKAAL 142
Query: 1016 --------GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
G LS Q++RL IA + P ++ +DEP S LD
Sbjct: 143 WNEVKDKLHQSG-YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 34/171 (19%)
Query: 909 VSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI--EGSISISGYPKKQ------ 958
V+ R + +L+G +GAGKTT+ + L G + TGG I G I G P Q
Sbjct: 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ-HIEGLPGHQIARMGV 82
Query: 959 -ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD----MFVEEVMELVEMKALRNS 1013
TF + + E +T+ E+LL + +L + E +AL +
Sbjct: 83 VRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA 134
Query: 1014 LVGLPGVD----------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
L V L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 135 ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 22/159 (13%)
Query: 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFARISGY 967
G G + ++G +G GKTT + +LAG + G E + +S P+
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEED-LKVSYKPQYISP------- 412
Query: 968 CEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027
+ T+ + L + F E+++ + ++ L V D LS +
Sbjct: 413 -------DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPV-----DELSGGE 460
Query: 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
+R+ IA L + +DEP++ LD IV + +R
Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 32/216 (14%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEFV 244
+IL VS + S++T ++GP G GK+T L+ L+ ++ +RV GRV EF
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV--------EFF 72
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
Q I + ++ + + ++ L + ++ +A K G +P EID
Sbjct: 73 NQN----IYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVA---YGVKIVGWRPKLEIDD 125
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
++ S LK + D + + ++ +SGGQ++R+ L K
Sbjct: 126 IVE----SALKDADLWDEIKHKI-----------HKSALDLSGGQQQRLCIARALAVKPK 170
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII 400
L MDE GLD + ++ ++ + +++TM+I
Sbjct: 171 VLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206
|
Length = 261 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-04
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARI 964
+LQD+S + G L+G +G+GK+TL+ L + EG I I G T
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTL--- 1287
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFV----EEVMELVEMKALRNSLVGLPG- 1019
Q + V + ++S R D + EE+ ++ E L++ + P
Sbjct: 1288 -----QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDK 1342
Query: 1020 -----VDG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
VDG LS ++ + +A +++ I+ +DEP++ LD I+ +T++ +
Sbjct: 1343 LDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN 1402
Query: 1072 GRTVVC 1077
++
Sbjct: 1403 CTVILS 1408
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 62/228 (27%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEFVPQ 246
L ++ ++ +++T L+GP G GK+T L+ L+ +D S+++ G V G ++
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI------ 72
Query: 247 RTCAYISQHDLHHGE--------------MTVRETLDFSGRCLGVGTRFELLAELSRREK 292
Y S D++ M++ + + + R G+ + +L + + K
Sbjct: 73 ----YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLK 128
Query: 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKR 352
A + E+ +K +A+ G+SGGQ++R
Sbjct: 129 GAALW--DEVKDRLKKSAL--------------------------------GLSGGQQQR 154
Query: 353 VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII 400
+ L + L MDE ++ LD +T +I ++++ D T++I
Sbjct: 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVI 200
|
Length = 250 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 8e-04
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 39/206 (18%)
Query: 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG---YPKKQETFARISGYCEQND 972
G L A+VG G GK++L+ L +EG + + G Y +Q A I QND
Sbjct: 664 GALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQ---AWI-----QND 713
Query: 973 IHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVD---------GL 1023
++ E++L+ L + ++V+E AL L LP D L
Sbjct: 714 ------SLRENILFGKALNEK---YYQQVLEAC---ALLPDLEILPSGDRTEIGEKGVNL 761
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDTGRTVVCTIHQ 1081
S Q++R+++A + +N I D+P S +DA + V V +T + H
Sbjct: 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH- 820
Query: 1082 PSIDIFEAFDELFLMKRGGHVIYAGP 1107
I D + +M GG + G
Sbjct: 821 -GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 9e-04
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKS 226
P + L++GPPGSGKTTL +AL+ +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 63/264 (23%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT 241
K R+ ++ DVS V + LLGP G+GKTT + G R +G + +++
Sbjct: 14 KGRR--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDIS 68
Query: 242 EFVP-----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI 296
+P +R Y+ Q E ++ L + V ++ +LS +++
Sbjct: 69 -LLPLHARARRGIGYLPQ------EASIFRRLSVYDNLMAV---LQIRDDLSAEQRED-- 116
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
+ M+ + L+ S+G + +SGG+++RV
Sbjct: 117 ----RANELMEEFHIEHLRDSMG-----------------------QSLSGGERRRVEIA 149
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQM------VHITDVTMIISLLQPAPETY 410
L K + +DE G+D + I R + + V ITD ET
Sbjct: 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITD--------HNVRETL 201
Query: 411 DLFDDIILLSEGEIVYQGPREYVL 434
+ + ++S+G ++ G +L
Sbjct: 202 AVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221
E+L +S V+ + +++GP GSGK+TLL+ L+G
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50
|
Length = 240 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 59/259 (22%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV----SGRVTYCGHELTE 242
IL+ +S + + ++G G+GK+T+L+ L R SG +T G ++ +
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLL-------FRFYDVNSGSITIDGQDIRD 329
Query: 243 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
Q I + ++T+ F+ T + DA E+
Sbjct: 330 VTQQSLRRAIG--------IVPQDTVLFND------TIAYNIK---YGRPDAT---AEEV 369
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG--ISGGQKKRVTTGEMLV 360
A +A + SL Y D VG RG +SGG+K+RV ++
Sbjct: 370 GAAAEAAQIHDFIQSLPEGY-----------DTGVG---ERGLKLSGGEKQRVAIARTIL 415
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII----SLLQPAPETYDLFDDI 416
L +DE ++ LD+ T I +R+ V T++I S + A D+I
Sbjct: 416 KNPPILILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAHRLSTIIDA-------DEI 467
Query: 417 ILLSEGEIVYQGPREYVLD 435
I+L G IV +G E +L
Sbjct: 468 IVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 51/261 (19%), Positives = 90/261 (34%), Gaps = 75/261 (28%)
Query: 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL-RVSGRVTYCGHELTEFVPQRT 248
D++ +K + L+G GSGK+ A+ G L + SG + G L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL-------- 54
Query: 249 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG-IKPDPEIDAF-- 305
LS R + I +P AF
Sbjct: 55 ------------------------------------LPLSIRGRHIATIMQNP-RTAFNP 77
Query: 306 -------MKATAMSGLKTS-LGTDYVLKIL---GLDICADIMVGNEMRRGISGGQKKRVT 354
T S K S +L+ L GL +++ + +SGG +RV
Sbjct: 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQ--LSGGMLQRVM 135
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-- 412
L+ L DE +T LD ++++ +R++ + +++ T+DL
Sbjct: 136 IALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI-------THDLGV 188
Query: 413 ----FDDIILLSEGEIVYQGP 429
D++ ++ +G IV +G
Sbjct: 189 VARIADEVAVMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGGQK+RV ++ K L +DE + GLD +I+ ++++ H + M I L+
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL-H-KEYNMTIILVS 202
Query: 405 PAPE-TYDLFDDIILLSEGEIVYQG-PREYV--LDFFESVGFRCPE 446
+ E L D II++++G+ QG PRE ++ ES+G P+
Sbjct: 203 HSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQH 255
+ + + GP G+GKT+LL+ L+G + +G V + G + QR Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRR---QRD-EY--HQ 74
Query: 256 DL----HH----GEMTVRETLDFSGRCLGVGTRFELLAELSR 289
DL H E+T E L F R G G L L++
Sbjct: 75 DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 13/68 (19%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
+L DVS V ++T++LG GSGK+TLLQ+L + + S GRV +
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRV----------WAE 720
Query: 247 RTCAYISQ 254
R+ AY+ Q
Sbjct: 721 RSIAYVPQ 728
|
Length = 1560 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 61/263 (23%), Positives = 100/263 (38%), Gaps = 55/263 (20%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-- 245
+ DV+ ++ +L+GP GSGKTT L+ ++ + + SG + G ++++ P
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVE 72
Query: 246 -QRTCAY-ISQHDL--HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPE 301
+R Y I Q L H +TV E + + LG +
Sbjct: 73 LRRKIGYVIQQIGLFPH---LTVAENIATVPKLLGW----------DKERIKKRA----- 114
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG 361
D +L ++GLD + +SGGQ++RV L
Sbjct: 115 -------------------DELLDLVGLD---PSEYADRYPHELSGGQQQRVGVARALAA 152
Query: 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421
L MDE LD T Q+ ++++ T I+ + E L D I ++
Sbjct: 153 DPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDA 211
Query: 422 GEIVYQGPREYVL-----DFFES 439
GEIV + +L DF E
Sbjct: 212 GEIVQYDTPDEILANPANDFVED 234
|
Length = 309 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 44/246 (17%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ- 246
+LH +S ++T L+G GSGK+TLL+ L S G + L + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKA 82
Query: 247 --RTCAYISQHDLHHGE-MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
R AY+ Q L E MTVRE + +G R+ L R G +++
Sbjct: 83 FARKVAYLPQQ-LPAAEGMTVREL-------VAIG-RYPWHGALGR----FGAADREKVE 129
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
+A ++ GLK + + + +SGG+++R ++ +
Sbjct: 130 ---EAISLVGLKP--------------------LAHRLVDSLSGGERQRAWIAMLVAQDS 166
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+ L +DE ++ LD + ++ + ++ +T +I++L D ++ L GE
Sbjct: 167 RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLT-VIAVLHDINMAARYCDYLVALRGGE 225
Query: 424 IVYQGP 429
++ QG
Sbjct: 226 MIAQGT 231
|
Length = 265 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL 402
R SGG ++R+ LV + +FMDE + GLD S +++ +R +V + ++I
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV- 208
Query: 403 LQPAPETYDLF------DDIILLSEGEIVYQGPREYVLD 435
T+DL D ++++ +G++V G + VLD
Sbjct: 209 ------THDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 58/256 (22%), Positives = 101/256 (39%), Gaps = 55/256 (21%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYCGHELTEFV 244
+L V V+ + L+GP G+GKTTLL+A++G + ++ V+G L+
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV---EALSARA 74
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
R A + Q E VR+ ++ GR RF+ E R + ++ +
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEM-GRTPHRS-RFDTWTETDRAAVERAME-RTGVAQ 131
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
F TSL SGG+++RV L
Sbjct: 132 FADRPV-----TSL---------------------------SGGERQRVLLARALAQATP 159
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL------FDDIIL 418
L +DE + LD + + + +R++V T + ++ +DL D+++L
Sbjct: 160 VLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAI-------HDLDLAARYCDELVL 211
Query: 419 LSEGEIVYQGPREYVL 434
L++G + GP VL
Sbjct: 212 LADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 54/192 (28%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+L D+S + ++GP G+GK+TLL+ L+G+ +SG V G +
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVK-VGETV---- 385
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
Y Q H E+ +T +L ELS D + E+ A
Sbjct: 386 ---KIGYFDQ---HRDELDPDKT---------------VLEELSEGFPDGDEQ---EVRA 421
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
++ G G D + +SGG+K R+ ++L+ P
Sbjct: 422 YLG---------RFGFT------GEDQEKPV-------GVLSGGEKARLLLAKLLLQPPN 459
Query: 365 ALFMDEISTGLD 376
L +DE + LD
Sbjct: 460 LLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDV 396
+ N + R SGG+++R+ +L+ A + +DE + GLD T Q++ + +++ +
Sbjct: 91 LRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTL 150
Query: 397 TMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428
I L + D I+ L G+I+ QG
Sbjct: 151 IWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242
+L ++S +K LLG GSGK+TLLQ L+G G +T G +++
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSD 68
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 47/176 (26%)
Query: 204 LLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEM 262
LLGP G GKTT+L+ ++G SGR+ G ++T R + Q M
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHM 101
Query: 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDY 322
TV E + F R AE++ R +A
Sbjct: 102 TVFENVAFGLRMQKTPA-----AEITPRVMEA---------------------------- 128
Query: 323 VLKILGLDICADIMVGNEMRR--GISGGQKKRVTTGEMLVGPAKALFMDEISTGLD 376
L+++ L+ A R+ +SGGQ++RV +V K L +DE + LD
Sbjct: 129 -LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 51/256 (19%), Positives = 103/256 (40%), Gaps = 46/256 (17%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTE-- 242
+ L +VS + + +T L+GP G GK+T ++ L+ +D K+ R+ G+V+ G ++ E
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85
Query: 243 --FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
V R + + M++ + + + R G + +L + + A +
Sbjct: 86 VDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKK-DLDGVVENALRSAALWD-- 142
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
E +K+ A+S +SGGQ++R+ L
Sbjct: 143 ETSDRLKSPALS--------------------------------LSGGQQQRLCIARTLA 170
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD-----LFDD 415
K + DE ++ LD +T +I + + + ++ +Q A D L +
Sbjct: 171 VKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGE 230
Query: 416 IILLSEGEIVYQGPRE 431
+I + ++ PRE
Sbjct: 231 LIEFGQTRQIFHNPRE 246
|
Length = 258 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 38/262 (14%)
Query: 170 EGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKS 226
E V RL+ K IL D++ + + + ++GP GSGK+TLL+ L+ D
Sbjct: 8 EDVFNISRLYLYINDK-AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSK 66
Query: 227 LRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAE 286
++V G+V Y G ++ + + +R+ + + +
Sbjct: 67 IKVDGKVLYFGKDIFQI----------------DAIKLRKEVGMVFQQPNPFPHLSIYDN 110
Query: 287 LSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346
++ K GIK EI ++ K L + ++ N +S
Sbjct: 111 IAYPLKSHGIKEKREIKKIVEECLR---KVGLWKEVYDRL------------NSPASQLS 155
Query: 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406
GGQ++R+T L K L MDE ++ +D + I + + ++ + ++ ++I P
Sbjct: 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQ 213
Query: 407 PETYDLFDDIILLSEGEIVYQG 428
+ + D + L GE+V G
Sbjct: 214 -QVARVADYVAFLYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+D+S G ++G +GAGK+TL+ ++AG + T G + ++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 964 ISGYCEQNDIHSPNVTIYESL-LYSAWLRLPK---DMFVEEVMELVEMKALRNSLVGLPG 1019
++ E P +T E++ L L L + D V+E++E E+ + P
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID----QP- 144
Query: 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
V S+ RL +V P I+ +DE + DA + + V+ +T+V
Sbjct: 145 VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVS 204
Query: 1080 HQPSIDIFEAFDELFLMKRGGHVIYAG 1106
H I + D ++ G + G
Sbjct: 205 HDLGA-IKQYCDRAIWLEH-GQIRMEG 229
|
Length = 249 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARI 964
+L+ ++ G +VG +GAGK++L L + EG I I G A+I
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSL--TLGLFRINESAEGEIIIDGL-----NIAKI 1353
Query: 965 SGYCEQNDIHSPNVTIY--ESLLYSAWLRLPKDMFV----EEVMELVEMKALRNSLVGLP 1018
+D+ +TI + +L+S LR+ D F EEV +E+ L+ + LP
Sbjct: 1354 G----LHDLRF-KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALP 1408
Query: 1019 ---------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
G + LS QR+ + +A L+ I+ +DE T+ +D ++ T+R
Sbjct: 1409 DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF 1468
Query: 1070 DTGRTVVCTI 1079
+ CT+
Sbjct: 1469 ED-----CTV 1473
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 44/223 (19%)
Query: 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHEL-----TEFVPQRT 248
++ + +T +GP G GK+T+L++L+ +D K R G V + G ++ V +R
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 249 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKA 308
+ Q + M++ + + F R L+R + D G + A A
Sbjct: 91 IGMVFQQP-NPFSMSIFDNVAFGLR-------------LNRYKGDLGDRVK---HALQGA 133
Query: 309 TAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFM 368
+K LK+ GL +SGGQ++R+ + + L +
Sbjct: 134 ALWDEVKDK------LKVSGLS--------------LSGGQQQRLCIARAIATEPEVLLL 173
Query: 369 DEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411
DE + LD T ++ M ++ + ++ +Q A D
Sbjct: 174 DEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVAD 216
|
Length = 261 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARI 964
+L+++S + PG L+G +G+GK+TL+ EG I I G
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSVPL--- 72
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFV----EEVMELVEMKALRNSLVGLPG- 1019
Q + V + ++S R D + EE+ ++ E L++ + PG
Sbjct: 73 -----QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQ 127
Query: 1020 -----VDG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
VDG LS ++ + +A +++ I+ +DEP++ LD ++ +T++
Sbjct: 128 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFAD 187
Query: 1072 GRTVVC 1077
++
Sbjct: 188 CTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 22/159 (13%)
Query: 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGYIEGSISISGYPKKQETFARISGYC 968
G+ + ++G +G GKTT + +LAG G IE + Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 969 EQNDIHSPNVTIYESLLYSAWLRLPKD-MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027
T+ + LL S F E+ + ++++ + + V LS +
Sbjct: 77 ----------TVRD-LLSSITKDFYTHPYFKTEIAKPLQIEQILDRE-----VPELSGGE 120
Query: 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
+R+ IA L + I +DEP++ LD + + +R
Sbjct: 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221
+L+DVS ++ + LLGP GSGK+TLL+ ++G
Sbjct: 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 57/258 (22%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240
S+ RK + D+S V + G GSG+T L+ L G DK R G +
Sbjct: 273 SRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFG-VDK--RAGGEIR------ 321
Query: 241 TEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREK----DAGI 296
L+ +++ R LD + + T SRR+ + I
Sbjct: 322 ----------------LNGKDISPRSPLDAVKKGMAYITE-------SRRDNGFFPNFSI 358
Query: 297 KPDPEIDAFMKATAMSGLKTSLG----------TDYVLKILGLDICADIMVGNEMRRGIS 346
+ I +K G K ++G + ++L L C + N+ +S
Sbjct: 359 AQNMAISRSLK---DGGYKGAMGLFHEVDEQRTAENQRELLALK-CHSV---NQNITELS 411
Query: 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406
GG +++V + L + + DE + G+D +I + MRQ+ V +++S
Sbjct: 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS--SEL 469
Query: 407 PETYDLFDDIILLSEGEI 424
PE + D I + EG +
Sbjct: 470 PEIITVCDRIAVFCEGRL 487
|
Length = 510 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 55/248 (22%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-- 246
L ++ V+P L+GP G+GK+TL Q L D SGR+ G +L + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
R + D +V E + + GR DA D E++A
Sbjct: 413 RARMALVPQDPVLFAASVMENIRY-GR------------------PDAT---DEEVEAAA 450
Query: 307 KATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKAL 366
+A I L D +G E +SGGQ++R+ ++ A L
Sbjct: 451 RAAHAHEF-----------ISALPEGYDTYLG-ERGVTLSGGQRQRIAIARAILKDAPIL 498
Query: 367 FMDEISTGLDSSTTFQIVR--FMRQMVHITDVTMII----SLLQPAPETYDLFDDIILLS 420
+DE ++ LD+ + Q+V+ M T T+II + + A D I+++
Sbjct: 499 LLDEATSALDAESE-QLVQQALETLMKGRT--TLIIAHRLATVLKA-------DRIVVMD 548
Query: 421 EGEIVYQG 428
+G IV QG
Sbjct: 549 QGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 50/240 (20%), Positives = 96/240 (40%), Gaps = 45/240 (18%)
Query: 204 LLGPPGSGKTTLLQAL--------SGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQH 255
L+GP G GK+TLL+ + + +R+ GR Y ++ +R + Q+
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY-SPDVDPIEVRREVGMVFQY 93
Query: 256 DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLK 315
+T+ + + +G + L + S++E D ++ A KA +K
Sbjct: 94 PNPFPHLTIYDNV-------AIGVKLNGLVK-SKKELDERVEW-----ALKKAALWDEVK 140
Query: 316 TSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGL 375
L N+ +SGGQ++R+ L K L MDE + +
Sbjct: 141 DRL--------------------NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 376 DSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLD 435
D T +I + ++ + T+++ PA + + D + L G+++ GP V +
Sbjct: 181 DPVGTAKIEELLFELK--KEYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 53/255 (20%), Positives = 97/255 (38%), Gaps = 69/255 (27%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRT 248
+ DVS K + ++GP G+GKTTL+ L QR
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--------------------------QRV 384
Query: 249 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI------------ 296
+D G++ + G + TR L ++ +DAG+
Sbjct: 385 ------YDPTVGQILI------DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLG 432
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356
+ + +A K + D++LK D +VG R +SGG+++R+
Sbjct: 433 REGATDEEVYEAA-----KAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIA 483
Query: 357 EMLVGPAKALFMDEISTGLDSSTTFQI---VRFMRQMVHITDVTMIISLLQPAPETYDLF 413
++ A L +DE ++ LD T ++ + +R+ T II+ DL
Sbjct: 484 RAILKNAPILVLDEATSALDVETEARVKNAIDALRK----NRTTFIIAHRLSTVRNADL- 538
Query: 414 DDIILLSEGEIVYQG 428
++ L +G ++ +G
Sbjct: 539 --VLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 64/276 (23%)
Query: 174 GFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRV 233
GFLR L + +S ++ + L+G GSGK+TL AL + + G +
Sbjct: 291 GFLR---RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL----RLIPSQGEI 343
Query: 234 TYCGHELTEFVPQRTCAYISQHDL----HHGEMTVRETLDFSGRCLGVGTRFELLAELSR 289
+ G ++ + + + +G ++ R T+ G+ + G R LS
Sbjct: 344 RFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTV---GQIIEEGLRVHEPK-LSA 399
Query: 290 REKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR---GIS 346
E+D + I+A L+ +GLD R S
Sbjct: 400 AERDQRV-----IEA-------------------LEEVGLD-------PATRNRYPHEFS 428
Query: 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMI-ISLLQP 405
GGQ++R+ L+ + + +DE ++ LD S Q++ +R + ++ + IS
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS---- 484
Query: 406 APETYDL------FDDIILLSEGEIVYQGPREYVLD 435
+DL +I++ +G+IV QGP E V
Sbjct: 485 ----HDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 28/119 (23%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+ + L DVS V L+G G+GK+TLL+ L+G SG VT G
Sbjct: 28 RKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG- 83
Query: 239 ELTEFVPQRTCAYISQHDLHHG---EMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294
R + + L G E+T RE + +GR LG LSR+E D
Sbjct: 84 --------RVSSLL---GLGGGFNPELTGRENIYLNGRLLG----------LSRKEIDE 121
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 47/186 (25%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGYPKKQ 958
+ + Q+++ + G LVG SG GK+TL+ ++AG + I G I I G
Sbjct: 14 DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG----- 65
Query: 959 ETFARISGYCE----------QNDIHSPNVTIYESLLYSAWLR-LPKDMF---VEEVMEL 1004
R+ E QN P++++ E++ Y +R +PK V E +
Sbjct: 66 ----RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARI 121
Query: 1005 VEMKAL-----RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RA 1057
+E++ L R LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 122 LELEPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRV 171
Query: 1058 AAIVMR 1063
MR
Sbjct: 172 Q---MR 174
|
Length = 356 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 17/192 (8%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI-----EGSISISGY 954
RL +L++VS + G L G SG+GK+TL+ L G I + +
Sbjct: 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82
Query: 955 PKKQ--ETFARISGYCEQNDIHSPNVT----IYESLLYSAWLRLPKDMFVEEVMELVEMK 1008
++ E GY Q P V+ + E LL P+++ + +L+
Sbjct: 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV---PREVARAKAADLLTRL 139
Query: 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
L L L EQ +R+ IA + + I+ +DEPT+ LDA A+V+ +R
Sbjct: 140 NLPERLWSLAPATFSGGEQ-QRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198
Query: 1069 VDTGRTVVCTIH 1080
G +V H
Sbjct: 199 KARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 38/193 (19%)
Query: 889 MPAEMKSQGIE-ENRLQLLQDVSGAFRPGVLTALVGVSGAGKT----TLMDVL-AG-RKT 941
MP +++ + I + L+ VS + G + ALVG SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 942 GGYI--EGSISISGYPKKQETFARI-----SGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994
G + +G ++ + A I S + N +H+ + E+ L +
Sbjct: 61 AGRVLLDG-KPVAPCALRGRKIATIMQNPRSAF---NPLHTMHTHARETCLALG--KPAD 114
Query: 995 DMFVEEVMELVEMKALRNSLVGLPGVDG--------LSTEQRKRLTIAVELVANPSIIFM 1046
D + +E VGL +S +R+ IA+ L+ I
Sbjct: 115 DATLTAALE----------AVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164
Query: 1047 DEPTSGLDARAAA 1059
DEPT+ LD A A
Sbjct: 165 DEPTTDLDVVAQA 177
|
Length = 254 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 49/217 (22%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT 241
K IL D++ ++ +M ++G GSGK+TLL + SG+V G E
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGQETP 63
Query: 242 EFVPQR-------TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294
++ Y+ Q+ TV E LD LG+ +LS++EK
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLD-----LGL-----KYKKLSKKEKRE 113
Query: 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
K L+ +GL++ + +SGG+++RV
Sbjct: 114 KKK------------------------EALEKVGLNLKLKQKIYE-----LSGGEQQRVA 144
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMV 391
++ P + DE + LD +++ + ++
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVS-GRVTYCGHELT 241
E L DVS + L GP G+GK+TLL+ + G R + G++ GH+L+
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG----EERPTRGKILVNGHDLS 67
|
Length = 223 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 66/279 (23%), Positives = 101/279 (36%), Gaps = 78/279 (27%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
+ L +S + T LLGP G+GK+TLL L+G L GRV G E+
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG---IYLPQRGRVKVMGREVN----A 71
Query: 247 RTCAYISQH--------DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
++ D TV + + F +G+ E+ RR ++A
Sbjct: 72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-----DEVERRVEEA---- 122
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM 358
+KA M + Y L S GQKKRV +
Sbjct: 123 -------LKAVRMWDFRDK--PPYHL---------------------SYGQKKRVAIAGV 152
Query: 359 LVGPAKALFMDEISTGLDSS---TTFQIV-RFMRQMVHITDVTMIISLLQPAPETYDL-- 412
L + +DE LD T +I+ R Q T+I++ T+D+
Sbjct: 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIVA-------THDVDL 200
Query: 413 ----FDDIILLSEGEIVYQGPREYVLD--FFESVGFRCP 445
D +I+L EG ++ +G + + D E G R P
Sbjct: 201 AAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP 239
|
Length = 274 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELT 241
+ E L +++ + +++T L+GP G GK+TLL++L+ +D +R+ G+V + G ++
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 57/261 (21%), Positives = 100/261 (38%), Gaps = 51/261 (19%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTE 242
K ++L +++ ++T ++GP G GK+TLL+AL+ +D R+ G V
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV--------- 66
Query: 243 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
L E LD VG F+ +P+P
Sbjct: 67 --------------LLDNENIYSPNLDVVNLRKRVGMVFQ--------------QPNPFP 98
Query: 303 DAFMKATA----MSGLKTSLGTDYVL-KILGLDICADIMVGNEMRRG--ISGGQKKRVTT 355
+ A M G D V+ K L D + N + G +SGGQ++R+
Sbjct: 99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD---- 411
+L + + MDE + LD +T +I M+++ + ++ +Q A D
Sbjct: 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGF 218
Query: 412 -LFDDIILLSEGEIVYQGPRE 431
L D++ ++ PR+
Sbjct: 219 LLTGDLVEYGRTGEIFSRPRD 239
|
Length = 251 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.004
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 916 GVLTALVGVSGAGKTTLMDVLAGRK---TGGYIEGSISISG---YPKKQETFA--RISGY 967
+T +G SG GK+T++ L G EG + G Y K + R G
Sbjct: 34 NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM 93
Query: 968 CEQNDIHSPN---VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLS 1024
Q PN ++I++++ + L K + V ++ AL + + V GLS
Sbjct: 94 VFQQ----PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLS 149
Query: 1025 TE--QRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057
Q++RL IA + P ++ +DEP S LD A
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184
|
Length = 261 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS 952
LL+D+S PG LVG +GAGK+TL+ ++AG EG ++
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 909 VSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFARISG 966
VS R G A++G +G+GK+TL +LAG T G I I+ +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----EILINDHPLHFGDYSFRSK 87
Query: 967 -----YCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGL-PG- 1019
+ + N +P + I + LRL D+ E+ + + + LR +VGL P
Sbjct: 88 RIRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQI-FETLR--MVGLLPDH 142
Query: 1020 ----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1084
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1472 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-257 Score=2380.27 Aligned_cols=1341 Identities=53% Similarity=0.910 Sum_probs=1251.6
Q ss_pred ccchhhhhHHHHhhCCChhhhhhhhhccccccCCccccccccCCCCchhhHHHHHHHHhhhhhcHHHHHHHHHHHHhhcC
Q 045902 53 EEDEEELKWAAIERLPTYDRVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDRVG 132 (1472)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (1472)
+||||+|||||+|||||++| +++.+. .++ ++|+.++++++++.+.++..+..++|+|+++.++++|++++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~-~~~-----~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSI-FES-----EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhh-ccC-----cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 46999999999999999999 655532 112 58999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEeeeEEEEEEecCCCcCCChhHhHHHHHHhhhhhcccccCCcccceeeeceeeEEeCCeEEEEEcCCCCcH
Q 045902 133 IEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGK 212 (1472)
Q Consensus 133 ~~~p~~~v~f~~L~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGK 212 (1472)
++|.++++++++.+++++..+ ||++|...+.++.+++..+.. ++.+..||+|+||.++||||++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 899999999999999998866 999999999999887666543 5566789999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHH
Q 045902 213 TTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREK 292 (1472)
Q Consensus 213 STLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 292 (1472)
||||++|+|.++......|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ +.+|+++
T Consensus 155 ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~ 231 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREK 231 (1391)
T ss_pred HHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHH
Confidence 9999999999998777789999999999999999999999999999999999999999999999998876 5556655
Q ss_pred hcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCC
Q 045902 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIS 372 (1472)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEpt 372 (1472)
+. ..+|++++++||++|+||+|||+++||+||||||||+||++++++++++||||+|
T Consensus 232 ~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 232 LA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 32 1579999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChHH
Q 045902 373 TGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAAD 452 (1472)
Q Consensus 373 sgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~ad 452 (1472)
+|||++|+.+++++||+++|..+.|++++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhcCCCCCCCCCCCCCCcCcccccHHHHHHHHHHH
Q 045902 453 FLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAR 532 (1472)
Q Consensus 453 fl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 532 (1472)
|++++++++++.++|..+..|+.+.+++||.+.|++++.++++..+++.++++++.++.++..++|.+++|+|+++|+.|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhc
Q 045902 533 EWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRD 612 (1472)
Q Consensus 533 ~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~ 612 (1472)
+|++++||.+++++++++.+++|+++|++|+++++ ++..++..+.|++||++++.+|++++|+.+++.++|||+|||+
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999985 5566788899999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 045902 613 FLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLG 692 (1472)
Q Consensus 613 ~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~ 692 (1472)
..|||+||+++|.+++++|.+++++++|.+|+||++|+.+++++||++++++|+++++++++||+++++++++.+|+++|
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCCCCCCCCCCCcc-----------cCCcchHHHH
Q 045902 693 TFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFL-----------VDEPTVGKAL 761 (1472)
Q Consensus 693 ~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~~~~~~~~~~~~-----------~~~~~~G~~~ 761 (1472)
++.++++.+++||+||..+||+||+|++|+||++|+++++++|||++++|+|.+.++.. ....+.|..+
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDY 686 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999997322110 1346789999
Q ss_pred HhhcCCc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCcccccChhhhhhhcccCCC
Q 045902 762 LKARGMY-----TEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMS 836 (1472)
Q Consensus 762 L~~~~~~-----~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1472)
++.+++. ...+|+|+++|+++||.++|++++++++.|+++..+.++.+..++.+.+...... +..
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~----------~~~ 756 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSA----------GSS 756 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhc----------ccc
Confidence 9999887 7888999999999999999999999999999999988887766554433211100 000
Q ss_pred CCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCC
Q 045902 837 PPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPG 916 (1472)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G 916 (1472)
.. .+.. . ...+...++++.|+++..++++|+.|.+++|.+++..| +++++|+|||+.++||
T Consensus 757 ~~--------~~~~------~--~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG 817 (1391)
T KOG0065|consen 757 SE--------IEKL------D--DSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPG 817 (1391)
T ss_pred cc--------cccc------c--cccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCC
Confidence 00 0000 0 01111355778899999999999999999998887776 6789999999999999
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch-
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD- 995 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~- 995 (1472)
.+|||||+||||||||||+|+||++.|.++|+|.+||+|++++.++|++|||+|+|.|.+.+||+|.|.|+|+||+|++
T Consensus 818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v 897 (1391)
T KOG0065|consen 818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 (1391)
T ss_pred ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ------HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC-CCccccCCCCCCCHHHHHHHHHHHHHH
Q 045902 996 ------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNT 1068 (1472)
Q Consensus 996 ------~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p-~il~LDEPTsgLD~~~~~~i~~~l~~l 1068 (1472)
+++|+|++.|||.+++|.++|.|| +|||.+|||||+||+||++|| .||||||||||||++++..|++.+|++
T Consensus 898 ~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkl 976 (1391)
T KOG0065|consen 898 SDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL 976 (1391)
T ss_pred CHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHH
Confidence 679999999999999999999999 999999999999999999999 889999999999999999999999999
Q ss_pred hhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCCCCCCCCCCCcceEEEecchhhhh
Q 045902 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVET 1148 (1472)
Q Consensus 1069 ~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~ 1148 (1472)
+++|+|||||+||||.++++.||++++|++||+++|+||+|++++++++||++++|+++ ++..||||||||+++.+.+.
T Consensus 977 a~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~-~~~~NPA~~mLevi~~~~~~ 1055 (1391)
T KOG0065|consen 977 ADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKC-ISDENPAEWMLEVIGAGAEA 1055 (1391)
T ss_pred HhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccC-CCCCChHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999988864 44459999999999998888
Q ss_pred hhchhHHHHHhhcHHHHHHHHHHHhhcCCCCC-CCCCcccccccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHH
Q 045902 1149 QLNVDFAAIYADSDLYRRNQQLIKELSSPAPG-SKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIG 1227 (1472)
Q Consensus 1149 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~ 1227 (1472)
+.+.||+++|++|++++++++++++++.++++ ..+..++++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.|
T Consensus 1056 ~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~g 1135 (1391)
T KOG0065|consen 1056 SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAG 1135 (1391)
T ss_pred ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988 78888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhHhHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 045902 1228 ALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVS 1307 (1472)
Q Consensus 1228 l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~l~e~P~~~ 1307 (1472)
|++|++||+.|+ ++||++|.+|++|+++++.+.+++..++|.+..||.++|||+++|||||.||++||+++|+||.+
T Consensus 1136 l~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l 1212 (1391)
T KOG0065|consen 1136 LFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNL 1212 (1391)
T ss_pred HhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHH
Confidence 999999999995 78999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccc
Q 045902 1308 IQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPI 1387 (1472)
Q Consensus 1308 ~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~ 1387 (1472)
+++++|++|+|+|+||++++.+|+||+++++++.+|++++|||+++++||.++|+++++++++++++||||++|++.||.
T Consensus 1213 ~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~ 1292 (1391)
T KOG0065|consen 1213 LQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK 1292 (1391)
T ss_pred HHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhCHHHHHHHHHHHHhhCCccceeeccC------CCcccHHHHHHhhcC----CccCchhHHHHHHHHHHHHHH
Q 045902 1388 WWRWYYWASPVAWTIYGLVTSQIGDKVSEVEVAG------ESGITVKEYLYKHYG----YDYDFLGAVAAAHIGFVVLFF 1457 (1472)
Q Consensus 1388 ~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~g----~~~~~~~~~~~il~~~~~~f~ 1457 (1472)
||+||||+||++|.++|++..++||.+..|...+ +.++||++|++++|| |.+|.......+..+|.+++.
T Consensus 1293 fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~ 1372 (1391)
T KOG0065|consen 1293 FWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADA 1372 (1391)
T ss_pred eeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHH
Confidence 9999999999999999999999999987763322 356899999999999 999999998889999999999
Q ss_pred HHHHHHHHhccccCC
Q 045902 1458 FVFVYGIKFLNFQRR 1472 (1472)
Q Consensus 1458 ~~~~~~~~~~~~~~r 1472 (1472)
+++.+++|+.|||||
T Consensus 1373 ~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1373 FLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-239 Score=2381.50 Aligned_cols=1412 Identities=62% Similarity=1.072 Sum_probs=1261.6
Q ss_pred ccchhhhhHHHHhhCCChhhhhhhhhcccc-ccCCcc---ccccccCCCCchhhHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 045902 53 EEDEEELKWAAIERLPTYDRVRKTMLKHVL-ENGRIG---YEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERT 128 (1472)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (1472)
|||||+|+|||+||||||+|+|++++.+.. ++|... .+++|+.+|+.++++.++++++++.++|++++++++++|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 120 (1470)
T PLN03140 41 DEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRI 120 (1470)
T ss_pred cCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhh
Confidence 789999999999999999999999996421 111111 1359999999999999999999999999999999999999
Q ss_pred hhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHhHHHHHHhhhhhcccccCCcccceeeeceeeEEeCCeEEEEEcCC
Q 045902 129 DRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPP 208 (1472)
Q Consensus 129 ~~~~~~~p~~~v~f~~L~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilGp~ 208 (1472)
|++|+++|++||+|+||+|++++.++++.+||++|.+.+.++.+.+.++...+++.+++||+|+||.++|||+++|+|||
T Consensus 121 ~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpn 200 (1470)
T PLN03140 121 DRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPP 200 (1470)
T ss_pred ccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCC
Confidence 99999999999999999999999999999999999999998887655444334556788999999999999999999999
Q ss_pred CCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhh
Q 045902 209 GSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELS 288 (1472)
Q Consensus 209 GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~ 288 (1472)
|||||||||+|+|+++++.+++|+|+|||+++++..+++.++||+|+|.|++++||+|||.|+++|++.+.++++..+.+
T Consensus 201 GSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~ 280 (1470)
T PLN03140 201 SSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELA 280 (1470)
T ss_pred CCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcC
Confidence 99999999999999988777899999999999887777889999999999999999999999999988776666656667
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEE
Q 045902 289 RREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFM 368 (1472)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illL 368 (1472)
+++++.++.|+++++.++++...+|.+.+..++++++.+||++|+||.||+++.++|||||||||+||++|+++|+++||
T Consensus 281 ~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlll 360 (1470)
T PLN03140 281 RREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFM 360 (1470)
T ss_pred HHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEE
Confidence 77887788888889999999988888888888999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCC
Q 045902 369 DEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERK 448 (1472)
Q Consensus 369 DEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~ 448 (1472)
||||+|||+.++.++++.|+++++..++|+|+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||+++
T Consensus 361 DEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~ 440 (1470)
T PLN03140 361 DEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERK 440 (1470)
T ss_pred eCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhcCCCCCCCCCCCCCCcCcccccHHHHHHH
Q 045902 449 GAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKT 528 (1472)
Q Consensus 449 ~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 528 (1472)
|+|||+++++++++++++|.....|++++++++|+++|++++.++++.++++.|.++++.++.....++|..++|+|++.
T Consensus 441 n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 520 (1470)
T PLN03140 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA 520 (1470)
T ss_pred ChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence 99999999999988888887777788888999999999999999888888877766665566666667899999999999
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045902 529 CFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFY 608 (1472)
Q Consensus 529 ~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~ 608 (1472)
|++|++++++||+..+++|+++.+++|+++|++||+++++..+..+++.+.|++||++++.+++++++++.++.+||||+
T Consensus 521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ 600 (1470)
T PLN03140 521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFY 600 (1470)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999999999999998766555567788999999999999999999999999999999
Q ss_pred HhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q 045902 609 KQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVA 688 (1472)
Q Consensus 609 kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a 688 (1472)
|||+.+||++|+|++|++++++|+.++++++|++|+|||+|+.+++++||.|+++++++++++.++|++++++++++.+|
T Consensus 601 ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A 680 (1470)
T PLN03140 601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680 (1470)
T ss_pred HhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCCCCCCCCCCCcccCCcchHHHHHhhcCCc
Q 045902 689 NTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMY 768 (1472)
Q Consensus 689 ~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~ 768 (1472)
+++++++++++++|+||++++++||+||+|++|+||++|+++|+++|||.+.+|.+..+.+ ...+.|..+|+.+|+.
T Consensus 681 ~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~---~~~~~G~~~L~~~g~~ 757 (1470)
T PLN03140 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD---NSTRLGTAVLNIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCC---CCcccHHHHHHhcCcC
Confidence 9999999999999999999999999999999999999999999999999998886432211 2457899999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCcccccCh----hhhhhhc--ccCCCCCCCCC
Q 045902 769 TEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQSNS----HAQQNMR--AADMSPPSTAP 842 (1472)
Q Consensus 769 ~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~ 842 (1472)
..+.|+|+++++|++|+++|+++++++|+|+++.........++..+......... ...+... ......+..
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 835 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSN-- 835 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccccccccccccc--
Confidence 99999999999999999999999999999999766655443211111000000000 0000000 000000000
Q ss_pred cccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEE
Q 045902 843 LFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALV 922 (1472)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 922 (1472)
......... ..... ........++.+|+++.+++|+|++|.++++.+.++.+...+++++|+|||++++||+++|||
T Consensus 836 -~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~ 912 (1470)
T PLN03140 836 -PEGLSKNRD-SSLEA-ANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALM 912 (1470)
T ss_pred -ccccccccc-ccccc-ccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEE
Confidence 000000000 00000 001122345677899999999999999998877666665566678999999999999999999
Q ss_pred cCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc----h---
Q 045902 923 GVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK----D--- 995 (1472)
Q Consensus 923 G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~----~--- 995 (1472)
||||||||||||+|+|+.+++..+|+|.+||++..+..+++.+|||+|+|.+++.+||+|+|.|++.++.+. +
T Consensus 913 G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~ 992 (1470)
T PLN03140 913 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM 992 (1470)
T ss_pred CCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999999999999998777789999999998765566778999999999999999999999998877542 1
Q ss_pred HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEE
Q 045902 996 MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075 (1472)
Q Consensus 996 ~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tv 1075 (1472)
+.++++++.++|.+++|+.+|.+++++|||||||||+||++|+++|+||||||||||||+.++..+++.|++++++|+||
T Consensus 993 ~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tV 1072 (1470)
T PLN03140 993 MFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1072 (1470)
T ss_pred HHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 35789999999999999999988888999999999999999999999999999999999999999999999999889999
Q ss_pred EEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCCCCCCCCCCCcceEEEecchhhhhhhchhHH
Q 045902 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFA 1155 (1472)
Q Consensus 1076 i~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~ 1155 (1472)
|||+|||+.++++.||++++|++||+++|+||.+++++++.+||++++|.++||+++|||||++|+++.+.+.+...||+
T Consensus 1073 I~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~ 1152 (1470)
T PLN03140 1073 VCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFA 1152 (1470)
T ss_pred EEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHH
Confidence 99999999888999999999998899999999998888999999999888889999999999999988765555667999
Q ss_pred HHHhhcHHHHHHHHHHHhhcCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhc
Q 045902 1156 AIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFW 1235 (1472)
Q Consensus 1156 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~ 1235 (1472)
+.|++|++++++++.+++++.+.++.++..++++|++++|+|+++|+||+++++||||.|+.+|+++++++|+++|++||
T Consensus 1153 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~ 1232 (1470)
T PLN03140 1153 EHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFW 1232 (1470)
T ss_pred HHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988888887776666666667889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhHhHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 045902 1236 DKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSL 1315 (1472)
Q Consensus 1236 ~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~ 1315 (1472)
+++++..+++|+++++|++|++++|+++.++++++|.+..||+||+|||++|+|++.+|++|++++|+||.++++++|++
T Consensus 1233 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~ 1312 (1470)
T PLN03140 1233 KVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTL 1312 (1470)
T ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhh
Q 045902 1316 LLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWA 1395 (1472)
Q Consensus 1316 i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~ 1395 (1472)
|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+++++++++++++||||++|+++||+||+|+||+
T Consensus 1313 i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~i 1392 (1470)
T PLN03140 1313 IVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWI 1392 (1470)
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCccceeeccCC-CcccHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 045902 1396 SPVAWTIYGLVTSQIGDKVSEVEVAGE-SGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLNFQRR 1472 (1472)
Q Consensus 1396 sp~~y~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~~~r 1472 (1472)
||++|+++|+++|||+|.+.++.+|+. +..+|++|++++|||+++++|++++++++|+++|++++++++|++|||||
T Consensus 1393 sp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1393 CPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999877777652 24689999999999999999999999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-187 Score=1890.31 Aligned_cols=1289 Identities=30% Similarity=0.518 Sum_probs=1057.0
Q ss_pred hcHHHHHHHHHHHHhhcCCCCC--cceEEEeeeEEEEEEecCCCcCCChhHhHHHHHHhhhhhcccccCCcccceeeece
Q 045902 115 EDNEKFLLRLRERTDRVGIEIP--KIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDV 192 (1472)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~p--~~~v~f~~L~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 192 (1472)
.|.+++++.++++.++.+...| +++|+|+||+|++. ..+...+||++|.+.+.+..+...+. .++++++++||+|+
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV-AADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE-eccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566676665555556555555 99999999999993 44667799999998887664433221 12344567899999
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL-RVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||+++++.. .++.++||+|+|.|++++||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974321 25899999999876432 2456999999999999999999999
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
|+++++.+..+.. ...+.++. +...+.+++.+||++|+||.||++++++|||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~~~-----------------------~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREEYA-----------------------KHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHHHH-----------------------HHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9987764321100 00111100 012356899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecC
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~ 429 (1472)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999986789999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhcCCCCCC---
Q 045902 430 REYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKS--- 506 (1472)
Q Consensus 430 ~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~~~~~~--- 506 (1472)
++++.+||+++||.||+++|+|||++++++++++ +++.. .+...+.++++++++|++++.++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hcccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987643 22211 111124678999999999988777666554321110
Q ss_pred ------------CCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCcccccc
Q 045902 507 ------------KTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLID 574 (1472)
Q Consensus 507 ------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~ 574 (1472)
+..+.....++|..++|+|++.|++|+++.++||+..++.++++.+++|+++|++|++++.+.. +
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---D 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---h
Confidence 0011122345688999999999999999999999999999999999999999999999886543 3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCH
Q 045902 575 GGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSA 654 (1472)
Q Consensus 575 ~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~ 654 (1472)
.+.+.|++||++++.++.++.++..++.+|++|+|||.+++|++++|++|++++++|+.++.+++|++|+|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHH
Q 045902 655 TRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVL 734 (1472)
Q Consensus 655 ~~ff~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~ 734 (1472)
++||.+++++++++.++.++++++++++++..+|+.+++++++++++++||+++.++||+||+|++|+||+.|+++++++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCC--C-CC--------cccC---------CcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 045902 735 NEFLDERWSAPN--P-AR--------FLVD---------EPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIA 794 (1472)
Q Consensus 735 nef~~~~~~~~~--~-~~--------~~~~---------~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~ 794 (1472)
|||.+..+.|.. | ++ ...| +.+.|.++|+. ++.....|+|++++++++|+++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998841 1 00 0011 24578899985 33334567999999999999999999999
Q ss_pred HHHhcCCCcCcccccccccCCCCcccccChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCcccccc
Q 045902 795 ALTYLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQ 874 (1472)
Q Consensus 795 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1472)
+++|.++.......+..+................++...+..... +. .+.... ......... . ..+..
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~---~~~~~~---~~~~~~~~~--~--~~~~~ 756 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVL--GS---TDLTDE---SDDVNDEKD--M--EKESG 756 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhcccccccccccccccccC--CC---Cccccc---ccccccccc--c--cccCC
Confidence 999998665544333222211100000000000000000000000 00 000000 000000000 0 00011
Q ss_pred ceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-eeEEEEEEcC
Q 045902 875 PLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-YIEGSISISG 953 (1472)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~G 953 (1472)
...+.|+|++|.++.. .+++.+|+|||++++|||++||||||||||||||++|+|+.+++ +.+|+|.+||
T Consensus 757 ~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G 827 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG 827 (1394)
T ss_pred CceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECC
Confidence 2357899999887421 13467999999999999999999999999999999999997644 4579999999
Q ss_pred ccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc-------hHHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 954 YPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK-------DMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 954 ~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-------~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
++... .+++.+|||+|+|.+++.+||+|+|.|++.++.+. .+.++++++.+++.+++|+.+|.++. +||||
T Consensus 828 ~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgG 905 (1394)
T TIGR00956 828 RPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVE 905 (1394)
T ss_pred EECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHH
Confidence 98753 46778999999999999999999999998887532 13578999999999999999987653 89999
Q ss_pred HHHHHHHHHHHhhCCC-CccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~-il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+++|.
T Consensus 906 qrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred HhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 9999999999999997 999999999999999999999999998889999999999997778899999999988899999
Q ss_pred cCCCcchhHHHHHHHhCCCCCCCCCCCCCcceEEEecchhhhhhhchhHHHHHhhcHHHHHHHHHHHhhcCCCCCC---C
Q 045902 1106 GPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVETQLNVDFAAIYADSDLYRRNQQLIKELSSPAPGS---K 1182 (1472)
Q Consensus 1106 g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~ 1182 (1472)
|+.+++++++.+||++. |.++||+++|||||++|+++...+.....+|++.|++|+++++..+.++++..+.... .
T Consensus 986 G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1394)
T TIGR00956 986 GDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDN 1064 (1394)
T ss_pred CCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccc
Confidence 99988888999999986 6667999999999999998765444444689999999998887766665554332111 1
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045902 1183 DLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLG 1262 (1472)
Q Consensus 1183 ~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~ 1262 (1472)
+.....+|++|+|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.+
T Consensus 1065 ~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~ 1141 (1394)
T TIGR00956 1065 DPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFN 1141 (1394)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHH
Confidence 111224789999999999999999999999999999999999999999999999986 57899999999999988887
Q ss_pred HHhhhhHhHhHHHhhhHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccHHH-------HHHHH
Q 045902 1263 ASNASSVTSVVAIERTVF-YRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTK-------FLWFY 1334 (1472)
Q Consensus 1263 ~~~~~~v~~~~~~er~v~-~RE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~ 1334 (1472)
+. +.+++|.+..||.+| +|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.+ |++|+
T Consensus 1142 ~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~ 1220 (1394)
T TIGR00956 1142 PL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFW 1220 (1394)
T ss_pred HH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHH
Confidence 76 456677788888886 8999999999999999999999999999999999999999999988866 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCcc
Q 045902 1335 FFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKV 1414 (1472)
Q Consensus 1335 ~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~ 1414 (1472)
++++++.++++++|+++++++|+.++|+.+++++++++++||||++|+++||+||+|+||+||++|+++|++.|||+|.+
T Consensus 1221 ~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~ 1300 (1394)
T TIGR00956 1221 LLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVP 1300 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ceeec------cCCCcccH--------------------------------HHHHHhhcCCccCchhHHHHHHHHHHHHH
Q 045902 1415 SEVEV------AGESGITV--------------------------------KEYLYKHYGYDYDFLGAVAAAHIGFVVLF 1456 (1472)
Q Consensus 1415 ~~~~~------~~~~~~~~--------------------------------~~~l~~~~g~~~~~~~~~~~il~~~~~~f 1456 (1472)
..|.. ..+.++|| .+|++ .+|+++++.|+|++++++|++++
T Consensus 1301 ~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~~~w~~~~i~~~~~~~~ 1379 (1394)
T TIGR00956 1301 VTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYSGRWRNFGIFIAFIFFN 1379 (1394)
T ss_pred eecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCcccccccchhhhhHHHHHH
Confidence 54311 01122334 44544 56899999999999999999988
Q ss_pred HHHHHHHHHhc
Q 045902 1457 FFVFVYGIKFL 1467 (1472)
Q Consensus 1457 ~~~~~~~~~~~ 1467 (1472)
+++++++.+.
T Consensus 1380 -~~~~~~l~~~ 1389 (1394)
T TIGR00956 1380 -IIATVFFYWL 1389 (1394)
T ss_pred -HHHHHhhheE
Confidence 7777777765
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-91 Score=884.74 Aligned_cols=577 Identities=24% Similarity=0.412 Sum_probs=478.2
Q ss_pred cceEEEEeceeeEEeccc----------------hhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 874 QPLSLAFDHVNYFVDMPA----------------EMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
.++.+.|.++.|+++... ..++....++++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 367899999999986442 0111122344678999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc----h---HHHHHHHHHcccccc
Q 045902 938 GRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK----D---MFVEEVMELVEMKAL 1010 (1472)
Q Consensus 938 g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~----~---~~~~~v~~~l~l~~~ 1010 (1472)
|+.+++..+|+|.+||++.... .++.+|||+|++.+++.+||+|++.|.+.++.+. + +.++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999986533 3456899999999999999999999988776432 1 346789999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhh
Q 045902 1011 RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1090 (1472)
Q Consensus 1011 ~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~ 1090 (1472)
+|+.+|+...++||||||||++||++|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999887778999999999999999999999999999999999999999999999998889999999999997789999
Q ss_pred CeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCCCCCCCCCCCcceEEEecchhhhh------h---hchhHHHHHhhc
Q 045902 1091 DELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNAVET------Q---LNVDFAAIYADS 1161 (1472)
Q Consensus 1091 D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~------~---~~~~~~~~~~~s 1161 (1472)
|++++|++ |+++|.|+. +++.+||+++ |. +||+++|||||++|+++...+. . ......+.|++.
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999986 5789999998 54 5899999999999998643110 0 011223344321
Q ss_pred HHHHHHHHHHHhh--cC-CCC-----CCCCCc-ccccccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 045902 1162 DLYRRNQQLIKEL--SS-PAP-----GSKDLY-FTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGM 1232 (1472)
Q Consensus 1162 ~~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1232 (1472)
. .+......+.. .. ..+ ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 001000 11235678999999999999998 99999999999999999999999
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhHhHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 045902 1233 IFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIV 1312 (1472)
Q Consensus 1233 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~ 1312 (1472)
+||+++ ..+++++.|++|++++++++.+++.+++.|+.||+||+|||++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999875 467899999999999999988888889999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 045902 1313 YSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWY 1392 (1472)
Q Consensus 1313 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~ 1392 (1472)
|.+|+|||+|+++++.+||+|+++++++.++++++|+++++++|+.++|+.+++++++++++||||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCccce---eeccCC---CcccHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 045902 1393 YWASPVAWTIYGLVTSQIGDKVSE---VEVAGE---SGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKF 1466 (1472)
Q Consensus 1393 ~~~sp~~y~~~~l~~~~~~~~~~~---~~~~~~---~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~ 1466 (1472)
+|+||++|+++|++.|||++.+.. ..|++. ....|. ++. ..+++....|.++++|++|+++|++++++++++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~-~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCK-FVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCc-cch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876431 223321 111121 222 233445568999999999999999999999999
Q ss_pred ccc
Q 045902 1467 LNF 1469 (1472)
Q Consensus 1467 ~~~ 1469 (1472)
+||
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 886
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-91 Score=884.75 Aligned_cols=560 Identities=29% Similarity=0.484 Sum_probs=489.6
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-YIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987643 3589999999987766677889999999999999999
Q ss_pred HHHHHHHHHcCCCch-------HHHHHHHHHcccccccccccCCCC-CCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 981 YESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPG-VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~-------~~~~~v~~~l~l~~~~~~~~~~~~-~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
+|||.|++.++.+.+ ..++++++.+++.+++|+.+|.++ .++|||||||||+||+||+++|++|+|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 999999998876531 357899999999999999999753 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCCCCCCCCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGY 1132 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~ 1132 (1472)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.||. +++.+||+++ |. +||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCCC
Confidence 999999999999999998899999999999888999999999998 5799999997 5789999998 44 689999
Q ss_pred CCcceEEEecchhhhhh-----hchhHHHHHhhcHHHHHHHHHHHhhcCCCCC---CCCCcccccccchhHHHHHHHHHH
Q 045902 1133 NPATWVLEVSSNAVETQ-----LNVDFAAIYADSDLYRRNQQLIKELSSPAPG---SKDLYFTTKYSQDFITQCKTCFWK 1204 (1472)
Q Consensus 1133 npa~~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Q~~~l~~R 1204 (1472)
|||||++++++...+.+ ...++.+.|++|+.+++..+.......+.++ ..+....++|..+++.|+..|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 99999999876432211 1134566777777665544433322111111 111112346789999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhHhHHHhhhHHHHHh
Q 045902 1205 QHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTVFYRER 1284 (1472)
Q Consensus 1205 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~RE~ 1284 (1472)
+++++||||.+..+|+++++++|+++|++||++++ ++++++++.|++|++++++++.++..+.+.++.||.+|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999986 567899999999999999999888888899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 045902 1285 AAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQIATIL 1364 (1472)
Q Consensus 1285 ~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1364 (1472)
.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCccc-eeeccCC---CcccHHHHHHhhcCCccC
Q 045902 1365 MSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVS-EVEVAGE---SGITVKEYLYKHYGYDYD 1440 (1472)
Q Consensus 1365 ~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~-~~~~~~~---~~~~~~~~l~~~~g~~~~ 1440 (1472)
+++++.++++|+||+++.++||+||+|++|+||++|+++|++.|||++... +|...+. +..++ +++.+.||++.+
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~~ 585 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999988764 3311111 11334 666668999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 045902 1441 FLGAVAAAHIGFVVLFFFVFVYGIKFLNFQRR 1472 (1472)
Q Consensus 1441 ~~~~~~~il~~~~~~f~~~~~~~~~~~~~~~r 1472 (1472)
++|.+++++++|.++|++++++++|+-...+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999998766665
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-90 Score=869.72 Aligned_cols=572 Identities=32% Similarity=0.566 Sum_probs=495.4
Q ss_pred cceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-eeEEEEEEc
Q 045902 874 QPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-YIEGSISIS 952 (1472)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~ 952 (1472)
.+..+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567899999988754321 3478999999999999999999999999999999999998764 689999999
Q ss_pred CccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch-------HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 953 GYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD-------MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 953 G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~-------~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
|++.+.+.+++.+|||+|+|.++|++||+|+|.|+|.+|+|.+ .+++++++.|+|.+++|+++|.++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 9988888899999999999999999999999999999998862 578999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
||||||+||.+|++||+||||||||||||+.++..++++|+++|++|+|||||+|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 699999
Q ss_pred cCCCcchhHHHHHHHhCCCCCCCCCCCCCcceEEEecchh-hhhhhchhHHHH------HhhcHHHHHHHH-HHHhhcCC
Q 045902 1106 GPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSNA-VETQLNVDFAAI------YADSDLYRRNQQ-LIKELSSP 1177 (1472)
Q Consensus 1106 g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~-~~~~~~~~~~~~------~~~s~~~~~~~~-~~~~~~~~ 1177 (1472)
|+. +++.+||++. |.| ||+.+|||||++|+.+.. ..... .+..+. ++..+...+... ..+.+..
T Consensus 253 G~~----~~~~~ff~~~-G~~-~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GFP-CPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLST- 324 (613)
T ss_pred cCH----HHHHHHHHhC-CCC-CCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhccc-
Confidence 997 5789999998 554 999999999999987742 11000 011111 110111111100 0111111
Q ss_pred CCCCCCCcccccccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q 045902 1178 APGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSA 1257 (1472)
Q Consensus 1178 ~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~ 1257 (1472)
... .+.....+||.|+..+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.
T Consensus 325 ---~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 325 ---SKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFI 396 (613)
T ss_pred ---ccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHH
Confidence 111 111127899999999999999999999999999999999999999999999976 456677999999999
Q ss_pred HHHHHHHhhhhHhHhHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHH
Q 045902 1258 VLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFM 1337 (1472)
Q Consensus 1258 ~~~~~~~~~~~v~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~ 1337 (1472)
+.++.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++...|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCcccee
Q 045902 1338 LMCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEV 1417 (1472)
Q Consensus 1338 ~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~ 1417 (1472)
++..+.++++|++++++.||...|..+++++...+++|+||+++.++||+||+|++|+|+++|+++|++.|||++....+
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~ 556 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRC 556 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999722222
Q ss_pred e--ccCCCcccHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 045902 1418 E--VAGESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLNFQR 1471 (1472)
Q Consensus 1418 ~--~~~~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~~~ 1471 (1472)
. ++.....+..++++ +.+++.+..|.++.+++++.++|++++++++++--..+
T Consensus 557 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 557 FLSGNLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred ccCcCCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 11122345666665 58999999999999999999999999999999755443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-89 Score=925.65 Aligned_cols=558 Identities=24% Similarity=0.435 Sum_probs=489.5
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--CeeEEEEEEcCccCCh--hcccceeEEeccCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~ 976 (1472)
+++++|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+..+ ..+++.++|++|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999998632 2468999999987643 234567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCc--------hH---H-HHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 045902 977 NVTIYESLLYSAWLRLPK--------DM---F-VEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~--------~~---~-~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il 1044 (1472)
.+||+|+|.|++.++.+. ++ . ++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998776421 11 2 35689999999999999998888999999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCC
Q 045902 1045 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVP 1123 (1472)
Q Consensus 1045 ~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~~ 1123 (1472)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+|+. +++.+||+++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~l- 305 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKM- 305 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHc-
Confidence 999999999999999999999999875 999999999998889999999999985 799999986 5789999998
Q ss_pred CCCCCCCCCCCcceEEEecchhhhh----------hhchhHHHHHhhcHHHHHHHHHHHhhcCCC---------------
Q 045902 1124 GVPKIRDGYNPATWVLEVSSNAVET----------QLNVDFAAIYADSDLYRRNQQLIKELSSPA--------------- 1178 (1472)
Q Consensus 1124 ~~~~~~~~~npa~~~l~~~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1178 (1472)
|. +||++.|||||+++++++..+. ....++++.|++|+.+++..+.+++.....
T Consensus 306 G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 306 GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred CC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 55 6999999999999998754211 123578999999998877666554322110
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Q 045902 1179 PGSKDLYFTTKYSQDFITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAV 1258 (1472)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1258 (1472)
..++.....+.|..|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011112234688999999999999999999999999999999999999999999999986 4578999999999999
Q ss_pred HHHHHHhhhhHhHhHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHH
Q 045902 1259 LFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFML 1338 (1472)
Q Consensus 1259 ~~~~~~~~~~v~~~~~~er~v~~RE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1338 (1472)
++.++.++..+. .+..||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++
T Consensus 462 ~~~~~~~~~~i~-~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEIA-SMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHHH-HHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 999998876654 4557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCccceee
Q 045902 1339 MCFMYFTLYGMMLVALTPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVE 1418 (1472)
Q Consensus 1339 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~ 1418 (1472)
++.++++++++++++++|+..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|++.|||++...+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765442
Q ss_pred --cc----------------------CCCcccHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045902 1419 --VA----------------------GESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLNF 1469 (1472)
Q Consensus 1419 --~~----------------------~~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1469 (1472)
+| |...+++.+|++..||++++++|++++++++|+++|+++++++++++++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 01 1112467899998899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-88 Score=910.82 Aligned_cols=587 Identities=23% Similarity=0.392 Sum_probs=496.4
Q ss_pred ccceEEEEeceeeEEeccch-----------------hhc-cc---cccccceeeccceeEEeCCeEEEEEcCCCCChhH
Q 045902 873 FQPLSLAFDHVNYFVDMPAE-----------------MKS-QG---IEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTT 931 (1472)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTT 931 (1472)
...+.+.|+|+++..+.... ... .+ .+..++.+|+|||+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 34677899999887652110 000 01 1223577999999999999999999999999999
Q ss_pred HHhhhcCCCCCC-eeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc-----------h----
Q 045902 932 LMDVLAGRKTGG-YIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK-----------D---- 995 (1472)
Q Consensus 932 Ll~~L~g~~~~~-~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-----------~---- 995 (1472)
||++|+|+.++. ..+|+|.+||++..+...++.++||+|+|.|++.+||+|+|.|++.++.+. +
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999987542 358999999998754444677999999999999999999999988765210 0
Q ss_pred -----------------------HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 996 -----------------------MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 996 -----------------------~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 024678999999999999999888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCCCCCCCC
Q 045902 1053 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDG 1131 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~~~~~~~~~~ 1131 (1472)
||+.++..+++.|+++++ .|+|||+++|||+.++++.||++++|.+ |+++|+||. +++.+||+++ |. +||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESC-GF-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHc-CC-CCCCC
Confidence 999999999999999986 4899999999998889999999999985 799999996 5789999998 55 69999
Q ss_pred CCCcceEEEecchhhh-h-----------hhchhHHHHHhhcHHHHHHHHHHHhhcCCCCCCCCCcccccccchhHHHHH
Q 045902 1132 YNPATWVLEVSSNAVE-T-----------QLNVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDFITQCK 1199 (1472)
Q Consensus 1132 ~npa~~~l~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~ 1199 (1472)
.|||||++|+++.... . ....++++.|++|+.+++..+.++.........+.....++|..+++.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 9999999999875322 1 112468899999988776554433211000111111123468999999999
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhHhHHHhhhH
Q 045902 1200 TCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVAIERTV 1279 (1472)
Q Consensus 1200 ~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v 1279 (1472)
.|++|+++.+||||.++..|+++.+++|+++|++||+++.+..+..+.+..+|++|+++++..++++.. ++.+..||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccch
Confidence 999999999999999999999999999999999999998655555566778899999998888776654 5777899999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 045902 1280 FYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVALTPNQQ 1359 (1472)
Q Consensus 1280 ~~RE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~ 1359 (1472)
|+|||.+++|++++|++|++++|+|+.++.+++|.+|+|||+||++++++||.|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCccce-eeccCCCcccHHHHHHhhcCCc
Q 045902 1360 IATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSE-VEVAGESGITVKEYLYKHYGYD 1438 (1472)
Q Consensus 1360 ~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~ 1438 (1472)
+|+.++++++.++++|+||++|+++||+||+|+||+||++|+++|+++|||.+.... +.+.+....++.+|| +.||++
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~ 757 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcC
Confidence 999999999999999999999999999999999999999999999999999765432 112222234455666 678997
Q ss_pred cC--chhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 045902 1439 YD--FLGAVAAAHIGFVVLFFFVFVYGIKFLN 1468 (1472)
Q Consensus 1439 ~~--~~~~~~~il~~~~~~f~~~~~~~~~~~~ 1468 (1472)
.+ |+|+++++|+||+++|.+++++++++++
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 54 6799999999999999999999999987
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=799.78 Aligned_cols=584 Identities=30% Similarity=0.503 Sum_probs=494.5
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCChhHhHHHHHHhhhhhcccccCCcccceeeeceeeEEeCCeEEEEEcCCCCcHHH
Q 045902 135 IPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTT 214 (1472)
Q Consensus 135 ~p~~~v~f~~L~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKST 214 (1472)
...++++|+|+++++... .+..+++|+||||.++|||++||+||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 456789999999987532 114578999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhc
Q 045902 215 LLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA 294 (1472)
Q Consensus 215 LL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1472)
||++|+|+..+...++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+|+++.+.. +++.++
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~k-- 142 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEEK-- 142 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHHH--
Confidence 99999999987677899999999887776677899999999999999999999999999876532 222222
Q ss_pred CCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCC
Q 045902 295 GIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTG 374 (1472)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsg 374 (1472)
+..+|.+++.|||++|+||++|+...|||||||||||+||..|+.+|+|||+||||||
T Consensus 143 ----------------------~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 143 ----------------------RERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ----------------------HHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 2247889999999999999999998999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 045902 375 LDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFL 454 (1472)
Q Consensus 375 LDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl 454 (1472)
||+.++.++++.|+++|+. |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCcc--cchhhhcccCCCCcCCChhHHHHHHH-hchhhhhhhhhhcCCCCCCCCCCCCCCcCcccccHHHHHHHHHH
Q 045902 455 QEVTSRK--DQQQYWCKKNEPYRYVSVPEFVEHFK-TFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFA 531 (1472)
Q Consensus 455 ~ev~s~~--~~~~~~~~~~~~~~~~s~~e~~~~f~-~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 531 (1472)
.++.+.. .+..... ....+..+.++ .....+... ......... . ........++|.|+..+++
T Consensus 280 l~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~---~~~~~~~~s~~~q~~~L~~ 345 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLE-ALEKSLSTS--K---KVEIGTSPSWWTQFKILLK 345 (613)
T ss_pred HHHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHH-HHhhhcccc--c---ccccccCCcHHHHHHHHHH
Confidence 9988843 1110000 00001111111 000000000 000000000 0 0001116799999999999
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHh
Q 045902 532 REWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMFNGMA-ELALTIVRLPAFYKQ 610 (1472)
Q Consensus 532 R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~-~~~~~~~~~~vf~kq 610 (1472)
|.+..++|++.++..|.++.+++++++|.+|++.+.+.... ....|.+||.+.+..+..+. .++....++++|.||
T Consensus 346 R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE 422 (613)
T KOG0061|consen 346 RSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRE 422 (613)
T ss_pred HHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999986544333 25678888888888776666 577888999999999
Q ss_pred hcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 045902 611 RDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANT 690 (1472)
Q Consensus 611 r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~ 690 (1472)
+..+.|+.++|++|+.+.++|+.++.+++|.+++|||+|++++..+|+.+++..++...++.+++.+++++.++...|.+
T Consensus 423 ~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~ 502 (613)
T KOG0061|consen 423 TSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATS 502 (613)
T ss_pred HhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCCCCCCCCCCCcccCCcchHHHHHhhcCCccc
Q 045902 691 LGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTE 770 (1472)
Q Consensus 691 ~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~ 770 (1472)
+++++++.+++++||+++.+.+|.||.|+.|+|+..|++|+++.|||.+....|..... .++...|..+++..++...
T Consensus 503 ~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 580 (613)
T KOG0061|consen 503 LGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN--LCCESTGEDVLKQLGFEDS 580 (613)
T ss_pred hHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC--CcccccHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999974344432211 2567889999999998765
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045902 771 DHMFWICIVALLGFSLFFNLCFIAALTYLD 800 (1472)
Q Consensus 771 ~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~ 800 (1472)
+ .|.++.+++++.++|.++++++|++..
T Consensus 581 ~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 581 S--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred c--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5 689999999999999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-82 Score=803.33 Aligned_cols=573 Identities=26% Similarity=0.465 Sum_probs=486.0
Q ss_pred CcccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 182 ~~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
++.++++|+|+|+.++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.++||+|+|.++++
T Consensus 34 ~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCcc
Confidence 34467899999999999999999999999999999999999877555689999999988654446789999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+|||.|+++++.+.. ..+.++ ...++.+++.+||++++||.||++.
T Consensus 114 lTV~e~l~f~~~~~~~~~-------~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~ 162 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRR-------VTKKEK------------------------RERVDEVLQALGLRKCANTRIGVPG 162 (617)
T ss_pred CcHHHHHHHHHhcCCCCC-------CCHHHH------------------------HHHHHHHHHHcCchhcCcCccCCCC
Confidence 999999999987754321 011111 1135778999999999999999863
Q ss_pred -CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 342 -RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 342 -~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|+
T Consensus 163 ~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~ 241 (617)
T TIGR00955 163 RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMA 241 (617)
T ss_pred CCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEee
Confidence 789999999999999999999999999999999999999999999999986 589999999999999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhc
Q 045902 421 EGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELR 500 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~ 500 (1472)
+|+++|+|+++++.+||+++|++||++.||+||+.++++....... . .....+++.+.|++++.+++..++..
T Consensus 242 ~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~ 314 (617)
T TIGR00955 242 EGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTN 314 (617)
T ss_pred CCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhh
Confidence 9999999999999999999999999999999999999875432110 0 11224566677777665554443332
Q ss_pred CCCCCCC---CCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccc
Q 045902 501 VPYDKSK---THPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGK 577 (1472)
Q Consensus 501 ~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~ 577 (1472)
....... .........++..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+.. +.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~ 391 (617)
T TIGR00955 315 LWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQN 391 (617)
T ss_pred hhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHH
Confidence 1111100 000111234567889999999999999999999999999999999999999999999875443 3345
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHH
Q 045902 578 FYGALFFSLVNVMFNGMAE-LALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATR 656 (1472)
Q Consensus 578 ~~g~lff~l~~~~~~~~~~-~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ 656 (1472)
..|++|+.++..+|.++.. +.....++++|+|||..++|++++|++++.+.++|+.++.+++|.+++|||+|+.+++.+
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 6789999998888876644 556668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHh
Q 045902 657 FFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNE 736 (1472)
Q Consensus 657 ff~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~ne 736 (1472)
||.+++++++.+.++.++++++++++++..+|+.+++++++++++++||+++.++||+||+|++|+||++|+++++++||
T Consensus 472 f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~ne 551 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ 551 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC-CCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045902 737 FLDERW-SAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYL 799 (1472)
Q Consensus 737 f~~~~~-~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~ 799 (1472)
|.+..+ .|...+.. ..|...|..+++.+|+...+ +|.++++++++.++|.++++++|++.
T Consensus 552 f~~~~~~~c~~~~~~-~~c~~~g~~~l~~~g~~~~~--~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 552 WSDVDNIECTSANTT-GPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred hCCCccccccCcCcC-CCCCcChHHHHHhcCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998776 44322111 12445689999999987654 58999999999999999999999874
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-81 Score=791.72 Aligned_cols=609 Identities=22% Similarity=0.337 Sum_probs=473.1
Q ss_pred CCCcceEEEeeeEEEEEEecCCCcCCChhHhHHHHHHhhhhhcccccCCcccceeeeceeeEEeCCeEEEEEcCCCCcHH
Q 045902 134 EIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKT 213 (1472)
Q Consensus 134 ~~p~~~v~f~~L~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKS 213 (1472)
..++++++|+|+++++.......+... +...+......... ..+..++++|+|+|+.++|||+++|+||||||||
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l-~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKS 108 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDE-TRQIQERTILNGVTGMASPGEILAVLGPSGSGKS 108 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccc----cccccccccccccc-cccCCCCeeeeCCEEEEECCEEEEEECCCCCCHH
Confidence 346799999999999754310111110 11111000000000 0112346799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHh
Q 045902 214 TLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKD 293 (1472)
Q Consensus 214 TLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 293 (1472)
|||++|+|+.+++ ..+|+|.+||+++... .++.++||+|+|.+++.+||+||+.|++.++.+.. .++.++
T Consensus 109 TLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~~- 178 (659)
T PLN03211 109 TLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQEK- 178 (659)
T ss_pred HHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHHH-
Confidence 9999999998764 2589999999987542 23569999999999999999999999875532210 001010
Q ss_pred cCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCC
Q 045902 294 AGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373 (1472)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEpts 373 (1472)
...++.+++.+||++|+||.+|+...++|||||||||+||++|+.+|++|+|||||+
T Consensus 179 -----------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPts 235 (659)
T PLN03211 179 -----------------------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235 (659)
T ss_pred -----------------------HHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCC
Confidence 012467899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChHHH
Q 045902 374 GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADF 453 (1472)
Q Consensus 374 gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adf 453 (1472)
|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||
T Consensus 236 gLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf 314 (659)
T PLN03211 236 GLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314 (659)
T ss_pred CcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHH
Confidence 9999999999999999987 589999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhcC---CCCCCC-----CCCC-CCCcCcccccHHH
Q 045902 454 LQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRV---PYDKSK-----THPA-GLVKKRYGISNWE 524 (1472)
Q Consensus 454 l~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~---~~~~~~-----~~~~-~~~~~~~~~s~~~ 524 (1472)
+.++++...+.+.......+ ...+++.+.|++... +...++... +....+ .... ......+..++|+
T Consensus 315 ~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (659)
T PLN03211 315 LLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFN 390 (659)
T ss_pred HHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHH
Confidence 99998864321100000011 112334455543211 111111100 000000 0000 0011234568999
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhhHHHHHHHHHHH-HHHHHHHHHhhh
Q 045902 525 LFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVMF-NGMAELALTIVR 603 (1472)
Q Consensus 525 ~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g~lff~l~~~~~-~~~~~~~~~~~~ 603 (1472)
|+..+++|.++. +|+..+...|+++.+++|+++|++|++.+ . .+.+.+.|++||.+++.++ ..+..++.+..+
T Consensus 391 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~e 464 (659)
T PLN03211 391 QFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQE 464 (659)
T ss_pred HHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888 78888888999999999999999999874 1 2345678999999887655 556777778889
Q ss_pred hHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 045902 604 LPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSR 683 (1472)
Q Consensus 604 ~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~sl~r~iaa~~~ 683 (1472)
|++|+|||..++|++++|++|+++.++|+.++.+++|.+|+|||+|+++++.+||.+++++++.+.++.+++++++++++
T Consensus 465 r~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~ 544 (659)
T PLN03211 465 RAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544 (659)
T ss_pred hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCCC-----CCCCCCC-CcccCCcch
Q 045902 684 TQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDER-----WSAPNPA-RFLVDEPTV 757 (1472)
Q Consensus 684 ~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~~-----~~~~~~~-~~~~~~~~~ 757 (1472)
+..+|+++++++++++++|+||+++ +||+||+|++|+||++|+++++++|||.+.+ ..|..+. .....|...
T Consensus 545 ~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~ 622 (659)
T PLN03211 545 DAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV 622 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc
Confidence 9999999999999999999999996 7999999999999999999999999997653 2343211 000012222
Q ss_pred HHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045902 758 GKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLD 800 (1472)
Q Consensus 758 G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~ 800 (1472)
+...+. ....|.++++|+++.++|.++.+++|++.+
T Consensus 623 ~~~~~~-------~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 623 EEDVAG-------QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhhc-------ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 332322 234788999999999999999999998654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-81 Score=788.74 Aligned_cols=560 Identities=25% Similarity=0.477 Sum_probs=498.4
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCccCChhcccceeEEeccCCCCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-YIEGSISISGYPKKQETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
...++|+|+|+-++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.++...++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3468999999999999999999999999999999999975432 236799999999766444788999999999999999
Q ss_pred HHHHHHHHHHcCCCch--------H----HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCcccc
Q 045902 980 IYESLLYSAWLRLPKD--------M----FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1047 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~--------~----~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LD 1047 (1472)
|+|+|.|+++++.+.. + ..+.+++.+||.+++|+++|+...+|+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999986621 1 356899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCCC
Q 045902 1048 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVP 1126 (1472)
Q Consensus 1048 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~~~~~ 1126 (1472)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.++++.||+|++|.+ |+++|+||. .++.+||+++ |.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~-Gf- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDM-GF- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhc-Cc-
Confidence 999999999999999999999865 899999999999999999999999986 799999997 4789999998 55
Q ss_pred CCCCCCCCcceEEEecchhhhhh-----------h-chhHHHHHhhcHHHHHHHHHHHhhcCCCCCCCCCcccccccchh
Q 045902 1127 KIRDGYNPATWVLEVSSNAVETQ-----------L-NVDFAAIYADSDLYRRNQQLIKELSSPAPGSKDLYFTTKYSQDF 1194 (1472)
Q Consensus 1127 ~~~~~~npa~~~l~~~~~~~~~~-----------~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1194 (1472)
.||+..++|||+.++++...+.+ . ..++++.|.+|+.+++....++.........+.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 68999999999999988322111 1 15789999999998876554433222222233344456899999
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhHhHH
Q 045902 1195 ITQCKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINLLGAMYSAVLFLGASNASSVTSVVA 1274 (1472)
Q Consensus 1195 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~ 1274 (1472)
|.|+++|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++|+++++..++.+.++. ...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~-~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIA-LTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHH-HHH
Confidence 999999999999999999999999999999999999999999983 56778999999999999999998887764 455
Q ss_pred HhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045902 1275 IERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVYSLLLYSMIGFHWEVTKFLWFYFFMLMCFMYFTLYGMMLVAL 1354 (1472)
Q Consensus 1275 ~er~v~~RE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1354 (1472)
..|+||+|||...+|++++|.++..+.++|..++.+++|.+|+||++||.+++++||.|+++++++..+++++.++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCccceee--ccC-----------
Q 045902 1355 TPNQQIATILMSFFLSFWNLFSGFMVPRTQIPIWWRWYYWASPVAWTIYGLVTSQIGDKVSEVE--VAG----------- 1421 (1472)
Q Consensus 1355 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~~~sp~~y~~~~l~~~~~~~~~~~~~--~~~----------- 1421 (1472)
+++...|+.++++.+.+..+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|. .|+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999876653 111
Q ss_pred --------CCcccHHHHHHhhcCCccCchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 045902 1422 --------ESGITVKEYLYKHYGYDYDFLGAVAAAHIGFVVLFFFVFVYGIKFLNFQ 1470 (1472)
Q Consensus 1422 --------~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~~ 1470 (1472)
...+.+.+|++..|+|++.|+|++++|++||.++|.+++.+++.|+|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1123467899999999999999999999999999999999999999853
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-72 Score=709.25 Aligned_cols=776 Identities=22% Similarity=0.288 Sum_probs=422.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 261 (1472)
+..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.+||+++.++.. +..+|.|+|+|.+| .
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~ 440 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-A 440 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhh-c
Confidence 567999999999999999999999999999999999999998 9999999999988764 46899999999877 4
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||+||+.|+-.- .+ .+++.++.|++.++ +. +..|++..||.||+ .
T Consensus 441 ~tI~eNI~~G~~d------------at----------~~~i~~a~k~ana~--------~f---i~~lp~g~~T~vge-~ 486 (1228)
T KOG0055|consen 441 TTIRENIRYGKPD------------AT----------REEIEEAAKAANAH--------DF---ILKLPDGYDTLVGE-R 486 (1228)
T ss_pred ccHHHHHhcCCCc------------cc----------HHHHHHHHHHccHH--------HH---HHhhHHhhcccccC-C
Confidence 6999999886311 00 11222333332221 22 33467778999995 4
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+-.|||||||||+|||||+.+|+|||||||||+||+.++..+.+.|++..+ |+|.|+..|.. .+.+.+|+|++|++
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRL--StIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRL--STIRNADKIAVMEE 562 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeeh--hhhhccCEEEEEEC
Confidence 455999999999999999999999999999999999999999999998864 56777766654 45666999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHH--HHhhCcccchhhhcccCCCCcCCChhHHHHHHHhch----hhhhh
Q 045902 422 GEIVYQGPREYVLDFFESVGFRCPERKGAADFL--QEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFH----VGQKL 495 (1472)
Q Consensus 422 G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl--~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~----~~~~l 495 (1472)
|+||+.|+++|++.. .|. -++.. |+....++..+ .... ..++.....+.+. ..+..
T Consensus 563 G~IvE~G~h~ELi~~---~G~-------Y~~lv~~Q~~~~~~~~~~----~~~~----~~~~~~~s~~~s~~~~~~~~~~ 624 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIAL---GGI-------YSSLVRLQELEKAAEDEE----EEES----LKEERSRSLKSSSSSPSLSRGS 624 (1228)
T ss_pred CEEEEecCHHHHHhc---cch-------HHHHHHHHhhhhhhhccc----cccc----hhhhhhhccccccccccccCCc
Confidence 999999999999862 010 11111 22222111000 0000 0000000000000 00000
Q ss_pred -hhhh--cCCCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccC-Cccc
Q 045902 496 -TDEL--RVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQM-TYGQ 571 (1472)
Q Consensus 496 -~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~-~~~~ 571 (1472)
.... ..+.+.....+ ........++|+.++.+. .+|..+.-.....+.+.....+.+++++.++--... +.+.
T Consensus 625 ~~~~~~~~~~~~e~~~~~--~~~~~~~~s~~~i~k~~~-pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~ 701 (1228)
T KOG0055|consen 625 NRSNLLSVKPEGEDPEEP--VSEEDEKVSFWRIFKLNK-PEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDE 701 (1228)
T ss_pred cccccccccccccccccc--cccccccccHHHHHHhcc-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHH
Confidence 0000 00000000000 001112334554444332 233333322222333344445555555544321111 1111
Q ss_pred cccccchhhHHHHHHH----------HHHHHHHHHHHHHhhhhHHHHH--hhcCCCcchhhHHHHHHHHHhhHHHHHHHH
Q 045902 572 LIDGGKFYGALFFSLV----------NVMFNGMAELALTIVRLPAFYK--QRDFLFFPAWAFALPIWVLRIPLSLMESSI 639 (1472)
Q Consensus 572 ~~~~~~~~g~lff~l~----------~~~~~~~~~~~~~~~~~~vf~k--qr~~~~y~~~ay~la~~i~~iP~~~~~~~i 639 (1472)
.......+..+|..+. ..+|.-+.|....-.|...|.+ ..+..||.----. +....++---
T Consensus 702 ~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~D------ 774 (1228)
T KOG0055|consen 702 LKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATD------ 774 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcc------
Confidence 1111112333333221 2233444454444455555554 2334444322111 1111111100
Q ss_pred HHhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHH
Q 045902 640 WILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWG 719 (1472)
Q Consensus 640 ~~~i~Y~~~gl~~~~~~ff~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~ 719 (1472)
.++.....-..+..+..+.+.......+ ++.-...+| +..+++.+++.++++... .++
T Consensus 775 -----------a~~vr~~v~~rl~~vv~~~~~~~~~iii-af~~~W~la--lv~la~~Pll~~~~~~~~--------~~~ 832 (1228)
T KOG0055|consen 775 -----------ASNVRAAVGDRLSLVVQNIAAVIIGIII-AFIYGWRLA--LVVLATFPLLILSGYLQK--------KFL 832 (1228)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHH--------HHH
Confidence 0000000001111111111111000000 000011111 111122222222222110 011
Q ss_pred HhhcH---HHHHHHHHHHHhhcCCCCCCCCCCCcccCCcchHHHHHhhcC-----C--cccchhHHHHHHHHHHHHHHH-
Q 045902 720 YYVSP---MSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARG-----M--YTEDHMFWICIVALLGFSLFF- 788 (1472)
Q Consensus 720 ~~isp---l~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~~G~~~L~~~~-----~--~~~~~~~w~~i~~l~g~~v~f- 788 (1472)
.-.+. -.|.-.+.+.+|-...--.. ........+.+.+. . .......|.+++.-+...+.|
T Consensus 833 ~~~~~~~~~~~~ea~~iA~eai~NIrTV--------~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~ 904 (1228)
T KOG0055|consen 833 KGFSKDDKKAYEEASKIAIEAVSNIRTV--------AALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFF 904 (1228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 01111122222211100000 00000000110000 0 000112344433333322222
Q ss_pred --HHHHHHHHHhcCCCcCcccccccccCCC------------Ccc--cccC---hhhhhhhcccCCCCCCCCCccccccc
Q 045902 789 --NLCFIAALTYLDPFKETKSVMMEHNDGG------------KSK--KQSN---SHAQQNMRAADMSPPSTAPLFEGIDM 849 (1472)
Q Consensus 789 --~i~~~~aL~~~~~~~~~~~~~~~~~~~~------------~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1472)
.+.++.+...+.. .....++.... ... .... ......+...-...|.
T Consensus 905 ~~A~~f~~G~~Li~~----g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~---------- 970 (1228)
T KOG0055|consen 905 VYALSFWYGARLISN----GEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPT---------- 970 (1228)
T ss_pred HHHHHHHHhHHHHhc----CCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCC----------
Confidence 1222222222211 00000000000 000 0000 0000000000000000
Q ss_pred ccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCCh
Q 045902 850 AVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGK 929 (1472)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGK 929 (1472)
+.... ..+...+.....+.|+|+++.++.. ++.++|+|+|++|++|+.+||+|||||||
T Consensus 971 ----------i~~~~-~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGK 1029 (1228)
T KOG0055|consen 971 ----------IDPDS-TSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGK 1029 (1228)
T ss_pred ----------CCCCC-CCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCH
Confidence 00110 1222333344579999999998753 35689999999999999999999999999
Q ss_pred hHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcc
Q 045902 930 TTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVE 1006 (1472)
Q Consensus 930 TTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~ 1006 (1472)
||.+.+|-+.+. +..|.|.+||.+++. ...|+.+|.|.|+|.+|. -|++||+.|+ ..+ -. .+|+++.+.
T Consensus 1030 STvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG-~~~-vs---~~eIi~Aak 1101 (1228)
T KOG0055|consen 1030 STVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYG-SEE-VS---EEEIIEAAK 1101 (1228)
T ss_pred HHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhcc-CCC-CC---HHHHHHHHH
Confidence 999999998776 569999999998754 567789999999999985 5999999998 222 22 344444444
Q ss_pred cccc----------cccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 045902 1007 MKAL----------RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076 (1472)
Q Consensus 1007 l~~~----------~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi 1076 (1472)
+.+. .|+.+|..|. +||||||||++||||+++||+||+|||.||+||+++.+.|+++|.+.. .|||.|
T Consensus 1102 ~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~I 1179 (1228)
T KOG0055|consen 1102 LANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTI 1179 (1228)
T ss_pred HhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEE
Confidence 4333 4666776554 799999999999999999999999999999999999999999999874 589999
Q ss_pred EEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1077 CTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1077 ~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+++|+++ ..+.+|.|.|+++ |+|++.|+-
T Consensus 1180 vIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1180 VIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred EEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 9999976 6788999999985 899999974
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-68 Score=719.49 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=181.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++..+. .+++.+|+|||+.|++||++||+||||||||||+++|+|..++ .+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 467788766542 1125799999999999999999999999999999999998774 589999999886
Q ss_pred Ch--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHH
Q 045902 957 KQ--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR 1030 (1472)
Q Consensus 957 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqR 1030 (1472)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. +.+ +.++++++.+++.+.+|+.++ .||||||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqR 2078 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRK 2078 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHH
Confidence 42 2345679999999999999999999998776653 222 345678899999888777654 799999999
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|.+ |+++..|+.
T Consensus 2079 LslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~ 2154 (2272)
T TIGR01257 2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI 2154 (2272)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999878999999999976 57778999999985 799999986
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-66 Score=667.84 Aligned_cols=761 Identities=22% Similarity=0.284 Sum_probs=409.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
.+.|+|+|+.|++|+++||+||.|||||+||.+|.|.++.. +|+|.++|. ++||+|+++++. .|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs----------iaYv~Q~pWI~n-gTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS----------VAYVPQQPWIQN-GTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe----------EEEeccccHhhC-CcHH
Confidence 34899999999999999999999999999999999999875 999999883 899999999995 6999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
|||.|+.... ..||+...+.|..++|..+ |+.+-.|.|| |++.+|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~--------------------------------Lp~GD~TeIG-ErGinL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEI--------------------------------LPFGDLTEIG-ERGINL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhh--------------------------------cCCCCcceec-CCccCC
Confidence 9999986542 3455555555555444333 3344578888 677889
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEE
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv 425 (1472)
||||||||++|||++++++|++||+|.|++|+++..+|++..-. ....++|+|+++||- +....+|.|++|++|+|+
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~-~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR-GLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH-hhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEe
Confidence 99999999999999999999999999999999999999864432 234679999998864 677899999999999999
Q ss_pred EecChhHHHH---HHHhcCCCCCCCCChHHHHHHhhCcccchhhh-cccCCCCcCCChhHHHHHHHhchhhhhhhhhhcC
Q 045902 426 YQGPREYVLD---FFESVGFRCPERKGAADFLQEVTSRKDQQQYW-CKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRV 501 (1472)
Q Consensus 426 ~~G~~~~~~~---~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~-~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~ 501 (1472)
..|+++|+.+ +|+.+ ....+.++.. ...+.+....+..+. +. +.........+. .
T Consensus 722 ~~Gty~el~~~~~~~~~l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~--~ 780 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-----------------AHEEESEQEEEASEKDLESGESSRES-ES-RSLESLSSEEEK--S 780 (1381)
T ss_pred cccCHHHHHhcchhHHHH-----------------hhccchhhccccccccccccccccch-hh-hhhhhhcccccc--c
Confidence 9999999973 23222 1100000000 000000000000000 00 000000000000 0
Q ss_pred CCCCCC-CCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHH--HHHHHHH-HHHHhhheeeeccCCccccccccc
Q 045902 502 PYDKSK-THPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVF--KTFQITI-MSIIAFTVYLRTQMTYGQLIDGGK 577 (1472)
Q Consensus 502 ~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~--~~~~~~i-~ali~g~lf~~~~~~~~~~~~~~~ 577 (1472)
...+.+ .........+.+.-.|..++..++- . ..+.... -+.+... +..+.+..|+....+.+.......
T Consensus 781 ~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a-----~-~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~ 854 (1381)
T KOG0054|consen 781 KDEKEEEDKLVQEEERETGKVSWSVYKKYIKA-----A-GGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT 854 (1381)
T ss_pred ccccchhhHHHHHHHHhcCEeeHHHHHHHHHh-----c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Confidence 000000 0000000001222233333322221 0 1111111 1111111 112222233332222211000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHH
Q 045902 578 FYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRF 657 (1472)
Q Consensus 578 ~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f 657 (1472)
....++..++.++ ++........+ ++.+...-.+..-.+.... ..+.
T Consensus 855 -~~~~~~~~vY~~l-~~~~~~~~~~r----------------s~~~~~~~l~aS~~Lh~~m---------------l~~I 901 (1381)
T KOG0054|consen 855 -VSTSFYLGVYALL-GVASSLLTLLR----------------SFLFAKGGLKASRKLHDKL---------------LNSI 901 (1381)
T ss_pred -CCcchHHHHHHHH-HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 0111111111111 00000000000 0000000011111111111 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHH-------HHhhcHHHHHHH
Q 045902 658 FRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIW-------GYYVSPMSYGQN 730 (1472)
Q Consensus 658 f~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W-------~~~ispl~Y~~~ 730 (1472)
++..+.+|.++..|..++||..++...+..-......++..++.+.|.++......||+.+ ++|.--..|--.
T Consensus 902 lrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~t 981 (1381)
T KOG0054|consen 902 LRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLAT 981 (1381)
T ss_pred HhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888899999988887655433333333333333333333333333334322 222222222221
Q ss_pred HHHHHhhcCCCCCCCCCCCcccCCcchHHHHHhhcCC--------------cccch------hHHHHHHH-HHHHHHHHH
Q 045902 731 AIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGM--------------YTEDH------MFWICIVA-LLGFSLFFN 789 (1472)
Q Consensus 731 al~~nef~~~~~~~~~~~~~~~~~~~~G~~~L~~~~~--------------~~~~~------~~w~~i~~-l~g~~v~f~ 789 (1472)
+--+....+..-+ +.... ...+..|...+++++- +...+ ..|.++-. ++|-.+++.
T Consensus 982 sReLkRLesitRS-Pi~sh--~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~ 1058 (1381)
T KOG0054|consen 982 SRELKRLESITRS-PIYSH--FSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLI 1058 (1381)
T ss_pred hHHHHHhhhcccc-hHHHh--HHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111000 00000 0112223223322221 11111 12443311 122222222
Q ss_pred HHHHHHHHhcCCCcCccc--cccc-----cc-------CCCCccccc-ChhhhhhhcccCCCCCCCCCcccccccccccC
Q 045902 790 LCFIAALTYLDPFKETKS--VMME-----HN-------DGGKSKKQS-NSHAQQNMRAADMSPPSTAPLFEGIDMAVMNT 854 (1472)
Q Consensus 790 i~~~~aL~~~~~~~~~~~--~~~~-----~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (1472)
.+....+..-........ .++. .. ..+.+.+.. -++..+-. ..++..|. . .+.
T Consensus 1059 ~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~-----~~~~E~p~-~-~~~----- 1126 (1381)
T KOG0054|consen 1059 AALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYT-----DIPSEAPL-E-IEE----- 1126 (1381)
T ss_pred HHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHh-----cCCCCCCC-C-CcC-----
Confidence 221111111110000000 0000 00 000000000 00000000 00000000 0 000
Q ss_pred CCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHh
Q 045902 855 PDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMD 934 (1472)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~ 934 (1472)
.. .....+ ....+.|+|++..+. ++-..+|||||++|+|||++||+|++|||||||.+
T Consensus 1127 --~~-pp~~WP--------~~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~ 1184 (1381)
T KOG0054|consen 1127 --SR-PPPSWP--------SKGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLIL 1184 (1381)
T ss_pred --CC-CCCCCC--------CCCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHH
Confidence 00 001111 223678898876653 23357999999999999999999999999999999
Q ss_pred hhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc
Q 045902 935 VLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR 1011 (1472)
Q Consensus 935 ~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~ 1011 (1472)
+|.+... +.+|+|.|||.++.+ ...|++++.+||||.+|.. |+|.||.-.. +-..+++.+.|+..+++
T Consensus 1185 aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~~IW~ALe~~~Lk 1255 (1381)
T KOG0054|consen 1185 ALFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDDEIWEALERCQLK 1255 (1381)
T ss_pred HHHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc------ccCHHHHHHHHHHhChH
Confidence 9999876 458999999998754 5678899999999999865 9999985211 11123444444444444
Q ss_pred ccccCC---------CCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCc
Q 045902 1012 NSLVGL---------PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082 (1472)
Q Consensus 1012 ~~~~~~---------~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~ 1082 (1472)
+..... +++.++|.||||.+|+||||+++++||+|||+|+++|+++...|+++||+-.+ ++|||++.|+.
T Consensus 1256 ~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl 1334 (1381)
T KOG0054|consen 1256 DVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRL 1334 (1381)
T ss_pred HHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeecc
Confidence 433222 24578999999999999999999999999999999999999999999999764 79999999997
Q ss_pred cHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1083 SIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1083 ~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+ ..-.+|||+||++ |+++++|.+
T Consensus 1335 ~--TVmd~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1335 N--TVMDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred c--hhhhcCeEEEeeC-CeEeecCCh
Confidence 6 4556799999986 789888876
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=600.90 Aligned_cols=470 Identities=27% Similarity=0.329 Sum_probs=349.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-CCceeEEEEcCeeCCCCCC-------CceEEEEcCCC-
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-LRVSGRVTYCGHELTEFVP-------QRTCAYISQHD- 256 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 256 (1472)
..+++||||.+.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999876 4568999999997765543 25799999996
Q ss_pred -CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccc
Q 045902 257 -LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADI 335 (1472)
Q Consensus 257 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 335 (1472)
.+.|-+||.+.+.-..+..+...+ .+. ...+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~---------~ea------------------------~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSR---------AEA------------------------RKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccH---------HHH------------------------HHHHHHHHHHcCCCChhhh
Confidence 556778999988765544332110 000 1123568899999987655
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
+.++..|||||||||.||+||+.+|++|++|||||+||..++.+|.+.|+++.++.|.+++++.|. ..-+.+++|+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD-l~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD-LGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC-HHHHHHhcCe
Confidence 568889999999999999999999999999999999999999999999999998889888887665 4577899999
Q ss_pred EEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhh
Q 045902 416 IILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKL 495 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l 495 (1472)
|+||++|++|+.|+.+++..- | ..||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p-------------------------~hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------P-------------------------QHPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------c-------------------------CCcccH-----------------HH
Confidence 999999999999999988541 0 111100 00
Q ss_pred hhhhcCCCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccc
Q 045902 496 TDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDG 575 (1472)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~ 575 (1472)
.+. .|... .
T Consensus 255 l~a--~p~~~-----------------------------------------------------------------~---- 263 (539)
T COG1123 255 LAA--VPRLG-----------------------------------------------------------------D---- 263 (539)
T ss_pred Hhh--CCCcc-----------------------------------------------------------------c----
Confidence 000 00000 0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHH
Q 045902 576 GKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSAT 655 (1472)
Q Consensus 576 ~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~ 655 (1472)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHH
Q 045902 656 RFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLN 735 (1472)
Q Consensus 656 ~ff~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~n 735 (1472)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCCCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCC
Q 045902 736 EFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDG 815 (1472)
Q Consensus 736 ef~~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~ 815 (1472)
..... .
T Consensus 264 ------~~~~~-~------------------------------------------------------------------- 269 (539)
T COG1123 264 ------EKIIR-L------------------------------------------------------------------- 269 (539)
T ss_pred ------ccccc-c-------------------------------------------------------------------
Confidence 00000 0
Q ss_pred CCcccccChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhc
Q 045902 816 GKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKS 895 (1472)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (1472)
....+ .+ ....+.++|++-.+..+....
T Consensus 270 ------------------~~~~~--------------------------------~~-~~~ll~V~~l~k~y~~~~~~~- 297 (539)
T COG1123 270 ------------------PRRGP--------------------------------LR-AEPLLSVRNLSKRYGSRKGLF- 297 (539)
T ss_pred ------------------ccccc--------------------------------cc-cCceeEeeeeeeeeccccccc-
Confidence 00000 00 001123333332222111000
Q ss_pred cccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC--Ch---hcccceeEEecc
Q 045902 896 QGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK--KQ---ETFARISGYCEQ 970 (1472)
Q Consensus 896 ~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~--~~---~~~~~~~gyv~Q 970 (1472)
....+...+++||||++++||++||+|+||||||||.++|+|+.++ .+|.|.++|.+. .. ...++.+-+++|
T Consensus 298 -~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQ 374 (539)
T COG1123 298 -VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374 (539)
T ss_pred -cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEe
Confidence 0001235799999999999999999999999999999999999874 589999999762 11 234456677777
Q ss_pred CC--CCCCCCCHHHHHHHHHHcCCCc--h---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 045902 971 ND--IHSPNVTIYESLLYSAWLRLPK--D---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043 (1472)
Q Consensus 971 ~~--~~~~~lTv~e~l~~~~~l~~~~--~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~i 1043 (1472)
|+ .+.|.+||.+.+.-........ . +++.++++.++|.. +..... +..||||||||++|||||+.+|++
T Consensus 375 dp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~--~~l~ry--P~elSGGQrQRvaIARALa~~P~l 450 (539)
T COG1123 375 DPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP--EFLDRY--PHELSGGQRQRVAIARALALEPKL 450 (539)
T ss_pred CcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH--HHHhcC--chhcCcchhHHHHHHHHHhcCCCE
Confidence 76 5789999999997655433221 1 35677777777763 222223 358999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1044 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1044 l~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|++|||||.||+..+..|.++|+++.++ |.|.|++|||.+. +.+.|||+++|.+ |+++..||.
T Consensus 451 li~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 451 LILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred EEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 9999999999999999999999999866 9999999999763 6678999999985 899999975
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=691.37 Aligned_cols=212 Identities=22% Similarity=0.286 Sum_probs=176.0
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 35889999887731 12469999999999999999999999999999999999887 458999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.+ ..+|+.++||||++.++.. |++|||.+.. ...++.+.++++..++.+.. |+.++.. ..+|||
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~---~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~-G~nLSg 1377 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN---EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEA-GENFSV 1377 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---CCCHHHHHHHHHHcCcHHHHHhCccccCccccCC-CCCCCH
Confidence 653 5678889999999999875 9999997642 22345566666666664332 3344432 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....||+|++|++ |+++..
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~-G~IvE~ 1453 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA-GRVVEF 1453 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999985 4899999999965 5677999999985 799999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 1454 Gt~~ 1457 (1622)
T PLN03130 1454 DTPE 1457 (1622)
T ss_pred CCHH
Confidence 9863
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=679.68 Aligned_cols=216 Identities=22% Similarity=0.328 Sum_probs=177.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-------------
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------------- 943 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------------- 943 (1472)
.+.|+||+|.++.. ++.++|+|+||+|+||+++||+||||||||||+++|.|..++.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 58899999887421 1246999999999999999999999999999999999987641
Q ss_pred ---------------------------------------eeEEEEEEcCccCC---hhcccceeEEeccCCCCCCCCCHH
Q 045902 944 ---------------------------------------YIEGSISISGYPKK---QETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 944 ---------------------------------------~~~G~i~i~G~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|.+||.++. ...+++.+|||+|++.+| ..|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 14899999999864 356788999999999988 57999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
|||.|+.. ...++.++++++..++.++ .|+.+|..| ..||||||||++|||||+++|+||+||||||+||
T Consensus 1314 eNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1314 ENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred HHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 99998621 1234556666766665543 356666443 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEecC---cE-EEEEcCC
Q 045902 1055 ARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GH-VIYAGPL 1108 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g---g~-v~~~g~~ 1108 (1472)
+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|++++|++| |+ ++..|+.
T Consensus 1391 ~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1391 SNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 999999999999986 35899999999964 67889999999872 56 5578874
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-64 Score=690.15 Aligned_cols=210 Identities=21% Similarity=0.289 Sum_probs=175.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.|+|+++.++. +...+|+|||++|+|||.+||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5889999887731 22469999999999999999999999999999999999887 4589999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSgG 1026 (1472)
.+ ..+|+.++||||++.+++. |++|||.+.. ...++.+.++++..++.+.. |+.++.. ..+||||
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~LSgG 1375 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG-GENFSVG 1375 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCC-CCCCCHH
Confidence 43 5678889999999999875 9999997532 22345566667766665432 3344433 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++ |+++..|
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~-G~ivE~G 1451 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS-GQVLEYD 1451 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999875 4799999999964 5677999999985 7999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 1452 t~ 1453 (1495)
T PLN03232 1452 SP 1453 (1495)
T ss_pred CH
Confidence 75
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=615.90 Aligned_cols=451 Identities=23% Similarity=0.322 Sum_probs=340.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK--SLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 259 (1472)
+.+|+|+|+.+++||+++|+||||||||||||+|+|.+++ + +|+|.++|+++..... ++.++||+|++.++
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 3699999999999999999999999999999999999885 4 8999999998865432 35699999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.+.......+. ....+ . ...++.+++.+||++..|+.+++
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~-------~~~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~ 143 (506)
T PRK13549 95 KELSVLENIFLGNEITPGGI-------MDYDA----------M--------------YLRAQKLLAQLKLDINPATPVGN 143 (506)
T ss_pred CCCcHHHHhhhcccccccCC-------cCHHH----------H--------------HHHHHHHHHHcCCCCCcccchhh
Confidence 99999999988643211000 00000 0 01235678899998888877765
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|
T Consensus 144 -----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l 216 (506)
T PRK13549 144 -----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVI 216 (506)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999975 578888877654 4777899999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhh
Q 045902 420 SEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDEL 499 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~ 499 (1472)
++|++++.|+.+++.. .+. .+.+
T Consensus 217 ~~G~i~~~~~~~~~~~---------------~~~-----------------------------~~~~------------- 239 (506)
T PRK13549 217 RDGRHIGTRPAAGMTE---------------DDI-----------------------------ITMM------------- 239 (506)
T ss_pred ECCEEeeecccccCCH---------------HHH-----------------------------HHHh-------------
Confidence 9999998886432200 000 0000
Q ss_pred cCCCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchh
Q 045902 500 RVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFY 579 (1472)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~ 579 (1472)
. + . ..
T Consensus 240 ---------------------------------------------------------------~--~--~-~~------- 244 (506)
T PRK13549 240 ---------------------------------------------------------------V--G--R-EL------- 244 (506)
T ss_pred ---------------------------------------------------------------h--C--c-Cc-------
Confidence 0 0 0 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHH
Q 045902 580 GALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFR 659 (1472)
Q Consensus 580 g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~ 659 (1472)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcC
Q 045902 660 QLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLD 739 (1472)
Q Consensus 660 ~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~ 739 (1472)
+ ..
T Consensus 245 -----------------------------------------------------~----------------------~~-- 247 (506)
T PRK13549 245 -----------------------------------------------------T----------------------AL-- 247 (506)
T ss_pred -----------------------------------------------------c----------------------cc--
Confidence 0 00
Q ss_pred CCCCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCcc
Q 045902 740 ERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSK 819 (1472)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~ 819 (1472)
. +. .
T Consensus 248 --~----~~--------------------------------------------------------------------~-- 251 (506)
T PRK13549 248 --Y----PR--------------------------------------------------------------------E-- 251 (506)
T ss_pred --c----cc--------------------------------------------------------------------c--
Confidence 0 00 0
Q ss_pred cccChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccc
Q 045902 820 KQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIE 899 (1472)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1472)
. . . . ....+.++|+++.++.
T Consensus 252 --------------~--~-~---------------------------~------~~~~l~~~~l~~~~~~---------- 271 (506)
T PRK13549 252 --------------P--H-T---------------------------I------GEVILEVRNLTAWDPV---------- 271 (506)
T ss_pred --------------c--c-C---------------------------C------CCceEEEecCcccccc----------
Confidence 0 0 0 0 0001344444432210
Q ss_pred cccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCC---
Q 045902 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQND--- 972 (1472)
Q Consensus 900 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~--- 972 (1472)
.+++.+|+||||+|++||++||+||||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|++
T Consensus 272 ~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 350 (506)
T PRK13549 272 NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRD 350 (506)
T ss_pred ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhC
Confidence 0124589999999999999999999999999999999998652 148999999987532 12345689999985
Q ss_pred CCCCCCCHHHHHHHHHH--cCC----Cch---HHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 045902 973 IHSPNVTIYESLLYSAW--LRL----PKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS 1042 (1472)
Q Consensus 973 ~~~~~lTv~e~l~~~~~--l~~----~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~ 1042 (1472)
.+++.+||.|++.+... ... +.. ..++++++.+++. +..++.+ ..|||||||||+||++|+.+|+
T Consensus 351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~ 425 (506)
T PRK13549 351 GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPK 425 (506)
T ss_pred CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCC
Confidence 46788999999986531 111 111 3466788888875 4555543 4799999999999999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1043 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1043 il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
+|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|.+ |+++..|+.++
T Consensus 426 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 426 ILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred EEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 99999999999999999999999999888999999999976 47788999999986 78888887654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-63 Score=620.64 Aligned_cols=451 Identities=23% Similarity=0.314 Sum_probs=339.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 36999999999999999999999999999999999999887 8999999998865432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.++...... .+.. ...... +. ...++.+++.+||++..|+.+++
T Consensus 95 ~tv~e~l~~~~~~~~~--~~~~-~~~~~~----------~~--------------~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTKK--VCGV-NIIDWR----------EM--------------RVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhccccccc--cccc-cccCHH----------HH--------------HHHHHHHHHHcCCCCCcccchhh--
Confidence 9999999875321000 0000 000000 00 01235678999999888877765
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.+++|++++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd-~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHK-LAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976 47888887765 4577789999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhcC
Q 045902 422 GEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRV 501 (1472)
Q Consensus 422 G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~ 501 (1472)
|++++.|+++++.. .+. .+..
T Consensus 221 G~i~~~g~~~~~~~---------------~~~-----------------------------~~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSN---------------DDI-----------------------------VRLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCH---------------HHH-----------------------------HHHh---------------
Confidence 99999887654210 000 0000
Q ss_pred CCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhhH
Q 045902 502 PYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGA 581 (1472)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g~ 581 (1472)
+ + . ..
T Consensus 242 ------------------------------------------------------------~---~--~-~~--------- 246 (510)
T PRK09700 242 ------------------------------------------------------------V---G--R-EL--------- 246 (510)
T ss_pred ------------------------------------------------------------c---C--C-Cc---------
Confidence 0 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHHH
Q 045902 582 LFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQL 661 (1472)
Q Consensus 582 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 661 (1472)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCCC
Q 045902 662 LAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDER 741 (1472)
Q Consensus 662 l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~~ 741 (1472)
...+
T Consensus 247 ------------------------------------------------------------------------~~~~---- 250 (510)
T PRK09700 247 ------------------------------------------------------------------------QNRF---- 250 (510)
T ss_pred ------------------------------------------------------------------------cccc----
Confidence 0000
Q ss_pred CCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCcccc
Q 045902 742 WSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQ 821 (1472)
Q Consensus 742 ~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1472)
+. . .
T Consensus 251 -----~~-----~--------------------------------------------------------------~---- 254 (510)
T PRK09700 251 -----NA-----M--------------------------------------------------------------K---- 254 (510)
T ss_pred -----cc-----c--------------------------------------------------------------c----
Confidence 00 0 0
Q ss_pred cChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccccc
Q 045902 822 SNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEEN 901 (1472)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1472)
. .... . ..+..+.++|++.. +
T Consensus 255 ------------~-~~~~---------------------~-----------~~~~~l~~~~l~~~-------------~- 275 (510)
T PRK09700 255 ------------E-NVSN---------------------L-----------AHETVFEVRNVTSR-------------D- 275 (510)
T ss_pred ------------c-cccc---------------------C-----------CCCcEEEEeCcccc-------------C-
Confidence 0 0000 0 00012455555431 1
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccC---CCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQN---DIH 974 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~---~~~ 974 (1472)
..+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|+ ..+
T Consensus 276 -~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (510)
T PRK09700 276 -RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGF 352 (510)
T ss_pred -CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCC
Confidence 1389999999999999999999999999999999998763 58999999987532 1234568999998 457
Q ss_pred CCCCCHHHHHHHHHHcC---------C-Cc-h--HHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhC
Q 045902 975 SPNVTIYESLLYSAWLR---------L-PK-D--MFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVAN 1040 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~---------~-~~-~--~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~ 1040 (1472)
++.+||.|++.+....+ . .. + ..++++++.+++. +..++.+ ..|||||||||+||++|+.+
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~ 427 (510)
T PRK09700 353 FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCC 427 (510)
T ss_pred cCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcC
Confidence 88899999998643210 0 11 1 2356778888885 5555543 47999999999999999999
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1041 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1041 p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+||+|||||+|||+.++..+++.|++++++|.|||++|||+. ++.+.||++++|++ |+++..++.
T Consensus 428 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 428 PEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999999999999999999999999878999999999976 57788999999986 688887764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=623.68 Aligned_cols=198 Identities=23% Similarity=0.273 Sum_probs=166.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCC--CC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQND--IH 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~--~~ 974 (1472)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .+
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 469999999999999999999999999999999999876 358999999987532 12356799999997 57
Q ss_pred CCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccC
Q 045902 975 SPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDE 1048 (1472)
++.+||.|++.+....+. ... ..++++++.+++. ...++. +..|||||||||+|||||+.+|++|||||
T Consensus 415 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllDE 489 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIADE 489 (623)
T ss_pred CCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 889999999987643321 111 3466778888874 344443 34799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1049 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1049 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
||+|||+.++..++++|++++++ |.|||++|||++ .+.+.||++++|.+ |++++.|+..
T Consensus 490 Pts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 490 AVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999765 899999999986 47788999999985 7899988753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=613.57 Aligned_cols=443 Identities=21% Similarity=0.352 Sum_probs=338.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999887 8999999998754321 3469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.|+......... ....+ . ...++.+++.+||++..|..+++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~------~~~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGR------IDWKK----------M--------------YAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccccCc------cCHHH----------H--------------HHHHHHHHHHcCCCCCccCchhh--
Confidence 9999999886432100000 00000 0 00135578999999888877765
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.+++|+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999975 478888877654 577889999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhcC
Q 045902 422 GEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRV 501 (1472)
Q Consensus 422 G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~ 501 (1472)
|+++..|+.+++.. ++..+.+.
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~~-------------- 238 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMMV-------------- 238 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHhc--------------
Confidence 99998776432100 00000000
Q ss_pred CCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhhH
Q 045902 502 PYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGA 581 (1472)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g~ 581 (1472)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK10762 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHHH
Q 045902 582 LFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQL 661 (1472)
Q Consensus 582 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 661 (1472)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK10762 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCCC
Q 045902 662 LAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDER 741 (1472)
Q Consensus 662 l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~~ 741 (1472)
+..
T Consensus 239 -----------------------------------------------------------------------------~~~ 241 (501)
T PRK10762 239 -----------------------------------------------------------------------------GRK 241 (501)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 000
Q ss_pred CCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCcccc
Q 045902 742 WSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQ 821 (1472)
Q Consensus 742 ~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1472)
.....+.
T Consensus 242 ~~~~~~~------------------------------------------------------------------------- 248 (501)
T PRK10762 242 LEDQYPR------------------------------------------------------------------------- 248 (501)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred cChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccccc
Q 045902 822 SNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEEN 901 (1472)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1472)
...+ + .+..+.++|++
T Consensus 249 -------------~~~~---------------------------------~-~~~~l~~~~l~----------------- 264 (501)
T PRK10762 249 -------------LDKA---------------------------------P-GEVRLKVDNLS----------------- 264 (501)
T ss_pred -------------cccC---------------------------------C-CCcEEEEeCcc-----------------
Confidence 0000 0 00123445543
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCC---CC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQND---IH 974 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~---~~ 974 (1472)
..+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.+||++|++ .+
T Consensus 265 -~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 341 (501)
T PRK10762 265 -GPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGL 341 (501)
T ss_pred -cCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCC
Confidence 1269999999999999999999999999999999998763 58999999987532 12345689999996 46
Q ss_pred CCCCCHHHHHHHHHH--c-C----CCc---hHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 045902 975 SPNVTIYESLLYSAW--L-R----LPK---DMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~--l-~----~~~---~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~i 1043 (1472)
++.+||.|++.+... . . ... ...++++++.+++. +..++.+ ..|||||||||+||++|+.+|++
T Consensus 342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~l 416 (501)
T PRK10762 342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKV 416 (501)
T ss_pred cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCE
Confidence 788999999986431 1 1 111 13456778888874 4555543 47999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1044 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1044 l~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|+..+
T Consensus 417 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 417 LILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred EEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999999999999999999878999999999986 57788999999985 78888887654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-62 Score=611.58 Aligned_cols=196 Identities=24% Similarity=0.340 Sum_probs=163.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---h---cccceeEEeccCC--CC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---E---TFARISGYCEQND--IH 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~---~~~~~~gyv~Q~~--~~ 974 (1472)
+.+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|.++.. . .+++.+||++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999864 48999999987532 1 1345689999996 47
Q ss_pred CCCCCHHHHHHHHHHcC---CCc---hHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCcccc
Q 045902 975 SPNVTIYESLLYSAWLR---LPK---DMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1047 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~---~~~---~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LD 1047 (1472)
++.+||.|++.+....+ .+. +..++++++.+++. ...+.. +..|||||||||+||++|+.+|++|+||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllD 450 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILD 450 (529)
T ss_pred CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 78899999998864322 121 13456778888875 344543 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1048 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1048 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.||++++|++ |+++..|+.
T Consensus 451 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 451 EPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999999999999999865 899999999976 46778999999986 788888874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=664.42 Aligned_cols=211 Identities=20% Similarity=0.228 Sum_probs=175.8
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 35889999888742 12369999999999999999999999999999999999877 458999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.+ ..+|+.++||||++.+++. |++|||.... ...++.+.++++..++.+.- |+.++.. ..+|||
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~LSg 1424 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEG-GENLSV 1424 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC-CCcCCH
Confidence 753 5678889999999999976 9999996321 22345566677776665432 4444433 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....+|+|++|++ |+++..
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~-G~IvE~ 1500 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK-GEVAEF 1500 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999999999999999875 4799999999964 6778999999985 799999
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 1501 G~~ 1503 (1522)
T TIGR00957 1501 GAP 1503 (1522)
T ss_pred CCH
Confidence 986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=609.52 Aligned_cols=197 Identities=25% Similarity=0.400 Sum_probs=162.2
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEc-Ccc---CCh------hcccceeEEeccCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS-GYP---KKQ------ETFARISGYCEQND 972 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-G~~---~~~------~~~~~~~gyv~Q~~ 972 (1472)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++ |.+ ... ...++.+||++|++
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 469999999999999999999999999999999999876 358999996 532 111 12345689999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCch---HHHHHHHHHccccc-----ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 045902 973 IHSPNVTIYESLLYSAWLRLPKD---MFVEEVMELVEMKA-----LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044 (1472)
Q Consensus 973 ~~~~~lTv~e~l~~~~~l~~~~~---~~~~~v~~~l~l~~-----~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il 1044 (1472)
.+++.+||.|++.+...+..+.+ ..++++++.+++.+ ..++. +..|||||||||+||+||+.+|++|
T Consensus 375 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lL 449 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKEPRIV 449 (520)
T ss_pred ccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 88899999999987543322222 34566778888754 23333 3579999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1045 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1045 ~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+|||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.||++++|++ |+++..|+.
T Consensus 450 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 450 ILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999765 899999999986 47788999999985 788888864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=606.46 Aligned_cols=447 Identities=20% Similarity=0.281 Sum_probs=337.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999887 8999999998765432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.|.... .+ + . ...++.+++.+||++..|+.+++
T Consensus 101 ~tv~e~l~~~~~~------~~---~----~-------------------------~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPK------RQ---A----S-------------------------MQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhccccc------ch---H----H-------------------------HHHHHHHHHHcCCCccccCChhh--
Confidence 9999999875310 00 0 0 00134578899998888877765
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.+++|+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976 478888877654 467789999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhcC
Q 045902 422 GEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRV 501 (1472)
Q Consensus 422 G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~ 501 (1472)
|++++.|+.+++... +.+ +.+...
T Consensus 216 G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~~------------ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------DII-----------------------------QAITPA------------ 239 (510)
T ss_pred CEEEEecChHHcCHH---------------HHH-----------------------------HHHhCc------------
Confidence 999999987653210 000 000000
Q ss_pred CCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhhH
Q 045902 502 PYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGA 581 (1472)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g~ 581 (1472)
. .. .....
T Consensus 240 ----~-~~------------------------------------------------------------~~~~~------- 247 (510)
T PRK15439 240 ----A-RE------------------------------------------------------------KSLSA------- 247 (510)
T ss_pred ----c-cc------------------------------------------------------------ccccc-------
Confidence 0 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHHH
Q 045902 582 LFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQL 661 (1472)
Q Consensus 582 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 661 (1472)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCCC
Q 045902 662 LAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDER 741 (1472)
Q Consensus 662 l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~~ 741 (1472)
.. .
T Consensus 248 --------------------------------------------------~~---------------------------~ 250 (510)
T PRK15439 248 --------------------------------------------------SQ---------------------------K 250 (510)
T ss_pred --------------------------------------------------cc---------------------------c
Confidence 00 0
Q ss_pred CCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCcccc
Q 045902 742 WSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQ 821 (1472)
Q Consensus 742 ~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1472)
.. . .+ +
T Consensus 251 ~~----~-----------------~~---------------------------------~-------------------- 256 (510)
T PRK15439 251 LW----L-----------------EL---------------------------------P-------------------- 256 (510)
T ss_pred cc----c-----------------cc---------------------------------c--------------------
Confidence 00 0 00 0
Q ss_pred cChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccccc
Q 045902 822 SNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEEN 901 (1472)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1472)
....+. . ..+..+..+|++.
T Consensus 257 ------------~~~~~~---------------------~-----------~~~~~l~~~~l~~---------------- 276 (510)
T PRK15439 257 ------------GNRRQQ---------------------A-----------AGAPVLTVEDLTG---------------- 276 (510)
T ss_pred ------------cccccc---------------------C-----------CCCceEEEeCCCC----------------
Confidence 000000 0 0001244555431
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh----cccceeEEeccCC---CC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE----TFARISGYCEQND---IH 974 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~----~~~~~~gyv~Q~~---~~ 974 (1472)
.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+
T Consensus 277 --~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l 352 (510)
T PRK15439 277 --EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGL 352 (510)
T ss_pred --CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCc
Confidence 158999999999999999999999999999999998763 489999999875321 1234689999984 47
Q ss_pred CCCCCHHHHHHHHHH----cCCCc---hHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccc
Q 045902 975 SPNVTIYESLLYSAW----LRLPK---DMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1046 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~----l~~~~---~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~L 1046 (1472)
++.+|+.|++..... ..... ...++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||+|
T Consensus 353 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlL 427 (510)
T PRK15439 353 YLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIV 427 (510)
T ss_pred cCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEE
Confidence 788999999853211 11111 13456778888885 5555543 47999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1047 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1047 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|..+.
T Consensus 428 DEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 428 DEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred CCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999999888999999999986 57788999999985 78888886643
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=603.11 Aligned_cols=444 Identities=22% Similarity=0.308 Sum_probs=335.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999887 8999999998754321 3579999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.++......+. .... +. ...++.+++.+||++..++.+++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~~~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~~-- 140 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------VNRR----------LL--------------NYEAREQLEHLGVDIDPDTPLKY-- 140 (501)
T ss_pred CCHHHHHHhcccccccCC-------CCHH----------HH--------------HHHHHHHHHHcCCCCCcCCchhh--
Confidence 999999988532100000 0000 00 01235578899998777766654
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 141 ---LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKD 215 (501)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999875 578888887765 477789999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhcC
Q 045902 422 GEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRV 501 (1472)
Q Consensus 422 G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~~ 501 (1472)
|+++..++..+. .+.++..+.+
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~~~~~--------------- 237 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQLVQAM--------------- 237 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHHHHHh---------------
Confidence 999865431000 0000000000
Q ss_pred CCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhhH
Q 045902 502 PYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGA 581 (1472)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g~ 581 (1472)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T PRK11288 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHHH
Q 045902 582 LFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQL 661 (1472)
Q Consensus 582 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 661 (1472)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T PRK11288 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCCC
Q 045902 662 LAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDER 741 (1472)
Q Consensus 662 l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~~ 741 (1472)
.+..
T Consensus 238 ----------------------------------------------------------------------------~~~~ 241 (501)
T PRK11288 238 ----------------------------------------------------------------------------VGRE 241 (501)
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 0000
Q ss_pred CCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCcccc
Q 045902 742 WSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKKQ 821 (1472)
Q Consensus 742 ~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1472)
. .. .
T Consensus 242 ------~----~~--------------------------------------------------------------~---- 245 (501)
T PRK11288 242 ------I----GD--------------------------------------------------------------I---- 245 (501)
T ss_pred ------c----cc--------------------------------------------------------------c----
Confidence 0 00 0
Q ss_pred cChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccccc
Q 045902 822 SNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEEN 901 (1472)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1472)
. ... +. . ..+..+.++|+++
T Consensus 246 --~---------~~~-~~--------------------------~------~~~~~l~~~~~~~---------------- 265 (501)
T PRK11288 246 --Y---------GYR-PR--------------------------P------LGEVRLRLDGLKG---------------- 265 (501)
T ss_pred --c---------ccc-cc--------------------------C------CCCcEEEEecccc----------------
Confidence 0 000 00 0 0001244555431
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCC---CC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQND---IH 974 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~---~~ 974 (1472)
..+++|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++ .+
T Consensus 266 -~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 342 (501)
T PRK11288 266 -PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGI 342 (501)
T ss_pred -CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCC
Confidence 148999999999999999999999999999999999876 458999999987532 12345689999986 47
Q ss_pred CCCCCHHHHHHHHHHcC-------CCc---hHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 045902 975 SPNVTIYESLLYSAWLR-------LPK---DMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~-------~~~---~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~i 1043 (1472)
++.+|+.|++.+..... ... ...++++++.+++. +..++.+ ..|||||||||+||++|+.+|++
T Consensus 343 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~l 417 (501)
T PRK11288 343 IPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKV 417 (501)
T ss_pred cCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCE
Confidence 88899999997643211 011 13456777888873 4555543 47999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1044 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1044 l~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
|||||||+|||+.++..+++.|+++++.|.|||++|||++ ++.+.+|++++|.+ |++++.|+.++
T Consensus 418 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 418 ILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred EEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999999999888999999999986 57789999999985 78889887754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-61 Score=600.04 Aligned_cols=452 Identities=20% Similarity=0.295 Sum_probs=334.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.+++. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999998751 028999999998865432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccc-cccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICA-DIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-dt~vg~~ 340 (1472)
+||+||+.+.......+... ... +. ...++.+++.+||++.. ++.++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~------~~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~~-- 140 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRM------AYN----------AM--------------YLRAKNLLRELQLDADNVTRPVG-- 140 (500)
T ss_pred CcHHHHHHhhcccccccccc------CHH----------HH--------------HHHHHHHHHHcCCCCCcccCchh--
Confidence 99999998864321000000 000 00 01235678899998654 44455
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|+ ..++.+++|+|++|+
T Consensus 141 ---~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd-~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 141 ---DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHK-LNEVKAVCDTICVIR 215 (500)
T ss_pred ---hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc-HHHHHHhCCEEEEEe
Confidence 4999999999999999999999999999999999999999999999975 57888887765 457778999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhc
Q 045902 421 EGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELR 500 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~ 500 (1472)
+|++++.|+.++... ++..+.+
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~-------------- 237 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDIITMM-------------- 237 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHHHHHH--------------
Confidence 999987664321100 0000000
Q ss_pred CCCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhh
Q 045902 501 VPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYG 580 (1472)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g 580 (1472)
T Consensus 238 -------------------------------------------------------------------------------- 237 (500)
T TIGR02633 238 -------------------------------------------------------------------------------- 237 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHH
Q 045902 581 ALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQ 660 (1472)
Q Consensus 581 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 660 (1472)
.+.
T Consensus 238 -------------------------------------------------------------------~~~---------- 240 (500)
T TIGR02633 238 -------------------------------------------------------------------VGR---------- 240 (500)
T ss_pred -------------------------------------------------------------------hCc----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCC
Q 045902 661 LLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDE 740 (1472)
Q Consensus 661 ~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~ 740 (1472)
+ .+. .+
T Consensus 241 -----------------------------------------------~---~~~---------------------~~--- 246 (500)
T TIGR02633 241 -----------------------------------------------E---ITS---------------------LY--- 246 (500)
T ss_pred -----------------------------------------------c---ccc---------------------cc---
Confidence 0 000 00
Q ss_pred CCCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCccc
Q 045902 741 RWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKK 820 (1472)
Q Consensus 741 ~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1472)
+.
T Consensus 247 ------~~------------------------------------------------------------------------ 248 (500)
T TIGR02633 247 ------PH------------------------------------------------------------------------ 248 (500)
T ss_pred ------cc------------------------------------------------------------------------
Confidence 00
Q ss_pred ccChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhcccccc
Q 045902 821 QSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEE 900 (1472)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1472)
...+. .+..+.++|+++.... .
T Consensus 249 --------------~~~~~----------------------------------~~~~l~~~~l~~~~~~----------~ 270 (500)
T TIGR02633 249 --------------EPHEI----------------------------------GDVILEARNLTCWDVI----------N 270 (500)
T ss_pred --------------cccCC----------------------------------CCceEEEeCCcccccc----------c
Confidence 00000 0002344554432100 0
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCC---C
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQND---I 973 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~---~ 973 (1472)
+++.+|+|+||+|++||++||+|||||||||||++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .
T Consensus 271 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (500)
T TIGR02633 271 PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHG 349 (500)
T ss_pred ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCC
Confidence 124589999999999999999999999999999999998752 148999999987532 22345689999995 5
Q ss_pred CCCCCCHHHHHHHHHH--cC----CCch---HHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 045902 974 HSPNVTIYESLLYSAW--LR----LPKD---MFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~--l~----~~~~---~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~i 1043 (1472)
+++.+||+|++.+... .. .+.. ..++++++.+++.+ ..++.+ ..|||||||||+||++|+.+|++
T Consensus 350 l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~l 424 (500)
T TIGR02633 350 IVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRV 424 (500)
T ss_pred cCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCE
Confidence 7889999999987531 11 1111 34567788888753 344443 47999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1044 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1044 l~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|.+ |+++..++.
T Consensus 425 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 425 LILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred EEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 9999999999999999999999999888999999999986 57788999999985 678877754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=593.19 Aligned_cols=442 Identities=19% Similarity=0.265 Sum_probs=332.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999887 8999999998764322 3569999999988999
Q ss_pred CCHHHHHHHhhh-ccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 262 MTVRETLDFSGR-CLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
+||+||+.++.. ..+... ... +. ...++.+++.+||++..++.+++
T Consensus 88 ~tv~~~l~~~~~~~~~~~~--------~~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~~- 134 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFV--------DQD----------KM--------------YRDTKAIFDELDIDIDPRAKVAT- 134 (491)
T ss_pred CCHHHHhhccccccccccc--------CHH----------HH--------------HHHHHHHHHHcCCCCCccCchhh-
Confidence 999999987532 111000 000 00 00135578899998877776654
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.+++|+|++|+
T Consensus 135 ----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~ 208 (491)
T PRK10982 135 ----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILR 208 (491)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 578888877654 57778999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhc
Q 045902 421 EGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELR 500 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~ 500 (1472)
+|+++..|+.+++.. ++..+.+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~-------------- 230 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAMM-------------- 230 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHHH--------------
Confidence 999998876532100 0000000
Q ss_pred CCCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhh
Q 045902 501 VPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYG 580 (1472)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g 580 (1472)
T Consensus 231 -------------------------------------------------------------------------------- 230 (491)
T PRK10982 231 -------------------------------------------------------------------------------- 230 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHH
Q 045902 581 ALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQ 660 (1472)
Q Consensus 581 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 660 (1472)
T Consensus 231 -------------------------------------------------------------------------------- 230 (491)
T PRK10982 231 -------------------------------------------------------------------------------- 230 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCC
Q 045902 661 LLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDE 740 (1472)
Q Consensus 661 ~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~ 740 (1472)
.+.
T Consensus 231 -----------------------------------------------------------------------------~~~ 233 (491)
T PRK10982 231 -----------------------------------------------------------------------------VGR 233 (491)
T ss_pred -----------------------------------------------------------------------------hCC
Confidence 000
Q ss_pred CCCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCccc
Q 045902 741 RWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKK 820 (1472)
Q Consensus 741 ~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1472)
... .. .
T Consensus 234 ~~~---~~-----------------------------------------------------~------------------ 239 (491)
T PRK10982 234 SLT---QR-----------------------------------------------------F------------------ 239 (491)
T ss_pred Ccc---cc-----------------------------------------------------c------------------
Confidence 000 00 0
Q ss_pred ccChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhcccccc
Q 045902 821 QSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEE 900 (1472)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1472)
.. ... . ..+..+.++|+++.
T Consensus 240 -------------~~-~~~---------------------~-----------~~~~~i~~~~l~~~-------------- 259 (491)
T PRK10982 240 -------------PD-KEN---------------------K-----------PGEVILEVRNLTSL-------------- 259 (491)
T ss_pred -------------cc-ccC---------------------C-----------CCCcEEEEeCcccc--------------
Confidence 00 000 0 00112455665442
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh----cccceeEEeccCC---C
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE----TFARISGYCEQND---I 973 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~----~~~~~~gyv~Q~~---~ 973 (1472)
.+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+. .
T Consensus 260 -~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~ 336 (491)
T PRK10982 260 -RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTG 336 (491)
T ss_pred -cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCC
Confidence 1248999999999999999999999999999999999876 3589999999875421 2245589999985 3
Q ss_pred CCCCCCHHHHHHHH-----HHc-C-CCc---hHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 045902 974 HSPNVTIYESLLYS-----AWL-R-LPK---DMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS 1042 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~-----~~l-~-~~~---~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~ 1042 (1472)
+++.+|+.++..+. ... . .+. ...++++++.+++. +..++. +..|||||||||+||++|+.+|+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~ 411 (491)
T PRK10982 337 IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPE 411 (491)
T ss_pred cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCC
Confidence 57888887763221 111 1 111 13355677777764 333443 34799999999999999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1043 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1043 il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|.+ |+++..++.
T Consensus 412 illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 412 ILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred EEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 99999999999999999999999999888999999999986 47789999999986 688876654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=641.96 Aligned_cols=211 Identities=23% Similarity=0.250 Sum_probs=176.2
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46889999887731 22459999999999999999999999999999999999887 458999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.. ..+++.+|||||++.++.. |++|||... ....++.+.++++..++.+.. |+.+|.. ..+|||
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~---~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~-G~nLSg 1448 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF---LEASSAEVWAALELVGLRERVASESEGIDSRVLEG-GSNYSV 1448 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc---cCCCHHHHHHHHHHCCChHHHhhCcccccccccCC-cCcCCH
Confidence 643 5678899999999999875 999999642 122345667777777765542 4445443 357999
Q ss_pred HHHHHHHHHHHHhhC-CCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~-p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||||++|||||+++ |+||+||||||+||+.+.+.|++.|++.. +++|||+++|++ +....||+|++|++ |+++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~-G~VvE 1524 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMDH-GAVAE 1524 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999996 89999999999999999999999999874 479999999996 46788999999985 79999
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|+.
T Consensus 1525 ~Gt~ 1528 (1560)
T PTZ00243 1525 MGSP 1528 (1560)
T ss_pred ECCH
Confidence 9975
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=634.46 Aligned_cols=210 Identities=21% Similarity=0.263 Sum_probs=175.4
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|+|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 36889999988742 23579999999999999999999999999999999999875 47999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSg 1025 (1472)
+.. ..+++.++|+||++.+++. |++|||.... .-.++.+.++++.+++.+. .|+.++. +..+|||
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~---~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSg 1356 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE---QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSN 1356 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc---CCCHHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCH
Confidence 753 5677889999999999975 9999996422 1234566777777776543 2444443 2357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....||+|++|++ |+++..
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~ 1432 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQY 1432 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999875 4799999999964 5677999999985 789988
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|++
T Consensus 1433 g~p 1435 (1490)
T TIGR01271 1433 DSI 1435 (1490)
T ss_pred CCH
Confidence 875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=582.80 Aligned_cols=195 Identities=19% Similarity=0.225 Sum_probs=160.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCC--C--
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLH--H-- 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~--~-- 259 (1472)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 5999999999999999999999999999999999999887 8999999977643321 2458999998542 1
Q ss_pred ----CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccc
Q 045902 260 ----GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADI 335 (1472)
Q Consensus 260 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 335 (1472)
..+||+|++.+.. + . ...++.+++.+||++..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~-------------~----~-------------------------~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV-------------K----D-------------------------PARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch-------------h----H-------------------------HHHHHHHHHHcCCHhhhhC
Confidence 1467777764310 0 0 0013457889999888887
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.+++|+
T Consensus 132 ~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~ 204 (490)
T PRK10938 132 RFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQF 204 (490)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCE
Confidence 7765 999999999999999999999999999999999999999999999976 478888887764 577789999
Q ss_pred EEEecCCeEEEecChhHH
Q 045902 416 IILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~ 433 (1472)
|++|++|+++.+|+.+++
T Consensus 205 v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 205 AGVLADCTLAETGEREEI 222 (490)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999886554
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=564.76 Aligned_cols=199 Identities=21% Similarity=0.318 Sum_probs=161.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 47778877654 23469999999999999999999999999999999999876 3589999954 2
Q ss_pred ChhcccceeEEeccCC-CCCCCCCHHHHHHHHHHcCC-C-chHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHH
Q 045902 957 KQETFARISGYCEQND-IHSPNVTIYESLLYSAWLRL-P-KDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~~-~-~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
..+||++|+. .+++.+||.|++.+...... . .+...+++++.+++.+ ..+.. +..|||||||||+
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKK-----VGVLSGGERNRLH 455 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1489999996 67788999999987643221 1 1233456778887753 33443 3479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-EEcC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI-YAGP 1107 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~-~~g~ 1107 (1472)
||++|+.+|++|+|||||+|||+.++..+++.|+++. | |||++||+++ .+.+.||++++|++||++. +.|+
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCC
Confidence 9999999999999999999999999999999999873 4 8999999976 4777899999998766765 5554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=502.19 Aligned_cols=465 Identities=23% Similarity=0.333 Sum_probs=349.5
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CCCceeEEEEcCeeCCCCCCC-------ceEEEEcC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK--SLRVSGRVTYCGHELTEFVPQ-------RTCAYISQ 254 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q 254 (1472)
....++++|||.+++||.++|+|.||||||-..+.+.|+++. ....+|+|.|+|+++-....+ ..|++|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999876 345689999999998655432 36999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccc
Q 045902 255 HD--LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC 332 (1472)
Q Consensus 255 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 332 (1472)
++ .+.|-.|+...+.-..++... +++++. +..+-++|+..|+.+-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~~~A------------------------r~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSRAAA------------------------RARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccHHHH------------------------HHHHHHHHHHcCCCch
Confidence 97 566777888777655544211 111111 1123446777888765
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc
Q 045902 333 ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL 412 (1472)
Q Consensus 333 ~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~ 412 (1472)
...+ +.++..|||||||||.||.||+.+|++|+-||||++||.....+|.++|+++.+..|..+++..| ...-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITH-DL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH-DLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEec-cHHHHHHh
Confidence 4433 46778899999999999999999999999999999999999999999999999988888887654 56677889
Q ss_pred cCeEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhh
Q 045902 413 FDDIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVG 492 (1472)
Q Consensus 413 fD~iilL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~ 492 (1472)
+|+|+||.+|+++++|+.+.+.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999999876531 1110 000
Q ss_pred hhhhhhhcCCCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCcccc
Q 045902 493 QKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQL 572 (1472)
Q Consensus 493 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~ 572 (1472)
|.++.
T Consensus 255 ---------------------------------------r~Ll~------------------------------------ 259 (534)
T COG4172 255 ---------------------------------------RKLLA------------------------------------ 259 (534)
T ss_pred ---------------------------------------HHHHh------------------------------------
Confidence 00000
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 045902 573 IDGGKFYGALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAP 652 (1472)
Q Consensus 573 ~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~ 652 (1472)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHH
Q 045902 653 SATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAI 732 (1472)
Q Consensus 653 ~~~~ff~~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al 732 (1472)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCCCCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccc
Q 045902 733 VLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEH 812 (1472)
Q Consensus 733 ~~nef~~~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~ 812 (1472)
..|.
T Consensus 260 ------------aeP~---------------------------------------------------------------- 263 (534)
T COG4172 260 ------------AEPS---------------------------------------------------------------- 263 (534)
T ss_pred ------------cCCC----------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCCcccccChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccch
Q 045902 813 NDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAE 892 (1472)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1472)
....+. .+..++.+..+++...++.+..
T Consensus 264 ---------------------g~~~p~-------------------------------~~~~~~ll~~~~v~v~f~i~~g 291 (534)
T COG4172 264 ---------------------GDPPPL-------------------------------PEDAPVLLEVEDLRVWFPIKGG 291 (534)
T ss_pred ---------------------CCCCCC-------------------------------CCCCCceEEecceEEEEecCCc
Confidence 000000 0001123334444444333221
Q ss_pred hhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeE
Q 045902 893 MKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISG 966 (1472)
Q Consensus 893 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~g 966 (1472)
.-.. ..+...++++||++.++||.+||+|.||||||||=.+|.++.++ +|+|.++|.++.. ...++.+-
T Consensus 292 ~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQ 366 (534)
T COG4172 292 FLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQ 366 (534)
T ss_pred cccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhce
Confidence 1111 12346799999999999999999999999999999999998763 5999999998753 23567789
Q ss_pred EeccCC--CCCCCCCHHHHHHHHHHcCCC---c---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 045902 967 YCEQND--IHSPNVTIYESLLYSAWLRLP---K---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV 1038 (1472)
Q Consensus 967 yv~Q~~--~~~~~lTv~e~l~~~~~l~~~---~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~ 1038 (1472)
.|+||+ .+.|.+||.|-+.-+.....+ . ++++.++++.+||.. ++....| ..+|||||||++|||||+
T Consensus 367 vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp--~~r~RYP--hEFSGGQRQRIAIARAli 442 (534)
T COG4172 367 VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALI 442 (534)
T ss_pred EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh--hHhhcCC--cccCcchhhHHHHHHHHh
Confidence 999998 477999999998776655432 2 245667777777764 3333344 579999999999999999
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
-+|++++||||||.||-.-+.+|+++|+++.++ |.+-++++||.. -+-.+||+++||++ |+|+..||.
T Consensus 443 LkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 443 LKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred cCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 999999999999999999999999999999754 899999999975 35568999999985 899999985
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=565.26 Aligned_cols=198 Identities=18% Similarity=0.266 Sum_probs=161.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGF-------------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEee-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 46778877654 23469999999999999999999999999999999999876 35899999873
Q ss_pred ChhcccceeEEeccCCC--CCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHH
Q 045902 957 KQETFARISGYCEQNDI--HSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTI 1033 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~i 1033 (1472)
+.+||++|+.. +.+.+|+.|++.+... ....+..++++++.+++. +..+.. +..||||||||++|
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~l 449 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ-EGDDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGGEKGRMLF 449 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhcc-CCccHHHHHHHHHHcCCChhHhcCc-----ccccCHHHHHHHHH
Confidence 45899999864 4567999999864211 111234567788888873 444544 34799999999999
Q ss_pred HHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-EEcCC
Q 045902 1034 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI-YAGPL 1108 (1472)
Q Consensus 1034 A~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~-~~g~~ 1108 (1472)
|++|+.+|++|+|||||+|||+.++..+++.|+++ +.|||++||+++ .+.+.||++++|++ |+++ +.|+.
T Consensus 450 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 450 GKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence 99999999999999999999999999999999987 459999999976 46778999999986 5665 77764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=566.79 Aligned_cols=199 Identities=21% Similarity=0.315 Sum_probs=160.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|||++|++|+++||+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 36677776654 23469999999999999999999999999999999999876 35899999542
Q ss_pred ChhcccceeEEeccCC-CCCCCCCHHHHHHHHHHcC-CC-chHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHH
Q 045902 957 KQETFARISGYCEQND-IHSPNVTIYESLLYSAWLR-LP-KDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~-~~-~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
..+||++|+. .+++.+||.|++.+..... .. .+...+++++.+++.+ ..+.. +..|||||||||+
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVH 453 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1489999986 4778899999998764322 11 1233456788888753 33443 3479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-EEcC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI-YAGP 1107 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~-~~g~ 1107 (1472)
||++|+.+|++|+|||||+|||+.++..+++.|+++. .|||++||+++ .+.+.||++++|++||++. +.|+
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 9999999999999999999999999999999999883 48999999976 4677899999998766765 5554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-55 Score=548.11 Aligned_cols=197 Identities=22% Similarity=0.266 Sum_probs=162.6
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
.|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.++ ..++|++|+..+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 4899999999999999999999999999999999876 358999885 1479999998888899999999
Q ss_pred HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 985 LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 985 ~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
.+.... .......+++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 422 ~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~ 495 (590)
T PRK13409 422 RSITDD-LGSSYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA 495 (590)
T ss_pred HHHhhh-cChHHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 875321 122345678899999887766654 47999999999999999999999999999999999999999999
Q ss_pred HHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcc---hhHHHHHHHhC
Q 045902 1065 VRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQ---SHKLVEYFEAV 1122 (1472)
Q Consensus 1065 l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~---~~~~~~~f~~~ 1122 (1472)
|++++++ |+|||+++||+. .+...+|++++|+ | ++...|..... ...+..++..+
T Consensus 496 l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 496 IRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeecCCchhHHHHHHHHHHHc
Confidence 9999764 899999999976 4677899999996 3 66666654321 12344556665
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=539.46 Aligned_cols=200 Identities=24% Similarity=0.338 Sum_probs=158.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|+|++|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 46677776654 23569999999999999999999999999999999999876 35899998 4321
Q ss_pred ChhcccceeEEeccCC-CCCCCCCHHHHHHHHHHcCC-C-chHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHH
Q 045902 957 KQETFARISGYCEQND-IHSPNVTIYESLLYSAWLRL-P-KDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~~-~-~~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
.+||++|+. .+++.+||.|++.+...... . ....+.++++.+++. +..++. +..|||||||||+
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 489999975 57889999999987532111 1 123345566666664 233443 3479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-cCcEEEEEcCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-RGGHVIYAGPL 1108 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-~gg~v~~~g~~ 1108 (1472)
||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||+++++. +|..+.|.|+.
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 999999999999999999999999999999999886 459999999975 4667899999997 55555666654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=541.80 Aligned_cols=197 Identities=21% Similarity=0.323 Sum_probs=156.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|+|++|++|+++||+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 46777877654 23569999999999999999999999999999999999876 45899999741
Q ss_pred ChhcccceeEEeccCC--CCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHHH
Q 045902 957 KQETFARISGYCEQND--IHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLTI 1033 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~i 1033 (1472)
..+||++|+. .+.+..|+.+++... ........+.++++.+++.. ..+..+ ..|||||||||+|
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~L 441 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLARL--APQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVL 441 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHHh--CchhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHH
Confidence 2589999974 345667888776321 01111245667777777742 344443 4799999999999
Q ss_pred HHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-EEcCC
Q 045902 1034 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI-YAGPL 1108 (1472)
Q Consensus 1034 A~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~-~~g~~ 1108 (1472)
|++|+.+|++|+|||||+|||+.+...+.+.|+++ . .|||++|||+. .+...||++++|.+ |+++ +.|+.
T Consensus 442 a~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 442 ALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 99999999999999999999999999999999987 3 49999999976 47778999999986 6665 78875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-52 Score=492.03 Aligned_cols=444 Identities=24% Similarity=0.362 Sum_probs=336.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC----ceEEEEcCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ----RTCAYISQHDLHHG 260 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 260 (1472)
..++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++..-..|+ ..|+.|.|+..+.|
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 457999999999999999999999999999999999999998 99999999998765553 46899999999999
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
+|||.|||-++....... .. +.++. | ......+|+.+|++...|+.|++
T Consensus 97 ~LsVaeNifLgre~~~~~---g~---id~~~--------------m----------~~~A~~~l~~lg~~~~~~~~v~~- 145 (500)
T COG1129 97 NLSVAENIFLGREPTRRF---GL---IDRKA--------------M----------RRRARELLARLGLDIDPDTLVGD- 145 (500)
T ss_pred CccHHHHhhcccccccCC---Cc---cCHHH--------------H----------HHHHHHHHHHcCCCCChhhhhhh-
Confidence 999999997654322100 00 00000 0 11235678999997668888887
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
||+||||-|.||||+..++++++|||||+.|+...+..+++.++++.. .|.++|... |..+|+++++|+|.||.
T Consensus 146 ----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~IS-Hrl~Ei~~i~DritVlR 219 (500)
T COG1129 146 ----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYIS-HRLDEVFEIADRITVLR 219 (500)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEc-CcHHHHHHhcCEEEEEe
Confidence 999999999999999999999999999999999999999999999975 678877755 57889999999999999
Q ss_pred CCeEEEecCh-hHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhh
Q 045902 421 EGEIVYQGPR-EYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDEL 499 (1472)
Q Consensus 421 ~G~iv~~G~~-~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~ 499 (1472)
+|+.+..++. .+.- .+++.+
T Consensus 220 DG~~v~~~~~~~~~~--------------------------------------------~~~lv~--------------- 240 (500)
T COG1129 220 DGRVVGTRPTAAETS--------------------------------------------EDELVR--------------- 240 (500)
T ss_pred CCEEeeecccccCCC--------------------------------------------HHHHHH---------------
Confidence 9999876652 2110 000000
Q ss_pred cCCCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchh
Q 045902 500 RVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFY 579 (1472)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~ 579 (1472)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHH
Q 045902 580 GALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFR 659 (1472)
Q Consensus 580 g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~ 659 (1472)
.|+|=
T Consensus 241 ------------------------------------------------------------------~MvGr--------- 245 (500)
T COG1129 241 ------------------------------------------------------------------LMVGR--------- 245 (500)
T ss_pred ------------------------------------------------------------------HhhCc---------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcC
Q 045902 660 QLLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLD 739 (1472)
Q Consensus 660 ~~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~ 739 (1472)
++.
T Consensus 246 ----------------------------------------------------------------------------~~~- 248 (500)
T COG1129 246 ----------------------------------------------------------------------------ELE- 248 (500)
T ss_pred ----------------------------------------------------------------------------chh-
Confidence 000
Q ss_pred CCCCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCcc
Q 045902 740 ERWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSK 819 (1472)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~ 819 (1472)
..|.
T Consensus 249 ~~~~---------------------------------------------------------------------------- 252 (500)
T COG1129 249 DLFP---------------------------------------------------------------------------- 252 (500)
T ss_pred hhcc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhccccc
Q 045902 820 KQSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIE 899 (1472)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1472)
. .+. . ...+..+++++++.
T Consensus 253 ---------------~-~~~---------------------~----------~~~~~~l~v~~l~~-------------- 271 (500)
T COG1129 253 ---------------E-PPE---------------------E----------GIGEPVLEVRNLSG-------------- 271 (500)
T ss_pred ---------------c-ccc---------------------c----------CCCCcEEEEecCCC--------------
Confidence 0 000 0 00011233444321
Q ss_pred cccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCC---
Q 045902 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQND--- 972 (1472)
Q Consensus 900 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~--- 972 (1472)
...++||||++++||++||-|-=|||+|-|+++|.|..+ ..+|+|.+||++... ...+.-++|||.|.
T Consensus 272 ---~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~ 346 (500)
T COG1129 272 ---GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346 (500)
T ss_pred ---CCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccC
Confidence 125789999999999999999999999999999999655 348999999998643 23445689999874
Q ss_pred CCCCCCCHHHHHHHHHHcCC------Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 045902 973 IHSPNVTIYESLLYSAWLRL------PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043 (1472)
Q Consensus 973 ~~~~~lTv~e~l~~~~~l~~------~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~i 1043 (1472)
.++..++|.||+.++...+. +.. ..+++..+.|++..-.- . ..+..||||.+|||.|||.|..+|+|
T Consensus 347 Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~---~-~~v~~LSGGNQQKVvlarwL~~~p~v 422 (500)
T COG1129 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP---E-QPIGTLSGGNQQKVVLARWLATDPKV 422 (500)
T ss_pred cCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCc---c-chhhcCCchhhhhHHHHHHHhcCCCE
Confidence 57889999999987632221 111 34556666666542211 1 12458999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1044 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1044 l~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
|+|||||.|+|.-+..+|.++|++++++|++||++|.+.. |+...||||++|.+ |+++..=+
T Consensus 423 LilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~ 484 (500)
T COG1129 423 LILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELD 484 (500)
T ss_pred EEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEec
Confidence 9999999999999999999999999999999999999975 78999999999985 67765333
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=518.20 Aligned_cols=198 Identities=19% Similarity=0.268 Sum_probs=154.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 467788876542 12469999999999999999999999999999999999876 35899998752
Q ss_pred ChhcccceeEEeccCCCCCCCCCHHHHHHHH--HHcCCCchHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHHH
Q 045902 957 KQETFARISGYCEQNDIHSPNVTIYESLLYS--AWLRLPKDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLTI 1033 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~--~~l~~~~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~i 1033 (1472)
..+||++|+.. +.+++.++.... .......+..++++++.+++.+ ..+.. +..|||||||||+|
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaL 638 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAF 638 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHH
Confidence 35899999752 445565654321 1111222455677888888753 33433 35799999999999
Q ss_pred HHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-EEcCC
Q 045902 1034 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI-YAGPL 1108 (1472)
Q Consensus 1034 A~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~-~~g~~ 1108 (1472)
|++|+.+|++|+|||||+|||+.+...+++.|++. . .|||++||++. .+...||++++|.+ |+++ +.|+.
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~~ 709 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGTF 709 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 99999999999999999999999999998888765 3 49999999976 46778999999986 6776 77754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=490.96 Aligned_cols=223 Identities=25% Similarity=0.284 Sum_probs=173.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
.+++|+|+|+.+.+|+.++|+|+||||||||||+|+|...++ +|+|...+ .-.++|++|++...+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 457999999999999999999999999999999999999988 89998853 2369999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHH-HHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF-MKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
.+.+.-+.. ...+...++........-......+.+ .....++++..+..++.++..||++.. ++.+++
T Consensus 84 ~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~---- 153 (530)
T COG0488 84 LDYVIEGFG-----ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS---- 153 (530)
T ss_pred HHHHHhhhH-----HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh----
Confidence 999976532 122222222222111100011122222 123345677777888999999999987 877776
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
||||||.||++|++|+.+|++|+|||||++||..+..++.+.|++. .| |+|++. |...-+-+.+++|+-++.|+
T Consensus 154 -LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVS-HDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 154 -LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVS-HDRYFLDNVATHILELDRGK 227 (530)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEe-CCHHHHHHHhhheEEecCCc
Confidence 9999999999999999999999999999999999999999999864 45 666654 56667778999999999998
Q ss_pred E-EEecChhHHH
Q 045902 424 I-VYQGPREYVL 434 (1472)
Q Consensus 424 i-v~~G~~~~~~ 434 (1472)
+ .|.|.++...
T Consensus 228 l~~y~Gny~~~~ 239 (530)
T COG0488 228 LTPYKGNYSSYL 239 (530)
T ss_pred eeEecCCHHHHH
Confidence 7 4778776544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=452.78 Aligned_cols=451 Identities=22% Similarity=0.314 Sum_probs=344.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC----ceEEEEcCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ----RTCAYISQHDLHHG 260 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 260 (1472)
...+++|||+.+++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ ..||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 467999999999999999999999999999999999999998 99999999998766654 46999999999999
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
++||.||+..+..-... .+ +..+. ....++.+.+.+||+--.|.+|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~------~~~~~------------------------~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GL------IDRRQ------------------------ARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-cc------cCHHH------------------------HHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999887542100 00 00000 011246688999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
||=||||||.|-++|+.+|++|+|||||+-|-+....++++.|+++++ .|+|||+.. |-..|+.+++|++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~IT-HKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFIT-HKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-ccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999987 688888765 56789999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhCcccchhhhcccCCCCcCCChhHHHHHHHhchhhhhhhhhhc
Q 045902 421 EGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELR 500 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~s~~e~~~~f~~s~~~~~l~~~~~ 500 (1472)
.|+++-.-++ . + ..+.+++++.
T Consensus 215 ~Gkvvgt~~~--~--------------~---------------------------~~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP--V--------------A---------------------------ETTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC--C--------------C---------------------------CCCHHHHHHH---------------
Confidence 9998643220 0 0 0000000000
Q ss_pred CCCCCCCCCCCCCCcCcccccHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhheeeeccCCccccccccchhh
Q 045902 501 VPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKRNSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYG 580 (1472)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~lf~~~~~~~~~~~~~~~~~g 580 (1472)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcchhhHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCCCHHHHHHH
Q 045902 581 ALFFSLVNVMFNGMAELALTIVRLPAFYKQRDFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATRFFRQ 660 (1472)
Q Consensus 581 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 660 (1472)
|+|
T Consensus 237 ------------------------------------------------------------------MvG----------- 239 (501)
T COG3845 237 ------------------------------------------------------------------MVG----------- 239 (501)
T ss_pred ------------------------------------------------------------------hcC-----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhheeeeccCCCchhhHHHHhhcHHHHHHHHHHHHhhcCC
Q 045902 661 LLAFFSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDE 740 (1472)
Q Consensus 661 ~l~~~~~~~~~~sl~r~iaa~~~~~~~a~~~~~~~~l~~~l~~Gfii~~~~ip~w~~W~~~ispl~Y~~~al~~nef~~~ 740 (1472)
.
T Consensus 240 -------------------------------------------------------------------------------~ 240 (501)
T COG3845 240 -------------------------------------------------------------------------------R 240 (501)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCCCCCCCCcccCCcchHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcccccccccCCCCccc
Q 045902 741 RWSAPNPARFLVDEPTVGKALLKARGMYTEDHMFWICIVALLGFSLFFNLCFIAALTYLDPFKETKSVMMEHNDGGKSKK 820 (1472)
Q Consensus 741 ~~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~i~~l~g~~v~f~i~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1472)
. ....
T Consensus 241 ~---v~~~------------------------------------------------------------------------ 245 (501)
T COG3845 241 E---VVLR------------------------------------------------------------------------ 245 (501)
T ss_pred c---cccc------------------------------------------------------------------------
Confidence 0 0000
Q ss_pred ccChhhhhhhcccCCCCCCCCCcccccccccccCCCCCccccccCCCCccccccceEEEEeceeeEEeccchhhcccccc
Q 045902 821 QSNSHAQQNMRAADMSPPSTAPLFEGIDMAVMNTPDNSIIGATSTRKGMVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEE 900 (1472)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1472)
. . ..+. .. .+..+.++|++..-+
T Consensus 246 ---~---------~-~~~~--------------------------~p------g~~vL~V~~L~v~~~------------ 268 (501)
T COG3845 246 ---V---------V-KPPS--------------------------TP------GEVVLEVEDLSVKDR------------ 268 (501)
T ss_pred ---c---------c-cCCC--------------------------CC------CCeEEEEeeeEeecC------------
Confidence 0 0 0000 00 023456666654321
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC----Ch-hcccceeEEeccCCC--
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK----KQ-ETFARISGYCEQNDI-- 973 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~----~~-~~~~~~~gyv~Q~~~-- 973 (1472)
.....+++|||+|++||++||.|..|-|.+.|+.+|+|..++ .+|+|.++|++. +. +..+.-++|||+|..
T Consensus 269 ~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~ 346 (501)
T COG3845 269 RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346 (501)
T ss_pred CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccC
Confidence 124689999999999999999999999999999999998753 359999999985 22 223346899999873
Q ss_pred -CCCCCCHHHHHHHHHHcC--------CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 045902 974 -HSPNVTIYESLLYSAWLR--------LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP 1041 (1472)
Q Consensus 974 -~~~~lTv~e~l~~~~~l~--------~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p 1041 (1472)
+.+.+|+.||+.+...-+ ...+ ...+++++.++...... ....+.||||++||+-+||+|..+|
T Consensus 347 Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p 422 (501)
T COG3845 347 GLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRP 422 (501)
T ss_pred ccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCC
Confidence 468999999997654321 1111 34556666665542111 1124689999999999999999999
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1042 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1042 ~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
++|+..+||.|||..+.+.|.+.|.+.++.|++|++++-+.+ ++++.+||+.+|.+ |+++...+..+
T Consensus 423 ~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 423 DLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred CEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 999999999999999999999999999999999999999987 79999999999985 78887776643
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=370.84 Aligned_cols=203 Identities=28% Similarity=0.417 Sum_probs=173.9
Q ss_pred cccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC----hhcccceeEEeccCCCCC
Q 045902 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK----QETFARISGYCEQNDIHS 975 (1472)
Q Consensus 900 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~----~~~~~~~~gyv~Q~~~~~ 975 (1472)
++...+|+|||++|++||+++|+|||||||||||+||.++.+ +.+|+|.++|.+.. -...|+.+|+|+|+..+|
T Consensus 12 fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 12 FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred eCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 456789999999999999999999999999999999999877 45899999997542 235678899999999999
Q ss_pred CCCCHHHHHHHHHH--cCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 976 PNVTIYESLLYSAW--LRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~--l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
|++||.||+..+-. .+.++++..+.++++|+..++.|+....| ..|||||||||+|||||+.+|+++++|||||+|
T Consensus 90 PHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP--~qLSGGQqQRVAIARALaM~P~vmLFDEPTSAL 167 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP--AQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167 (240)
T ss_pred ccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc--cccCcHHHHHHHHHHHHcCCCCEEeecCCcccC
Confidence 99999999988643 23455555555666665555555544444 489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+...++.+.+++++++|.|.||+||+... .-+.+||++.|++ |+++..|++
T Consensus 168 DPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g~p 220 (240)
T COG1126 168 DPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEGPP 220 (240)
T ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEecCH
Confidence 9999999999999999999999999999874 6678999999985 788888875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=357.52 Aligned_cols=221 Identities=27% Similarity=0.421 Sum_probs=183.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC----CCCceEEEEcCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF----VPQRTCAYISQHDLHHG 260 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q~d~~~~ 260 (1472)
..++|+|||+.|++||+++|+|||||||||||++|.|+-.++ +|+|.++|+++... ..++.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 467999999999999999999999999999999999999988 99999999876432 23578999999999999
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
++||.||+..+...- ...++.+. +.....+|+.+||.+.+|.+.
T Consensus 91 HlTvleNv~lap~~v---------~~~~k~eA------------------------~~~A~~lL~~VGL~~ka~~yP--- 134 (240)
T COG1126 91 HLTVLENVTLAPVKV---------KKLSKAEA------------------------REKALELLEKVGLADKADAYP--- 134 (240)
T ss_pred cchHHHHHHhhhHHH---------cCCCHHHH------------------------HHHHHHHHHHcCchhhhhhCc---
Confidence 999999998864311 01111111 011345789999999998655
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
..|||||||||+|||||+-+|+++++|||||+|||....++.+.++++++ .|.|+++.+|. ..-..+.+|||+.|+
T Consensus 135 --~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~VadrviFmd 210 (240)
T COG1126 135 --AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRVIFMD 210 (240)
T ss_pred --cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheEEEee
Confidence 45999999999999999999999999999999999999999999999998 58999998765 457778999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHH
Q 045902 421 EGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQE 456 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~e 456 (1472)
+|+++.+|+++++ |..|.+.-..+|+..
T Consensus 211 ~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 211 QGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred CCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999998876 345655556666654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=384.14 Aligned_cols=201 Identities=18% Similarity=0.234 Sum_probs=151.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+.+.++ ++..++++++|-|.+++.+|+|||||+|||||||++.|... +..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYS------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCC------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc-
Confidence 466777766543 22368999999999999999999999999999999999877 357877654332
Q ss_pred ChhcccceeEEeccCC--CCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH
Q 045902 957 KQETFARISGYCEQND--IHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA 1034 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA 1034 (1472)
.+++..|.. .+.-+.++.|++.-.. -+....+.+..++..+||.+-.+.. ..+.||+|||+||..|
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~~-~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPKF-PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLFA 521 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHhc-cccchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHHH
Confidence 223334432 2233556667664221 1112234555667777776433322 2468999999999999
Q ss_pred HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1035 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1035 ~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+.++..|.+|+|||||+|||..+...+.+.|.+. ..+||+++||... +-+.++++.+..+++...+.|..
T Consensus 522 ~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 522 RLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999999998876 4689999999764 77789999999998889999975
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=390.48 Aligned_cols=198 Identities=31% Similarity=0.471 Sum_probs=179.1
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
++.+|+||||+|++||++||+||||||||||||+|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 47899999999999999999999999999999999999874 58999999988654 456788999999999999999
Q ss_pred HHHHHHHHHHcCCCc----hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 980 IYESLLYSAWLRLPK----DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~----~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
|+|+|.|.+.++... .+.++++++.++|.+.+++. +++||+||||||+||+||+++|++|||||||+||||
T Consensus 95 ~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp 169 (293)
T COG1131 95 VRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169 (293)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCH
Confidence 999999999998754 35788999999998855444 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCC-CEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1056 RAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l~~~g-~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.++..+++.|++++++| +||++|||+++ ++...||++++|++ |++++.|+.
T Consensus 170 ~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~ 221 (293)
T COG1131 170 ESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221 (293)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999887 89999999987 67788999999985 799999975
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=365.57 Aligned_cols=225 Identities=27% Similarity=0.357 Sum_probs=194.3
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDL 257 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 257 (1472)
...++|+|||+.|++||+.+|+|+||||||||++++.++-.|+ +|+|.++|+++..... ++.+|+|+||..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 4567999999999999999999999999999999999999998 9999999998877643 478999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
++...||.||+.|..+..+.. +.+. +..+.++++..||++.+|.+.
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------k~ei------------------------~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------KAEI------------------------KQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------HHHH------------------------HHHHHHHHHHcCChhhhccCc
Confidence 999999999999988766531 1111 113567899999999988665
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
. .|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++.+..|.|+++..|+. +-+-+.||||.
T Consensus 140 ~-----qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVa 213 (339)
T COG1135 140 A-----QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVA 213 (339)
T ss_pred h-----hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhhe
Confidence 5 59999999999999999999999999999999999999999999999999999999988774 47778999999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhhC
Q 045902 418 LLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTS 459 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev~s 459 (1472)
+|++|+++++|+..++ |..|.+.-+-.|+.+...
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999999887 345666656666665543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=368.63 Aligned_cols=210 Identities=29% Similarity=0.446 Sum_probs=182.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+..+|+++.+ +++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++.
T Consensus 3 L~~~~ls~~y-------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~ 67 (258)
T COG1120 3 LEVENLSFGY-------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIA 67 (258)
T ss_pred eEEEEEEEEE-------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchh
Confidence 4566666654 46789999999999999999999999999999999999877 45899999999864
Q ss_pred ---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-----CCch---HHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 958 ---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-----LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-----~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
.+.+++.++|+||.....+.+||+|.+.++..-. ...+ +.++++++.+++.+++++.+ ..||||
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGG 142 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGG 142 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChh
Confidence 3567889999999998889999999998764321 1111 35788899999999999875 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
||||+.|||||+++|+||+||||||.||...+.+++++++++++ +|+|||+++||++. ...+||++++|++ |+++..
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~ 220 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQ 220 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEee
Confidence 99999999999999999999999999999999999999999984 59999999999985 7789999999985 789999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|++.
T Consensus 221 G~p~ 224 (258)
T COG1120 221 GTPE 224 (258)
T ss_pred cCcc
Confidence 9864
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=363.71 Aligned_cols=211 Identities=27% Similarity=0.439 Sum_probs=181.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.++++|+++.++ +.++|+|||++|++|++++|+||||||||||+|+|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 467888877652 2269999999999999999999999999999999999877 4589999999986
Q ss_pred ChhcccceeEEeccCCCC--CCCCCHHHHHHHHHHcC-----CC---chHHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 957 KQETFARISGYCEQNDIH--SPNVTIYESLLYSAWLR-----LP---KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~--~~~lTv~e~l~~~~~l~-----~~---~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
....-+..+|||||...+ ...+||+|.+..+...+ .+ ..+.++++++.+|+.+++|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 554445689999996532 24589999998763322 11 12678999999999999999876 69999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|+|||.|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+++.|. +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999998 4889999999996 4788999
Q ss_pred CCCc
Q 045902 1107 PLGR 1110 (1472)
Q Consensus 1107 ~~~~ 1110 (1472)
+..+
T Consensus 221 ~~~~ 224 (254)
T COG1121 221 PPEE 224 (254)
T ss_pred Chhh
Confidence 8754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=354.68 Aligned_cols=230 Identities=25% Similarity=0.372 Sum_probs=188.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.+++++.. ++++.+++|||++|++||+++||||||+||||||++|.|+.++ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~-------------fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKS-------------FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeee-------------cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 4666666543 3568899999999999999999999999999999999999884 599999999986
Q ss_pred Ch------hcccceeEEeccCCCCCCCCCHHHHHHHHHHc--CCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 957 KQ------ETFARISGYCEQNDIHSPNVTIYESLLYSAWL--RLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ~~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l--~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.+ ...++++|+++|...+|..+||+||+.|..+- ++|++...+-++..|++.++.... ....+..|||||+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~-~~~~PsELSGGM~ 151 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA-ADLYPSELSGGMR 151 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh-hhhCchhhcchHH
Confidence 43 23567899999999999999999999986442 355544444455555555444331 1112468999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||++||||++.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..+|++++|.+ |+|+..|+
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt 229 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGT 229 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999877 999999999987 58999999999986 79999999
Q ss_pred CCc----chhHHHHHHHhCCC
Q 045902 1108 LGR----QSHKLVEYFEAVPG 1124 (1472)
Q Consensus 1108 ~~~----~~~~~~~~f~~~~~ 1124 (1472)
.++ +...+.+||....+
T Consensus 230 ~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 230 PEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred HHHHHhCCCHHHHHHhcCCCC
Confidence 753 23457788876543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=402.35 Aligned_cols=212 Identities=22% Similarity=0.378 Sum_probs=180.8
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|++..++ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 4677888876542 123579999999999999999999999999999999999877 458999999988
Q ss_pred CCh--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc-h---HHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 956 KKQ--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK-D---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 956 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++... + +.++++++.++|.+..++.+ +.|||||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQ 1068 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQR 1068 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 643 234567999999999999999999999987765322 1 34677888888887777654 479999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++...+||+++|++ |+++..|+.
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~ 1144 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTP 1144 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999999999999999999995 5999999999976 46678999999986 788888875
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=362.88 Aligned_cols=199 Identities=26% Similarity=0.397 Sum_probs=170.4
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHS 975 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~ 975 (1472)
...+|+|||++|++||++||+|+||||||||++++.++.. +.+|+|.++|.++.. ...|+.+|+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 3579999999999999999999999999999999999877 459999999976532 34678899999999999
Q ss_pred CCCCHHHHHHHHHHcCC-CchH---HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 976 PNVTIYESLLYSAWLRL-PKDM---FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~-~~~~---~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
...||.||+.|...+.. ++++ ++.++++.+||.+.++. .| .+|||||||||+|||||+.+|+||++|||||
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~---yP--~qLSGGQKQRVaIARALa~~P~iLL~DEaTS 170 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR---YP--AQLSGGQKQRVAIARALANNPKILLCDEATS 170 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc---Cc--hhcCcchhhHHHHHHHHhcCCCEEEecCccc
Confidence 99999999999887754 3333 44555555555544443 33 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1052 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||.+.+.|+++|+++.++ |.||+++||+++. +-+.|||+.+|++ |+++..|+..
T Consensus 171 ALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred cCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEEEeccHH
Confidence 99999999999999999765 9999999999763 6678999999985 8999999864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=376.90 Aligned_cols=212 Identities=31% Similarity=0.467 Sum_probs=184.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC--CCCceEEEEcCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF--VPQRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 262 (1472)
.+.+|+|||+.+++|++++++||||||||||||+|+|++.|+ +|+|.++|++.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 468999999999999999999999999999999999999997 99999999988653 2356899999999999999
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+|||.|.+++.+..... ....++.+++.+||++.+++.+
T Consensus 94 T~~e~l~~~~~l~~~~~~~----------------------------------~~~~~~~~l~~~~L~~~~~~~~----- 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKEE----------------------------------AEERIEELLELFGLEDKANKKV----- 134 (293)
T ss_pred cHHHHHHHHHHHhCCChhH----------------------------------HHHHHHHHHHHcCCchhhCcch-----
Confidence 9999999998887643100 0012567899999998555555
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
++||+||||||+||.||+++|+++||||||+|||+.++.++.+.|+++++..++||+++.|++ .++.++||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCC
Confidence 459999999999999999999999999999999999999999999999986668999988765 5888889999999999
Q ss_pred eEEEecChhHHHHHHHh
Q 045902 423 EIVYQGPREYVLDFFES 439 (1472)
Q Consensus 423 ~iv~~G~~~~~~~~F~~ 439 (1472)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999988766543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=341.28 Aligned_cols=198 Identities=28% Similarity=0.393 Sum_probs=179.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC--hhcccceeEEeccCCCCCCCCCH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK--QETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~--~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
.++++||||+++.||++||+|||||||||+|++|++.+.| .+|.|.+||.+.. +...++.+|.++.+..++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 4599999999999999999999999999999999999874 5999999999853 35678899999988899999999
Q ss_pred HHHHHHHHHcCCC----chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 981 YESLLYSAWLRLP----KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~~~----~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
+|||.|.+.+..- .+.+.+++.+.|+|..+.|+.++ ++|.||||||+|||||+++|++++|||||||||..
T Consensus 93 rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~ 167 (245)
T COG4555 93 RENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIR 167 (245)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHH
Confidence 9999998887532 23678899999999999999876 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+.+.+.+.++++.++|++||++||.++ ++...||++++|++ |++++.|...
T Consensus 168 ~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 168 TRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999999999999975 67779999999986 7899999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=363.58 Aligned_cols=210 Identities=30% Similarity=0.435 Sum_probs=181.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC---ceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ---RTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 261 (1472)
++.||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ +.++||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 357999999999999999999999999999999999999997 89999999999887653 789999999988889
Q ss_pred CCHHHHHHHhhhc-cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 262 MTVRETLDFSGRC-LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
+||+|-+.++..- ++.. ...+++ |. ..++..|+.+|+.+.++..+..
T Consensus 91 ~tV~d~V~~GR~p~~~~~------~~~~~~----------D~---------------~~v~~aL~~~~~~~la~r~~~~- 138 (258)
T COG1120 91 LTVYELVLLGRYPHLGLF------GRPSKE----------DE---------------EIVEEALELLGLEHLADRPVDE- 138 (258)
T ss_pred cEEeehHhhcCCcccccc------cCCCHh----------HH---------------HHHHHHHHHhCcHHHhcCcccc-
Confidence 9999999886431 1100 000111 11 1246679999999999988865
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||.|||||+.+|++|+||||||+||...+.++++.++++++..|.|+|+++|++ ....+++|++++|+
T Consensus 139 ----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk 213 (258)
T COG1120 139 ----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLK 213 (258)
T ss_pred ----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999988899999988765 47789999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|+++.+|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998775
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=346.26 Aligned_cols=208 Identities=27% Similarity=0.398 Sum_probs=184.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 261 (1472)
.+.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+..+ ++.+|||-|+--+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 467999999999999999999999999999999999999998 9999999999988654 6899999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc--cccccccC
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI--CADIMVGN 339 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~--~~dt~vg~ 339 (1472)
+||.||+.+--.+.+... .+ .+..++++|+.+||+. .+|
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------~~------------------------i~~r~~ELl~lvgL~p~~~~~----- 130 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------ER------------------------IKKRADELLDLVGLDPSEYAD----- 130 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------HH------------------------HHHHHHHHHHHhCCCHHHHhh-----
Confidence 999999988766554321 10 1123577899999974 455
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.++..|||||+|||.+||||+.+|++++||||+++||+.++.++.+.++++.+..++|+|+..| ...|.+.++|||++|
T Consensus 131 RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-DidEA~kLadri~vm 209 (309)
T COG1125 131 RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-DIDEALKLADRIAVM 209 (309)
T ss_pred cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-CHHHHHhhhceEEEe
Confidence 4556799999999999999999999999999999999999999999999999999999998765 577999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 045902 420 SEGEIVYQGPREYVLD 435 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~~ 435 (1472)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=373.82 Aligned_cols=216 Identities=29% Similarity=0.418 Sum_probs=191.5
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC-ceEEEEcCCCCCCCCCCHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-RTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+|+|+|+.|++||+++|+|||||||||||++|||+.+++ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998875 88999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.|+.+.++... .+++ ..++.+.+.|+|++..|.+.. +||
T Consensus 95 Niaf~Lk~~~~~k--------------------~ei~--------------~rV~eva~~L~l~~lL~r~P~-----~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK--------------------AEID--------------KRVKEVAKLLGLEHLLNRKPL-----QLS 135 (338)
T ss_pred HhhhhhhhCCCch--------------------HHHH--------------HHHHHHHHHcCChhHHhcCcc-----cCC
Confidence 9999988765321 1111 135678899999999987654 599
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
|||||||++||||+.+|++++||||+|.||...+.++...|+++.+..+.|+|..+|+ ..|...++|||.+|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD-q~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD-QVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC-HHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999999988888888887655 568899999999999999999
Q ss_pred ecChhHHHHHHHhcCCCCCCCCChHHHH
Q 045902 427 QGPREYVLDFFESVGFRCPERKGAADFL 454 (1472)
Q Consensus 427 ~G~~~~~~~~F~~~G~~cp~~~~~adfl 454 (1472)
.|++.++ |..|...-+|.|+
T Consensus 215 ~g~p~el--------y~~P~n~fVA~Fi 234 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFI 234 (338)
T ss_pred cCChHHH--------hhCccchhhhhhc
Confidence 9999998 4456666667765
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=351.93 Aligned_cols=188 Identities=26% Similarity=0.394 Sum_probs=165.8
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.. .....+|||+|++.++|-+||+
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 3679999999999999999999999999999999999987 45899999999873 2345689999999999999999
Q ss_pred HHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 982 ESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 982 e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
||+.++...+. +.+ +.+++.++.+||.++.|.. +..|||||||||+|||||+.+|+||+||||+++||+.+
T Consensus 91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT 165 (248)
T COG1116 91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165 (248)
T ss_pred hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH
Confidence 99999887753 222 4567788888888887765 35899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1058 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+..+++.|.++.+ .++|||++|||.+ |...+.|||++|.++
T Consensus 166 R~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 166 REELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999864 4899999999987 677789999999864
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=344.56 Aligned_cols=201 Identities=28% Similarity=0.391 Sum_probs=170.3
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIH 974 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~ 974 (1472)
+++++|+|||+.|++||++||+|||||||||||++|.|... +.+|+|.++|.++.. ..+++.+||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 46789999999999999999999999999999999999766 458999999976421 3467889999999999
Q ss_pred CCCCCHHHHHHHHHHc---------CCCchHH---HHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 045902 975 SPNVTIYESLLYSAWL---------RLPKDMF---VEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS 1042 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l---------~~~~~~~---~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~ 1042 (1472)
.+.++|.+|++.+..- .....+. .-++++.+|+.+.+-+.. +.|||||+|||+|||||+.+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccCCcchhHHHHHHHHHhcCCC
Confidence 9999999999865322 2222222 335566666666655554 4799999999999999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1043 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1043 il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
|++.|||+++|||.+++.||+.|++++++ |.|||++.||.+. ..++|||++-|++ |+++|+||..+
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~~e 234 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPASE 234 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCChhh
Confidence 99999999999999999999999999754 9999999999875 6789999999985 89999999864
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=342.66 Aligned_cols=216 Identities=25% Similarity=0.362 Sum_probs=182.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLH 258 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 258 (1472)
++++|+|||+.|++|||++|+|||||||||||++|+|..+++ +|+|.+||.++..... ++.+||++|+..+
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 457999999999999999999999999999999999999988 9999999998876542 3689999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
.+.+||.||+..+..-+. +..+ .-.+..+.++.... -..|+.+|+.+.+-+..+
T Consensus 93 v~r~sv~~NVl~grl~~~--s~~~---------slfglfsk~dk~~A---------------l~aLervgi~~~A~qra~ 146 (258)
T COG3638 93 VPRLSVLENVLLGRLGYT--STWR---------SLFGLFSKEDKAQA---------------LDALERVGILDKAYQRAS 146 (258)
T ss_pred ccccHHHHHHHhhhcccc--hHHH---------HHhCCCCHHHHHHH---------------HHHHHHcCcHHHHHHHhc
Confidence 999999999987643221 1111 11222222222221 235889999998888877
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||+|||+|||||+.+|++++-|||+++||+.++.++++.|+++.+..|.|+|+.+||- .-..++||||+-
T Consensus 147 ~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riig 220 (258)
T COG3638 147 T-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIG 220 (258)
T ss_pred c-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheE
Confidence 6 9999999999999999999999999999999999999999999999999999999999875 466789999999
Q ss_pred ecCCeEEEecChhHHHH
Q 045902 419 LSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~~ 435 (1472)
|++|+|+|.||++++.+
T Consensus 221 l~~G~ivfDg~~~el~~ 237 (258)
T COG3638 221 LKAGRIVFDGPASELTD 237 (258)
T ss_pred ecCCcEEEeCChhhhhH
Confidence 99999999999988754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=348.64 Aligned_cols=189 Identities=29% Similarity=0.444 Sum_probs=162.9
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hc-ccceeEEeccCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ET-FARISGYCEQNDIHS 975 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~-~~~~~gyv~Q~~~~~ 975 (1472)
..+|++||++|++||++||||||||||||||++|.|...+ .+|.|.++|.+... .. +++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998774 58999999976532 22 345799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCc----hHHHHHHHHHcccccccc-cccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCC
Q 045902 976 PNVTIYESLLYSAWLRLPK----DMFVEEVMELVEMKALRN-SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~~----~~~~~~v~~~l~l~~~~~-~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPT 1050 (1472)
|++||.||+.....+.... ....+++++.+|+.+..+ .. +..|||||||||+|||||+.+|+||+.||||
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilADEPT 170 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILADEPT 170 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEeeCcc
Confidence 9999999999766554322 245677788888875544 32 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCc
Q 045902 1051 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg 1100 (1472)
.+||+.++..|++++++++++ |+|||++|||| ++...|||++.|.+|+
T Consensus 171 gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999866 99999999996 4788999999999753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=345.66 Aligned_cols=196 Identities=29% Similarity=0.446 Sum_probs=170.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDL 257 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 257 (1472)
..++|+|+|+.|++||+++|+|||||||||||++|.|...|+ +|.|.++|.++..... ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 368999999999999999999999999999999999999997 9999999999887643 357999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc-cc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD-IM 336 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d-t~ 336 (1472)
++|++||+||+.......+.... .. ....+.+++.+||++..+ ..
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~--------~~--------------------------~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG--------RR--------------------------KRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh--------HH--------------------------HHHHHHHHHhcCChhhhccCC
Confidence 99999999999987655443210 00 012356788999997665 55
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+. .|||||||||+|||||+.+|++++.||||.+||+.++..|++.|+++++..|+|+|+++|.| ++...+||+
T Consensus 140 p~-----eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~ 212 (226)
T COG1136 140 PS-----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRV 212 (226)
T ss_pred ch-----hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEE
Confidence 54 49999999999999999999999999999999999999999999999988899999998865 688899999
Q ss_pred EEecCCeE
Q 045902 417 ILLSEGEI 424 (1472)
Q Consensus 417 ilL~~G~i 424 (1472)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999994
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=370.02 Aligned_cols=223 Identities=28% Similarity=0.417 Sum_probs=195.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC-ceEEEEcCCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-RTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lT 263 (1472)
...+|+|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+. |.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 457999999999999999999999999999999999999998 99999999999998774 78999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.|+.+.+.... ++++ +..+++.++.++|++.++.++.
T Consensus 94 V~~NVafGLk~~~~~~-------------------~~~i--------------~~rv~e~L~lV~L~~~~~R~p~----- 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK-------------------KAEI--------------KARVEEALELVGLEGFADRKPH----- 135 (352)
T ss_pred HHHHhhhhhhhcCCCC-------------------HHHH--------------HHHHHHHHHHcCchhhhhhChh-----
Confidence 9999999977332111 0111 1135678899999998876654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
.|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.+..|.|.|..+|+ ..|...++|||.+|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD-qeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD-QEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC-HHHHhhhccceEEccCCc
Confidence 5999999999999999999999999999999999999999999999999899998887755 568899999999999999
Q ss_pred EEEecChhHHHHHHHhcCCCCCCCCChHHHHHHh
Q 045902 424 IVYQGPREYVLDFFESVGFRCPERKGAADFLQEV 457 (1472)
Q Consensus 424 iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev 457 (1472)
|...|+++++ |..|...-+|||+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5678888888888654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=344.15 Aligned_cols=200 Identities=25% Similarity=0.356 Sum_probs=174.7
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPN 977 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~ 977 (1472)
.++.+++|+|++|++||+++++|||||||||+|++|.++.+ +.+|+|.+||.++.. ...||.+|||-|.-.+||+
T Consensus 12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 46789999999999999999999999999999999999987 459999999998754 4678899999999999999
Q ss_pred CCHHHHHHHHHHcCC-Cc---hHHHHHHHHHccccc--ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 978 VTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKA--LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~--~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
+||.||+.+--.+.. ++ +++++|++++++|.. +.++. ++.|||||+|||.+||||+++|+||+||||++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~ilLMDEPFg 164 (309)
T COG1125 90 LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPILLMDEPFG 164 (309)
T ss_pred ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeEeecCCcc
Confidence 999999987655542 22 256778888888864 45543 45899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1052 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||-++..+++.++++.++ |+|||++|||.+ +.+.+.||+.+|++ |+++..+++.
T Consensus 165 ALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q~~~P~ 221 (309)
T COG1125 165 ALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQYDTPD 221 (309)
T ss_pred ccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEEeCCHH
Confidence 99999999999999999765 999999999987 78899999999985 7888777653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=352.78 Aligned_cols=200 Identities=30% Similarity=0.483 Sum_probs=178.3
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc---cCCh-hcccceeEEeccCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY---PKKQ-ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~---~~~~-~~~~~~~gyv~Q~~~~~~ 976 (1472)
+...+++|||++|+.||++||+|||||||||||++|+|+.+ +..|.|.+||. +..+ ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 45679999999999999999999999999999999999987 45899999999 5443 344678999999999999
Q ss_pred CCCHHHHHHHHHHcCC--C-c---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCC
Q 045902 977 NVTIYESLLYSAWLRL--P-K---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~--~-~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPT 1050 (1472)
+|||.||+.|+...+. + + +.+++++++++.|.++.+.. +..|||||||||++||||+..|++|+||||.
T Consensus 91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 9999999999987651 1 1 25688899999999988875 3589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1051 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
++||+.-++.+.+.|+++.+. |.|+|++|||+. +.++.+|||++|++ |++...||..
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999999866 999999999986 79999999999986 7899889864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=350.18 Aligned_cols=223 Identities=28% Similarity=0.447 Sum_probs=187.1
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCe---eCCCCCC-CceEEEEcCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH---ELTEFVP-QRTCAYISQHDLHHG 260 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q~d~~~~ 260 (1472)
...+++|||+.|+.||+++++|||||||||||++|+|+..|+ +|+|.+||. +.+.... .|.||||+|+-.+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 356899999999999999999999999999999999999998 999999999 6555333 378999999999999
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.|||.||+.|+.+++... + +..++ +..++++|+.+.|++.+|.+
T Consensus 91 HmtVa~NIAFGl~~~~~~-----p-------------~~~~~--------------r~rv~elL~lvqL~~la~ry---- 134 (345)
T COG1118 91 HMTVADNIAFGLKVRKER-----P-------------SEAEI--------------RARVEELLRLVQLEGLADRY---- 134 (345)
T ss_pred cchHHhhhhhcccccccC-----C-------------ChhhH--------------HHHHHHHHHHhcccchhhcC----
Confidence 999999999998765210 0 00011 11356678899999888755
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
+..|||||||||++||||+..|++|+||||+++||..-+.++-+.|+++.+..+.|++++.| ...|+++++|+|++|+
T Consensus 135 -P~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH-D~eea~~ladrvvvl~ 212 (345)
T COG1118 135 -PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH-DQEEALELADRVVVLN 212 (345)
T ss_pred -chhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC-CHHHHHhhcceEEEec
Confidence 45699999999999999999999999999999999999999999999998877888888765 4569999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHH
Q 045902 421 EGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQE 456 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~e 456 (1472)
+|+|...||++++- ..|...-.+.|+-+
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 99999999999983 34555555555543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=347.04 Aligned_cols=206 Identities=27% Similarity=0.421 Sum_probs=173.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCC---CCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHD---LHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d---~~~~~lT 263 (1472)
++|+|||+.+++|++++|+||||||||||+|+|.|++.|. +|+|.++|.+.....++..+|||||.. +-| .+|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~f-P~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSF-PIT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCC-CcC
Confidence 4999999999999999999999999999999999999998 999999999888776677899999964 334 479
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+|.+..+..-+. ......++.++ ..++..|+.+|+.+.+|..+|.
T Consensus 94 V~d~V~~g~~~~~-----g~~~~~~~~d~-------------------------~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGKK-----GWFRRLNKKDK-------------------------EKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCcccc-----cccccccHHHH-------------------------HHHHHHHHHcCchhhhCCcccc----
Confidence 9999987632111 01111111111 1357789999999999999987
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.+. |+||+++.| ....+.++||+|+.|+ ++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtH-DL~~v~~~~D~vi~Ln-~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTH-DLGLVMAYFDRVICLN-RH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC-CcHHhHhhCCEEEEEc-Ce
Confidence 9999999999999999999999999999999999999999999999986 999988765 4568889999999995 57
Q ss_pred EEEecChhHHH
Q 045902 424 IVYQGPREYVL 434 (1472)
Q Consensus 424 iv~~G~~~~~~ 434 (1472)
+++.|+++++.
T Consensus 216 ~~~~G~~~~~~ 226 (254)
T COG1121 216 LIASGPPEEVL 226 (254)
T ss_pred eEeccChhhcc
Confidence 88999998874
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=336.01 Aligned_cols=209 Identities=25% Similarity=0.366 Sum_probs=178.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLH 258 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 258 (1472)
.+.||+|||+.|++||+++|+|||||||||||++|.|++.|+ +|+|.++|+++..... ++++|+++|+-.+
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 457999999999999999999999999999999999999998 9999999999876643 3679999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccc-ccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC-ADIMV 337 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~v 337 (1472)
|..|||+||+.|..+-... .|++.+++. +..-|+..||... +|
T Consensus 97 FssltV~eNVafplre~~~-------------------lp~~~i~~l--------------v~~KL~~VGL~~~~~~--- 140 (263)
T COG1127 97 FSSLTVFENVAFPLREHTK-------------------LPESLIREL--------------VLMKLELVGLRGAAAD--- 140 (263)
T ss_pred ccccchhHhhheehHhhcc-------------------CCHHHHHHH--------------HHHHHHhcCCChhhhh---
Confidence 9999999999996542211 122222211 1223567788754 44
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
.++..||||+|||+++|||++.+|+++|+||||+||||.++..+.++++++.+..+.|+++..|+ .++++..+|+++
T Consensus 141 --~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD-l~s~~~i~Drv~ 217 (263)
T COG1127 141 --LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRVA 217 (263)
T ss_pred --hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC-hHHHHhhhceEE
Confidence 56677999999999999999999999999999999999999999999999999999999987765 568999999999
Q ss_pred EecCCeEEEecChhHHHH
Q 045902 418 LLSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~~ 435 (1472)
+|.+|+|+.+|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999998854
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=366.65 Aligned_cols=210 Identities=28% Similarity=0.395 Sum_probs=180.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++..+ +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~-------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRY-------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEE-------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 46777776554 23579999999999999999999999999999999999877 4589999999986
Q ss_pred Ch--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHH
Q 045902 957 KQ--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR 1030 (1472)
Q Consensus 957 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqR 1030 (1472)
.. ...++.+||++|++.+++.+||+||+.|.+.++. +.. ..++++++.+++.+..++.+ ++||||||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 146 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRR 146 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHH
Confidence 43 2356789999999999999999999998666542 222 34667888888887777665 4799999999
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 222 (306)
T PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAP 222 (306)
T ss_pred HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999877999999999986 57788999999985 799999985
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=342.62 Aligned_cols=194 Identities=27% Similarity=0.382 Sum_probs=169.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
..+|+|+|+.|.+||+++|+||||||||||||+|+|+..|+ +|+|.++|.++. .|...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999998 999999999883 3567799999999999999999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.|+....+... .+. ...++..|+..||....|.. +..|
T Consensus 91 ~NV~l~l~~~~~~~----------~e~------------------------~~~a~~~L~~VgL~~~~~~~-----P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------AEA------------------------RERAKELLELVGLAGFEDKY-----PHQL 131 (248)
T ss_pred hhheehhhccccch----------HhH------------------------HHHHHHHHHHcCCcchhhcC-----cccc
Confidence 99999877654211 111 01245688999999988855 4569
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC--Ce
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE--GE 423 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~--G~ 423 (1472)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+..+.|+++++|. -+|...++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd-i~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD-VDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC-HHHHHhhhCEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999999998888999987765 5688889999999998 44
Q ss_pred E
Q 045902 424 I 424 (1472)
Q Consensus 424 i 424 (1472)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 5
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=328.50 Aligned_cols=214 Identities=26% Similarity=0.373 Sum_probs=178.1
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC---CCCeeEEEEEEc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGYIEGSISIS 952 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~ 952 (1472)
..+..+|++.++ +.+++|+|||+.|+++++|||||||||||||||++|.... ++-.++|+|.++
T Consensus 6 ~~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 346677777665 4578999999999999999999999999999999999853 334678999999
Q ss_pred CccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch----HHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 953 GYPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD----MFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 953 G~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~----~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
|+++.. ...|+.+|+|+|.+.-|| +|++||+.|+.++....+ +.+|+.++...|.+ .+|++... ..+
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s--a~~ 149 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKS--ALG 149 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCC--ccC
Confidence 987633 357889999999999999 999999999988765433 44566666655543 34444333 247
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
|||||+|||||||||+.+|+||+||||||+|||.+...|-++|.+|+ +.-|||++||.+. ......|+...+.. |++
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~L 226 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GEL 226 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEE
Confidence 99999999999999999999999999999999999999999999997 4689999999976 46778899999985 799
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+.+|+.
T Consensus 227 vE~g~T 232 (253)
T COG1117 227 VEFGPT 232 (253)
T ss_pred EEEcCH
Confidence 999985
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=380.54 Aligned_cols=210 Identities=24% Similarity=0.436 Sum_probs=180.4
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHG 260 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 260 (1472)
.+.+||+|+|++|+|||.+||+|||||||||+.++|-.+++|+ +|+|++||+|+.++++ ++.+|+|.|+|.+|.
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 3567999999999999999999999999999999999999998 9999999999999876 488999999999996
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
-||+|||.|+.. .. .++++..+.|.+.++ |. +.++++..||.|| |
T Consensus 556 -~sI~eNI~YG~~--~~--------------------t~e~i~~AAk~ANah--------~F---I~~~p~gY~T~VG-E 600 (716)
T KOG0058|consen 556 -GSIRENIAYGLD--NA--------------------TDEEIEAAAKMANAH--------EF---ITNFPDGYNTVVG-E 600 (716)
T ss_pred -ccHHHHHhcCCC--CC--------------------CHHHHHHHHHHhChH--------HH---HHhCccccccccC-C
Confidence 499999999743 10 123344444444333 22 2468889999999 6
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
++..||||||||++|||||+.+|+||||||.||+||+.+...+.+.|.+..+ ++||++.-|. -.+.+.+|+|++++
T Consensus 601 kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHR--LSTV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 601 KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHR--LSTVRHADQIVVID 676 (716)
T ss_pred ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehh--hhHhhhccEEEEEc
Confidence 7778999999999999999999999999999999999999999999998875 4788876654 46889999999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|++++.|+++|+++
T Consensus 677 ~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLS 691 (716)
T ss_pred CCeEEecccHHHHhh
Confidence 999999999999875
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=362.68 Aligned_cols=196 Identities=30% Similarity=0.427 Sum_probs=177.7
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
+|+|||++|+.||+++|+|||||||||||++|||+.. +.+|+|.|+|.+.+. ...+|.+++|+|+..+||+|||+||
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 9999999999999999999999999999999999977 459999999998765 4456889999999999999999999
Q ss_pred HHHHHHcCCC-c---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 984 LLYSAWLRLP-K---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 984 l~~~~~l~~~-~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
+.|+.+.+.. . +.+++++.+.|++.++.|+.. .+|||||||||+|||||+++|++++||||.|+||+..+.
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~ 170 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRV 170 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHH
Confidence 9999888642 2 267889999999999988763 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1060 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1060 ~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
.+...|+++.++ |.|+|.+|||.. |...++||+++|. +|++...|++.
T Consensus 171 ~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~p~ 219 (338)
T COG3839 171 LMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGTPL 219 (338)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCChH
Confidence 999999998765 899999999964 7888999999998 58999988764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=365.44 Aligned_cols=201 Identities=27% Similarity=0.392 Sum_probs=178.9
Q ss_pred cccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCC
Q 045902 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 900 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~l 978 (1472)
+++..+|+|||++|++||+++|+|||||||||||++|||..+ +.+|+|.++|.++.. ...+|.+|+|+|+..+||+|
T Consensus 15 yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred cCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 346789999999999999999999999999999999999987 458999999999765 34578899999999999999
Q ss_pred CHHHHHHHHHHcCC-Cc-h---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 979 TIYESLLYSAWLRL-PK-D---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~-~~-~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
||+||+.|+.+++. .. + ++++++++.++|.++.++. +..|||||||||+|||||+.+|++|+||||.|+|
T Consensus 93 tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaL 167 (352)
T COG3842 93 TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSAL 167 (352)
T ss_pred cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHhhcCcchhhhcCcccch
Confidence 99999999988543 22 2 4678888888888887765 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1054 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|..-+..+...|+++.++ |.|.|++|||.. +.+.+.||+++|++ |++...|++.
T Consensus 168 D~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP~ 222 (352)
T COG3842 168 DAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTPE 222 (352)
T ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCHH
Confidence 999999999999999755 999999999976 78889999999985 7999989864
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=321.17 Aligned_cols=194 Identities=27% Similarity=0.405 Sum_probs=163.0
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+||||.|++||++-|+||||||||||||+|.+... +..|+|.++|+++.. .-.+|.+|+|+||..+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999999999999999999999999766 458999999998642 235789999999999999
Q ss_pred CCCHHHHHHHHHHcCCC-chH---HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRLP-KDM---FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~-~~~---~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
+.||+||+.|....... +++ ++.++++.+||.+-.+. .| ..|||||||||+||||++.+|++|+.||||-+
T Consensus 93 ~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~---lP--~~LSGGEQQRvaIARAiV~~P~vLlADEPTGN 167 (223)
T COG2884 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA---LP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167 (223)
T ss_pred cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc---Cc--cccCchHHHHHHHHHHHccCCCeEeecCCCCC
Confidence 99999999998776543 333 44555555555554443 33 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhh-CeEEEEecCcEEEEEc
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~-D~v~~l~~gg~v~~~g 1106 (1472)
|||..+..|++++.++.+.|.|||+.||+. ++.+.+ -+++.|.+ |+++.+.
T Consensus 168 LDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~-Grl~~d~ 219 (223)
T COG2884 168 LDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALED-GRLVRDE 219 (223)
T ss_pred CChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeC-CEEEecc
Confidence 999999999999999999999999999984 466655 56777765 7877654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=325.63 Aligned_cols=207 Identities=30% Similarity=0.354 Sum_probs=182.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 262 (1472)
..++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+....+ .++.+|.++.+.-++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 345899999999999999999999999999999999999998 999999999876543 357899999888999999
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.|.+++.+. ++.+. +..++.+.+.|+|..|.|+.+|+
T Consensus 91 T~rEnl~~Fa~L~~l----------~~~~~------------------------kari~~l~k~l~l~~~~~rRv~~--- 133 (245)
T COG4555 91 TARENLKYFARLNGL----------SRKEI------------------------KARIAELSKRLQLLEYLDRRVGE--- 133 (245)
T ss_pred hHHHHHHHHHHHhhh----------hhhHH------------------------HHHHHHHHHHhChHHHHHHHHhh---
Confidence 999999998876543 22211 11356788999999999999986
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
+|-|+||||+|||||+.+|+++++||||||||..+...+.+.++++.. .|+++|.+.| ..+|+..+||+|++|++|
T Consensus 134 --~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH-~m~EvealCDrvivlh~G 209 (245)
T COG4555 134 --FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSH-IMQEVEALCDRVIVLHKG 209 (245)
T ss_pred --hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecc-cHHHHHHhhheEEEEecC
Confidence 999999999999999999999999999999999999999999999865 6889998875 577999999999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
++|+.|+.+++..
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999987754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=361.91 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=177.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|+++....+ ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999997 8999999999876532 45799999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.|.....+.. +.+ . ...+..+++.+||++..|..++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~~~----------~--------------~~~v~e~l~~vgL~~~~~~~~~- 139 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------KDE----------I--------------KRKVTELLALVGLGDKHDSYPS- 139 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCchhhhCChh-
Confidence 9999999998865432210 000 0 0123567889999988886665
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+. +.+.++||+|++|
T Consensus 140 ----~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl 214 (343)
T TIGR02314 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999876688999887764 5778899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998873
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=324.27 Aligned_cols=223 Identities=26% Similarity=0.413 Sum_probs=178.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHDL 257 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~ 257 (1472)
.+++|+|||+.|+++++||++|||||||||||++|....+ +..+++|+|.++|+++.+.. .++.+|+|+|.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3569999999999999999999999999999999998644 45688999999999986542 3588999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
-|| +|++||+.|+.+..|... +.+. +.++...+.+++. |++-+.|
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~~ld--------------eiVe~sLk~AaLW--------dEVKDrL---------- 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--KELD--------------EIVESSLKKAALW--------DEVKDRL---------- 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--HHHH--------------HHHHHHHHHhHhH--------HHhHHHh----------
Confidence 999 999999999998877543 1111 1122222333322 1121111
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
++...+|||||+||++|||||+-+|+||+||||||+|||.++..|-+++.++.+ +-|||+..|. .....+..|+..
T Consensus 144 -~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHn-mqQAaRvSD~ta 219 (253)
T COG1117 144 -HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHN-MQQAARVSDYTA 219 (253)
T ss_pred -hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCC-HHHHHHHhHhhh
Confidence 133456999999999999999999999999999999999999999999999974 5788877654 567889999999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 045902 418 LLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFL 454 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl 454 (1472)
.+..|++|++|+.+++ |..|.++.+.||+
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999887 4557777666665
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=315.77 Aligned_cols=201 Identities=24% Similarity=0.411 Sum_probs=177.2
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHHHHH
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
.+++.|.+||+++|+||||||||||||+|+|+..|. +|+|.+||++.+...| +|-++.++|+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478899999999999999999999999999999997 9999999999987766 478999999999999999999998
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
++.. ++-+ +...++ ..++.++...||..+.+.+.+. |||||
T Consensus 94 LGl~---P~Lk------L~a~~r-------------------------~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNAEQR-------------------------EKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCC---cccc------cCHHHH-------------------------HHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 7642 1111 111111 1246678899999999887765 99999
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecC
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~ 429 (1472)
||||++||+|+.+-+||+||||+|+||+.-+.++...+.+++.+++.|+++..|||. +...++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999986 7889999999999999999999
Q ss_pred hhHHH
Q 045902 430 REYVL 434 (1472)
Q Consensus 430 ~~~~~ 434 (1472)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=389.31 Aligned_cols=207 Identities=29% Similarity=0.461 Sum_probs=178.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 263 (1472)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||+++++..+ ++.++||+|++.+|. -|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhc-Cc
Confidence 6899999999999999999999999999999999999998 9999999999988765 588999999988885 69
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.++.. +...++.++|+.+.|. .+. +..++...||.|| |++.
T Consensus 563 I~eNi~l~~p-------------------------~~~~e~i~~A~~~ag~-----~~f---I~~lP~gy~t~v~-E~G~ 608 (709)
T COG2274 563 IRENIALGNP-------------------------EATDEEIIEAAQLAGA-----HEF---IENLPMGYDTPVG-EGGA 608 (709)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHhCc-----HHH---HHhcccccccccc-cCCC
Confidence 9999987532 1122233333333332 122 3457888899999 7889
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
+||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. .++|+|+..|.+ .+.+.+|+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCc
Confidence 999999999999999999999999999999999999999999999986 468998888866 5889999999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
++.+|+++++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999976
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=360.50 Aligned_cols=211 Identities=24% Similarity=0.362 Sum_probs=180.7
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|++..+ +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 357788887654 235799999999999999999999999999999999998774 58999999998
Q ss_pred CCh--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 956 KKQ--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 956 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
... ...++.+||++|+..+++.+||.|++.+.+..+. +.. ...+++++.+++.+..++.+ ..|||||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kq 179 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKR 179 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHH
Confidence 643 2346779999999999999999999987655432 211 34567788888887777664 479999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 256 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRP 256 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999999878999999999986 57789999999985 799999986
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=360.00 Aligned_cols=197 Identities=26% Similarity=0.358 Sum_probs=170.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---h---cccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---E---TFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~---~~~~~~gyv~Q~~~~~~ 976 (1472)
..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. . ..++.+||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 469999999999999999999999999999999999877 458999999987643 1 23567999999999999
Q ss_pred CCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
..||+||+.+..... .+.. +.+.++++.+++.+..|... ..|||||||||+|||||+.+|++|+|||||||
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~ 170 (343)
T TIGR02314 96 SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSA 170 (343)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 999999999876543 2222 34667788888877766543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++..|+.
T Consensus 171 LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv~~g~~ 225 (343)
T TIGR02314 171 LDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQGTV 225 (343)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999865 999999999976 46788999999985 799999985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=363.71 Aligned_cols=206 Identities=24% Similarity=0.341 Sum_probs=178.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+++ +|+|.++|.++....+ ++.++||+|++.++|++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999987 9999999999876544 3689999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+. ...++.+++.+||++..|..+. .
T Consensus 94 ~eNi~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~-----~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------KAEI------------------------EERVAEAARILELEPLLDRKPR-----E 134 (356)
T ss_pred HHHHHhHHhhcCCC----------HHHH------------------------HHHHHHHHHHcCChhHhhCChh-----h
Confidence 99999976532210 0000 0124568899999988887665 4
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||++||+.++.++.+.|+++.+..+.|+|++.|++ .++.+++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999876688998888765 578999999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=345.78 Aligned_cols=197 Identities=25% Similarity=0.394 Sum_probs=168.0
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4699999999999999999999999999999999998763 58999999987532 234567999999999999
Q ss_pred CCCHHHHHHHHHHcC--CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 977 NVTIYESLLYSAWLR--LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~--~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
.+||.||+.+..... .+.+ ..++++++.+++.+..++.+ ..|||||||||+||+||+.+|++|+|||||+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt~ 165 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPTA 165 (235)
T ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 999999998864422 1221 34567788888876655543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1052 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 166 GLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 99999999999999999874 899999999976 46778999999985 788888875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=358.48 Aligned_cols=198 Identities=28% Similarity=0.411 Sum_probs=172.7
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999877 458999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 980 IYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 980 v~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
|+|++.+.+.++. +. ...++++++.+++.+..++.+ ..|||||||||+||+||+++|++|+|||||+|||+
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 9999998766542 21 235678889999887776654 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1056 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999877999999999976 57788999999985 789998875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=361.15 Aligned_cols=206 Identities=27% Similarity=0.418 Sum_probs=179.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ +|.++||+|+..+||.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999987 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+.++.. +.+. ...++.+++.+||++..|..+. .
T Consensus 94 ~eNi~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~l~L~~~~~~~~~-----~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------RAEV------------------------AERVAELLDLVGLPGSERKYPG-----Q 134 (353)
T ss_pred HHHHHHHHHhcCCC----------HHHH------------------------HHHHHHHHHHcCCCchhhCChh-----h
Confidence 99999975432210 0000 0124668999999998887665 4
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999877788998888765 488999999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
++.|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=359.73 Aligned_cols=206 Identities=25% Similarity=0.383 Sum_probs=178.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+++ +|+|.++|.++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999999876555 3789999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+.++... .+ . ...++++++.+||.+..|..+. .
T Consensus 96 ~eNi~~~l~~~~~~~----------~~----------~--------------~~~v~~~l~~~gl~~~~~r~~~-----~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------EE----------R--------------KQRVKEALELVDLAGFEDRYVD-----Q 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------HH----------H--------------HHHHHHHHHHcCCchhhcCChh-----h
Confidence 999999765332110 00 0 0124568889999888776654 5
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|++ .++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876688988887665 578899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998873
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=360.27 Aligned_cols=210 Identities=26% Similarity=0.393 Sum_probs=181.1
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|++..+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 69 (353)
T TIGR03265 5 LSIDNIRKRF-------------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDIT 69 (353)
T ss_pred EEEEEEEEEe-------------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 6677776554 23569999999999999999999999999999999999877 45899999998764
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...+|.+|||+|+..++|++||+||+.|....+. +. ...++++++.+++.++.++.. ..|||||||||+
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRva 144 (353)
T TIGR03265 70 RLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVA 144 (353)
T ss_pred CCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHH
Confidence 3 2345779999999999999999999999865432 22 246788899999988877653 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+..
T Consensus 145 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 145 LARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999999999999765 899999999986 67889999999985 7899999863
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=336.47 Aligned_cols=195 Identities=29% Similarity=0.411 Sum_probs=168.0
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 569999999999999999999999999999999999876 458999999987543 23456789999999889999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
||+.+....+...+..++++++.+++.+..++.. ..|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 91 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 165 (208)
T cd03268 91 ENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165 (208)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence 9998765433223456778889998887766553 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1062 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1062 ~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 166 ~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 166 RELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999877899999999976 46678999999985 6887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=358.54 Aligned_cols=211 Identities=25% Similarity=0.398 Sum_probs=180.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++..+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF-------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 46677776554 23569999999999999999999999999999999999987 4589999999886
Q ss_pred Chh-cccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 957 KQE-TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 957 ~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
... ..+|.+|||+|+..++|++||+||+.|....+. +.. +.++++++.+++.++.++.. ..|||||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRV 145 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRV 145 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 432 235789999999999999999999999876542 222 45678888888887776553 47999999999
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~ 222 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ 222 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999999999999999765 899999999986 67889999999985 7899999863
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=357.63 Aligned_cols=208 Identities=21% Similarity=0.308 Sum_probs=179.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDL 257 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 257 (1472)
.+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 356899999999999999999999999999999999999997 9999999999876544 467999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
++|++||+||+.|..+..+... .+. ...+..+++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------~~~------------------------~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------QER------------------------KEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------HHH------------------------HHHHHHHHHhcCCchhhhCCh
Confidence 9999999999998755432110 000 012356788999988877766
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++|+|++.|+. .++..++|+|+
T Consensus 128 ~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~ 201 (363)
T TIGR01186 128 DE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIV 201 (363)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 54 9999999999999999999999999999999999999999999999776688988887664 57889999999
Q ss_pred EecCCeEEEecChhHHHH
Q 045902 418 LLSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~~ 435 (1472)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999988753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=337.71 Aligned_cols=192 Identities=30% Similarity=0.404 Sum_probs=163.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCC-CCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI-HSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~-~~~~lTv~ 981 (1472)
+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.+||++|++. .+...|+.
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999876 458999999987654445567999999974 34467999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
||+.+...........++++++.+++.+..++.. ..||||||||++|||+|+.+|++|+|||||+|||+.++..+
T Consensus 91 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 165 (205)
T cd03226 91 EELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165 (205)
T ss_pred HHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH
Confidence 9998765433222346778889999887666543 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1062 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1062 ~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 166 ~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 166 GELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 9999999877999999999976 46678999999986 5653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=361.95 Aligned_cols=198 Identities=26% Similarity=0.362 Sum_probs=173.2
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|++||+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 569999999999999999999999999999999999877 458999999987643 22347899999999999999999
Q ss_pred HHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 982 ESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 982 e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
||+.|....+. +.. ..++++++.+++.++.++.. ..|||||||||+|||||+.+|++|+||||||+||+.+
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~ 169 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKL 169 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999865432 222 45678888888888777654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1058 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+..+.+.|+++.++ |.|+|++|||+. ++.+.+|++++|++ |+++..|+..
T Consensus 170 r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~~ 220 (356)
T PRK11650 170 RVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTPV 220 (356)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 99999999999765 999999999976 68889999999985 7999999864
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.20 Aligned_cols=195 Identities=31% Similarity=0.468 Sum_probs=164.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 569999999999999999999999999999999999876 458999999987643 22345789999999888999999
Q ss_pred HHHHHHHHcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 982 ESLLYSAWLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 982 e~l~~~~~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
|++.+..... ... ...++++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||+|||+.+
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~ 165 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 9998765432 111 134567788888876666543 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1058 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
+..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 166 ~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 166 REELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999764 899999999976 46788999999986 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=359.09 Aligned_cols=210 Identities=26% Similarity=0.371 Sum_probs=180.1
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeE--EEEEEcCcc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIE--GSISISGYP 955 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~--G~i~i~G~~ 955 (1472)
+.++|+++.+ +++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+ |+|.++|.+
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~~ 70 (362)
T TIGR03258 6 IRIDHLRVAY-------------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADRD 70 (362)
T ss_pred EEEEEEEEEE-------------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCEE
Confidence 5667776554 234699999999999999999999999999999999998774 47 999999987
Q ss_pred CCh-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHH
Q 045902 956 KKQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR 1030 (1472)
Q Consensus 956 ~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqR 1030 (1472)
... ...+|.+|||+|+..++|.+||+||+.|....+. +.. ..++++++.++|.++.++.. ..||||||||
T Consensus 71 ~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QR 145 (362)
T TIGR03258 71 LTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQR 145 (362)
T ss_pred CCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHH
Confidence 643 2235679999999999999999999999865432 222 45778889999988877654 4799999999
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~--g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+.
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~ 223 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEP 223 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999876 799999999976 57889999999985 799999986
Q ss_pred C
Q 045902 1109 G 1109 (1472)
Q Consensus 1109 ~ 1109 (1472)
.
T Consensus 224 ~ 224 (362)
T TIGR03258 224 Q 224 (362)
T ss_pred H
Confidence 3
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=351.34 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=177.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999998 899999999886532 2467999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.|.++..+... .+ . ...++.+++.+||.+.+++.+++
T Consensus 97 v~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------AA----------A--------------RALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCH----------HH----------H--------------HHHHHHHHHHcCCchHhcCchhh----
Confidence 9999998655432110 00 0 00135678899999888888765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|++++.|+. .++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999965 588999887765 47889999999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999988754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=320.32 Aligned_cols=203 Identities=25% Similarity=0.354 Sum_probs=178.3
Q ss_pred cccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh----cccceeEEeccCCC
Q 045902 898 IEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE----TFARISGYCEQNDI 973 (1472)
Q Consensus 898 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~----~~~~~~gyv~Q~~~ 973 (1472)
.++++++++++||+.|++||++||+|||||||||.+.++.|...+ .+|.|.+||.++... ..+.-+||+||++.
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccch
Confidence 345678999999999999999999999999999999999998874 589999999987542 22335899999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCc-h-----HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCcccc
Q 045902 974 HSPNVTIYESLLYSAWLRLPK-D-----MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1047 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~l~~~~-~-----~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LD 1047 (1472)
.|..+||+||+......+... + ...+++++.+.+.++++... ..||||||+|+.|||||+.+|+.++||
T Consensus 90 IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 90 IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEec
Confidence 999999999998765554311 1 23568899999999998764 369999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1048 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1048 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
||++|+||-+...|.++++.|.+.|..|++|-|... +....|||..++.+ |++...|.++
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 999999999999999999999999999999999976 78999999999986 7999999864
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=359.16 Aligned_cols=218 Identities=25% Similarity=0.359 Sum_probs=184.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|..+++ +|+|.++|+++....+ ++.++||+|++.++|.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999987 8999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+ . ...++.+++.+||++..|..+. .
T Consensus 104 ~eNi~~~l~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~p~-----~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------AAE----------I--------------TPRVMEALRMVQLEEFAQRKPH-----Q 144 (375)
T ss_pred HHHHHHHHhhcCCC----------HHH----------H--------------HHHHHHHHHHcCCchhhhCChh-----h
Confidence 99999975432211 000 0 0124567899999988887665 5
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+||||++|||..++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999887788888877654 588899999999999999
Q ss_pred EEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 045902 425 VYQGPREYVLDFFESVGFRCPERKGAADFL 454 (1472)
Q Consensus 425 v~~G~~~~~~~~F~~~G~~cp~~~~~adfl 454 (1472)
+..|+++++. ..|...-.|+|+
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhc
Confidence 9999998873 245544455554
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=336.64 Aligned_cols=196 Identities=28% Similarity=0.427 Sum_probs=167.6
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999876 358999999987642 3567899999998888899999
Q ss_pred HHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHH
Q 045902 983 SLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058 (1472)
Q Consensus 983 ~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~ 1058 (1472)
++.+....+. +. ...++++++.+++.+..++.. ..||||||||++||+||+.+|++|+|||||+|||+.++
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 167 (220)
T cd03293 93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 9987654332 11 234667888888876655543 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEEcCC
Q 045902 1059 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGHVIYAGPL 1108 (1472)
Q Consensus 1059 ~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~-gg~v~~~g~~ 1108 (1472)
..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ +|+++..+++
T Consensus 168 ~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 168 EQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999865 4899999999976 46788999999985 4889888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=352.27 Aligned_cols=210 Identities=25% Similarity=0.375 Sum_probs=176.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSY-------------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEe-------------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 46677776554 235699999999999999999999999999999999998763 589999999875
Q ss_pred Ch--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHH
Q 045902 957 KQ--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR 1030 (1472)
Q Consensus 957 ~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqR 1030 (1472)
.. ...++.+||++|++.+++.+||.|++.+.+... .+.. ..++++++.+++.+..++.+ ..||||||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qr 143 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRR 143 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHH
Confidence 32 234567999999999999999999998655432 2222 34567788888877666654 4799999999
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 219 (303)
T TIGR01288 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP 219 (303)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999878999999999986 57788999999985 789998875
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=357.50 Aligned_cols=206 Identities=22% Similarity=0.355 Sum_probs=178.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCce--eEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVS--GRVTYCGHELTEFVP-QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+++ + |+|.++|+++....+ ++.++||+|+..++|.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35899999999999999999999999999999999999987 7 999999999876544 36799999999999999
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.|+.+..+.. +.+ . ...++.+++.+||++..|+.+.
T Consensus 95 tv~enl~~~l~~~~~~----------~~~----------~--------------~~~v~~~l~~~gL~~~~~~~~~---- 136 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------KAD----------I--------------AERVADALKLVGLGDAAAHLPA---- 136 (362)
T ss_pred cHHHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHhcCCCchhhCChh----
Confidence 9999999976533211 000 0 0124668899999988887765
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCcchHHhccCeEEEecC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHIT-DVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~-~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +.|+|++.|++ .++..++|+|++|++
T Consensus 137 -~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 137 -QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKD 214 (362)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998765 78888877664 578899999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|+++..|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (362)
T TIGR03258 215 GRLAAHGEPQALY 227 (362)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=320.90 Aligned_cols=206 Identities=26% Similarity=0.387 Sum_probs=173.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC----ceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ----RTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 261 (1472)
.++|+|||+.+++||+++|+||||+|||||||+|+|..++. +|+|.++|++++...+. +.++||||....||+
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 57999999999999999999999999999999999999887 89999999999988764 569999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh-CCcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL-GLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~ 340 (1472)
|||+|||..++...... +.. .. ..|.+.+.| .|....++.-|+
T Consensus 93 LTVeENL~~g~~~~~~~------------~~~-----~~------------------~~e~v~~lFP~Lker~~~~aG~- 136 (237)
T COG0410 93 LTVEENLLLGAYARRDK------------EAQ-----ER------------------DLEEVYELFPRLKERRNQRAGT- 136 (237)
T ss_pred CcHHHHHhhhhhccccc------------ccc-----cc------------------cHHHHHHHChhHHHHhcCcccC-
Confidence 99999998875432110 000 00 022233333 244445666665
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||.++|||||+++|++|+|||||.||-|.-..+|.+.++++.+..+.||++ ..|......+++||.++|.
T Consensus 137 ----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 137 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLE 211 (237)
T ss_pred ----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEEe
Confidence 99999999999999999999999999999999999999999999998766766665 5799999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|+|++.|+.+++..
T Consensus 212 ~Griv~~G~~~eL~~ 226 (237)
T COG0410 212 NGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999988753
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=337.98 Aligned_cols=206 Identities=28% Similarity=0.352 Sum_probs=172.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 36999999999999999999999999999999999999887 8999999998765432 35699999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.+..+..... ...+ . ...++.+++.+||++..++.+++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~---------~~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 90 DSLTVFENVAFPLREHTRL---------SEEE----------I--------------REIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred CCCcHHHHHHHHHhhccCC---------CHHH----------H--------------HHHHHHHHHHcCCchhhcCChhh
Confidence 9999999998864321000 0000 0 00134578889998777776654
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++. ++.+++|+|++|
T Consensus 137 -----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l 210 (235)
T cd03261 137 -----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL 210 (235)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999987655788888877654 677899999999
Q ss_pred cCCeEEEecChhHH
Q 045902 420 SEGEIVYQGPREYV 433 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~ 433 (1472)
++|++++.|+.+++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999998765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=335.93 Aligned_cols=190 Identities=24% Similarity=0.355 Sum_probs=162.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 369999999999999999999999999999999999876 358999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
.+||.||+.+....+. .. ...++++++.+++.+..++.. ..||||||||++||+||+.+|++|+|||||+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~ 168 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGN 168 (216)
T ss_pred cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 9999999988654332 11 235677888888877666543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+
T Consensus 169 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 169 LDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999877999999999976 46678999999986 44
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=333.60 Aligned_cols=194 Identities=26% Similarity=0.436 Sum_probs=165.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 469999999999999999999999999999999999876 458999999987643 34567899999999999999999
Q ss_pred HHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHH
Q 045902 983 SLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058 (1472)
Q Consensus 983 ~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~ 1058 (1472)
|+.+....+. +. ...++++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~ 164 (210)
T cd03269 90 QLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164 (210)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 9987654432 11 134567788888876655543 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1059 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1059 ~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 165 ~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 165 ELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999877899999999976 46678999999985 6777653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=335.60 Aligned_cols=198 Identities=28% Similarity=0.391 Sum_probs=168.4
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 3569999999999999999999999999999999999876 358999999987532 234567899999999999999
Q ss_pred HHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 980 IYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 980 v~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
|+|++.+....+. +. ...++++++.+++.+..++.. ..||||||||++||+||+.+|++|+|||||+|||+
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~ 164 (220)
T cd03265 90 GWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP 164 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence 9999988654432 21 234677888888876666543 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1056 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 165 ~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 165 QTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 9999999999999876 899999999976 47778999999985 788887764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=338.88 Aligned_cols=197 Identities=29% Similarity=0.401 Sum_probs=167.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh---c-ccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE---T-FARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~---~-~~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 469999999999999999999999999999999999876 3589999999876431 1 234689999999999999
Q ss_pred CHHHHHHHHHHcCCC-----------c---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 045902 979 TIYESLLYSAWLRLP-----------K---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~-----------~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il 1044 (1472)
||+|++.+....... . ...++++++.+++.+..++. +..||||||||++||++|+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999876543211 1 13456778888887665554 3479999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1045 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1045 ~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 999999999999999999999999877999999999986 46778999999985 788888864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=352.67 Aligned_cols=206 Identities=26% Similarity=0.372 Sum_probs=176.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999987 8999999999875432 35799999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.+.....+.. ..+ . ...++.+++.+||++..++.+.
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gL~~~~~~~~~- 139 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------KAE----------I--------------KARVTELLELVGLSDKADRYPA- 139 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCchhhhCChh-
Confidence 9999999998865432210 000 0 0013567889999887777665
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|
T Consensus 140 ----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l 214 (343)
T PRK11153 140 ----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999876688998888765 4777899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=349.54 Aligned_cols=197 Identities=24% Similarity=0.401 Sum_probs=172.3
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
++.+|+|+||++++||++||+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 3569999999999999999999999999999999999876 458999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 980 IYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 980 v~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
+.|++.+.+.++. +. ...++++++.+++.+..++.+ +.||||||||++||+||+++|++|+|||||+|||+
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~ 166 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDP 166 (301)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 9999998776543 22 245678888999888777664 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1056 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 167 ~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 167 NQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999965 799999999986 57888999999985 799999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=356.31 Aligned_cols=211 Identities=21% Similarity=0.342 Sum_probs=180.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSF-------------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEE-------------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 46778877654 23469999999999999999999999999999999999887 4589999999876
Q ss_pred Ch-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 957 KQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 957 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
.. ...+|.+||++|+..++|++||.||+.|....+. +.. ..++++++.+++.++.++.. ..|||||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRV 153 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRV 153 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHH
Confidence 43 2235779999999999999999999999765432 222 35677888888887777653 47999999999
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|++ |+++..|+..
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 230 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTPR 230 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999999999999999865 999999999986 67889999999985 7999998753
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=313.51 Aligned_cols=210 Identities=26% Similarity=0.411 Sum_probs=180.1
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
++.+|++|.+ .++++|++||++++|||++||+||||||||||||+|+|...+ .+|++.++|.+.+
T Consensus 2 i~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 4567888776 357899999999999999999999999999999999998774 4899999999875
Q ss_pred h---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC----CCch--HHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 958 Q---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR----LPKD--MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~----~~~~--~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
. ....+..+.+||+..+....||+|-+.++..-. .+.+ ...+++++..++.+++.+.. ..||||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEq 141 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQ 141 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHH
Confidence 4 345667799999999888899999999875432 1112 33678899999999887654 47999999
Q ss_pred HHHHHHHHHhh------CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1029 KRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1029 qRl~iA~aL~~------~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
|||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++.||.+. ...++|++++|++ |++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Grv 219 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GRV 219 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-CeE
Confidence 99999999975 346899999999999999999999999999999999999999986 6778999999985 799
Q ss_pred EEEcCCC
Q 045902 1103 IYAGPLG 1109 (1472)
Q Consensus 1103 ~~~g~~~ 1109 (1472)
+..|++.
T Consensus 220 ~a~g~p~ 226 (259)
T COG4559 220 IASGSPQ 226 (259)
T ss_pred eecCCHH
Confidence 9999874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=355.10 Aligned_cols=198 Identities=27% Similarity=0.416 Sum_probs=171.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.++|.+||.
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 569999999999999999999999999999999999877 458999999988643 22346799999999999999999
Q ss_pred HHHHHHHHcC-----CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 982 ESLLYSAWLR-----LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 982 e~l~~~~~l~-----~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
||+.|....+ .+.. ..++++++.+++.++.++.. ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~L 167 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGAL 167 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 9999876531 1211 35677888888877766653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1054 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|+.++..+.+.|+++.++ |.|+|++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 168 D~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 168 DAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999866 899999999986 57889999999985 7999998753
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=338.31 Aligned_cols=209 Identities=27% Similarity=0.414 Sum_probs=173.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRF-------------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEE-------------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5567766554 23569999999999999999999999999999999999876 35899999998754
Q ss_pred hh-cccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-----Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 958 QE-TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-----PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 958 ~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-----~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. ..++.++|++|++.+++.+||.||+.+....+. ... +.++++++.+++.+..+... ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 31 224568999999998889999999987654321 111 34567788888876665543 47999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999875 899999999976 46788999999985 78888887
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 5
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=332.85 Aligned_cols=195 Identities=29% Similarity=0.436 Sum_probs=164.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++..|++
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 469999999999999999999999999999999999876 358999999987643 12245799999999888899999
Q ss_pred HHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 982 ESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 982 e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
||+.+....+. ..+ ..++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.+
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 165 (213)
T cd03301 91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165 (213)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 99987644322 112 34567778888876666543 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1058 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
+..+++.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 166 ~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 166 RVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999864 899999999976 46778999999985 6887765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=306.94 Aligned_cols=200 Identities=25% Similarity=0.411 Sum_probs=172.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
..+|+|||+.|++||++.|+||||||||||||+|.+...|+ +|+|.+||+++..... +|.+|+|+|+..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56999999999999999999999999999999999999998 9999999999976542 57899999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+..||.||+.|+.+..|...+ ++ +..+..+|+..||.+.++..
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~-----~i-----------------------------~~rV~~~L~~VgL~~k~~~l--- 134 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPR-----EI-----------------------------RRRVSEVLDLVGLKHKARAL--- 134 (223)
T ss_pred ccchHhhhhhhhhhccCCCHH-----HH-----------------------------HHHHHHHHHHhccchhhhcC---
Confidence 999999999999887664321 11 11245678999999888754
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
+..|||||||||+||||++.+|++|+.||||-.||+.++.+|++.+.++.+ .|+||+++.|. ..-+-.+-.+++.|
T Consensus 135 --P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~~rvl~l 210 (223)
T COG2884 135 --PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMRHRVLAL 210 (223)
T ss_pred --ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhccCcEEEE
Confidence 456999999999999999999999999999999999999999999999865 78999998764 33445566789999
Q ss_pred cCCeEEEecC
Q 045902 420 SEGEIVYQGP 429 (1472)
Q Consensus 420 ~~G~iv~~G~ 429 (1472)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=320.97 Aligned_cols=205 Identities=26% Similarity=0.341 Sum_probs=174.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC----CCceEEEEcCCC--CCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV----PQRTCAYISQHD--LHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~ 259 (1472)
.++|+|||+++.+||.++|+|+||||||||.++|+|..+|+ +|+|+++|.+..... ..+.+-+|+||+ .+.
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 37999999999999999999999999999999999999998 999999998776543 346799999997 678
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccc-cccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC-ADIMVG 338 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~vg 338 (1472)
|..||++.|.-+.+..+.. +.++ .+.++++.+||+.. ++
T Consensus 97 P~~tv~~~l~Epl~~~~~~----------~~~~--------------------------~i~~~L~~VgL~~~~l~---- 136 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLS----------KSQQ--------------------------RIAELLDQVGLPPSFLD---- 136 (252)
T ss_pred cchhHHHHHhhhhccCCcc----------HHHH--------------------------HHHHHHHHcCCCHHHHh----
Confidence 9999999997655432211 1111 13457888999863 34
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
.++..|||||||||+|||||+.+|++|++|||||+||++...+|++.|.++.+..+.|.++..| ...-+..+||||++
T Consensus 137 -R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH-dl~~v~~~cdRi~V 214 (252)
T COG1124 137 -RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH-DLALVEHMCDRIAV 214 (252)
T ss_pred -cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC-cHHHHHHHhhheee
Confidence 3455699999999999999999999999999999999999999999999999988888888665 56688899999999
Q ss_pred ecCCeEEEecChhHHHH
Q 045902 419 LSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~~ 435 (1472)
|++|++++.++.+++..
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999998864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=334.35 Aligned_cols=210 Identities=25% Similarity=0.392 Sum_probs=180.3
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.+++++|.++ ++..+|+|+|++|++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYP------------GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcC------------CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 45777777653 125799999999999999999999999999999999999874 5899999999854
Q ss_pred ----hhcccceeEEeccCCCC-CCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 958 ----QETFARISGYCEQNDIH-SPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 958 ----~~~~~~~~gyv~Q~~~~-~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
....++.+|||+|++.. +..-||.|.+.|+.... .+.+ .+++++++.+++.+++++. +..||||||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSGGqk 144 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----PFNLSGGQK 144 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCCcce
Confidence 35678889999999854 45779999999986543 3332 4678889999998887765 347999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
|||+||.+|+.+|++|+|||||||||+.++..+++.++++..+ |.|||++|||.+ .+.+.+|++++|++ |++++.|+
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~ 222 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGD 222 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCC
Confidence 9999999999999999999999999999999999999999877 689999999976 47788999999986 78999997
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
+
T Consensus 223 p 223 (235)
T COG1122 223 P 223 (235)
T ss_pred H
Confidence 5
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=324.90 Aligned_cols=198 Identities=27% Similarity=0.372 Sum_probs=164.9
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh----cccceeEEeccCCC--CCCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE----TFARISGYCEQNDI--HSPN 977 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~----~~~~~~gyv~Q~~~--~~~~ 977 (1472)
.+|+||||+|.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.... .+.+.+.+|+||+. +.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 599999999999999999999999999999999998774 589999999875432 46778999999984 6689
Q ss_pred CCHHHHHHHHHHcCC-C-chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 978 VTIYESLLYSAWLRL-P-KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~-~-~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
.||.+.|.-...... + ....+.++++.+||..-. +... +..||||||||++|||||+.+|++|+||||||+||+
T Consensus 99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~--l~R~--P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~ 174 (252)
T COG1124 99 RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF--LDRR--PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174 (252)
T ss_pred hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH--HhcC--chhcChhHHHHHHHHHHhccCCCEEEecCchhhhcH
Confidence 999999875544321 1 123466677777765321 1122 347999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1056 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
..+.+|+++|.++.++ |.|.|+++||.+. +...|||+++|++ |+++..+|.+
T Consensus 175 siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 175 SVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-CeEEEeechh
Confidence 9999999999999865 7899999999764 7778999999986 7999999864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=336.58 Aligned_cols=198 Identities=26% Similarity=0.374 Sum_probs=168.0
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hc-ccceeEEeccCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ET-FARISGYCEQNDIHSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~-~~~~~gyv~Q~~~~~~~ 977 (1472)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... .. .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 3569999999999999999999999999999999999876 358999999987532 12 23468999999999999
Q ss_pred CCHHHHHHHHHHcCCCc----hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 978 VTIYESLLYSAWLRLPK----DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~~----~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
+|++|++.+....+... ...++++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 164 (232)
T cd03218 90 LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGV 164 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccC
Confidence 99999998764433221 134567788888876655543 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 165 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 217 (232)
T cd03218 165 DPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTP 217 (232)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCH
Confidence 999999999999999877999999999986 57888999999985 788888875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=325.08 Aligned_cols=221 Identities=28% Similarity=0.369 Sum_probs=184.9
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC----ceEEEEcCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ----RTCAYISQHDLHH 259 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 259 (1472)
...++++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ ..++.-+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3467999999999999999999999999999999999999998 99999999999988764 4578899999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
++|||.||+..++..+.. +...-...+.. .+.++. ......+|+.+||.+++|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~~~~--------~~e~~~-----------~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRPRAR--------KEEREA-----------RERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhccccch--------hhHHHH-----------HHHHHHHHHHcCCchhhcchhhc
Confidence 999999999988654421 00000000000 000111 11245689999999999999987
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+..+.|++++- |...-+.+++|||+||
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIE-HdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIE-HDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEE-eccHHHhhhccEEEec
Confidence 9999999999999999999999999999999999999999999999886678877755 5677899999999999
Q ss_pred cCCeEEEecChhHHHH
Q 045902 420 SEGEIVYQGPREYVLD 435 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~~ 435 (1472)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999853
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=353.56 Aligned_cols=214 Identities=22% Similarity=0.335 Sum_probs=177.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+.. ...++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~---------~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQ---------GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCC---------CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 456777665421 0113579999999999999999999999999999999999877 35899999998764
Q ss_pred h---h---cccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHH
Q 045902 958 Q---E---TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 958 ~---~---~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq 1027 (1472)
. . ..++.+||++|++.+++.+||+||+.+....+. +.. ..++++++.+++.+..++.. ..|||||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 145 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQ 145 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 2 1 235679999999999999999999988754432 221 34667888888877666543 4799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 146 ~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g 223 (343)
T PRK11153 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQG 223 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999765 899999999976 46778999999985 7899988
Q ss_pred CCC
Q 045902 1107 PLG 1109 (1472)
Q Consensus 1107 ~~~ 1109 (1472)
+..
T Consensus 224 ~~~ 226 (343)
T PRK11153 224 TVS 226 (343)
T ss_pred CHH
Confidence 753
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=352.67 Aligned_cols=210 Identities=28% Similarity=0.433 Sum_probs=177.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|+++....+ ++.++||+|++.++|.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999987 8999999999876544 3679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+....... .++.+ . ...++.+++.+||++..|..+. .
T Consensus 92 ~eni~~~~~~~~~~~~------~~~~~----------~--------------~~~~~~~l~~~~L~~~~~~~~~-----~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNAAA----------I--------------KAKVTQLLEMVQLAHLADRYPA-----Q 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCHHH----------H--------------HHHHHHHHHHcCCchhhhCChh-----h
Confidence 9999987543110000 00000 0 0124568899999888876665 5
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876688888877654 588899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=333.34 Aligned_cols=194 Identities=30% Similarity=0.452 Sum_probs=166.0
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCCHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+||.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 69999999999999999999999999999999999876 358999999987643 23456799999999989999999
Q ss_pred HHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 982 ESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 982 e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
||+.+....+. +. ...++++++.+++.+..+..+ ..||||||||++||+||+.+|++|+|||||+|||+.+
T Consensus 97 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 171 (218)
T cd03266 97 ENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHH
Confidence 99987654332 21 134677888888877666543 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1058 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
+..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 172 ~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 172 TRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999877999999999976 56778999999986 6776543
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=358.76 Aligned_cols=210 Identities=27% Similarity=0.364 Sum_probs=178.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 L~~~nls~~y-------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~ 68 (402)
T PRK09536 4 IDVSDLSVEF-------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVE 68 (402)
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcC
Confidence 5566766543 34679999999999999999999999999999999999877 45899999998764
Q ss_pred h---hcccceeEEeccCCCCCCCCCHHHHHHHHHHc-----CC-Cc--hHHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 958 Q---ETFARISGYCEQNDIHSPNVTIYESLLYSAWL-----RL-PK--DMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l-----~~-~~--~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
. ...++.+||++|+..+++.+||+|++.+.... .. .. ...++++++.+++.++.++.+ +.||||
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 3 34567899999999998999999999875321 11 11 245778889999888777654 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||+.|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G 221 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999999999999999999999999999999877999999999986 47789999999985 7889999
Q ss_pred CCC
Q 045902 1107 PLG 1109 (1472)
Q Consensus 1107 ~~~ 1109 (1472)
+..
T Consensus 222 ~~~ 224 (402)
T PRK09536 222 PPA 224 (402)
T ss_pred CHH
Confidence 864
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=353.76 Aligned_cols=200 Identities=24% Similarity=0.312 Sum_probs=171.7
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcc----cceeEEeccCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETF----ARISGYCEQNDI 973 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~----~~~~gyv~Q~~~ 973 (1472)
+++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ... ++.+|||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34679999999999999999999999999999999999987 458999999988643 222 568999999999
Q ss_pred CCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC
Q 045902 974 HSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1049 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP 1049 (1472)
++|.+||+||+.|...... +.. +.+.++++.++|.+..++.. ..|||||||||+|||||+.+|+||+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999999998765432 222 44667788888876666543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1050 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1050 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|+|||+.++..+.+.++++.++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+..
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999754 899999999976 47788999999985 7899998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.17 Aligned_cols=207 Identities=27% Similarity=0.379 Sum_probs=178.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC----CCCCceEEEEcCCC-CCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE----FVPQRTCAYISQHD-LHHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~~~~~~~yv~Q~d-~~~~ 260 (1472)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.+.|. +|+|.++|.+... ...++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999998 8999999998762 23367899999996 4456
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.-||.|.++|+.+..+.... ++ ...++.+++.+||.+.+|..+-
T Consensus 94 ~~tV~~evafg~~n~g~~~~--------------------e~--------------~~rv~~~l~~vgl~~~~~r~p~-- 137 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE--------------------EI--------------EERVAEALELVGLEELLDRPPF-- 137 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH--------------------HH--------------HHHHHHHHHHcCchhhccCCcc--
Confidence 67999999999776554210 01 1135678999999999887665
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++++.+..+.|+|++.|+ ...+.+++|++++|+
T Consensus 138 ---~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~ 213 (235)
T COG1122 138 ---NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLD 213 (235)
T ss_pred ---ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999998777888887654 668889999999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877653
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=336.06 Aligned_cols=197 Identities=27% Similarity=0.344 Sum_probs=165.9
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC-----CCCeeEEEEEEcCccCCh-----hcccceeEEeccCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK-----TGGYIEGSISISGYPKKQ-----ETFARISGYCEQND 972 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~-----~~~~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~ 972 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|.. + +.+|+|.++|.+... ..+++.++|++|++
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 46999999999999999999999999999999999987 4 458999999987532 23456789999998
Q ss_pred CCCCCCCHHHHHHHHHHcCC-Cc----hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCcccc
Q 045902 973 IHSPNVTIYESLLYSAWLRL-PK----DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1047 (1472)
Q Consensus 973 ~~~~~lTv~e~l~~~~~l~~-~~----~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LD 1047 (1472)
.++ .+||+||+.+....+. .. +..++++++.+++.+..+.... +..||||||||++||++|+.+|++|+||
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllD 166 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLD 166 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 887 7999999988654332 11 2345677888888765554320 2479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1048 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1048 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+|||+.++..+++.|++++++ +|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 167 EPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred CCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 999999999999999999999877 99999999976 46778999999985 788888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=355.65 Aligned_cols=210 Identities=25% Similarity=0.365 Sum_probs=177.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~i~~l~~~~-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAY-------------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEe-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5667776554 23569999999999999999999999999999999999876 35899999998764
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...++.+||++|+..+++.+||+||+.|....+. +.. ..++++++.+++.+..++.. ..|||||||||+
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRva 143 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVA 143 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHH
Confidence 3 2234679999999999999999999998765432 222 35677888888877666553 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 144 LAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~ 219 (369)
T PRK11000 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (369)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999999999999765 899999999976 57788999999985 7899988753
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=348.74 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=176.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 899999999875421 1356999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.+.++..+... .+ . ...++.+++.+||++..|+.+++
T Consensus 83 v~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~---- 124 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------DE----------A--------------EERAEELLELFELGEAADRPVGT---- 124 (302)
T ss_pred HHHHHHHHHHHcCCCH----------HH----------H--------------HHHHHHHHHHcCChhHhCCchhh----
Confidence 9999998655432110 00 0 00235688999999888887765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++.|++ .++.+++|+|++|++|+
T Consensus 125 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGR 201 (302)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 478988887765 47888999999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
+++.|+.+++..
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=332.22 Aligned_cols=197 Identities=24% Similarity=0.360 Sum_probs=170.9
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 569999999999999999999999999999999999876 45899999998764322 256899999998888999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
|+.+....+...+..+.++++.+++.+..+... ..||||||||++||++|+.+|++|+|||||+|||+.++..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~ 164 (223)
T TIGR03740 90 NLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164 (223)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH
Confidence 998765443333456778889999887666543 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|++.
T Consensus 165 ~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 165 ELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 999999877999999999986 46788999999985 7899988864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=354.99 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=177.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+++ +|+|.++|+++....+ ++.++||+|++.+||.+||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999988 8999999999876544 4689999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
.||+.|+.+..+.. +.+ . ...++.+++.+||.+..|..+. .
T Consensus 109 ~eNi~~~l~~~~~~----------~~~----------~--------------~~~v~~~l~~l~L~~~~~~~~~-----~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------KAE----------I--------------ASRVNEMLGLVHMQEFAKRKPH-----Q 149 (377)
T ss_pred HHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCchhhcCChh-----h
Confidence 99999975432210 000 0 0124568899999988776665 5
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||++||..++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999998776788988887664 588899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=353.16 Aligned_cols=211 Identities=25% Similarity=0.376 Sum_probs=179.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++..+ ++..+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 47778876654 23469999999999999999999999999999999999977 4589999999876
Q ss_pred Ch-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 957 KQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 957 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
.. ...+|.+||++|+..++|++||.||+.|....+. +.. ..++++++.+++.++.++.. ..|||||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRV 158 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRV 158 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 43 2346789999999999999999999998765432 222 35677888888877766553 47999999999
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+..
T Consensus 159 aLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 235 (377)
T PRK11607 159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEPE 235 (377)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCHH
Confidence 9999999999999999999999999999999999998654 899999999976 67889999999985 7999999863
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=319.80 Aligned_cols=201 Identities=24% Similarity=0.397 Sum_probs=179.2
Q ss_pred ccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 899 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
+++++.+++|+||.++||+++|++|||||||||++++|+|... +.+|+|.++|.+..+.. +.+|||.|.+..+++.+
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKM 87 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhh-hhhcccChhhhccCccC
Confidence 4567889999999999999999999999999999999999987 45999999999987543 45689999999999999
Q ss_pred CHHHHHHHHHHcCCCch----HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 979 TIYESLLYSAWLRLPKD----MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~----~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
||.|.|.|.|.++.-+. ...+..++.+++.+.....+ ..||.|++|++.+-.+++++|++++||||+||||
T Consensus 88 tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLD 162 (300)
T COG4152 88 TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162 (300)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 99999999999975433 34566788888887776654 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|.+.+.+.+.+.++++.|.|||+++|+++ .+-++||++++|++ |+.|..|++.
T Consensus 163 PVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 163 PVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred hhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 99999999999999999999999999986 68889999999986 7888889863
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=338.35 Aligned_cols=197 Identities=29% Similarity=0.388 Sum_probs=165.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 569999999999999999999999999999999999876 358999999987542 234567899999999999
Q ss_pred CCCHHHHHHHHHHc---------CCCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 045902 977 NVTIYESLLYSAWL---------RLPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l---------~~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il 1044 (1472)
.+||+||+.+.... .... .+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999764321 1111 13456677888876655543 3479999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1045 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1045 ~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999999764 899999999986 46678999999985 788888875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=334.98 Aligned_cols=196 Identities=28% Similarity=0.378 Sum_probs=167.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh------cccceeEEeccCCCCCCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE------TFARISGYCEQNDIHSPN 977 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~------~~~~~~gyv~Q~~~~~~~ 977 (1472)
.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 69999999999999999999999999999999999877 3589999999876421 235678999999999999
Q ss_pred CCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 978 VTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
+|+.||+.+....+. .. ...++++++.+++.+..+... ..||||||||++||++|+.+|++|+|||||+||
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~L 171 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcC
Confidence 999999987654332 11 134567788888876665543 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 172 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 172 DPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999765 899999999976 46778999999985 788888864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=324.42 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=175.6
Q ss_pred ccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCCCC
Q 045902 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQNDIH 974 (1472)
Q Consensus 899 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~~~ 974 (1472)
.++...+++|||+++++||++||+||||||||||+|+|+|..++ .+|+|.++|.++.. ...+.-++.-+|...+
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 34678899999999999999999999999999999999999874 58999999998643 2234457888999999
Q ss_pred CCCCCHHHHHHHHHHcC--------CC-----ch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 045902 975 SPNVTIYESLLYSAWLR--------LP-----KD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV 1038 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~--------~~-----~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~ 1038 (1472)
|+++||.||+..++..+ .+ .+ +...++++.+||.+.+|...+ +||+||||||.|||||+
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa 165 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALA 165 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHh
Confidence 99999999998764422 11 11 345678888899998888765 69999999999999999
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
.+|++|+||||.+||.+.....+.+.|+++.++ |.||+++-|+++. ++.+|||+++|+. |+++..|++.
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 999999999999999999999999999999874 7999999999985 8999999999985 7999999874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=349.86 Aligned_cols=206 Identities=28% Similarity=0.409 Sum_probs=176.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999998 899999999876432 2467999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.|.+...+... .+ . ....+.+++.+||++..++.+++
T Consensus 131 v~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~ll~~~~L~~~~~~~~~~---- 172 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------RE----------I--------------EAVIPSLLEFARLESKADARVSD---- 172 (340)
T ss_pred HHHHHHHHHHHcCCCH----------HH----------H--------------HHHHHHHHHHcCCchhhCCChhh----
Confidence 9999987554332100 00 0 00134578889999888888765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ .|.|++++.|+. .++.++||+|++|++|+
T Consensus 173 -LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 173 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGR 249 (340)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 588988887664 58889999999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
++++|+.+++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=332.49 Aligned_cols=188 Identities=31% Similarity=0.430 Sum_probs=160.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh------c-ccceeEEeccCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE------T-FARISGYCEQNDIHS 975 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~------~-~~~~~gyv~Q~~~~~ 975 (1472)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 569999999999999999999999999999999999876 4589999999875421 1 245789999999999
Q ss_pred CCCCHHHHHHHHHHcCCC-c---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 976 PNVTIYESLLYSAWLRLP-K---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~-~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
+.+||+|++.+....+.. . ...++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (218)
T cd03255 95 PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTG 169 (218)
T ss_pred CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcc
Confidence 999999999987654321 1 235677888888876665543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1052 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
|||+.++..+.+.|+++++ .|+|||++||+++. + +.+|++++|++|
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G 216 (218)
T cd03255 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDG 216 (218)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCC
Confidence 9999999999999999987 58999999999763 4 489999999863
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=353.57 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=176.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 35899999999999999999999999999999999999987 8999999999875443 3679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|..+..+.. +.+ . ...++.+++.+||++..|+.+++
T Consensus 93 ~eni~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~lgL~~~~~~~~~~----- 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------KEE----------I--------------NQRVNQVAEVLQLAHLLDRKPKA----- 133 (369)
T ss_pred HHHHHhHHhhcCCC----------HHH----------H--------------HHHHHHHHHHcCChhhhcCChhh-----
Confidence 99999875432210 000 0 01235678999998888876654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+..+.|+|++.|++ .++.+++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876688988887765 478899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=318.64 Aligned_cols=201 Identities=28% Similarity=0.422 Sum_probs=169.0
Q ss_pred cccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCCCCC
Q 045902 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQNDIHS 975 (1472)
Q Consensus 900 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~~~~ 975 (1472)
+++.++|+|||+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.. +..++-++||||....|
T Consensus 13 YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 4567899999999999999999999999999999999998773 48999999998753 33456789999999999
Q ss_pred CCCCHHHHHHHHHHcCCCch--H-HHHHHHHHcc-cccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 976 PNVTIYESLLYSAWLRLPKD--M-FVEEVMELVE-MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~~~--~-~~~~v~~~l~-l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
|.+||+|||..++..+.... . ..+++.+++= |...+++..| .|||||||-++|||||+++|++|+|||||.
T Consensus 91 ~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDEPs~ 165 (237)
T COG0410 91 PRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSE 165 (237)
T ss_pred hhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99999999998766543211 1 2556666553 3333444433 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1052 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
||-|.-.+.|.+.|+++.++ |.||+++-+... ...+.+||.++|.+ |++++.|+..
T Consensus 166 GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~ 222 (237)
T COG0410 166 GLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAA 222 (237)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHH
Confidence 99999999999999999866 779999988765 47789999999985 8999999864
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=331.61 Aligned_cols=205 Identities=29% Similarity=0.386 Sum_probs=173.0
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHHG 260 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 260 (1472)
++|+|+|+++++||+++|+||||||||||+++|+|.++++ +|+|.++|+++....+ ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 8999999998765421 356999999999999
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.+||+||+.+.....+.. ..+ . ...++.+++.+||++..++.+.
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~-- 139 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------KAE----------I--------------EERVLELLELVGLEDKADAYPA-- 139 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHCCChhhhhcChh--
Confidence 999999998754322110 000 0 0013457888999887776664
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|+
T Consensus 140 ---~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~ 215 (233)
T cd03258 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVME 215 (233)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 49999999999999999999999999999999999999999999998775578998888775 46778999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=305.13 Aligned_cols=192 Identities=27% Similarity=0.357 Sum_probs=169.1
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHHHHH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYESLLY 986 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 986 (1472)
..+++|.+||++||+||||||||||||+|+|...+ .+|+|.|||.+... ....|-+++++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 35678999999999999999999999999998874 58999999998654 3445678999999999999999999987
Q ss_pred HHH--cCCCc--hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 987 SAW--LRLPK--DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 987 ~~~--l~~~~--~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
+.. ++++. .+.++.+...+|+.++.+++. ..|||||||||++||+|+++-+||+||||+|.|||.-+.++.
T Consensus 95 Gl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl 169 (231)
T COG3840 95 GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEML 169 (231)
T ss_pred cCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHH
Confidence 643 33333 256888999999999888764 379999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1063 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1063 ~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.++.+++++ +.|++++||+|+ +.....|+++++++ |+|.+.|+.
T Consensus 170 ~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 170 ALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999754 899999999997 78899999999986 899999985
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=328.22 Aligned_cols=200 Identities=27% Similarity=0.354 Sum_probs=169.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999887 8999999998764 246799999999999999999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.+.....+.. ..+ . ...++.+++.+||++..++.++ .|
T Consensus 92 e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~-----~L 132 (220)
T cd03293 92 DNVALGLELQGVP----------KAE----------A--------------RERAEELLELVGLSGFENAYPH-----QL 132 (220)
T ss_pred HHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCChhhhhCCcc-----cC
Confidence 9998764322110 000 0 0013557888999877776665 49
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec--CCe
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS--EGE 423 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~--~G~ 423 (1472)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++.|++. ++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999987656789888887764 6778999999999 799
Q ss_pred EEEecCh
Q 045902 424 IVYQGPR 430 (1472)
Q Consensus 424 iv~~G~~ 430 (1472)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=330.42 Aligned_cols=196 Identities=28% Similarity=0.450 Sum_probs=167.0
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCCH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 569999999999999999999999999999999999876 458999999987642 2345679999999998889999
Q ss_pred HHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 981 YESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
+||+.+....+. +.. ..++++++.+++.+..++.. ..||+|||||++||++|+.+|++|+|||||+|||+.
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 167 (220)
T cd03263 93 REHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHH
Confidence 999987654332 221 34567788888876655543 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+++..|+.
T Consensus 168 ~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 168 SRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999976 599999999986 46678999999985 788888864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=331.70 Aligned_cols=197 Identities=29% Similarity=0.441 Sum_probs=164.6
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hc-ccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ET-FARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~-~~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... .. .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 469999999999999999999999999999999999876 458999999987532 11 245689999999999999
Q ss_pred CHHHHHHHHHHcCCCc--hHHHHHHHHHc-ccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 979 TIYESLLYSAWLRLPK--DMFVEEVMELV-EMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~--~~~~~~v~~~l-~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
|++||+.+........ ...++++++.+ ++.+..++. +..||||||||++|||+|+.+|++|+|||||+|||+
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 165 (222)
T cd03224 91 TVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 165 (222)
T ss_pred cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 9999998865433211 12345666666 354444443 347999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1056 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 166 ~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 166 KIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 9999999999999877899999999976 46788999999985 788888864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=333.99 Aligned_cols=197 Identities=22% Similarity=0.382 Sum_probs=167.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-----hcccceeEEeccCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-----ETFARISGYCEQNDIHSPN 977 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~~~~~ 977 (1472)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 569999999999999999999999999999999999876 458999999987642 2345678999999988899
Q ss_pred CCHHHHHHHHHH-cC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 978 VTIYESLLYSAW-LR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 978 lTv~e~l~~~~~-l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
+||.|++.+... .+ ...+ ..++++++.+++.+..+... ..||||||||++||++|+.+|++|+|||||+|
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~ 166 (240)
T PRK09493 92 LTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTSA 166 (240)
T ss_pred CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999987542 11 1111 34567888888876655543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (240)
T PRK09493 167 LDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP 220 (240)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence 9999999999999999877999999999976 46678999999985 789988875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=363.94 Aligned_cols=214 Identities=28% Similarity=0.430 Sum_probs=179.9
Q ss_pred ceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 875 PLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
...+.|+||++.++.. ++.++|+|+||+|+|||.+||+||||+||||+.++|...++ |.+|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCe
Confidence 3478999999998753 34679999999999999999999999999999999999887 45999999999
Q ss_pred cCCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcc-------cccccccccCCCCCCCCC
Q 045902 955 PKKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVE-------MKALRNSLVGLPGVDGLS 1024 (1472)
Q Consensus 955 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~-------l~~~~~~~~~~~~~~~LS 1024 (1472)
|+.+ ..+++.+|+|.|+|.+|. -||+||+.|+.. ...++.++.+.+..+ +.+-.|+.+|..| ..||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG-~qLS 606 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG-SQLS 606 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCcc-cccc
Confidence 9754 557789999999999986 599999999764 223333433333322 2333577777665 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
||||||++|||||++||.||||||.||+||+++...|.+.|.++.+ ++|||++.|+.+ ..+.+|+|+++++ |+++.
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E 682 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVE 682 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEe
Confidence 9999999999999999999999999999999999999999998865 599999999865 7889999999985 79999
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|.-
T Consensus 683 ~G~h 686 (716)
T KOG0058|consen 683 MGTH 686 (716)
T ss_pred cccH
Confidence 9964
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=340.33 Aligned_cols=201 Identities=23% Similarity=0.317 Sum_probs=169.6
Q ss_pred ccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hc----ccceeEEeccC
Q 045902 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ET----FARISGYCEQN 971 (1472)
Q Consensus 899 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~----~~~~~gyv~Q~ 971 (1472)
.++++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .. .++.++|++|+
T Consensus 33 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred hcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 34567899999999999999999999999999999999998763 58999999987532 11 13568999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCcccc
Q 045902 972 DIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1047 (1472)
Q Consensus 972 ~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LD 1047 (1472)
+.+++.+||.||+.+...... ... ..++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+||
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999988654321 111 34567788888876666554 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1048 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1048 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999754 899999999976 46788999999985 788888875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=328.84 Aligned_cols=189 Identities=27% Similarity=0.385 Sum_probs=160.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 469999999999999999999999999999999999876 358999999987642 124567899999999889
Q ss_pred CCCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
.+|+.|++.+....+. .. +..++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~ 167 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 9999999988654321 11 134567777777766555443 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++|
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 9999999999999999877999999999976 567789999999863
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=350.07 Aligned_cols=206 Identities=28% Similarity=0.434 Sum_probs=172.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 263 (1472)
++++|+|++++||+.++|+|+||||||||+++|+|+++++ +|+|++||++..+..+ +++++||+|++.+++ -|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6899999999999999999999999999999999999987 9999999999988764 588999999998886 49
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
+|||+.++.... .++++.+..+.+. +.+.+.-+...||.+| +.++
T Consensus 411 ireNi~l~~~~~----------------------s~e~i~~al~~a~------------l~~~v~~p~GLdt~ig-e~G~ 455 (559)
T COG4988 411 IRENILLARPDA----------------------SDEEIIAALDQAG------------LLEFVPKPDGLDTVIG-EGGA 455 (559)
T ss_pred HHHHhhccCCcC----------------------CHHHHHHHHHHhc------------HHHhhcCCCcccchhc-cCCC
Confidence 999998863210 0112222222111 1222222456799998 6889
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
+|||||+|||++|||++.+++++++||||++||.+|+..|.+.|.++++ ++|+++..|++ +...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCc
Confidence 9999999999999999999999999999999999999999999999986 48888888865 4567899999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999998853
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=342.95 Aligned_cols=229 Identities=25% Similarity=0.378 Sum_probs=188.2
Q ss_pred cCCCCCcceEEEeeeEEEEEEecCCCcCCChhHhHHHHHHhhhhhcccccCCcccceeeeceeeEEeCCeEEEEEcCCCC
Q 045902 131 VGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGS 210 (1472)
Q Consensus 131 ~~~~~p~~~v~f~~L~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilGp~Gs 210 (1472)
..+..|.-.++|+|++.+-. .+++||+++||+|++||.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46677778899999986631 234599999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHh
Q 045902 211 GKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAEL 287 (1472)
Q Consensus 211 GKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 287 (1472)
||||+|++|.++.+ + +|+|.+||+++++..+ ++.+|||||+..+|.+ ||.+||.|+..-. ..+...+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sa----s~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSA----SDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCc----CHHHHHHH
Confidence 99999999999998 5 8999999999988765 5789999998888855 9999999873211 11111122
Q ss_pred hHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeE
Q 045902 288 SRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367 (1472)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~ill 367 (1472)
|++ ++ + .|. ...|++..+|.|| +.+.-|||||||||++|||++.+|+|++
T Consensus 461 ~k~---a~---------------~--------hd~---i~~l~~GY~T~VG-erG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKR---AG---------------L--------HDV---ISRLPDGYQTLVG-ERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHH---cC---------------c--------HHH---HHhccccchhhHh-hcccccccchHHHHHHHHHHhcCCCeEE
Confidence 211 11 1 122 3457788999999 5666799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecChhHHHH
Q 045902 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 368 LDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~~~~~~ 435 (1472)
+|||||.||+.|..++++.+... ..++|+|+..|.. .+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999984 3689999988754 5778999999999999999999999875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=337.98 Aligned_cols=218 Identities=27% Similarity=0.395 Sum_probs=176.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCCC-CC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHDL-HH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 259 (1472)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999986532 1357999999863 34
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc--ccccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD--ICADIMV 337 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~--~~~dt~v 337 (1472)
..+||+||+.|.....+.. +.+ . ...++++++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------EEE----------I--------------ENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------HHH----------H--------------HHHHHHHHHHcCCCchhhccCCc
Confidence 4689999998864322110 000 0 01235678899997 5566555
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
+.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.|+. .++.+++|+|+
T Consensus 143 -----~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~ 216 (287)
T PRK13637 143 -----FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRII 216 (287)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 459999999999999999999999999999999999999999999999875688988888764 47778999999
Q ss_pred EecCCeEEEecChhHHHH---HHHhcCCCCCC
Q 045902 418 LLSEGEIVYQGPREYVLD---FFESVGFRCPE 446 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~~---~F~~~G~~cp~ 446 (1472)
+|++|+++++|+.+++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23345655544
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=335.59 Aligned_cols=209 Identities=26% Similarity=0.389 Sum_probs=173.1
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKF-------------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 5567776554 23469999999999999999999999999999999999876 35899999998753
Q ss_pred h-----------hcccceeEEeccCCCCCCCCCHHHHHHHHHH-cCC-Cch---HHHHHHHHHcccccccccccCCCCCC
Q 045902 958 Q-----------ETFARISGYCEQNDIHSPNVTIYESLLYSAW-LRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVD 1021 (1472)
Q Consensus 958 ~-----------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~ 1021 (1472)
. ...++.++|++|++.+++..|+.||+.+... .+. ..+ ..++++++.+++.+..+.. +.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~ 143 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSY-----PR 143 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC-----hh
Confidence 2 1235678999999998999999999987533 121 111 3456778888887655543 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1022 ~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 144 ~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~ 221 (250)
T PRK11264 144 RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GR 221 (250)
T ss_pred hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999976 46678999999985 78
Q ss_pred EEEEcCC
Q 045902 1102 VIYAGPL 1108 (1472)
Q Consensus 1102 v~~~g~~ 1108 (1472)
+++.|+.
T Consensus 222 i~~~~~~ 228 (250)
T PRK11264 222 IVEQGPA 228 (250)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=327.62 Aligned_cols=200 Identities=29% Similarity=0.428 Sum_probs=167.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999887 8999999998765332 3579999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.+.....+.. ..+ . ...++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KAE----------I--------------RARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCChhhhhcChhh-----
Confidence 99998754321100 000 0 00134578889998877776654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998765578888887765 467789999999999999
Q ss_pred EEec
Q 045902 425 VYQG 428 (1472)
Q Consensus 425 v~~G 428 (1472)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.13 Aligned_cols=198 Identities=26% Similarity=0.338 Sum_probs=165.6
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 469999999999999999999999999999999999876 358999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHHc---------CCC-c--hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 045902 977 NVTIYESLLYSAWL---------RLP-K--DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l---------~~~-~--~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il 1044 (1472)
.+||+||+.+.... ... . ...++++++.+++.+..+.. +..||||||||++||++|+.+|++|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999764210 011 1 23456778888887665554 3479999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1045 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1045 ~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|.+ |+++..|+..
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 999999999999999999999999764 899999999976 46678999999985 7888888753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=329.90 Aligned_cols=213 Identities=25% Similarity=0.344 Sum_probs=172.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+... ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 36777877665210 011469999999999999999999999999999999999876 4589999999876
Q ss_pred Chh------cc-cceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 957 KQE------TF-ARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 957 ~~~------~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
... .. ++.++|++|++.+++.+|++||+.+....+. ..+ ..++++++.+++.+..++.. ..|||
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSg 148 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP-----SELSG 148 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCH
Confidence 421 12 2568999999988999999999988654321 211 34667888888876655543 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ..+.+|++++|.+ |+++.
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~~-G~i~~ 225 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMRD-GRLTA 225 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999975 5899999999975 3455689999975 78988
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.+++
T Consensus 226 ~~~~ 229 (233)
T PRK11629 226 ELSL 229 (233)
T ss_pred Eecc
Confidence 8875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=329.11 Aligned_cols=198 Identities=39% Similarity=0.706 Sum_probs=167.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC-CeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+......++.++|++|++.+++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 5799999999999999999999999999999999998651 135899999998875545667899999999999999999
Q ss_pred HHHHHHHHcCCC----ch---HHHHH-HHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 982 ESLLYSAWLRLP----KD---MFVEE-VMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 982 e~l~~~~~l~~~----~~---~~~~~-v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
||+.+......+ .. ...++ .++.+++.++.++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 999986543321 11 12334 67777776665544 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999877899999999985468899999999985 7887754
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=335.27 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=173.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 477888876652 3469999999999999999999999999999999999876 3589999999764
Q ss_pred ChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 045902 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVE 1036 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~a 1036 (1472)
. ..++.++|++|++.+++.+||+||+.+... ...+..++++++.+++.+..+.. +..||||||||++||++
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~lara 147 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK--GQWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARA 147 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc--chHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHH
Confidence 3 345678999999998888999999987421 11234567788888887665554 34799999999999999
Q ss_pred HhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1037 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1037 L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 148 L~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 148 LIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 9999999999999999999999999999999865 4899999999976 46778999999985 788887764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=333.96 Aligned_cols=197 Identities=26% Similarity=0.401 Sum_probs=167.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 469999999999999999999999999999999999876 358999999987532 234567899999999999999
Q ss_pred HHHHHHHHHHcCC-Cch---HHHHHHHHHccccc--ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 980 IYESLLYSAWLRL-PKD---MFVEEVMELVEMKA--LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 980 v~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~--~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
++||+.+....+. +.. ..++++++.+++.+ ..++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 166 (242)
T cd03295 92 VEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166 (242)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccC
Confidence 9999987654432 211 34567788888864 44443 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 167 D~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999765 899999999976 46788999999985 788888875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=328.02 Aligned_cols=190 Identities=26% Similarity=0.382 Sum_probs=161.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999876 458999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
.+|+.||+.+....+. ..+ ..++++++.+++.+..++.. ..||||||||++||++|+.+|++++|||||+|
T Consensus 92 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~ 166 (214)
T cd03292 92 DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGN 166 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 9999999988654332 111 34567788888876655543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |+
T Consensus 167 LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 167 LDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999777999999999975 46668999999985 44
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=340.74 Aligned_cols=214 Identities=21% Similarity=0.333 Sum_probs=172.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++.. ....+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 5677776654210 0012469999999999999999999999999999999999877 45899999998864
Q ss_pred h-----hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccc--cccccccCCCCCCCCCH
Q 045902 958 Q-----ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMK--ALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 958 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~--~~~~~~~~~~~~~~LSg 1025 (1472)
. ...++.+||++|++. .+...||+|++.|..... .+.. ..++++++.+++. +..++. +..|||
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSg 147 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSG 147 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCC-----cccCCH
Confidence 3 234578999999863 334579999998865432 2222 3456778887775 444443 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~ 225 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCEL 225 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999975 46678999999986 78998
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|+.
T Consensus 226 ~g~~ 229 (287)
T PRK13637 226 QGTP 229 (287)
T ss_pred ECCH
Confidence 8875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=333.66 Aligned_cols=196 Identities=28% Similarity=0.397 Sum_probs=166.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+.+||++|++.+++.+||.|
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHH
Confidence 469999999999999999999999999999999999876 358999999987643 2345799999998889999999
Q ss_pred HHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHH
Q 045902 983 SLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058 (1472)
Q Consensus 983 ~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~ 1058 (1472)
|+.+....+ .+.. ..++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~ 164 (255)
T PRK11248 90 NVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTR 164 (255)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 998764432 2221 3467788888887665543 347999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEEcCC
Q 045902 1059 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGHVIYAGPL 1108 (1472)
Q Consensus 1059 ~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~-gg~v~~~g~~ 1108 (1472)
..+.+.|+++++ .|+|||++||+++ ++.+.||++++|++ +|+++..++.
T Consensus 165 ~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 165 EQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999854 5899999999986 57788999999985 5889887764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=309.23 Aligned_cols=210 Identities=23% Similarity=0.363 Sum_probs=180.6
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC----ceEEEEcCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ----RTCAYISQHDLHH 259 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 259 (1472)
+++++++|||+.+++||+++++|||||||||.+.++.|+..++ +|+|.+||.+++.++.. ..+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 3467999999999999999999999999999999999999998 99999999999987643 3689999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
..|||+|||.-..+.+.... .+++ .+...+.+|+.|.|.|++|..-.
T Consensus 92 r~LtV~dNi~~vlE~~~~d~--------~~~~------------------------~~~~l~~LL~ef~i~hlr~~~a~- 138 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL--------KKAE------------------------RKEELDALLEEFHITHLRDSKAY- 138 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch--------hHHH------------------------HHHHHHHHHHHhchHHHhcCccc-
Confidence 99999999976654322100 0000 11234678999999999997655
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.||||||||+-|||||+.+|+.++||||++|.||.+..+|.+.++.+++ .|.-|+++-| .-.|+.+.+||.+++
T Consensus 139 ----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDH-NVREtL~i~dRaYIi 212 (243)
T COG1137 139 ----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDH-NVRETLDICDRAYII 212 (243)
T ss_pred ----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccc-cHHHHHhhhheEEEE
Confidence 4999999999999999999999999999999999999999999999976 6888888765 456999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 045902 420 SEGEIVYQGPREYVLD 435 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~~ 435 (1472)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999998753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=330.47 Aligned_cols=192 Identities=28% Similarity=0.463 Sum_probs=159.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC--CCCCH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS--PNVTI 980 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~--~~lTv 980 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+. ..+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999876 35899999998653 3456789999998763 34899
Q ss_pred HHHHHHHHHcC-----CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 981 YESLLYSAWLR-----LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 981 ~e~l~~~~~l~-----~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
+||+.+..... ... ...++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321 111 234667788888876555543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877999999999976 46678999999974 5 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=329.91 Aligned_cols=209 Identities=29% Similarity=0.430 Sum_probs=172.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 35999999999999999999999999999999999999887 8999999998765432 3579999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.+.....+...+. .. .+. ....+.+++.+||++..++.+++
T Consensus 92 ~e~l~~~~~~~~~~~~~------~~----------~~~--------------~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERP------PE----------AEI--------------RAKVHELLKLVQLDWLADRYPAQ----- 136 (239)
T ss_pred HHHHhhhhhhccccccC------CH----------HHH--------------HHHHHHHHHHcCChhhhhcChhh-----
Confidence 99998864322110000 00 000 00134578889998777766654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999875578999888776 467789999999999999
Q ss_pred EEecChhHH
Q 045902 425 VYQGPREYV 433 (1472)
Q Consensus 425 v~~G~~~~~ 433 (1472)
++.|+.+++
T Consensus 216 ~~~~~~~~~ 224 (239)
T cd03296 216 EQVGTPDEV 224 (239)
T ss_pred EEecCHHHH
Confidence 999998765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=338.10 Aligned_cols=218 Identities=24% Similarity=0.339 Sum_probs=175.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC-------CCCceEEEEcCCCC-
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF-------VPQRTCAYISQHDL- 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 257 (1472)
+++|+|||++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 89999999987532 11357999999862
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-cccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIM 336 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 336 (1472)
.+...||+||+.|+.+..+.. ..+ . ...++.+++.+||. +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EED----------A--------------KQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHCCCChhhhhCC
Confidence 344579999998864322110 000 0 00235678899997 556765
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+. .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.|++ .++.+++|+|
T Consensus 143 ~~-----~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 143 PF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 54 49999999999999999999999999999999999999999999999776688998888765 4788899999
Q ss_pred EEecCCeEEEecChhHHH---HHHHhcCCCCCC
Q 045902 417 ILLSEGEIVYQGPREYVL---DFFESVGFRCPE 446 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~---~~F~~~G~~cp~ 446 (1472)
++|++|++++.|+++++. ..+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999988764 233344555443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=329.71 Aligned_cols=214 Identities=27% Similarity=0.373 Sum_probs=173.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++++ +|+|.++|.++....+ ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 35999999999999999999999999999999999999887 8999999998865432 2459999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.+......... ..+. .......+. ...++.+++.+||++..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~---~~~~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~--- 142 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA---RARREEREA--------------RERAEELLERVGLADLADRPAG--- 142 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc---cccccHHHH--------------HHHHHHHHHHcCccchhhCChh---
Confidence 999999988643221000 0000 000000000 0123567889999877776665
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++ .++|+|++.|++. ++.+++|++++|++
T Consensus 143 --~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~ 218 (236)
T cd03219 143 --ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQ 218 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeC
Confidence 4999999999999999999999999999999999999999999999876 5788888877654 77789999999999
Q ss_pred CeEEEecChhHH
Q 045902 422 GEIVYQGPREYV 433 (1472)
Q Consensus 422 G~iv~~G~~~~~ 433 (1472)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (236)
T cd03219 219 GRVIAEGTPDEV 230 (236)
T ss_pred CEEEeecCHHHh
Confidence 999999998776
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=326.94 Aligned_cols=205 Identities=29% Similarity=0.402 Sum_probs=171.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999887 899999998875321 1357999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.+..+..+.. ..+ . ...++.+++.+||++..|+.+++
T Consensus 90 v~~~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVP----------GAE----------R--------------RERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCHHHhhCChhh----
Confidence 999998864322110 000 0 00135678899998877777654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999775578888877665 47788999999999999
Q ss_pred EEEecChhHH
Q 045902 424 IVYQGPREYV 433 (1472)
Q Consensus 424 iv~~G~~~~~ 433 (1472)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=326.71 Aligned_cols=201 Identities=21% Similarity=0.317 Sum_probs=167.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++++ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999887 8999999998876432 2469999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.+.....+.. ..+ . ...++.+++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------PAE----------I--------------NSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------HHH----------H--------------HHHHHHHHHHcCCchhhhCChh
Confidence 99999999998864321110 000 0 0013457888999877776654
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
.|||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++++..+.|+|++.|++. ++. .+|++++
T Consensus 145 -----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~-~~~~~~~ 217 (233)
T PRK11629 145 -----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAK-RMSRQLE 217 (233)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH-hhCEEEE
Confidence 499999999999999999999999999999999999999999999987656789999888764 444 4689999
Q ss_pred ecCCeEEEecCh
Q 045902 419 LSEGEIVYQGPR 430 (1472)
Q Consensus 419 L~~G~iv~~G~~ 430 (1472)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=373.58 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=172.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++++||+.++|+||||||||||+++|+|.+ |+ +|+|.+||+++++..+ ++.++||+|++.+|+ .
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 36899999999999999999999999999999999999 76 8999999999988764 468999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.++..- ..++++.+..+.+.+ +..++ .|++..||.||+ .+
T Consensus 438 TI~eNI~~g~~~----------------------~~~eei~~al~~a~l---------~~~i~--~lp~G~dT~vge-~G 483 (588)
T PRK11174 438 TLRDNVLLGNPD----------------------ASDEQLQQALENAWV---------SEFLP--LLPQGLDTPIGD-QA 483 (588)
T ss_pred CHHHHhhcCCCC----------------------CCHHHHHHHHHHhCH---------HHHHH--hccccccccccc-CC
Confidence 999999885210 011223333332222 12222 356677999995 57
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..||||||||++||||++++|+||+||||||+||+.++..|.+.|+++. .++|+|+..|++ ++.+.+|+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 7899999999999999999999999999999999999999999999875 468999988887 567789999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=331.04 Aligned_cols=211 Identities=22% Similarity=0.355 Sum_probs=173.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHY-------------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEee-------------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 36677777654 23569999999999999999999999999999999999876 3589999999875
Q ss_pred Chh----cccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc--hHHHHHHHHHc-ccccccccccCCCCCCCCCHHHHH
Q 045902 957 KQE----TFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK--DMFVEEVMELV-EMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 957 ~~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~--~~~~~~v~~~l-~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
... ..++.++|++|+..+++.+||.||+.+........ ...++++++.+ ++.+..+.. ...|||||||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~q 144 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQ 144 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHH
Confidence 431 23567999999999999999999998754322111 12345566666 354444432 3479999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGD 222 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHH
Confidence 999999999999999999999999999999999999999877999999999976 57889999999985 7899998763
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=337.35 Aligned_cols=210 Identities=26% Similarity=0.360 Sum_probs=173.3
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++ ++..+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 56777776542 12469999999999999999999999999999999999876 35899999998764
Q ss_pred h---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 958 Q---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
. ...++.+||++|++. .++..||.||+.|..... .+. ...++++++.+++.+..++.. ..|||||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~q 145 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKK 145 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567999999963 445689999998764322 121 134567788888876666543 479999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 146 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 222 (274)
T PRK13647 146 RVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDK 222 (274)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999877999999999976 46688999999985 788888875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=335.23 Aligned_cols=207 Identities=24% Similarity=0.302 Sum_probs=174.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDL 257 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 257 (1472)
.+.+|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 457999999999999999999999999999999999999887 8999999998765322 246999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
+++.+||+||+.+.....+... .+ . ...++.+++.+||++..++.+
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~~l~~~~~~~~ 158 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPR----------AE----------R--------------EERAAEALELVGLEGWEHKYP 158 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCCH----------HH----------H--------------HHHHHHHHHHcCCHhHhhCCc
Confidence 9999999999988643221100 00 0 001345788999988788777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|+++
T Consensus 159 ~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~ 232 (269)
T cd03294 159 DE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIA 232 (269)
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 54 99999999999999999999999999999999999999999999997655789888887654 6788999999
Q ss_pred EecCCeEEEecChhHHH
Q 045902 418 LLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~ 434 (1472)
+|++|++++.|+.+++.
T Consensus 233 ~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 233 IMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=325.44 Aligned_cols=193 Identities=34% Similarity=0.512 Sum_probs=163.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCCH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+.+|+|+||++++| ++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 46999999999999 999999999999999999999876 458999999987542 2345678999999999999999
Q ss_pred HHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 981 YESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
.|++.+....+. +. ...++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 164 (211)
T cd03264 90 REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164 (211)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 999987654432 11 234667888888876665543 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
++..+.+.|+++++ +.|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 165 ~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 165 ERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999976 599999999976 36678999999986 6777654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=336.10 Aligned_cols=210 Identities=20% Similarity=0.328 Sum_probs=174.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTR-------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 36777877654 23569999999999999999999999999999999999876 3589999999875
Q ss_pred Ch------hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC--CCch---HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 957 KQ------ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR--LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 957 ~~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~--~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
.. ...++.++|++|+..+++.+|+.||+.+..... .+.. ..++++++.+++.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSg 146 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSG 146 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCH
Confidence 32 123456899999998899999999998754321 1221 24566788888877666543 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~ 224 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVA 224 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 47788999999985 78998
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|+.
T Consensus 225 ~g~~ 228 (269)
T PRK11831 225 HGSA 228 (269)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=326.64 Aligned_cols=195 Identities=26% Similarity=0.405 Sum_probs=163.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|+++....+ ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999887 8999999998765431 3569999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.+.....+... .+ . ...++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------KE----------R--------------RERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------HH----------H--------------HHHHHHHHHHcCCchhhhcChh
Confidence 999999999988654321100 00 0 0013557889999887776665
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++. ++ +.+|++++
T Consensus 140 -----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~ 212 (218)
T cd03255 140 -----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIE 212 (218)
T ss_pred -----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEE
Confidence 499999999999999999999999999999999999999999999997645789999888765 44 48999999
Q ss_pred ecCCeE
Q 045902 419 LSEGEI 424 (1472)
Q Consensus 419 L~~G~i 424 (1472)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=328.66 Aligned_cols=194 Identities=27% Similarity=0.324 Sum_probs=159.9
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCC--CCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQND--IHS 975 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~--~~~ 975 (1472)
.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 69999999999999999999999999999999999876 458999999987642 23456799999998 466
Q ss_pred CCCCHHHHHHHHHHcCCC-c-hH---H-HHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccC
Q 045902 976 PNVTIYESLLYSAWLRLP-K-DM---F-VEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~-~-~~---~-~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDE 1048 (1472)
+.+||+||+.+....... . +. . .+++++.+++. ...+.. +..||||||||++|||+|+.+|++|+|||
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDE 171 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIADE 171 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 789999999876543321 1 11 1 13567777774 344443 34799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1049 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1049 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 172 PTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 99999999999999999999866 899999999976 46668999999985 6777544
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=336.36 Aligned_cols=225 Identities=25% Similarity=0.352 Sum_probs=179.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-------CCceEEEEcCCC-C
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-------PQRTCAYISQHD-L 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 257 (1472)
+.+|+|||+.|++||+++|+||||||||||+++|+|.++++ +|+|+++|.++.... .++.++||+|++ .
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 95 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcch
Confidence 35999999999999999999999999999999999999987 899999999875321 135799999986 2
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-cccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIM 336 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 336 (1472)
.+...||.||+.|+....+.. +.+ .+ ..++.+++.+||. ...++.
T Consensus 96 ~l~~~tv~~~l~~~~~~~~~~----------~~~----------~~--------------~~~~~~l~~~~L~~~~~~~~ 141 (288)
T PRK13643 96 QLFEETVLKDVAFGPQNFGIP----------KEK----------AE--------------KIAAEKLEMVGLADEFWEKS 141 (288)
T ss_pred hcccchHHHHHHhHHHHcCCC----------HHH----------HH--------------HHHHHHHHHcCCChhhccCC
Confidence 344579999999875432210 000 00 0134578888986 355655
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|
T Consensus 142 ~-----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri 214 (288)
T PRK13643 142 P-----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYV 214 (288)
T ss_pred c-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEE
Confidence 4 45999999999999999999999999999999999999999999999875 488998888765 5777899999
Q ss_pred EEecCCeEEEecChhHHH---HHHHhcCCCCCCCCChHHHH
Q 045902 417 ILLSEGEIVYQGPREYVL---DFFESVGFRCPERKGAADFL 454 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~---~~F~~~G~~cp~~~~~adfl 454 (1472)
++|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 215 YLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 999999999999998874 34556777777655444433
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=325.92 Aligned_cols=204 Identities=36% Similarity=0.538 Sum_probs=169.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD---KSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~---~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ ++ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3579999999999999999999999999999999999988 65 89999999987643345679999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHH-HHHHhCCcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDY-VLKILGLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-il~~lgL~~~~dt~vg~~ 340 (1472)
+||+||+.|........... + +.. ....+. .++.+++++..++.++
T Consensus 96 ~tv~enl~~~~~~~~~~~~~-------~-----------~~~-------------~~~~~~~~l~~~~l~~~~~~~~~-- 142 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSS-------D-----------AIR-------------KKRVEDVLLRDLALTRIGGNLVK-- 142 (226)
T ss_pred CcHHHHHHHHHHhhcccccc-------h-----------HHH-------------HHHHHHHHHHhhcchhhhccccc--
Confidence 99999999865432110000 0 000 001122 6788888777666554
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++..++.+++|++++|+
T Consensus 143 ---~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 143 ---GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred ---CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 4999999999999999999999999999999999999999999999875 478999999887668999999999999
Q ss_pred CCeEEEec
Q 045902 421 EGEIVYQG 428 (1472)
Q Consensus 421 ~G~iv~~G 428 (1472)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=339.75 Aligned_cols=214 Identities=24% Similarity=0.313 Sum_probs=173.3
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+.... .....+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56777777653110 012469999999999999999999999999999999999877 45899999998763
Q ss_pred h-------hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccc-cccccccCCCCCCCCC
Q 045902 958 Q-------ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGLS 1024 (1472)
Q Consensus 958 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~LS 1024 (1472)
. ..+++.+|||+|++. .+...||.||+.|...... +.. ..++++++.++|. ++.++. +..||
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LS 147 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS-----PFELS 147 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCC
Confidence 1 234567999999862 2335799999988754322 222 3567788888885 455543 35799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G~i~ 225 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-GTVF 225 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999976 57788999999985 7899
Q ss_pred EEcCC
Q 045902 1104 YAGPL 1108 (1472)
Q Consensus 1104 ~~g~~ 1108 (1472)
+.|+.
T Consensus 226 ~~g~~ 230 (290)
T PRK13634 226 LQGTP 230 (290)
T ss_pred EECCH
Confidence 99875
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=324.20 Aligned_cols=199 Identities=28% Similarity=0.410 Sum_probs=168.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
++|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5899999999999999999999999999999999999887 8999999998765432 35799999999999999999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.+..+..+.. ..+ . ...++.+++.+||++..++.+++ |
T Consensus 91 ~~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~-----L 131 (213)
T cd03301 91 DNIAFGLKLRKVP----------KDE----------I--------------DERVREVAELLQIEHLLDRKPKQ-----L 131 (213)
T ss_pred HHHHHHHHhcCCC----------HHH----------H--------------HHHHHHHHHHcCCHHHHhCChhh-----C
Confidence 9998764322110 000 0 00135578889998877777654 9
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEE
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv 425 (1472)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875678999888775 4777899999999999999
Q ss_pred Eec
Q 045902 426 YQG 428 (1472)
Q Consensus 426 ~~G 428 (1472)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=325.06 Aligned_cols=195 Identities=23% Similarity=0.361 Sum_probs=163.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999887 8999999998764321 35799999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.+..+..+.. ..+ . ...++.+++.+||++..++.++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~- 137 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP----------PRD----------A--------------NERVSAALEKVGLEGKAHALPM- 137 (216)
T ss_pred ccccHHHHHHHHHHhcCCC----------HHH----------H--------------HHHHHHHHHHcCChhhhhCChh-
Confidence 9999999998864422110 000 0 0013457888999887776665
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ +++.+++|++++|
T Consensus 138 ----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l 211 (216)
T TIGR00960 138 ----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTL 211 (216)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999865 478888887765 4677899999999
Q ss_pred cCCeE
Q 045902 420 SEGEI 424 (1472)
Q Consensus 420 ~~G~i 424 (1472)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=326.64 Aligned_cols=189 Identities=28% Similarity=0.412 Sum_probs=158.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCC-CCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDI-HSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~-~~~~l 978 (1472)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999876 458999999987532 234567899999974 36678
Q ss_pred CHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 979 TIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
|+.||+.+...... .. ...++++++.+++.+..++.. ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 92 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 166 (211)
T cd03225 92 TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166 (211)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99999987654321 11 134567788888876555443 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+|
T Consensus 167 ~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 167 PAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999877999999999976 466779999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=328.05 Aligned_cols=196 Identities=30% Similarity=0.433 Sum_probs=164.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCCH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ....+.++|++|++.+++.+|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 569999999999999999999999999999999999876 358999999987532 1223568999999988889999
Q ss_pred HHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 981 YESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
+|++.+....+. +. ...++++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~ 166 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHH
Confidence 999987654432 21 134567778888776555443 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1057 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++..+.+.|+++++ +|+|||+++|+++. + +.+|++++|++ |+++..|+.
T Consensus 167 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 167 SRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999975 58999999999863 4 45999999985 788888864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=320.17 Aligned_cols=196 Identities=31% Similarity=0.589 Sum_probs=163.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCcc
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-YIEGSISISGYP 955 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~G~~ 955 (1472)
.++|+|++|.++.+ .+++.+|+|+|++|++||++||+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999988542 13457999999999999999999999999999999999987632 468999999987
Q ss_pred CCh--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHH
Q 045902 956 KKQ--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTI 1033 (1472)
Q Consensus 956 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~i 1033 (1472)
... ...++.++|++|++.+++.+||+|++.+..... .+.. +..||+|||||++|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------~~~~-----~~~LS~Ge~qrl~l 129 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------GNEF-----VRGISGGERKRVSI 129 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------cccc-----hhhCCHHHHHHHHH
Confidence 643 234567999999999999999999998754221 1222 34799999999999
Q ss_pred HHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1034 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1034 A~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|+||+.+|++|+|||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.|
T Consensus 130 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 130 AEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred HHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999765 678777776654467889999999986 7887654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=331.31 Aligned_cols=197 Identities=28% Similarity=0.416 Sum_probs=167.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 569999999999999999999999999999999999876 458999999987532 12346789999999999999
Q ss_pred CHHHHHHHHHHcCC--Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 979 TIYESLLYSAWLRL--PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~--~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
|+.||+.+....+. .. ...++++++.+++.+..+.. ...||||||||++||++|+.+|++|+|||||+||
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGV 168 (241)
T ss_pred cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99999987643321 11 13466778888876655543 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+.+.+++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 169 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 221 (241)
T PRK10895 169 DPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTP 221 (241)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCH
Confidence 999999999999999877999999999975 57788999999985 788888875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=327.95 Aligned_cols=198 Identities=27% Similarity=0.357 Sum_probs=166.0
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---h-cccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---E-TFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~-~~~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... . ..++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 569999999999999999999999999999999999876 458999999987532 1 1245689999999999999
Q ss_pred CHHHHHHHHHHcCCCc-hHHHHHHHHHcc-cccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 979 TIYESLLYSAWLRLPK-DMFVEEVMELVE-MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~-~~~~~~v~~~l~-l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
|+.|++.+....+... ....+++++.++ +.+..++. +..||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~ 165 (230)
T TIGR03410 91 TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS 165 (230)
T ss_pred cHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 9999998765433222 234567777776 44444443 3479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1057 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+.+
T Consensus 166 ~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 217 (230)
T TIGR03410 166 IIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD 217 (230)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999864 899999999976 46668999999985 7899988864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=333.89 Aligned_cols=216 Identities=22% Similarity=0.310 Sum_probs=176.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCC-CCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHD-LHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 261 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999987 9999999999865332 35799999997 46778
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.|+.+..+.. ..+ . ...++.+++.+||++..|..++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------HEE----------M--------------KERVNEALELVGMQDFKEREPA--- 139 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------HHH----------H--------------HHHHHHHHHHCCCHhHhhCCcc---
Confidence 89999998864322110 000 0 0013567889999887776665
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|++.|++. ++ ..+|+|++|++
T Consensus 140 --~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~ 215 (279)
T PRK13650 140 --RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998756889999988865 45 57999999999
Q ss_pred CeEEEecChhHHHH---HHHhcCCCCC
Q 045902 422 GEIVYQGPREYVLD---FFESVGFRCP 445 (1472)
Q Consensus 422 G~iv~~G~~~~~~~---~F~~~G~~cp 445 (1472)
|+++..|+++++.. .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999887642 2334454433
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=325.66 Aligned_cols=192 Identities=26% Similarity=0.339 Sum_probs=161.9
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---h---cccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---E---TFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~---~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. . .+++.++|++|++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 469999999999999999999999999999999999876 458999999987532 1 24567899999998888
Q ss_pred CCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
.+|+.||+.+....+. ..+ ..++++++.+++.+..++. +..||||||||++||+||+.+|++|+|||||+|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGN 167 (222)
T ss_pred cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 9999999988654432 222 2355677888877655544 347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|++ |+++
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 168 LDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999877899999999976 46678999999986 5653
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=340.26 Aligned_cols=206 Identities=28% Similarity=0.412 Sum_probs=173.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999999887 899999999875422 2457999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.+.++..+.. .. +.. ...+.+++.+||++..++.+++
T Consensus 94 v~e~l~~~~~~~~~~----------~~----------~~~--------------~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMS----------TR----------EIE--------------AVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCC----------HH----------HHH--------------HHHHHHHHHCCChhHhcCchhh----
Confidence 999998654322110 00 000 0134578889999888877764
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|++++.|++. ++.+++|++++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 5789888877654 7788999999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
+++.|+.+++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=325.15 Aligned_cols=190 Identities=25% Similarity=0.386 Sum_probs=161.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-----hcccceeEEeccCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-----ETFARISGYCEQNDIHSPN 977 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~~~~~ 977 (1472)
+.+|+|+||++++|+++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 469999999999999999999999999999999999876 358999999987631 2345679999999999999
Q ss_pred CCHHHHHHHHHH-cC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 978 VTIYESLLYSAW-LR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 978 lTv~e~l~~~~~-l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
+|+.||+.+... .+ ...+ ..++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 91 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~ 165 (213)
T cd03262 91 LTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSA 165 (213)
T ss_pred CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 999999987542 22 1211 34567788888876655543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 166 LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 166 LDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999877899999999976 46678999999986 44
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=333.05 Aligned_cols=211 Identities=22% Similarity=0.260 Sum_probs=173.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRF-------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 36677776654 23579999999999999999999999999999999999876 4589999999875
Q ss_pred Ch---hc-ccceeEEeccCCCCCCCCCHHHHHHHHHHcCC---------------Cc----hHHHHHHHHHccccccccc
Q 045902 957 KQ---ET-FARISGYCEQNDIHSPNVTIYESLLYSAWLRL---------------PK----DMFVEEVMELVEMKALRNS 1013 (1472)
Q Consensus 957 ~~---~~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~---------------~~----~~~~~~v~~~l~l~~~~~~ 1013 (1472)
.. .. .+..++|++|++.+++.+||.||+.+...... .. ...++++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 42 11 23358999999999999999999987532110 00 1245666777877665555
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCe
Q 045902 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1092 (1472)
Q Consensus 1014 ~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~ 1092 (1472)
.. ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 43 479999999999999999999999999999999999999999999999875 899999999976 56788999
Q ss_pred EEEEecCcEEEEEcCCC
Q 045902 1093 LFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1093 v~~l~~gg~v~~~g~~~ 1109 (1472)
+++|++ |++++.|+.+
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 7898888753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=339.09 Aligned_cols=215 Identities=22% Similarity=0.315 Sum_probs=173.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++.. ......+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 5677877765310 00113599999999999999999999999999999999998774 4799999986531
Q ss_pred ---------------------------hhcccceeEEeccCC-CCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHc
Q 045902 958 ---------------------------QETFARISGYCEQND-IHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELV 1005 (1472)
Q Consensus 958 ---------------------------~~~~~~~~gyv~Q~~-~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l 1005 (1472)
....++.+||++|++ ..+...||+|++.|..... .+.+ ..++++++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc
Confidence 123456799999985 3344579999998865432 2222 3467778888
Q ss_pred ccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccH
Q 045902 1006 EMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1084 (1472)
Q Consensus 1006 ~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~ 1084 (1472)
++. ++.++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++
T Consensus 153 gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 885 455544 3479999999999999999999999999999999999999999999999877999999999976
Q ss_pred HHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1085 DIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1085 ~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
++.+.+|++++|++ |++++.|+..
T Consensus 227 ~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 227 NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 47788999999985 7899998853
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=333.44 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=172.6
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (257)
T PRK10619 6 LNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTIN 70 (257)
T ss_pred EEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcc
Confidence 56777766542 3569999999999999999999999999999999999876 35899999998653
Q ss_pred h----------------hcccceeEEeccCCCCCCCCCHHHHHHHHHH-cC-CCc---hHHHHHHHHHccccccc-cccc
Q 045902 958 Q----------------ETFARISGYCEQNDIHSPNVTIYESLLYSAW-LR-LPK---DMFVEEVMELVEMKALR-NSLV 1015 (1472)
Q Consensus 958 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-l~-~~~---~~~~~~v~~~l~l~~~~-~~~~ 1015 (1472)
. ..+++.++|++|++.+++.+|++||+.+... .. ... ...++++++.+++.+.. +..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~- 149 (257)
T PRK10619 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY- 149 (257)
T ss_pred cccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC-
Confidence 1 2345678999999999999999999987432 21 121 13456777888776542 332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE
Q 045902 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1016 ~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++
T Consensus 150 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~ 224 (257)
T PRK10619 150 ----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIF 224 (257)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 3579999999999999999999999999999999999999999999999877999999999976 46668999999
Q ss_pred EecCcEEEEEcCC
Q 045902 1096 MKRGGHVIYAGPL 1108 (1472)
Q Consensus 1096 l~~gg~v~~~g~~ 1108 (1472)
|++ |++++.|+.
T Consensus 225 l~~-G~i~~~~~~ 236 (257)
T PRK10619 225 LHQ-GKIEEEGAP 236 (257)
T ss_pred EEC-CEEEEeCCH
Confidence 986 788888874
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=336.46 Aligned_cols=212 Identities=27% Similarity=0.412 Sum_probs=175.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+. +++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 467888877652 12469999999999999999999999999999999999876 4589999999876
Q ss_pred C-----hhcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 957 K-----QETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~-----~~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
. ...+++.+||++|++. .+...|++|++.+..... .+.. ..++++++.+++.+..++.. ..||||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 145 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFG 145 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHH
Confidence 3 1235567999999974 334679999998764432 2222 34677888888887766553 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~~~ 223 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVILQ 223 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999875 899999999976 36678999999986 789999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 224 g~~~ 227 (283)
T PRK13636 224 GNPK 227 (283)
T ss_pred CCHH
Confidence 9863
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=338.74 Aligned_cols=209 Identities=22% Similarity=0.278 Sum_probs=172.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCC--
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHD-- 256 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d-- 256 (1472)
...+|+|||+.|++||+++|+|+||||||||+++|+|.++++ +|+|.++|+++.+... ++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 357999999999999999999999999999999999999887 8999999999876532 35799999997
Q ss_pred CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccc
Q 045902 257 LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADI 335 (1472)
Q Consensus 257 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 335 (1472)
.++|.+||.||+.+..+....+ ..+.+ . ...++.+++.+||. ...++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~~~~----------~--------------~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LSRQE----------V--------------KDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CCHHH----------H--------------HHHHHHHHHHcCCChHHhcC
Confidence 5888999999998764321100 00000 0 01134578889994 34555
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.+ ..|||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+..+.|+|++.|+ ...+.+++|+
T Consensus 158 ~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd-l~~~~~~~dr 231 (331)
T PRK15079 158 YP-----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD-LAVVKHISDR 231 (331)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCE
Confidence 44 45999999999999999999999999999999999999999999999987668888887765 4577789999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999988774
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.88 Aligned_cols=197 Identities=27% Similarity=0.357 Sum_probs=164.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCccCCh-----hcccceeEEeccCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGYPKKQ-----ETFARISGYCEQNDIH 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~~ 974 (1472)
..+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+... ...++.++|++|++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 46999999999999999999999999999999999987632 128999999987642 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHcccc----cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCcc
Q 045902 975 SPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMK----ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1045 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~----~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~ 1045 (1472)
++ .|+.||+.+....+. +.+ ..++++++.+++. +..+.. +..||||||||++||++|+.+|++|+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 167 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLL 167 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88 999999988654432 111 3456677777776 333332 35799999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1046 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1046 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 168 LDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999976 489999999976 46788999999986 788888875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=336.57 Aligned_cols=214 Identities=27% Similarity=0.403 Sum_probs=172.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++.. ....+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 4577777765310 0011359999999999999999999999999999999999876 45899999998863
Q ss_pred h-------hcccceeEEeccCC--CCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccc-cccccccCCCCCCCC
Q 045902 958 Q-------ETFARISGYCEQND--IHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 958 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~L 1023 (1472)
. ..+++.+||++|++ .++ ..||.|++.|..... .+.. ..++++++.+++. ++.++. +..|
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~L 145 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS-----PFEL 145 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC-----cccC
Confidence 1 23466799999986 344 469999999875432 2222 3466778888874 344433 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++
T Consensus 146 SgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~ 223 (288)
T PRK13643 146 SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHII 223 (288)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999976 46688999999985 7999
Q ss_pred EEcCCC
Q 045902 1104 YAGPLG 1109 (1472)
Q Consensus 1104 ~~g~~~ 1109 (1472)
+.|+..
T Consensus 224 ~~g~~~ 229 (288)
T PRK13643 224 SCGTPS 229 (288)
T ss_pred EECCHH
Confidence 999863
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=326.52 Aligned_cols=204 Identities=23% Similarity=0.356 Sum_probs=171.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999887 8999999998765432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.+.....+.. .. +. ...++.+++.+||++..++.+.
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~--- 132 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------KK----------ER--------------EEKLEELLEEFHITHLRKSKAS--- 132 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------HH----------HH--------------HHHHHHHHHHcCChhhhhCChh---
Confidence 99999998753221110 00 00 0123567888999887776665
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++
T Consensus 133 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~ 208 (232)
T cd03218 133 --SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYE 208 (232)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999876 5788888877654 78899999999999
Q ss_pred CeEEEecChhHH
Q 045902 422 GEIVYQGPREYV 433 (1472)
Q Consensus 422 G~iv~~G~~~~~ 433 (1472)
|++++.|+.+++
T Consensus 209 G~i~~~~~~~~~ 220 (232)
T cd03218 209 GKVLAEGTPEEI 220 (232)
T ss_pred CeEEEEeCHHHh
Confidence 999999998765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=340.28 Aligned_cols=214 Identities=23% Similarity=0.342 Sum_probs=173.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++.. ......+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 57888888776311 0012469999999999999999999999999999999999877 4589999999775
Q ss_pred Ch-------------------hcccceeEEeccCC--CCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccc-cc
Q 045902 957 KQ-------------------ETFARISGYCEQND--IHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMK-AL 1010 (1472)
Q Consensus 957 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~-~~ 1010 (1472)
.. ...++.+|||+|++ .+++ .||+||+.|..... .+.+ ..++++++.+++. ++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhH
Confidence 32 23467799999986 3454 59999998865322 2222 3456777888775 44
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhh
Q 045902 1011 RNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1090 (1472)
Q Consensus 1011 ~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~ 1090 (1472)
.++. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+
T Consensus 170 ~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~a 243 (320)
T PRK13631 170 LERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVA 243 (320)
T ss_pred hcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhC
Confidence 4433 3579999999999999999999999999999999999999999999999877999999999976 466889
Q ss_pred CeEEEEecCcEEEEEcCC
Q 045902 1091 DELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1091 D~v~~l~~gg~v~~~g~~ 1108 (1472)
|++++|++ |+++..|+.
T Consensus 244 dri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 244 DEVIVMDK-GKILKTGTP 260 (320)
T ss_pred CEEEEEEC-CEEEEeCCH
Confidence 99999985 789999975
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=317.60 Aligned_cols=180 Identities=45% Similarity=0.763 Sum_probs=156.7
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD---KSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLH 258 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~---~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~ 258 (1472)
.++.+|+|+|+.+++||+++|+||||||||||+++|+|.++ ++ +|+|.++|+++.... .++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 34579999999999999999999999999999999999988 55 899999999876542 24579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.++.+.. .+
T Consensus 95 ~~~~tv~~~l~~~~~~~---------------------------------------------------------~~---- 113 (202)
T cd03233 95 FPTLTVRETLDFALRCK---------------------------------------------------------GN---- 113 (202)
T ss_pred CCCCcHHHHHhhhhhhc---------------------------------------------------------cc----
Confidence 99999999997743210 11
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
.....||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.||+.+++.+++|++++
T Consensus 114 -~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 114 -EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred -cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 2234599999999999999999999999999999999999999999999997655678888888887889999999999
Q ss_pred ecCCeEEEec
Q 045902 419 LSEGEIVYQG 428 (1472)
Q Consensus 419 L~~G~iv~~G 428 (1472)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=372.53 Aligned_cols=212 Identities=28% Similarity=0.465 Sum_probs=178.3
Q ss_pred cceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcC
Q 045902 874 QPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG 953 (1472)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G 953 (1472)
-+..+.++|++|.+.. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|+.+ +.+|+|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC
Confidence 3457899999998742 23469999999999999999999999999999999999988 4599999999
Q ss_pred ccCC---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCC---------CCC
Q 045902 954 YPKK---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLP---------GVD 1021 (1472)
Q Consensus 954 ~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~---------~~~ 1021 (1472)
+++. ...+|+.+|||+|++.++. -|++||+.++. ++...|++++.+.+.++.+.+...| +..
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 9864 4678899999999998875 59999998643 2223456666666665554443222 345
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1022 ~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.++. +|+|+|+++|+++ ..+.+|++++|++ |+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~-Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQ-GK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccC-Cc
Confidence 899999999999999999999999999999999999999999999985 4799999999975 7889999999985 89
Q ss_pred EEEEcCC
Q 045902 1102 VIYAGPL 1108 (1472)
Q Consensus 1102 v~~~g~~ 1108 (1472)
++..|+.
T Consensus 685 iv~~gs~ 691 (709)
T COG2274 685 IVEQGSH 691 (709)
T ss_pred eeccCCH
Confidence 9999985
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.34 Aligned_cols=198 Identities=28% Similarity=0.412 Sum_probs=166.9
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+.+|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 569999999999999999999999999999999999876 458999999987532 234467899999988888899
Q ss_pred HHHHHHHHHHcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh------hCCCCccccCC
Q 045902 980 IYESLLYSAWLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV------ANPSIIFMDEP 1049 (1472)
Q Consensus 980 v~e~l~~~~~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~------~~p~il~LDEP 1049 (1472)
|+|++.+..... ... +..++++++.+++.+..++.+ ..||||||||++||++|+ .+|++|+||||
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEP 167 (258)
T PRK13548 93 VEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEP 167 (258)
T ss_pred HHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCC
Confidence 999998754322 111 234677888888876666553 479999999999999999 59999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1050 TSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1050 TsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|+|||+.++..+.+.|++++ ++|+|||++||+++ ++.+.+|++++|.+ |+++..|+..
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (258)
T PRK13548 168 TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA 226 (258)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence 99999999999999999997 66899999999976 46678999999985 7888888753
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=339.17 Aligned_cols=205 Identities=27% Similarity=0.430 Sum_probs=175.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999876532 1357999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|.||+.|.++..+... .+ . ....+.+++.+||++..|+.+++
T Consensus 92 v~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~gl~~~~~~~~~~---- 133 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------QL----------L--------------KQRVEEMIELVGLRPEQHKKIGQ---- 133 (301)
T ss_pred HHHHHHHHHHHcCCCH----------HH----------H--------------HHHHHHHHHHCCCchHhcCchhh----
Confidence 9999988655432110 00 0 00135678999999988877765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+||+++|++|+|||||+|||+.++.++.+.|+++++ +.|++++.|++ .++.+++|+|++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 134 -LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGK 209 (301)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999853 58888887665 47889999999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=316.83 Aligned_cols=189 Identities=58% Similarity=0.951 Sum_probs=159.5
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 4 LTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD 74 (192)
T ss_pred EEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH
Confidence 5677776665210 0124699999999999999999999999999999999997532246899999998765
Q ss_pred hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 045902 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVEL 1037 (1472)
Q Consensus 958 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL 1037 (1472)
..+++.++|++|++.+++.+|++||+.+...++ .||||||||++||+||
T Consensus 75 -~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 75 -KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------------------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred -HHhhhceEEecccCccccCCcHHHHHHHHHHHh------------------------------cCCHHHhHHHHHHHHH
Confidence 344567899999998999999999998743210 4999999999999999
Q ss_pred hhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1038 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1038 ~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++.++.+.+|++++|+++|++++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999987799999999998644678899999998647888765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.97 Aligned_cols=213 Identities=28% Similarity=0.389 Sum_probs=172.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999887 8999999998765431 35799999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.+....... ... .. .+..++.. ...++.+++.+||++..++.++
T Consensus 91 ~~~tv~~~l~~~~~~~~~--~~~---~~------~~~~~~~~---------------~~~~~~~l~~~~l~~~~~~~~~- 143 (241)
T cd03256 91 ERLSVLENVLSGRLGRRS--TWR---SL------FGLFPKEE---------------KQRALAALERVGLLDKAYQRAD- 143 (241)
T ss_pred ccCcHHHHHHhhhcccch--hhh---hh------cccCcHHH---------------HHHHHHHHHHcCChhhhCCCcc-
Confidence 999999999875321100 000 00 00000000 0113457888999877776554
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++. ++.+++|++++|
T Consensus 144 ----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l 218 (241)
T cd03256 144 ----QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGL 218 (241)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 599999999999999999999999999999999999999999999997656788888887654 677899999999
Q ss_pred cCCeEEEecChhHH
Q 045902 420 SEGEIVYQGPREYV 433 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~ 433 (1472)
++|++++.|+.+++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (241)
T cd03256 219 KDGRIVFDGPPAEL 232 (241)
T ss_pred ECCEEEeecCHHHh
Confidence 99999999998775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=322.53 Aligned_cols=198 Identities=30% Similarity=0.447 Sum_probs=166.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCCH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 264 (1472)
++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999887 899999999876421 13579999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.+.....+.. ..+ . ...++.+++.+||++..++.+++
T Consensus 96 ~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------GDE----------L--------------TARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 99998754322110 000 0 01235578889998877776654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ .++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 478988888765 477889999999999999
Q ss_pred EEec
Q 045902 425 VYQG 428 (1472)
Q Consensus 425 v~~G 428 (1472)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.18 Aligned_cols=191 Identities=26% Similarity=0.385 Sum_probs=159.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hc---cc-ceeEEeccCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ET---FA-RISGYCEQNDIHS 975 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~---~~-~~~gyv~Q~~~~~ 975 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... .. ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 469999999999999999999999999999999999876 458999999987532 11 22 5689999999888
Q ss_pred CCCCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 976 PNVTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
+.+|++|++.+....+. +. ...+.++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||+
T Consensus 96 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~ 170 (221)
T TIGR02211 96 PDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTG 170 (221)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 89999999988654332 21 134567788888876655543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1052 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||+.++..+.+.|++++++ |+|||++||+++ ..+.+|++++|++ |+++
T Consensus 171 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--~~~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 171 NLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE--LAKKLDRVLEMKD-GQLF 220 (221)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEEEeC-CEec
Confidence 99999999999999999764 899999999976 3356899999986 5654
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=336.16 Aligned_cols=197 Identities=24% Similarity=0.318 Sum_probs=165.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hcccceeEEeccCCC-C
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETFARISGYCEQNDI-H 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~~~~~gyv~Q~~~-~ 974 (1472)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 469999999999999999999999999999999999877 458999999987532 234567899999963 3
Q ss_pred CCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC
Q 045902 975 SPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1049 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP 1049 (1472)
+..+||.|++.+...... ..+ ..++++++.+++. ...++.. ..||||||||++||++|+.+|++|+||||
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEP 172 (287)
T PRK13641 98 LFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEP 172 (287)
T ss_pred hccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 335899999987654321 111 3467788888885 4555543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1050 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1050 TsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 173 t~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 229 (287)
T PRK13641 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASP 229 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999877999999999976 47788999999985 789888875
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=324.03 Aligned_cols=203 Identities=26% Similarity=0.398 Sum_probs=167.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 36999999999999999999999999999999999999987 8999999998765432 3569999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh-CCcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL-GLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~ 340 (1472)
+||+||+.+....... . + .. ...+.+++.+ ++++..|+.+.
T Consensus 90 ~t~~~~l~~~~~~~~~---~----~--~~---------------------------~~~~~~l~~~~~l~~~~~~~~~-- 131 (222)
T cd03224 90 LTVEENLLLGAYARRR---A----K--RK---------------------------ARLERVYELFPRLKERRKQLAG-- 131 (222)
T ss_pred CcHHHHHHHHhhhcCc---h----h--HH---------------------------HHHHHHHHHHHhhhhhhhCchh--
Confidence 9999999886432110 0 0 00 0123345556 46655665554
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|+
T Consensus 132 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 206 (222)
T cd03224 132 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLE 206 (222)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEee
Confidence 4999999999999999999999999999999999999999999999876 578888887765 46778999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=372.40 Aligned_cols=211 Identities=26% Similarity=0.389 Sum_probs=182.5
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCC
Q 045902 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHH 259 (1472)
Q Consensus 183 ~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 259 (1472)
+...+||+|+|+.+++|+.+||+|||||||||.+.+|-..++|. +|.|.+||+++++++. |+++|.|+|+|.+|
T Consensus 1000 RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF 1076 (1228)
T KOG0055|consen 1000 RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF 1076 (1228)
T ss_pred CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhh
Confidence 34568999999999999999999999999999999999999998 9999999999998875 47899999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
. .|+||||.|+... . +..++.++.|++.++++ +.+|++..||.||
T Consensus 1077 ~-~TIrENI~YG~~~--v--------------------s~~eIi~Aak~ANaH~F-----------I~sLP~GyDT~vG- 1121 (1228)
T KOG0055|consen 1077 N-GTIRENIAYGSEE--V--------------------SEEEIIEAAKLANAHNF-----------ISSLPQGYDTRVG- 1121 (1228)
T ss_pred c-ccHHHHHhccCCC--C--------------------CHHHHHHHHHHhhhHHH-----------HhcCcCcccCccC-
Confidence 6 5999999997210 0 12344455555554433 3578999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
+++..||||||||++||||+++||+||||||.||+||+.+.+.+.++|.+.. .|+|.|+.-|.. .+.+.+|.|+|+
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRL--STIqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRL--STIQNADVIAVL 1197 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecch--hhhhcCCEEEEE
Confidence 5777899999999999999999999999999999999999999999999976 467777777765 588999999999
Q ss_pred cCCeEEEecChhHHHH
Q 045902 420 SEGEIVYQGPREYVLD 435 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~~ 435 (1472)
++|+|+++|++++++.
T Consensus 1198 ~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1198 KNGKVVEQGTHDELLA 1213 (1228)
T ss_pred ECCEEEecccHHHHHh
Confidence 9999999999999975
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=345.36 Aligned_cols=206 Identities=22% Similarity=0.292 Sum_probs=175.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 45899999999999999999999999999999999999987 8999999999875432 2479999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.|..+..+... .+. ...++.+++.+||++..++.+.
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------~~~------------------------~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------EER------------------------REKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------HHH------------------------HHHHHHHHHHcCCChhhhcCcc
Confidence 999999999998754332110 000 0013557889999887776665
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|++.|++ .++.+++|+|++
T Consensus 164 -----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~v 237 (400)
T PRK10070 164 -----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAI 237 (400)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEE
Confidence 49999999999999999999999999999999999999999999998765688988887765 477889999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999988764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=327.67 Aligned_cols=209 Identities=26% Similarity=0.378 Sum_probs=172.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFY-------------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEE-------------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 5566766544 23469999999999999999999999999999999999876 45899999998642
Q ss_pred ---------hhcccceeEEeccCCCCCCCCCHHHHHHHH-HHcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCC
Q 045902 958 ---------QETFARISGYCEQNDIHSPNVTIYESLLYS-AWLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 958 ---------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~-~~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~L 1023 (1472)
....++.++|++|++.+++.+|+.||+.+. .... ... ...++++++.+++.+..+... ..|
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 142 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----LHL 142 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 122356789999999999999999999642 2222 121 134567778888876666543 479
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |+++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~ 220 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIV 220 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999976 46678999999985 7888
Q ss_pred EEcCC
Q 045902 1104 YAGPL 1108 (1472)
Q Consensus 1104 ~~g~~ 1108 (1472)
+.|+.
T Consensus 221 ~~~~~ 225 (242)
T PRK11124 221 EQGDA 225 (242)
T ss_pred EeCCH
Confidence 88875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=322.27 Aligned_cols=201 Identities=25% Similarity=0.333 Sum_probs=163.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC------CCceEEEEcCCC--CC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV------PQRTCAYISQHD--LH 258 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 258 (1472)
++|+|+|+++++||+++|+|||||||||||++|+|.++++ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 899999999886543 135799999998 46
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMV 337 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 337 (1472)
++.+||+||+.+.....+.... .+ ..+ ...+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~---------~~---------~~~--------------~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK---------KE---------ARK--------------EAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH---------HH---------HHH--------------HHHHHHHHHCCCChhHhhCCc
Confidence 6789999999875432211000 00 000 0013467788885 4556555
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
+ .|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|+++
T Consensus 144 ~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 217 (228)
T cd03257 144 H-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVA 217 (228)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEE
Confidence 4 499999999999999999999999999999999999999999999998755789998887764 6677999999
Q ss_pred EecCCeEEEec
Q 045902 418 LLSEGEIVYQG 428 (1472)
Q Consensus 418 lL~~G~iv~~G 428 (1472)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.46 Aligned_cols=190 Identities=25% Similarity=0.345 Sum_probs=160.4
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHHHHH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYESLLY 986 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 986 (1472)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 458999999987643 1234678999999999999999999987
Q ss_pred HHHcCCC----chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 987 SAWLRLP----KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 987 ~~~l~~~----~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
....+.. .+..++++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||+|||+.++..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~ 168 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 5432211 1235677888888877666543 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1063 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1063 ~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 169 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 169 DLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999754 899999999976 46678999999985 6776543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=328.97 Aligned_cols=213 Identities=25% Similarity=0.360 Sum_probs=171.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999887 8999999998765321 35699999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.++...... ... .. .+..+..+ ...++.+++.+||++..|..+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~--~~~---~~------~~~~~~~~---------------~~~~~~~l~~~~l~~~~~~~~~- 144 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKP--TWR---SL------LGRFSEED---------------KERALSALERVGLADKAYQRAD- 144 (243)
T ss_pred ccccHHHHHhhccccccc--chh---hh------hccccHHH---------------HHHHHHHHHHcCcHhhhcCCcc-
Confidence 999999999875321100 000 00 00000000 0113457888999877776554
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|
T Consensus 145 ----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l 219 (243)
T TIGR02315 145 ----QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGL 219 (243)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 599999999999999999999999999999999999999999999987655788888877654 677899999999
Q ss_pred cCCeEEEecChhHH
Q 045902 420 SEGEIVYQGPREYV 433 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~ 433 (1472)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=327.92 Aligned_cols=196 Identities=26% Similarity=0.369 Sum_probs=165.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---h-cccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---E-TFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~-~~~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... . ..++.++|++|++.+++.+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 469999999999999999999999999999999999876 358999999987532 1 1234699999999999999
Q ss_pred CHHHHHHHHHHcC---------CC---chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccc
Q 045902 979 TIYESLLYSAWLR---------LP---KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1046 (1472)
Q Consensus 979 Tv~e~l~~~~~l~---------~~---~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~L 1046 (1472)
||+||+.+..... .. ....++++++.+++.+..+..+ ..||||||||++||+||+.+|++|+|
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999998754311 01 1235677888888876655543 47999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1047 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1047 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~ 226 (242)
T TIGR03411 168 DEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL 226 (242)
T ss_pred cCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence 999999999999999999999976 799999999976 46678999999985 788888875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=335.64 Aligned_cols=213 Identities=22% Similarity=0.345 Sum_probs=171.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++.. ....+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 5677777665310 0012469999999999999999999999999999999999877 45899999998763
Q ss_pred h-------hcccceeEEeccCC--CCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccc-cccccccCCCCCCCC
Q 045902 958 Q-------ETFARISGYCEQND--IHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 958 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~L 1023 (1472)
. ..+++.+|||+|++ .+++ .||.||+.|..... .+.+ ..++++++.+|+. +..++. +..|
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~L 146 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PFQM 146 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccC
Confidence 2 23566799999986 3444 59999998865432 2222 3456777888875 454543 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ |++
T Consensus 147 SgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i 224 (286)
T PRK13646 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-GSI 224 (286)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999976 4899999999976 46788999999985 789
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
++.|+.
T Consensus 225 ~~~g~~ 230 (286)
T PRK13646 225 VSQTSP 230 (286)
T ss_pred EEECCH
Confidence 988875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=334.34 Aligned_cols=212 Identities=24% Similarity=0.327 Sum_probs=175.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++. ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3667787776521 012359999999999999999999999999999999999876 4589999999886
Q ss_pred Ch---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 957 KQ---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. ...++.+||++|++. .++..||+||+.|..... .+. ...++++++.+++.+..+... ..||||||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 146 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQK 146 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHH
Confidence 42 234567999999973 667889999998865432 222 135678888888887666553 47999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..+|++++|.+ |+++..|+
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~-G~i~~~g~ 223 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKN-GQVESTST 223 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEECC
Confidence 9999999999999999999999999999999999999999875 9999999999763 4 67999999985 78998887
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 224 ~ 224 (279)
T PRK13650 224 P 224 (279)
T ss_pred H
Confidence 5
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=323.96 Aligned_cols=203 Identities=28% Similarity=0.408 Sum_probs=170.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999887 899999999875421 2356999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.+..+..+... .+ . ....+.+++.+||++..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------SE----------I--------------KEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------HH----------H--------------HHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999987644322100 00 0 00134578889998877776654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++.+++|++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999865 478888877654 6778999999999999
Q ss_pred EEEecChhHH
Q 045902 424 IVYQGPREYV 433 (1472)
Q Consensus 424 iv~~G~~~~~ 433 (1472)
+++.|+.+++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.63 Aligned_cols=208 Identities=27% Similarity=0.365 Sum_probs=171.3
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 68 (241)
T PRK14250 4 IEFKEVSYSS-------------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIK 68 (241)
T ss_pred EEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5677776654 23469999999999999999999999999999999999876 45899999998753
Q ss_pred h---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHH
Q 045902 958 Q---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTI 1033 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~i 1033 (1472)
. ...++.++|++|++.+++ .|++||+.+....+......++++++.+++. ++.++. +..||||||||++|
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~l 142 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSI 142 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHH
Confidence 2 234567899999988776 6999999875433222234567788888885 444443 34799999999999
Q ss_pred HHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1034 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1034 A~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (241)
T PRK14250 143 ARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKT 216 (241)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999999999999999999999999764 899999999976 46778999999985 788888875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=335.39 Aligned_cols=213 Identities=20% Similarity=0.233 Sum_probs=172.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCC--
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHD-- 256 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d-- 256 (1472)
..+|+|||++|++||+++|+|+||||||||+++|+|.++++...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742238999999999876532 14799999997
Q ss_pred CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccc
Q 045902 257 LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIM 336 (1472)
Q Consensus 257 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 336 (1472)
.+.|.+||.+++.+....... ....+ . ...+..+++.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~~~~~----------~--------------~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------MSKAE----------A--------------FEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CCHHH----------H--------------HHHHHHHHHHcCCCChHHH-
Confidence 688999999999765332110 00000 0 0013456788888753322
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
. +.++..|||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+..+.|+|++.|+. ..+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEE
Confidence 2 3566779999999999999999999999999999999999999999999999876688888877665 4777899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+.+++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998875
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.61 Aligned_cols=206 Identities=27% Similarity=0.394 Sum_probs=171.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999887 8999999998765432 35799999999999999
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc--cccccccCc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI--CADIMVGNE 340 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~--~~dt~vg~~ 340 (1472)
||+||+.+..+..+.. .. +. ...++.+++.+||++ ..++.+
T Consensus 91 tv~e~l~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~l~l~~~~~~~~~~--- 133 (242)
T cd03295 91 TVEENIALVPKLLKWP----------KE----------KI--------------RERADELLALVGLDPAEFADRYP--- 133 (242)
T ss_pred cHHHHHHHHHHHcCCC----------HH----------HH--------------HHHHHHHHHHcCCCcHHHHhcCh---
Confidence 9999998754322110 00 00 001345788889985 555554
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++. ++.+++|+|++|+
T Consensus 134 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~ 210 (242)
T cd03295 134 --HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK 210 (242)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 4599999999999999999999999999999999999999999999997755788888887764 6778999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987663
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=327.30 Aligned_cols=200 Identities=23% Similarity=0.278 Sum_probs=162.2
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcc-cceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETF-ARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~-~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+... ... +..++|++|++.+++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 56999999999999999999999999999999999984211458999999987542 122 23489999999999999
Q ss_pred CHHHHHHHHHHcCC--------Cc---hHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccc
Q 045902 979 TIYESLLYSAWLRL--------PK---DMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1046 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~--------~~---~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~L 1046 (1472)
|++|++.+...... .. .+.++++++.+++. .+.+.... ..||||||||++||++|+.+|++|+|
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999987543211 11 13456677777775 34443321 24999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHh-hCeEEEEecCcEEEEEcCC
Q 045902 1047 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1047 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~-~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |++++.|+.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 9999999999999999999999877899999999976 35555 799999985 788888875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.49 Aligned_cols=197 Identities=23% Similarity=0.332 Sum_probs=166.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----------------hcccceeE
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----------------ETFARISG 966 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----------------~~~~~~~g 966 (1472)
+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 469999999999999999999999999999999999876 358999999987531 13456799
Q ss_pred EeccCCCCCCCCCHHHHHHHHHHc-C-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 045902 967 YCEQNDIHSPNVTIYESLLYSAWL-R-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP 1041 (1472)
Q Consensus 967 yv~Q~~~~~~~lTv~e~l~~~~~l-~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p 1041 (1472)
|++|++.+++..|+.||+.+.... + .... ..++++++.+++.+..+.. +..||||||||++||++|+.+|
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p 165 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAMRP 165 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999875321 1 1111 3456778888887665544 3479999999999999999999
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1042 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1042 ~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 166 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 166 KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999765 899999999976 46678999999985 789888875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=328.93 Aligned_cols=214 Identities=27% Similarity=0.327 Sum_probs=170.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G 953 (1472)
.+.++|+++.+ +++.+|+|+|++|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 57778877654 2346999999999999999999999999999999999986531 3589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLS 1024 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LS 1024 (1472)
.++.. ..+++.++|++|++.+++ +|++||+.+....+ .+.+ ..++++++.+++.+....... ..+..||
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS 156 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLK-SPALSLS 156 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhc-CChhhCC
Confidence 87532 234567999999988887 89999998865432 2221 235667777776421111111 1235799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ ++.+.+|++++|.+ |++++
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~ 233 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GELIE 233 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999964 799999999976 46678999999985 78998
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|+.
T Consensus 234 ~~~~ 237 (258)
T PRK14268 234 FGQT 237 (258)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=330.15 Aligned_cols=207 Identities=21% Similarity=0.339 Sum_probs=172.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35899999999999999999999999999999999999887 8999999998764321 35699999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||.||+.+....... ....+ . ...++.+++.+||++..++.+++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~~----------~--------------~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAPL----------L--------------HSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHHH----------H--------------HHHHHHHHHHcCChhhhhCChhh
Confidence 999999999875321100 00000 0 00134578899999888877654
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|
T Consensus 144 -----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l 217 (269)
T PRK11831 144 -----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIV 217 (269)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEE
Confidence 9999999999999999999999999999999999999999999998765578888887764 4778899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+.+++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=301.40 Aligned_cols=207 Identities=29% Similarity=0.408 Sum_probs=168.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC---ceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ---RTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 262 (1472)
+.+|++||+.++||||++|+||||||||||||+|+|.+.|+ +|++++||++++.+.+. +.-+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 46899999999999999999999999999999999999998 89999999999988663 5678999998887788
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+|-+.++..-.+.+.. |.++. ...+..|..-++.+.+..- .
T Consensus 91 tv~eVV~mGr~p~~~g~~-----------------~~e~~---------------~i~~~ala~~d~~~la~R~-----y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE-----------------PEEDE---------------RIAAQALAATDLSGLAGRD-----Y 133 (259)
T ss_pred EHHHHHHhcccccccCCC-----------------chhhH---------------HHHHHHHHHcChhhhhccc-----h
Confidence 999999998654322211 00000 0123345555555555433 2
Q ss_pred CCCChHHHHHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 343 RGISGGQKKRVTTGEMLVG------PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+.|||||||||.+||.|+. ++++||||||||.||......++++.|++++. |..|++. +|+..-...++|+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~V-LHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAV-LHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEE-EccchHHHHhhhee
Confidence 4599999999999999974 45699999999999999999999999999985 5556655 45667888999999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|.+||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999998875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=330.93 Aligned_cols=213 Identities=28% Similarity=0.395 Sum_probs=174.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCcc
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-YIEGSISISGYP 955 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~G~~ 955 (1472)
.+.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTF-------------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEe-------------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 35677776554 2356999999999999999999999999999999999987643 236999999987
Q ss_pred CCh--------hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC----------CCc--hHHHHHHHHHccccccccccc
Q 045902 956 KKQ--------ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR----------LPK--DMFVEEVMELVEMKALRNSLV 1015 (1472)
Q Consensus 956 ~~~--------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~----------~~~--~~~~~~v~~~l~l~~~~~~~~ 1015 (1472)
... ...++.++|++|++.+++.+|+.||+.+..... .+. ...++++++.+++.+..++..
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 223456899999999999999999998753210 011 235677888888876666543
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEE
Q 045902 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1094 (1472)
Q Consensus 1016 ~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~ 1094 (1472)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999764 899999999976 4678899999
Q ss_pred EEecCcEEEEEcCCC
Q 045902 1095 LMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1095 ~l~~gg~v~~~g~~~ 1109 (1472)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7888888864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=328.35 Aligned_cols=210 Identities=24% Similarity=0.304 Sum_probs=169.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 467888876542 246999999999999999999999999999999999987642 2489999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cc---hHHHHHHHHHcccc----cccccccCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PK---DMFVEEVMELVEMK----ALRNSLVGLPG 1019 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~---~~~~~~v~~~l~l~----~~~~~~~~~~~ 1019 (1472)
.++.. ...++.++|++|++..++ +||+||+.+...... .. +..++++++.+++. +..++ .
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~ 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----N 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----C
Confidence 87531 234567999999988774 899999988654321 11 13456667777663 22232 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ ++.+.+|++++|++
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~~- 224 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFLN- 224 (254)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999996 4799999999986 46788999999985
Q ss_pred cEEEEEcCC
Q 045902 1100 GHVIYAGPL 1108 (1472)
Q Consensus 1100 g~v~~~g~~ 1108 (1472)
|+++..|+.
T Consensus 225 G~i~~~g~~ 233 (254)
T PRK14273 225 GCIEEESST 233 (254)
T ss_pred CEEEEeCCH
Confidence 789888875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=374.21 Aligned_cols=205 Identities=26% Similarity=0.360 Sum_probs=170.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++++..+ ++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 46899999999999999999999999999999999999998 9999999999988764 468999999998885 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.++.. . +++++.++.+.+.+ +..++ .+++..||.+| +.+
T Consensus 542 TI~eNi~~~~~-~----------------------~~e~i~~al~~a~l---------~~~i~--~lp~G~dt~ig-e~G 586 (686)
T TIGR03797 542 SIFENIAGGAP-L----------------------TLDEAWEAARMAGL---------AEDIR--AMPMGMHTVIS-EGG 586 (686)
T ss_pred cHHHHHhcCCC-C----------------------CHHHHHHHHHHcCc---------HHHHH--hcccccccccc-CCC
Confidence 99999987532 0 01122222222111 11222 35667799998 457
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.+||||||||++||||++.+|++|+||||||+||+.++.++.+.|+++ ++|+|++.|++ ++.+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999875 46888888876 567889999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=327.54 Aligned_cols=214 Identities=23% Similarity=0.282 Sum_probs=171.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~ 954 (1472)
+.++|+++.. +++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSF-------------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEE-------------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 5566766543 2346999999999999999999999999999999999986531 35899999998
Q ss_pred cCCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC---Cch---HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 955 PKKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL---PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 955 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~---~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
++.. ..+++.+||++|++.+++.+||.||+.+....+. +.. +.++++++.+++.+..+... ...+..|||
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 149 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLSG 149 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCCH
Confidence 7632 3445679999999988899999999987643321 112 34566777777643211111 112357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |+++..
T Consensus 150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 226 (250)
T PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEW 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999864 899999999976 46788999999985 788888
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 227 g~~ 229 (250)
T PRK14247 227 GPT 229 (250)
T ss_pred CCH
Confidence 875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=320.37 Aligned_cols=196 Identities=21% Similarity=0.332 Sum_probs=163.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999887 8999999998765432 1469999999989
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.+........ ..+ . ...++.+++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VKE----------A--------------KERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HHH----------H--------------HHHHHHHHHHcCChhhhhCChh
Confidence 98999999998754321100 000 0 0013457888999877776665
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++
T Consensus 141 -----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 141 -----ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 499999999999999999999999999999999999999999999997655789999888765 44 45799999
Q ss_pred ecCCeEE
Q 045902 419 LSEGEIV 425 (1472)
Q Consensus 419 L~~G~iv 425 (1472)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=328.92 Aligned_cols=213 Identities=24% Similarity=0.297 Sum_probs=171.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~ 954 (1472)
+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 5 IETVNLRVYY-------------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred EEEEeEEEEe-------------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 5677777654 2246999999999999999999999999999999999987642 35899999998
Q ss_pred cCC-----hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC---Cch---HHHHHHHHHcccccc-cccccCCCCCCC
Q 045902 955 PKK-----QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL---PKD---MFVEEVMELVEMKAL-RNSLVGLPGVDG 1022 (1472)
Q Consensus 955 ~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~---~~~---~~~~~v~~~l~l~~~-~~~~~~~~~~~~ 1022 (1472)
++. ...+++.++|++|++.+++.+|+.||+.+....+. +.+ ..++++++.+++... .+... ..+..
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~~~ 149 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLN--DYPSN 149 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhc--cChhh
Confidence 763 12345679999999999999999999987654321 111 245667777776421 11111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|++ |++
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 226 (253)
T PRK14267 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKL 226 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999965 699999999976 46778999999985 789
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 227 ~~~~~~ 232 (253)
T PRK14267 227 IEVGPT 232 (253)
T ss_pred EEeCCH
Confidence 988875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=332.16 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=169.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-------CCceEEEEcCCC--
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-------PQRTCAYISQHD-- 256 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 256 (1472)
+++|+|||++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 899999999885421 235799999985
Q ss_pred CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccc
Q 045902 257 LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADI 335 (1472)
Q Consensus 257 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 335 (1472)
.+++ .||.||+.|+....+.. .. +.+ ..++.+++.+||+ +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~----------~~~--------------~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LD----------EVK--------------NYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HH----------HHH--------------HHHHHHHHHcCCChhhhhC
Confidence 3444 59999998864321110 00 000 0135578889996 56666
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.+. .|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++.+..+.|+|++.|++. ++.+++|+
T Consensus 142 ~~~-----~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dr 215 (286)
T PRK13646 142 SPF-----QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADE 215 (286)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 554 599999999999999999999999999999999999999999999997666889998887654 67789999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=321.09 Aligned_cols=198 Identities=26% Similarity=0.343 Sum_probs=165.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 35999999999999999999999999999999999999887 8999999988754 2346799999999999999999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.+.....+... . +. ...++.+++.+||++..++.+. .|
T Consensus 89 e~l~~~~~~~~~~~----------~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~-----~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------E----------EA--------------RRRIDEWLERLELSEYANKRVE-----EL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------H----------HH--------------HHHHHHHHHHcCChHHHhCcHh-----hC
Confidence 99987543221100 0 00 0013557888999887776665 49
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEE
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv 425 (1472)
||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ .+.|++++.|++. ++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999876 4788888877654 677889999999999998
Q ss_pred Eec
Q 045902 426 YQG 428 (1472)
Q Consensus 426 ~~G 428 (1472)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=324.15 Aligned_cols=204 Identities=23% Similarity=0.336 Sum_probs=166.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCCCceeEEEEcCeeCCCCC-----CCceEEEEcCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS-----DKSLRVSGRVTYCGHELTEFV-----PQRTCAYISQH 255 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~ 255 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ ++. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999998 776 899999999876432 13579999999
Q ss_pred CCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccc
Q 045902 256 DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADI 335 (1472)
Q Consensus 256 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 335 (1472)
+.++ .+||+||+.++.+..+... .. +. ...++.+++.+||++..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~---------~~----------~~--------------~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL---------KE----------EL--------------DERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc---------HH----------HH--------------HHHHHHHHHHcCCChHHhc
Confidence 8888 7999999988643221100 00 00 0113457888899876665
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.+. +..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .|+|++.|++ .++.+++|+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCE
Confidence 430 3469999999999999999999999999999999999999999999998763 7888877765 477789999
Q ss_pred EEEecCCeEEEecChhH
Q 045902 416 IILLSEGEIVYQGPREY 432 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~ 432 (1472)
+++|++|++++.|+.++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=341.26 Aligned_cols=208 Identities=24% Similarity=0.296 Sum_probs=175.6
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCe----eCCCCCC-------CceEEEE
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH----ELTEFVP-------QRTCAYI 252 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~yv 252 (1472)
....+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+ ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3567899999999999999999999999999999999999987 899999996 3333221 2469999
Q ss_pred cCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccc
Q 045902 253 SQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC 332 (1472)
Q Consensus 253 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 332 (1472)
+|++.++|.+||+||+.|+....+... .+. ...++.+++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~~~------------------------~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------AER------------------------RKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------HHH------------------------HHHHHHHHHHcCCchh
Confidence 999999999999999998754332110 000 0123567899999888
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc
Q 045902 333 ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL 412 (1472)
Q Consensus 333 ~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~ 412 (1472)
.|..+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++|+|++.|+. .++.++
T Consensus 158 ~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l 231 (382)
T TIGR03415 158 ADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKI 231 (382)
T ss_pred hcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 8877654 9999999999999999999999999999999999999999999999876688998887765 478899
Q ss_pred cCeEEEecCCeEEEecChhHHH
Q 045902 413 FDDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 413 fD~iilL~~G~iv~~G~~~~~~ 434 (1472)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=331.94 Aligned_cols=196 Identities=23% Similarity=0.356 Sum_probs=165.9
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCCC-CCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQNDI-HSPN 977 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~~-~~~~ 977 (1472)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 459999999999999999999999999999999999876 458999999987642 234567999999975 3667
Q ss_pred CCHHHHHHHHHHcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 978 VTIYESLLYSAWLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 978 lTv~e~l~~~~~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
.|+.||+.+..... .+. ...++++++.+++.+..+... ..||||||||++||+||+.+|+||+|||||+||
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gL 167 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSML 167 (274)
T ss_pred chHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 89999998765432 221 234667788888877666543 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+++.|++++++|+|||++||+++ ++ +.+|++++|++ |++++.|+.
T Consensus 168 D~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 219 (274)
T PRK13644 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEP 219 (274)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999877999999999976 34 67999999985 789998875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=329.92 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=167.7
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~l 978 (1472)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 3579999999999999999999999999999999999876 458999999987532 23455689999999888889
Q ss_pred CHHHHHHHHHH-----cCC-Cc--hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCC
Q 045902 979 TIYESLLYSAW-----LRL-PK--DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050 (1472)
Q Consensus 979 Tv~e~l~~~~~-----l~~-~~--~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPT 1050 (1472)
|+.|++.+... ... +. ...++++++.+++.+..++.. ..||||||||++||+||+.+|++|+|||||
T Consensus 92 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 92 TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987521 111 11 234567788888876666543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1051 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|+.+
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 999999999999999999877999999999986 57789999999985 7888888764
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=331.82 Aligned_cols=204 Identities=21% Similarity=0.240 Sum_probs=148.6
Q ss_pred ceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 875 PLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
+..+.+.++.+..+. +.-+++.+++..++.-+..+++|+||+||||+++++.|..+ +..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 445667776654321 22268999999999999999999999999999999999765 3467776654
Q ss_pred cCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH
Q 045902 955 PKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA 1034 (1472)
Q Consensus 955 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA 1034 (1472)
+++++|-.|...-+.++.|.+--.. ..++.. ...+++.+.++..++...+.-.+ +.+||||||-||++|
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~vd~~-~~~~pG--~~~ee~r~hl~~~Gl~g~la~~s-i~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAVDFM-EKSFPG--KTEEEIRRHLGSFGLSGELALQS-IASLSGGQKSRVAFA 494 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHHHHH-HHhCCC--CCHHHHHHHHHhcCCCchhhhcc-ccccCCcchhHHHHH
Confidence 4568999987655445555443322 222211 12344444444444444443333 568999999999999
Q ss_pred HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1035 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1035 ~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
.....+|.+|+|||||+.||..+-..+-+.|+.. +..||++||+.+. +-..|+++.+.++|...-..|.
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeecc
Confidence 9999999999999999999999999999999877 4679999999653 6668999999987554445554
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=326.93 Aligned_cols=215 Identities=26% Similarity=0.357 Sum_probs=170.3
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC---CCeeEEEEEEc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGYIEGSISIS 952 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~ 952 (1472)
..+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3577888876652 2469999999999999999999999999999999999742 11358999999
Q ss_pred CccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cc---hHHHHHHHHHcccccccccccCCCCCCC
Q 045902 953 GYPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PK---DMFVEEVMELVEMKALRNSLVGLPGVDG 1022 (1472)
Q Consensus 953 G~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~ 1022 (1472)
|.++.. ...++.++|++|++.+++ .||.||+.+....+. +. ...++++++.+++.+....... ..+..
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 149 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLH-ESALG 149 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCccc
Confidence 987632 234567999999988887 599999988654331 11 1345566777776432111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|.+ |++
T Consensus 150 LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i 226 (253)
T PRK14242 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GKL 226 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999954 799999999976 46688999999986 788
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 227 ~~~g~~ 232 (253)
T PRK14242 227 IEVGPT 232 (253)
T ss_pred EEeCCH
Confidence 888864
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=331.52 Aligned_cols=211 Identities=29% Similarity=0.406 Sum_probs=174.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++..+ +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRV-------------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEE-------------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 46777776554 23469999999999999999999999999999999999876 4589999999875
Q ss_pred C---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHc-C----CCc---hHHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 957 K---QETFARISGYCEQNDIHSPNVTIYESLLYSAWL-R----LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 957 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l-~----~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
. ...+++.++|++|+..+++.+|+.||+.+.... + ... +..++++++.+++.+..++.. ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 3 233456789999998888899999999875321 1 111 234667788888876555543 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999976 46788999999985 78888
Q ss_pred EcCCC
Q 045902 1105 AGPLG 1109 (1472)
Q Consensus 1105 ~g~~~ 1109 (1472)
.|+..
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 88753
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=343.24 Aligned_cols=209 Identities=25% Similarity=0.418 Sum_probs=174.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|. +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999987 8999999998876432 36799999999998999
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++..-... +.. ..... + ...++.+++.+||.+..|+.+.
T Consensus 93 tv~e~v~~~~~~~~~--~~~---~~~~~----------~---------------~~~v~~~le~vgl~~~~~~~~~---- 138 (402)
T PRK09536 93 DVRQVVEMGRTPHRS--RFD---TWTET----------D---------------RAAVERAMERTGVAQFADRPVT---- 138 (402)
T ss_pred CHHHHHHhccchhcc--ccc---CCCHH----------H---------------HHHHHHHHHHcCCchhhcCChh----
Confidence 999999885321100 000 00000 0 0124668899999888887665
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|+ .+++.+++|++++|++|
T Consensus 139 -~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~G 215 (402)
T PRK09536 139 -SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLADG 215 (402)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEECC
Confidence 4999999999999999999999999999999999999999999999986 57888888765 45788999999999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=337.19 Aligned_cols=224 Identities=22% Similarity=0.257 Sum_probs=175.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++..++................+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 467778776653211000000001235799999999999999999999999999999999998774 589999999876
Q ss_pred Ch---h---cccceeEEeccCC--CCCCCCCHHHHHHHHHHcC---CCch---HHHHHHHHHcccc-cccccccCCCCCC
Q 045902 957 KQ---E---TFARISGYCEQND--IHSPNVTIYESLLYSAWLR---LPKD---MFVEEVMELVEMK-ALRNSLVGLPGVD 1021 (1472)
Q Consensus 957 ~~---~---~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~---~~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~ 1021 (1472)
.. . .+++.++||+|++ .++|.+||.|++.+..... .+.+ ..++++++.+++. ...++. +.
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p~ 160 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-----PH 160 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCC-----cc
Confidence 42 1 2456799999997 5788999999998764432 2222 3456777777773 233332 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCc
Q 045902 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100 (1472)
Q Consensus 1022 ~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg 1100 (1472)
.|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.+ |
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~-G 238 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL-G 238 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999976 46678999999985 7
Q ss_pred EEEEEcCCC
Q 045902 1101 HVIYAGPLG 1109 (1472)
Q Consensus 1101 ~v~~~g~~~ 1109 (1472)
+++..|+..
T Consensus 239 ~ive~g~~~ 247 (331)
T PRK15079 239 HAVELGTYD 247 (331)
T ss_pred EEEEEcCHH
Confidence 999999853
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=329.20 Aligned_cols=216 Identities=26% Similarity=0.368 Sum_probs=176.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCC-CCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHD-LHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 261 (1472)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35899999999999999999999999999999999999987 9999999999865432 35799999997 36777
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.+..+..+.. .. +. ...++.+++.+||++..++.++.
T Consensus 97 ~tv~enl~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------RE----------EM--------------VERVDQALRQVGMEDFLNREPHR-- 140 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------HH----------HH--------------HHHHHHHHHHcCChhhhhCCccc--
Confidence 89999998764322110 00 00 01245678889998887777654
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++. ++. .+|++++|++
T Consensus 141 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~ 215 (279)
T PRK13635 141 ---LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998755889999888765 444 5999999999
Q ss_pred CeEEEecChhHHHH---HHHhcCCCCC
Q 045902 422 GEIVYQGPREYVLD---FFESVGFRCP 445 (1472)
Q Consensus 422 G~iv~~G~~~~~~~---~F~~~G~~cp 445 (1472)
|++++.|+.+++.. .+...|..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999887653 3444455544
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=331.87 Aligned_cols=211 Identities=23% Similarity=0.331 Sum_probs=175.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 567788776652 3469999999999999999999999999999999999876 3589999999875
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC------CCc--hHHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR------LPK--DMFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~------~~~--~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
.. ...++.++|++|++.+++..|++|++.+..... ... +..++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 234457899999999888999999997642111 111 13467788888887665554 347999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|++++|.+ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999864 899999999976 57889999999985 78888
Q ss_pred EcCCC
Q 045902 1105 AGPLG 1109 (1472)
Q Consensus 1105 ~g~~~ 1109 (1472)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 88864
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=331.44 Aligned_cols=197 Identities=26% Similarity=0.388 Sum_probs=164.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-----hcccceeEEeccCCCC-CC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-----ETFARISGYCEQNDIH-SP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~~-~~ 976 (1472)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.. +.
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 469999999999999999999999999999999999876 458999999987531 2345678999999753 34
Q ss_pred CCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
..|+.||+.+...... ... ..++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~ 166 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166 (271)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 5689999987543321 211 3356778888887766654 347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 167 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 167 LDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999877999999999976 46678999999985 788888875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=319.26 Aligned_cols=195 Identities=27% Similarity=0.398 Sum_probs=165.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-CCceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-PQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999887 999999998775421 13579999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.+.....+. . ...++.+++.+||++..++.++.
T Consensus 90 ~e~l~~~~~~~~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~~~----- 126 (208)
T cd03268 90 RENLRLLARLLGI----------R----------------------------KKRIDEVLDVVGLKDSAKKKVKG----- 126 (208)
T ss_pred HHHHHHHHHhcCC----------c----------------------------HHHHHHHHHHcCCHHHHhhhHhh-----
Confidence 9999875432110 0 00134567888998777766654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876 5788888877654 67789999999999999
Q ss_pred EEec
Q 045902 425 VYQG 428 (1472)
Q Consensus 425 v~~G 428 (1472)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=358.35 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCC---CCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-RNSLVGLPGVDGLSTEQRKRLTIAVELVANP---SIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p---~il~LDEPTsg 1052 (1472)
.+|+.|++.|...+.. -....+.++.++|..+ .+.. ...||||||||+.||++|+.+| ++++|||||+|
T Consensus 791 ~ltv~E~l~~f~~~~~--i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsG 863 (943)
T PRK00349 791 DMTVEEALEFFEAIPK--IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 863 (943)
T ss_pred cCcHHHHHHHHHhchh--hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence 3789999888654421 2234567777787653 3333 3479999999999999999999 99999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~ 1108 (1472)
||+.+...+++.|+++.++|.|||+++|+++ ..+.+|+++.|. +||++++.|+.
T Consensus 864 LD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 864 LHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999888999999999975 456899999994 57899999975
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=331.40 Aligned_cols=210 Identities=23% Similarity=0.375 Sum_probs=172.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++ ++..+|+||||++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 55677766542 12359999999999999999999999999999999999876 45899999998754
Q ss_pred h---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 958 Q---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
. ...++.+||++|++. .+...||.||+.+..... ...+ ..++++++.+++.+..++.. ..|||||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~q 144 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKK 144 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHH
Confidence 2 234567899999973 344689999998765432 2221 34677888888876666553 479999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~ 222 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTV 222 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCH
Confidence 999999999999999999999999999999999999999875 899999999976 46789999999986 789998875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=322.20 Aligned_cols=206 Identities=26% Similarity=0.383 Sum_probs=171.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC--CceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP--QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 263 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999887 8999999998764322 247999999998889999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.+.....+.. ..+ . ...++.+++.+||++..++.+++
T Consensus 91 ~~~~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gl~~~~~~~~~~---- 132 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------RAE----------A--------------RERIAALLARLGLAERADDKVRE---- 132 (236)
T ss_pred HHHHHHHHHHhcCCC----------HHH----------H--------------HHHHHHHHHHcCChhhhcCChhh----
Confidence 999998754322100 000 0 00134578889998877776654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .+|++++|++|+
T Consensus 133 -LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 133 -LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGR 209 (236)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999997655789988888765 444 599999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
+++.|+.+++..
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999877643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=329.35 Aligned_cols=203 Identities=24% Similarity=0.308 Sum_probs=169.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCC-CCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDL-HHGEM 262 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 262 (1472)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5899999999999999999999999999999999999887 8999999998865432 356999999863 45678
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.|.....+.. +. +. ...++.+++.+||.+..++.+.+
T Consensus 96 tv~e~l~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~~L~~~~~~~~~~--- 138 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD----------KD----------EV--------------ERRVEEALKAVRMWDFRDKPPYH--- 138 (274)
T ss_pred cHHHHHHhhHHHcCCC----------HH----------HH--------------HHHHHHHHHHCCCHHHhcCChhh---
Confidence 9999998754321110 00 00 00135678899998877777654
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|++++.|++ .++.+++|+|++|++|
T Consensus 139 --LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~-~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 139 --LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDV-DLAAEWADQVIVLKEG 214 (274)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 488988887764 4677899999999999
Q ss_pred eEEEecChhHH
Q 045902 423 EIVYQGPREYV 433 (1472)
Q Consensus 423 ~iv~~G~~~~~ 433 (1472)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=332.56 Aligned_cols=216 Identities=22% Similarity=0.368 Sum_probs=172.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC-------------------CCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF-------------------VPQ 246 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-------------------~~~ 246 (1472)
+++|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999987 89999999887542 113
Q ss_pred ceEEEEcCCC--CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHH
Q 045902 247 RTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVL 324 (1472)
Q Consensus 247 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 324 (1472)
+.++||+|++ .+++ .||+||+.|+....+.. .. +. ...++.++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~~----------~~--------------~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------KS----------EA--------------KKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------HH----------HH--------------HHHHHHHH
Confidence 5799999986 4554 59999998864321110 00 00 00134578
Q ss_pred HHhCCc-ccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 045902 325 KILGLD-ICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL 403 (1472)
Q Consensus 325 ~~lgL~-~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~ 403 (1472)
+.+||+ ...++.+ ..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+ .+.|+|++.|
T Consensus 161 ~~~gL~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 161 NKMGLDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred HHcCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 889996 4555444 45999999999999999999999999999999999999999999999875 5889888877
Q ss_pred cCcchHHhccCeEEEecCCeEEEecChhHHH---HHHHhcCCCCCC
Q 045902 404 QPAPETYDLFDDIILLSEGEIVYQGPREYVL---DFFESVGFRCPE 446 (1472)
Q Consensus 404 q~~~~~~~~fD~iilL~~G~iv~~G~~~~~~---~~F~~~G~~cp~ 446 (1472)
++ .++.+++|+|++|++|++++.|+++++. +.++..|..+|.
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 65 3677899999999999999999998764 234445555544
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=327.26 Aligned_cols=214 Identities=22% Similarity=0.322 Sum_probs=171.4
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~ 954 (1472)
+.++|+++.+ +++.+|+|+|++|++||++||+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 5 l~i~~v~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 5 IDVKDLNIYY-------------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred EEEeeEEEEE-------------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 5667776654 2246999999999999999999999999999999999986532 25899999998
Q ss_pred cCC-----hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHccccc-ccccccCCCCCCCC
Q 045902 955 PKK-----QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMKA-LRNSLVGLPGVDGL 1023 (1472)
Q Consensus 955 ~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~~-~~~~~~~~~~~~~L 1023 (1472)
++. ....++.++|++|+..+++.+||+||+.+....+. +.. +.++++++.+++.. +.+... ..+..|
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~~~L 149 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLD--KPGGGL 149 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhh--CCcccC
Confidence 753 12345679999999999999999999987654322 111 34566777777632 111111 123579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----c
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----R 1098 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~ 1098 (1472)
||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|. +
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~ 227 (258)
T PRK14241 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGK 227 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCC
Confidence 99999999999999999999999999999999999999999999964 689999999976 4678899999997 2
Q ss_pred CcEEEEEcCC
Q 045902 1099 GGHVIYAGPL 1108 (1472)
Q Consensus 1099 gg~v~~~g~~ 1108 (1472)
.|++++.|+.
T Consensus 228 ~g~i~~~~~~ 237 (258)
T PRK14241 228 PGRLVEIDDT 237 (258)
T ss_pred CceEEecCCH
Confidence 5899998875
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=325.47 Aligned_cols=214 Identities=22% Similarity=0.308 Sum_probs=169.5
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC---CCCeeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGYIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~G 953 (1472)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWY-------------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEE-------------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 45677776554 2346999999999999999999999999999999999962 2212489999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc----hHHHHHHHHHcccccccccccCCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK----DMFVEEVMELVEMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~----~~~~~~v~~~l~l~~~~~~~~~~~~~~~L 1023 (1472)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. .. +..++++++.+++.+..+..... .+..|
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 147 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKE-SAFAL 147 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhC-CcccC
Confidence 87642 234567999999988876 599999987654332 11 13456777777775321111111 24579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 148 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~ 224 (250)
T PRK14245 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMV 224 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999995 4799999999986 46788999999985 7899
Q ss_pred EEcCC
Q 045902 1104 YAGPL 1108 (1472)
Q Consensus 1104 ~~g~~ 1108 (1472)
+.|+.
T Consensus 225 ~~~~~ 229 (250)
T PRK14245 225 EYDDT 229 (250)
T ss_pred EECCH
Confidence 99875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=331.26 Aligned_cols=210 Identities=28% Similarity=0.370 Sum_probs=173.5
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+.. ..+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 667777765421 124599999999999999999999999999999999998774 5899999998764
Q ss_pred h---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 958 Q---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
. ...++.+||++|++. .++..||.||+.+..... .+.. ..++++++.+++.+..++.. ..|||||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~q 147 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQ 147 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHH
Confidence 3 234567999999973 667789999998765432 1222 34677788888877666553 479999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..+|++++|.+ |++++.|+.
T Consensus 148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 224 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNK-GEILEEGTP 224 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999876 8999999999763 4 46999999985 789999875
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=344.30 Aligned_cols=199 Identities=23% Similarity=0.285 Sum_probs=169.2
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hc----ccceeEEeccCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ET----FARISGYCEQNDIH 974 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~----~~~~~gyv~Q~~~~ 974 (1472)
...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. .. .++.+||++|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3468999999999999999999999999999999999877 458999999987642 11 23568999999999
Q ss_pred CCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCC
Q 045902 975 SPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPT 1050 (1472)
++.+||+||+.+....+. +.. +.++++++.+++.+..++.. ..|||||||||+|||||+.+|++|+|||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 999999999998765432 222 34567788888877666543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1051 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 99999999999999999975 4899999999976 57788999999985 7898888753
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=312.82 Aligned_cols=190 Identities=49% Similarity=0.853 Sum_probs=160.5
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC--CCCeeEEEEEEcCc
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGYIEGSISISGY 954 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~--~~~~~~G~i~i~G~ 954 (1472)
.+.++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 366777776653100 001246999999999999999999999999999999999987 5 45899999999
Q ss_pred cCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH
Q 045902 955 PKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA 1034 (1472)
Q Consensus 955 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA 1034 (1472)
+......++.++|++|++.+++.+|+.||+.+..... .||||||||++||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~------------------------------~LS~G~~qrv~la 123 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------------GLSGGERKRVSIA 123 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc------------------------------cCCHHHHHHHHHH
Confidence 8754445677999999998889999999997643110 4999999999999
Q ss_pred HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1035 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1035 ~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999877999999999986567788999999986 6777653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=333.39 Aligned_cols=213 Identities=19% Similarity=0.220 Sum_probs=170.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEEcCeeCCCCCC-------CceEEEEcCCC-
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL-RVSGRVTYCGHELTEFVP-------QRTCAYISQHD- 256 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 256 (1472)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987422 138999999999866532 13699999997
Q ss_pred -CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccc
Q 045902 257 -LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADI 335 (1472)
Q Consensus 257 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 335 (1472)
.+.|.+||.+++....+.... ..+.+. ...++.+++.+||++..+.
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------~~~~~~------------------------~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------GNKKTR------------------------RQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------CCHHHH------------------------HHHHHHHHHHCCCCChHHH
Confidence 478999999998664332100 000000 0123557888999742111
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
-+.....|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+..+.|+|++.|+. ..+.+++|+
T Consensus 147 --l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adr 223 (326)
T PRK11022 147 --LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHK 223 (326)
T ss_pred --HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCE
Confidence 12345569999999999999999999999999999999999999999999999876788888887665 467789999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=318.59 Aligned_cols=192 Identities=27% Similarity=0.331 Sum_probs=160.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCC-CCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDL-HHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999887 8999999998754323457999999974 3457899
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.+.....+ .. ...++.+++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~----------------------~~----------------~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELD----------------------AG----------------NEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcC----------------------cc----------------HHHHHHHHHHcCCchhcCCCch-----h
Confidence 999987532110 00 0013457889999887777665 4
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYE-FLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875 4788888887654 67789999999999997
Q ss_pred E
Q 045902 425 V 425 (1472)
Q Consensus 425 v 425 (1472)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=317.62 Aligned_cols=170 Identities=25% Similarity=0.326 Sum_probs=139.7
Q ss_pred ceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHH
Q 045902 909 VSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSA 988 (1472)
Q Consensus 909 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~ 988 (1472)
=.++|..||+++++||||-||||+.++|+|..++ .+|. .. .-.++|-||--.--...||++.|.-..
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhh
Confidence 3478889999999999999999999999998774 3665 11 124688899766667889999886544
Q ss_pred HcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHH
Q 045902 989 WLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068 (1472)
Q Consensus 989 ~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l 1068 (1472)
.-+........|+.+-|.|..+.++.+ .+|||||.|||+||.+|..++++.+||||++.||++.+..+-+.||+.
T Consensus 427 ~~~~~~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~ 501 (591)
T COG1245 427 RSAFGSSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRF 501 (591)
T ss_pred hhhcccchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHH
Confidence 333344467789999999999888775 479999999999999999999999999999999999999999999999
Q ss_pred hhC-CCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1069 VDT-GRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1069 ~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
... ++|.+++-||..+ +--..||+++..
T Consensus 502 ~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 502 IENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 854 7899999999653 334568888775
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=332.65 Aligned_cols=205 Identities=22% Similarity=0.328 Sum_probs=167.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC----------------------
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF---------------------- 243 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---------------------- 243 (1472)
..+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999987 89999998765210
Q ss_pred -----CCCceEEEEcCCC-CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhcccccc
Q 045902 244 -----VPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTS 317 (1472)
Q Consensus 244 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1472)
..++.++||+|++ ..+...||+||+.|+....+.. + .+.+
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~----------~~~~-------------- 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------K----------EEAK-------------- 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------H----------HHHH--------------
Confidence 1135799999985 3455679999998864432210 0 0000
Q ss_pred ccHHHHHHHhCCc-ccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 045902 318 LGTDYVLKILGLD-ICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDV 396 (1472)
Q Consensus 318 ~~~~~il~~lgL~-~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 396 (1472)
..++.+++.+||+ +..|+.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 0135578899996 56676554 4999999999999999999999999999999999999999999999975 588
Q ss_pred EEEEEEecCcchHHhccCeEEEecCCeEEEecChhHHH
Q 045902 397 TMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 397 tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~~~~~ 434 (1472)
|+|++.|+. .++.+++|+|++|++|++++.|+++++.
T Consensus 217 tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 888877664 4678899999999999999999998864
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=318.19 Aligned_cols=194 Identities=23% Similarity=0.307 Sum_probs=163.9
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999877 358999999987642 2345679999999999999999999
Q ss_pred HHHHHHcCC--C--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 984 LLYSAWLRL--P--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 984 l~~~~~l~~--~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
+.+...... + .+..++++++.+++.+..++.. ..||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 165 (213)
T TIGR01277 91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLRE 165 (213)
T ss_pred HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 986533211 1 1235677888888876666543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1060 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1060 ~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
.+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+
T Consensus 166 ~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 166 EMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999764 899999999976 46678999999985 78887764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=364.15 Aligned_cols=209 Identities=28% Similarity=0.425 Sum_probs=174.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 261 (1472)
++++|+|+|+.++|||.++|+||||||||||+++|.|.++++ +|+|.+||+++++... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 346999999999999999999999999999999999999997 8999999999988764 478999999998887
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||+|||.++..- ..++++.+..+.+.++ | .+. .|++..||.|| +.
T Consensus 417 ~TI~~NI~~g~~~----------------------at~eei~~a~k~a~~~--------d-~I~--~lp~g~dt~vg-e~ 462 (567)
T COG1132 417 GTIRENIALGRPD----------------------ATDEEIEEALKLANAH--------E-FIA--NLPDGYDTIVG-ER 462 (567)
T ss_pred ccHHHHHhcCCCC----------------------CCHHHHHHHHHHhChH--------H-HHH--hCcccccceec-CC
Confidence 7999999986321 0112333333332211 2 222 34667899999 67
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+..||||||||++||||++.+|+||+||||||+||+.+...|.+.++++.+ ++|+++..|.+ .+...+|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEEEEEEC
Confidence 788999999999999999999999999999999999999999999997763 56888877766 34555999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|++++.|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=332.40 Aligned_cols=207 Identities=20% Similarity=0.273 Sum_probs=172.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCC--C
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHD--L 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 257 (1472)
..+|+|||+.|++||+++|+|+||||||||+++|+|.++++ +|+|.++|+++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999999886 8999999999865432 35799999997 5
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc-ccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI-CADIM 336 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~ 336 (1472)
+.|.+||.+++.+..+.... ..+.+. ...+..+++.+||+. ..|+.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~~~~------------------------~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSAAER------------------------REKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCHHHH------------------------HHHHHHHHHHCCCChHHhcCC
Confidence 88999999999765432110 000000 012356788999963 55655
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+ ..|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|++.|+ ...+.+++|+|
T Consensus 152 p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~adrv 225 (327)
T PRK11308 152 P-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD-LSVVEHIADEV 225 (327)
T ss_pred C-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEE
Confidence 4 45999999999999999999999999999999999999999999999987668888887765 45777899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998875
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=321.70 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=167.4
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEc-CCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYIS-QHDLHHG 260 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~-Q~d~~~~ 260 (1472)
..+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|++..... .++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4467999999999999999999999999999999999999887 899999998754321 235799997 5567778
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.+||+|++.+.....+... .+ . ....+.+++.+||++..|+.+++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~gl~~~~~~~~~~- 153 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------AR----------F--------------KKRLDELSELLDLEELLDTPVRQ- 153 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------HH----------H--------------HHHHHHHHHHcCChhHhcCChhh-
Confidence 9999999987543221100 00 0 00134578889999888887765
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|+
T Consensus 154 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~ 228 (236)
T cd03267 154 ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID 228 (236)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999998766789888887764 7778999999999
Q ss_pred CCeEEEec
Q 045902 421 EGEIVYQG 428 (1472)
Q Consensus 421 ~G~iv~~G 428 (1472)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=321.37 Aligned_cols=197 Identities=27% Similarity=0.401 Sum_probs=168.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+|++++|||+++|+||||||||||+++|+|..++ ..|+|.++|.+... ...++.++|++|++..++.+|+.
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4699999999999999999999999999999999998773 58999999987643 12346789999999998899999
Q ss_pred HHHHHHHHcCCCc----hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 982 ESLLYSAWLRLPK----DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 982 e~l~~~~~l~~~~----~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
||+.+....+... ...++++++.+++.+..++.. ..||+|||||++||++|+.+|++++|||||+|||+.+
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~ 165 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKL 165 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 9998765433211 234667888888877666543 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1058 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 166 ~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 166 RKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999865 899999999975 46788999999985 788888764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=322.04 Aligned_cols=205 Identities=22% Similarity=0.363 Sum_probs=170.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHDLHHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 260 (1472)
+.+|+|+|++++|||+++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 46999999999999999999999999999999999999887 899999999876421 1357999999999999
Q ss_pred CCCHHHHHHHhhhc-cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 261 EMTVRETLDFSGRC-LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
.+||+||+.+.... .+. ...+ . ...++.+++.+||++..|..+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~----------~~~~----------~--------------~~~~~~~l~~~gl~~~~~~~~~- 135 (240)
T PRK09493 91 HLTALENVMFGPLRVRGA----------SKEE----------A--------------EKQARELLAKVGLAERAHHYPS- 135 (240)
T ss_pred CCcHHHHHHhHHHHhcCC----------CHHH----------H--------------HHHHHHHHHHcCChHHHhcChh-
Confidence 99999999875321 110 0000 0 0013557888999877776654
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++++ .++|+|++.|++. ++.+++|++++|
T Consensus 136 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 209 (240)
T PRK09493 136 ----ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIG-FAEKVASRLIFI 209 (240)
T ss_pred ----hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999875 4788888887654 677899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999987764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=342.69 Aligned_cols=214 Identities=26% Similarity=0.430 Sum_probs=180.3
Q ss_pred cceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcC
Q 045902 874 QPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG 953 (1472)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G 953 (1472)
.++.+..+|+++.++ +++++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 456667778887753 234899999999999999999999999999999999999874 589999999
Q ss_pred ccC---ChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccccc------ccCCCCCCCCC
Q 045902 954 YPK---KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS------LVGLPGVDGLS 1024 (1472)
Q Consensus 954 ~~~---~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~------~~~~~~~~~LS 1024 (1472)
.+. +...+++.++||+|++.+++. |++||+.+... ...++.+.++++..++.++.+. .+|. +.++||
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LS 458 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLS 458 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCC
Confidence 875 456788999999999998865 99999987532 1234667788888888776554 3333 346899
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|++ |+++.
T Consensus 459 gGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld~-G~l~~ 534 (559)
T COG4988 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLDN-GRLVE 534 (559)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEecC-Cceec
Confidence 9999999999999999999999999999999999999999999986 599999999964 5678899999985 78999
Q ss_pred EcCCC
Q 045902 1105 AGPLG 1109 (1472)
Q Consensus 1105 ~g~~~ 1109 (1472)
.|...
T Consensus 535 ~g~~~ 539 (559)
T COG4988 535 QGTHE 539 (559)
T ss_pred cCCHH
Confidence 88753
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=319.57 Aligned_cols=209 Identities=24% Similarity=0.350 Sum_probs=168.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+... .....+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 46778877654210 001359999999999999999999999999999999999876 4589999999875
Q ss_pred Chh---c---c-cceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 957 KQE---T---F-ARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 957 ~~~---~---~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
... . . ++.++|++|++.+++.+|+.||+.+....+. +. ...++++++.+++.+..+..+ ..|||
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 149 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSG 149 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCH
Confidence 321 1 1 2468999999988899999999987654321 11 134567788888776555543 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+++.
T Consensus 150 Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 150 GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 9999999999999999999999999999999999999999999764 899999999976 34 66999999985 67653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=327.93 Aligned_cols=199 Identities=27% Similarity=0.394 Sum_probs=167.1
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~l 978 (1472)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 3569999999999999999999999999999999999876 358999999987532 23345689999998778889
Q ss_pred CHHHHHHHHHH-c----CCCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCC
Q 045902 979 TIYESLLYSAW-L----RLPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050 (1472)
Q Consensus 979 Tv~e~l~~~~~-l----~~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPT 1050 (1472)
||.||+.+... . ..+. ...++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 165 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPT 165 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999987421 1 1111 134567788888876655543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1051 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||+.++..+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|+.+
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 166 NHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 999999999999999999877899999999986 47788999999985 7888888754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=327.68 Aligned_cols=215 Identities=23% Similarity=0.298 Sum_probs=171.2
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---CeeEEEEEEc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GYIEGSISIS 952 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 952 (1472)
..+.++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4577888876652 24699999999999999999999999999999999998642 1358999999
Q ss_pred CccCC-----hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc--hHHHHHHHHHccccc-ccccccCCCCCCCC
Q 045902 953 GYPKK-----QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK--DMFVEEVMELVEMKA-LRNSLVGLPGVDGL 1023 (1472)
Q Consensus 953 G~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~--~~~~~~v~~~l~l~~-~~~~~~~~~~~~~L 1023 (1472)
|.++. ....++.++|++|++.+++ .||+||+.+.+..+. .. ++.++++++.+++.. +.+.. . ..+..|
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~-~~~~~L 155 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKL-N-ESGYSL 155 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhh-C-CCcccC
Confidence 98753 1234567899999998887 499999988654332 11 234456677776632 11111 1 123579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEec-----
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR----- 1098 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~----- 1098 (1472)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++
T Consensus 156 S~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~ 233 (269)
T PRK14259 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEG 233 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999964 799999999986 57789999999985
Q ss_pred -----CcEEEEEcCC
Q 045902 1099 -----GGHVIYAGPL 1108 (1472)
Q Consensus 1099 -----gg~v~~~g~~ 1108 (1472)
.|++++.|+.
T Consensus 234 ~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 234 GSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccceEEEeCCH
Confidence 2678888875
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=330.52 Aligned_cols=196 Identities=24% Similarity=0.368 Sum_probs=162.2
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hcccceeEEeccCC--C
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETFARISGYCEQND--I 973 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~~~~~gyv~Q~~--~ 973 (1472)
+++|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 359999999999999999999999999999999999876 358999999987532 23456789999996 3
Q ss_pred CCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccC
Q 045902 974 HSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDE 1048 (1472)
++ ..|++||+.+..... ...+ ..++++++.+++. ...+.. +..||||||||++||+||+.+|++|+|||
T Consensus 98 ~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDE 171 (280)
T PRK13649 98 LF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILVLDE 171 (280)
T ss_pred hc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44 469999998764332 1221 2356677788775 333433 34799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1049 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1049 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (280)
T PRK13649 172 PTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKP 229 (280)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999877899999999976 46678999999985 788888875
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.76 Aligned_cols=213 Identities=22% Similarity=0.330 Sum_probs=170.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-YIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~G~ 954 (1472)
+.++|+++.+. ++.+|+|+|++|++||++||+||||||||||+++|+|..+ +. +.+|+|.++|.
T Consensus 5 l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (252)
T PRK14256 5 VKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT 71 (252)
T ss_pred EEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCE
Confidence 56777766542 3469999999999999999999999999999999999864 21 24899999998
Q ss_pred cCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHccccc-ccccccCCCCCCCC
Q 045902 955 PKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMKA-LRNSLVGLPGVDGL 1023 (1472)
Q Consensus 955 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~~-~~~~~~~~~~~~~L 1023 (1472)
++.. ..+++.++|++|+..+++.+|+.||+.+...... ... ..++++++.+++.. +.+.... .+..|
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~L 149 (252)
T PRK14256 72 DIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKS--NAMEL 149 (252)
T ss_pred EcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhC--CcCcC
Confidence 7532 2346679999999999999999999987543321 111 34566777777643 1121111 24579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.||++++|.+ |+++
T Consensus 150 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~ 226 (252)
T PRK14256 150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLV 226 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999975 689999999976 46788999999975 7899
Q ss_pred EEcCC
Q 045902 1104 YAGPL 1108 (1472)
Q Consensus 1104 ~~g~~ 1108 (1472)
..|+.
T Consensus 227 ~~~~~ 231 (252)
T PRK14256 227 ECGET 231 (252)
T ss_pred EeCCH
Confidence 88875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=340.29 Aligned_cols=201 Identities=20% Similarity=0.297 Sum_probs=170.2
Q ss_pred cccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc----CC---hhc---c-cceeEEe
Q 045902 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP----KK---QET---F-ARISGYC 968 (1472)
Q Consensus 900 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~----~~---~~~---~-~~~~gyv 968 (1472)
++...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+ +. ... . ++.++|+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 345679999999999999999999999999999999999877 458999999962 21 111 1 2579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 045902 969 EQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044 (1472)
Q Consensus 969 ~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il 1044 (1472)
+|+..+++.+||+||+.|....+. +.. ..++++++.++|.+..+... ..||||||||++|||||+.+|+||
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998765432 222 34567888888877666553 479999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1045 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1045 ~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999999765 899999999976 57789999999985 7899999864
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=323.71 Aligned_cols=204 Identities=25% Similarity=0.337 Sum_probs=169.4
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----------CCceEEEEcCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----------PQRTCAYISQH 255 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----------~~~~~~yv~Q~ 255 (1472)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5899999999999999999999999999999999999887 899999999875321 13579999999
Q ss_pred CCCCCCCCHHHHHHHhhhc-cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc
Q 045902 256 DLHHGEMTVRETLDFSGRC-LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD 334 (1472)
Q Consensus 256 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 334 (1472)
+.+++.+||+||+.++... .+.. .. +. ...++.+++.+||++..|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGEP----------KE----------EA--------------TARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCCC----------HH----------HH--------------HHHHHHHHHHcCCcchhh
Confidence 9999999999999875321 1100 00 00 001345788899987777
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|
T Consensus 140 ~~~~-----~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~d 212 (250)
T PRK11264 140 SYPR-----RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVAD 212 (250)
T ss_pred CChh-----hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcC
Confidence 6554 4999999999999999999999999999999999999999999999875 478888877665 46778999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 045902 415 DIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 415 ~iilL~~G~iv~~G~~~~~~ 434 (1472)
++++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987763
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=329.07 Aligned_cols=197 Identities=29% Similarity=0.385 Sum_probs=165.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-----hcccceeEEeccCCC-CCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-----ETFARISGYCEQNDI-HSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~-~~~ 976 (1472)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 469999999999999999999999999999999999876 358999999987631 124567999999963 334
Q ss_pred CCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
..||.|++.+..... .... ..+.++++.+++.++.++.. ..||||||||++||++|+.+|++|+|||||+|
T Consensus 93 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~g 167 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167 (275)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 579999998754321 1111 34667888888877766653 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+.++..+++.|++++++|.|||+++|+++ ++.+.||++++|++ |+++..|+.
T Consensus 168 LD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 221 (275)
T PRK13639 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTP 221 (275)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999877999999999976 46678999999986 788888875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=322.77 Aligned_cols=192 Identities=24% Similarity=0.342 Sum_probs=161.2
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHH
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLL 985 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 985 (1472)
|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 45899999998764321 12489999999999999999998
Q ss_pred HHHH--cC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 986 YSAW--LR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 986 ~~~~--l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
+... .. .... ..++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 7532 11 1111 23567788888876655543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1060 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1060 ~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 999999999765 899999999976 47788999999985 788877754
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=322.49 Aligned_cols=197 Identities=28% Similarity=0.427 Sum_probs=164.2
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEec-cCCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCE-QNDIHSPN 977 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~-Q~~~~~~~ 977 (1472)
+.+++|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34679999999999999999999999999999999999876 458999999986432 23456789997 55677788
Q ss_pred CCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 978 VTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
+|++|++.+....+. ... ..++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 999999987654432 221 24567788888877666553 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1054 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999764 899999999976 46788999999985 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=326.84 Aligned_cols=216 Identities=22% Similarity=0.322 Sum_probs=171.9
Q ss_pred cceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-CeeEEEEE
Q 045902 874 QPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GYIEGSIS 950 (1472)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~ 950 (1472)
....+.++|+++.+. +..+|+|+|++|++||+++|+||||||||||+++|+|..+ + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 344677888877652 2469999999999999999999999999999999999864 1 13589999
Q ss_pred EcCccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC--CCch---HHHHHHHHHccccc-ccccccCCCC
Q 045902 951 ISGYPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR--LPKD---MFVEEVMELVEMKA-LRNSLVGLPG 1019 (1472)
Q Consensus 951 i~G~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~--~~~~---~~~~~v~~~l~l~~-~~~~~~~~~~ 1019 (1472)
++|.++.. ..+++.++|++|+..+++ .|++||+.+..... .+.. ..++++++.+++.. +.+. ... .
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~-~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDK-LHQ-S 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH-Hhc-C
Confidence 99987631 234567999999988777 89999998765422 1221 34567777777632 1111 111 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.+|++++|++
T Consensus 154 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~- 230 (260)
T PRK10744 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFMYL- 230 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999996 4789999999976 46678999999985
Q ss_pred cEEEEEcCC
Q 045902 1100 GHVIYAGPL 1108 (1472)
Q Consensus 1100 g~v~~~g~~ 1108 (1472)
|+++..|+.
T Consensus 231 G~i~~~g~~ 239 (260)
T PRK10744 231 GELIEFGNT 239 (260)
T ss_pred CEEEEeCCH
Confidence 789888874
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=317.35 Aligned_cols=186 Identities=24% Similarity=0.357 Sum_probs=157.7
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC---h----hcccceeEEeccCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK---Q----ETFARISGYCEQNDIH 974 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~---~----~~~~~~~gyv~Q~~~~ 974 (1472)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 3569999999999999999999999999999999999876 45899999998742 1 1245679999999999
Q ss_pred CCCCCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCC
Q 045902 975 SPNVTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPT 1050 (1472)
++.+|++||+.+...... .. ...++++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEPt 162 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEPT 162 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999999999988654322 11 234667888888876666543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1051 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
+|||+.++..+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 163 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 163 GSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999877999999999975 45689998875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=326.15 Aligned_cols=205 Identities=25% Similarity=0.304 Sum_probs=170.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---CCceEEEEcCCCC-CCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---PQRTCAYISQHDL-HHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 261 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999887 899999999886532 2457999999974 6778
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.+.....+.. .. +. ...++.+++.+||++..|+.++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~--- 141 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------PK----------KM--------------KDIIDDLAKKVGMEDYLDKEPQ--- 141 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------HH----------HH--------------HHHHHHHHHHcCCHHHhhCCcc---
Confidence 99999998754321100 00 00 0023557888999887777665
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..+|++++|++
T Consensus 142 --~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~ 217 (271)
T PRK13632 142 --NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE 217 (271)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999987654689999888875 34 47999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987763
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=321.98 Aligned_cols=192 Identities=23% Similarity=0.301 Sum_probs=162.8
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeEEeccCCCCCCCCCHHHHHHH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-TFARISGYCEQNDIHSPNVTIYESLLY 986 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 986 (1472)
|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999876 4589999999875431 224568999999999999999999986
Q ss_pred HHHcC--CC--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 987 SAWLR--LP--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 987 ~~~l~--~~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
..... .. .+..++++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~ 169 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 53211 11 1234677888888877666654 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1063 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1063 ~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 170 ~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 170 TLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999764 899999999976 46778999999985 789998875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=327.57 Aligned_cols=201 Identities=27% Similarity=0.399 Sum_probs=165.7
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC------eeEEEEEEcCccCCh---hcccceeEEeccCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------YIEGSISISGYPKKQ---ETFARISGYCEQND 972 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~ 972 (1472)
++.+|+|+|++|++||++||+||||||||||+++|+|..++. ..+|+|.++|.+... ..+++.++|++|++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 356999999999999999999999999999999999987632 127999999987532 33456689999998
Q ss_pred CCCCCCCHHHHHHHHHHcCC------C--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh------
Q 045902 973 IHSPNVTIYESLLYSAWLRL------P--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV------ 1038 (1472)
Q Consensus 973 ~~~~~lTv~e~l~~~~~l~~------~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~------ 1038 (1472)
..++.+|++||+.+...... . ....++++++.+++.+..++. +..|||||||||+||++|+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcccccc
Confidence 76667999999987532110 0 113456778888887665543 3479999999999999999
Q ss_pred ---hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1039 ---ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1039 ---~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+.+|++++|.+ |+++..|+..
T Consensus 168 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 168 DAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred ccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 599999999999999999999999999999876 899999999976 46678999999985 7899888764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.73 Aligned_cols=214 Identities=25% Similarity=0.321 Sum_probs=171.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---CeeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GYIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 577888876642 24699999999999999999999999999999999998653 13589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC---Cc---hHHHHHHHHHcccccccccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL---PK---DMFVEEVMELVEMKALRNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~---~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~ 1022 (1472)
.++.. ..+++.++|++|++.+++. |+.||+.+....+. +. ...++++++.+++.+....... ..+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 163 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGTG 163 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhh-CCccc
Confidence 87632 2345678999999888875 99999988654321 11 1335667777777432111111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |++
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i 240 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GNL 240 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999965 789999999976 46678999999985 789
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 241 ~~~g~~ 246 (267)
T PRK14235 241 VEVGDT 246 (267)
T ss_pred EEeCCH
Confidence 888874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=340.60 Aligned_cols=192 Identities=27% Similarity=0.402 Sum_probs=165.6
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hcccceeEEeccCCCCCCCCCH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 358999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHcCCCc--hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHH
Q 045902 981 YESLLYSAWLRLPK--DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~--~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~ 1058 (1472)
+||+.|........ ...++++++.+++.+..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.++
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~ 167 (354)
T TIGR02142 93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRK 167 (354)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 99998865432211 234678888888887766653 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1059 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1059 ~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 168 ~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 168 YEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 9999999999865 899999999986 57788999999985 789888875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.20 Aligned_cols=206 Identities=21% Similarity=0.328 Sum_probs=171.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|.++....+ ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999887 8999999998765432 3569999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.+..+..... ...+ . ....+.+++.+||++..++.++
T Consensus 93 ~tv~enl~~~~~~~~~~---------~~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~--- 136 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDL---------SAEQ----------R--------------EDRANELMEEFHIEHLRDSMGQ--- 136 (241)
T ss_pred CcHHHHHhhhhhccccc---------CHHH----------H--------------HHHHHHHHHHcCCHHHhhcchh---
Confidence 99999998753321100 0000 0 0123457888899876665554
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.++++++ .+.|+|++.|++ .++.+++|++++|++
T Consensus 137 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 137 --SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQ 212 (241)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999875 578888888765 478889999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987763
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=333.26 Aligned_cols=219 Identities=18% Similarity=0.240 Sum_probs=171.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC-C-eeEEEEEEcCcc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-G-YIEGSISISGYP 955 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~-~~~G~i~i~G~~ 955 (1472)
+.++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 5677776655311 1124699999999999999999999999999999999998652 2 358999999988
Q ss_pred CCh---hcc----cceeEEeccCC--CCCCCCCHHHHHHHHHHcC--CCch---HHHHHHHHHcccccccccccCCCCCC
Q 045902 956 KKQ---ETF----ARISGYCEQND--IHSPNVTIYESLLYSAWLR--LPKD---MFVEEVMELVEMKALRNSLVGLPGVD 1021 (1472)
Q Consensus 956 ~~~---~~~----~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~--~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~ 1021 (1472)
+.. ..+ ++.++|++|++ .+.|.+|+.+++....... .... +.+.++++.+++.+..+..... +.
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~--p~ 152 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY--PH 152 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC--ch
Confidence 632 111 23689999998 4788999998876544322 2222 3456777777775432222222 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 045902 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100 (1472)
Q Consensus 1022 ~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg 1100 (1472)
.|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|||++|||++ .+.+.+|++++|.+ |
T Consensus 153 ~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G 230 (326)
T PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-G 230 (326)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 7999999999999999999999999999999999999999999999976 4899999999976 36678999999985 7
Q ss_pred EEEEEcCCC
Q 045902 1101 HVIYAGPLG 1109 (1472)
Q Consensus 1101 ~v~~~g~~~ 1109 (1472)
+++..|+..
T Consensus 231 ~ive~g~~~ 239 (326)
T PRK11022 231 QVVETGKAH 239 (326)
T ss_pred EEEEECCHH
Confidence 999999853
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=326.93 Aligned_cols=197 Identities=24% Similarity=0.357 Sum_probs=164.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh------cccceeEEeccCC--CC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE------TFARISGYCEQND--IH 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~------~~~~~~gyv~Q~~--~~ 974 (1472)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 579999999999999999999999999999999999876 4589999999875421 1356799999996 46
Q ss_pred CCCCCHHHHHHHHHH-cC-CCc---hHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccC
Q 045902 975 SPNVTIYESLLYSAW-LR-LPK---DMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~-l~-~~~---~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDE 1048 (1472)
.+.+||.|++.+... .. ... ...++++++.+++. .+.+.. +..||||||||++|||||+.+|++|+|||
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGe~qrv~laral~~~p~illLDE 176 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKL-----PRQLSGGQLQRINIARALAVKPKLIVLDE 176 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 678999999976532 11 121 23456778888874 444543 34799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1049 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1049 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+|||+.++..+.+.|+++.++ |+|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (265)
T TIGR02769 177 AVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDV 235 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCH
Confidence 99999999999999999999865 899999999976 46678999999985 789998885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=316.81 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=164.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
..+|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++....+ ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35899999999999999999999999999999999999887 8999999998865432 2469999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||.||+.+.....+.. . ++. ...++.+++.+||.+..++.+.
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~----------~----------~~~--------------~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGES----------S----------RQS--------------RNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC----------H----------HHH--------------HHHHHHHHHHcCCHhHhhCChh
Confidence 99999999998754321100 0 000 0013557888999877776665
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++
T Consensus 146 -----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~ 218 (228)
T PRK10584 146 -----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLR 218 (228)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEE
Confidence 499999999999999999999999999999999999999999999997655789999888765 44 56999999
Q ss_pred ecCCeEEEe
Q 045902 419 LSEGEIVYQ 427 (1472)
Q Consensus 419 L~~G~iv~~ 427 (1472)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=319.89 Aligned_cols=202 Identities=27% Similarity=0.345 Sum_probs=167.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 36999999999999999999999999999999999999987 8999999998765432 3469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhC-CcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG-LDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~vg~~ 340 (1472)
+||+||+.++....+.. ..+ ..+.+++.++ +++..|+.++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~~~---------------------------~~~~~l~~~~~l~~~~~~~~~-- 130 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------SRK---------------------------IPDEIYELFPVLKEMLGRRGG-- 130 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------hHH---------------------------HHHHHHHHHHhHHHHhhCChh--
Confidence 99999998764321100 000 0133455554 4544555554
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++++..+.|+|++.|++ .++.+++|++++|+
T Consensus 131 ---~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 131 ---DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVME 206 (230)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999998765578988888775 47778999999999
Q ss_pred CCeEEEecChhHH
Q 045902 421 EGEIVYQGPREYV 433 (1472)
Q Consensus 421 ~G~iv~~G~~~~~ 433 (1472)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=365.41 Aligned_cols=128 Identities=21% Similarity=0.309 Sum_probs=101.3
Q ss_pred CCCCCCHHHHHHHHHHcC----CCch---HHHHHHHHHcccccc-cccccCCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 045902 974 HSPNVTIYESLLYSAWLR----LPKD---MFVEEVMELVEMKAL-RNSLVGLPGVDGLSTEQRKRLTIAVELV---ANPS 1042 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~l~----~~~~---~~~~~v~~~l~l~~~-~~~~~~~~~~~~LSgGqrqRl~iA~aL~---~~p~ 1042 (1472)
.+...||.|+|.+...-. .+.. ..+ ++++.+++.++ .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 456789999998764311 1111 223 35666677654 3443 3479999999999999998 5999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCCC
Q 045902 1043 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPLG 1109 (1472)
Q Consensus 1043 il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~~ 1109 (1472)
+++|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. .+|+++..|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999976 348999999995 368999999864
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=364.11 Aligned_cols=209 Identities=21% Similarity=0.345 Sum_probs=171.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999998 8999999999987654 467999999998886 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.++..-. ..++++.+..+.+.+ +..++ .|++..||.+|+ .+
T Consensus 432 Ti~~Ni~~~~~~~---------------------~~~~~i~~al~~~~l---------~~~i~--~lp~Gldt~ig~-~g 478 (582)
T PRK11176 432 TIANNIAYARTEQ---------------------YSREQIEEAARMAYA---------MDFIN--KMDNGLDTVIGE-NG 478 (582)
T ss_pred hHHHHHhcCCCCC---------------------CCHHHHHHHHHHhCc---------HHHHH--hcccccCceeCC-CC
Confidence 9999998752100 011122222222111 12222 256678999985 56
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. .++|+|++.|++ +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999999874 368988888876 567889999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=320.66 Aligned_cols=197 Identities=28% Similarity=0.430 Sum_probs=167.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-TFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 469999999999999999999999999999999999876 3589999999876432 2346789999999999999999
Q ss_pred HHHHHHHHcCCCc----hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 982 ESLLYSAWLRLPK----DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 982 e~l~~~~~l~~~~----~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
||+.+....+... .+.++++++.+++.+..++.. ..||+||+||++||++|+.+|++++|||||+|||+.+
T Consensus 91 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 165 (237)
T TIGR00968 91 DNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165 (237)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 9998765433211 134567778887766656543 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1058 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 166 ~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 166 RKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999998775 899999999976 46788999999985 788888875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=340.21 Aligned_cols=191 Identities=23% Similarity=0.360 Sum_probs=166.2
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hcccceeEEeccCCCCCCCCCH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 358999999987532 2245679999999999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHH
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~ 1060 (1472)
+||+.|... ......++++++.+++.++.++.. ..|||||||||+|||||+.+|++|+|||||+|||+.++..
T Consensus 94 ~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~ 166 (352)
T PRK11144 94 RGNLRYGMA--KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred HHHHHhhhh--hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 999988643 122356788899999887766653 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1061 VMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1061 i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 167 l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 167 LLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 99999999765 899999999986 57788999999985 7899888753
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=323.90 Aligned_cols=215 Identities=22% Similarity=0.311 Sum_probs=173.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCC-CCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDL-HHGEM 262 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 262 (1472)
.+|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++..... ++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 5899999999999999999999999999999999999887 8999999998765322 357999999974 67788
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|+++|+.|.....+.. .. +. ...++.+++.+||.+..|+.++
T Consensus 100 ~v~~~~~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~---- 141 (269)
T PRK13648 100 IVKYDVAFGLENHAVP----------YD----------EM--------------HRRVSEALKQVDMLERADYEPN---- 141 (269)
T ss_pred cHHHHHHhhHHhcCCC----------HH----------HH--------------HHHHHHHHHHcCCchhhhCCcc----
Confidence 9999998864321110 00 00 0013457888999877776654
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. +|+|++|++|
T Consensus 142 -~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G 218 (269)
T PRK13648 142 -ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKG 218 (269)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECC
Confidence 599999999999999999999999999999999999999999999987655789999888865 4554 9999999999
Q ss_pred eEEEecChhHHHH---HHHhcCCCCC
Q 045902 423 EIVYQGPREYVLD---FFESVGFRCP 445 (1472)
Q Consensus 423 ~iv~~G~~~~~~~---~F~~~G~~cp 445 (1472)
++++.|+.+++.+ .+...|+++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999887632 3333444444
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=336.73 Aligned_cols=207 Identities=28% Similarity=0.436 Sum_probs=171.6
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
-++.|+|+.+++. +++++|+|+||+|++||.+||+|+|||||||++|+|.+... .+|+|.|||++
T Consensus 350 ~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~d 414 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQD 414 (591)
T ss_pred CcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCee
Confidence 4589999988763 34569999999999999999999999999999999999775 48999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccc----------cCCCCCCC
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSL----------VGLPGVDG 1022 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~----------~~~~~~~~ 1022 (1472)
+++ +..|+.+||||||..++. -||.+|+.|+. .+..-|++.+.++..++.|.. +|..| ..
T Consensus 415 ik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG-~~ 487 (591)
T KOG0057|consen 415 IKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERG-LM 487 (591)
T ss_pred HhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcc-cc
Confidence 643 567889999999988875 59999999863 222234444444444444433 44433 35
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
|||||||||+||||++.+|+|+++|||||.||..+.+.+++.+++. ..|+|+|++.|+. ++...||+|++|++ |++
T Consensus 488 LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~n-G~v 563 (591)
T KOG0057|consen 488 LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDN-GTV 563 (591)
T ss_pred cccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEEC-Cee
Confidence 9999999999999999999999999999999999999999999994 4589999999985 57899999999986 688
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
...|+.
T Consensus 564 ~e~gth 569 (591)
T KOG0057|consen 564 KEYGTH 569 (591)
T ss_pred EEeccH
Confidence 888875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=324.80 Aligned_cols=205 Identities=25% Similarity=0.311 Sum_probs=170.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC----CCceEEEEcCCCC-CCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV----PQRTCAYISQHDL-HHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 260 (1472)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 899999999886432 2467999999974 233
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
..||.|++.|.....+.. .. +.+ ..++.+++.+||+...++.+++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~~----------~~~--------------~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------PE----------EIR--------------ERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------HH----------HHH--------------HHHHHHHHHCCCHhHhhCCccc-
Confidence 569999998864322110 00 000 1245678899998888877754
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++. ++. .+|++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEE
Confidence 99999999999999999999999999999999999999999999997656889999988776 444 499999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|+++++|+.+++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998874
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=326.99 Aligned_cols=211 Identities=23% Similarity=0.337 Sum_probs=173.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~-----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYP-----------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcC-----------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 467888876542 013469999999999999999999999999999999999876 3589999999886
Q ss_pred Ch---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 957 KQ---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. ..+++.++|++|++. .++.+|++||+.+..... ...+ ..++++++.+++.+..++.. ..||||||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 148 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQK 148 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHH
Confidence 42 234667999999974 567789999998764332 2222 24567888888877666553 47999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++. + ..+|++++|.+ |+++..|+
T Consensus 149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~g~ 225 (271)
T PRK13632 149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIAQGK 225 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEEecC
Confidence 9999999999999999999999999999999999999999766 5999999999863 4 57999999985 78888887
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 226 ~ 226 (271)
T PRK13632 226 P 226 (271)
T ss_pred H
Confidence 5
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=332.92 Aligned_cols=220 Identities=21% Similarity=0.300 Sum_probs=173.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCcc
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-YIEGSISISGYP 955 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~G~~ 955 (1472)
.+.++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 46778877655321 12356999999999999999999999999999999999987642 238999999988
Q ss_pred CCh---hc---cc-ceeEEeccCC--CCCCCCCHHHHHHHHHHcC--CCch---HHHHHHHHHcccccccccccCCCCCC
Q 045902 956 KKQ---ET---FA-RISGYCEQND--IHSPNVTIYESLLYSAWLR--LPKD---MFVEEVMELVEMKALRNSLVGLPGVD 1021 (1472)
Q Consensus 956 ~~~---~~---~~-~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~--~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~ 1021 (1472)
+.. .. ++ +.++|++|++ .+.|.+|+.+++.+..... .... ..+.++++.+++.+..+.... .+.
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~--~p~ 160 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKM--YPH 160 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcC--Ccc
Confidence 632 22 22 4799999998 6789999999987654332 1222 344566676666543222222 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCc
Q 045902 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100 (1472)
Q Consensus 1022 ~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg 1100 (1472)
.||||||||++||+||+.+|++|++||||+|||+.++..++++|+++.++ |.|||++|||++ .+.+.+|++++|.+ |
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~-G 238 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA-G 238 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 89999999999999999999999999999999999999999999999765 899999999976 46678999999985 7
Q ss_pred EEEEEcCCC
Q 045902 1101 HVIYAGPLG 1109 (1472)
Q Consensus 1101 ~v~~~g~~~ 1109 (1472)
+++..|+..
T Consensus 239 ~ive~g~~~ 247 (330)
T PRK09473 239 RTMEYGNAR 247 (330)
T ss_pred EEEEECCHH
Confidence 999999853
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=324.54 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=173.4
Q ss_pred cceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---CeeEEEEE
Q 045902 874 QPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GYIEGSIS 950 (1472)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~ 950 (1472)
....+.++|+++.++ .+.+|+|||+++++||++||+|||||||||||++|+|..++ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344678888877652 35699999999999999999999999999999999998653 14689999
Q ss_pred EcCccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-C-Cc---hHHHHHHHHHcccccccccccCCCCC
Q 045902 951 ISGYPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-L-PK---DMFVEEVMELVEMKALRNSLVGLPGV 1020 (1472)
Q Consensus 951 i~G~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~ 1020 (1472)
++|.+... ...++.++|++|++.+++ .||+||+.+..... . .. +..++++++.+++.+..+..... .+
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 161 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHK-SA 161 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcC-Cc
Confidence 99987632 234567899999988877 59999998764322 1 11 13355667777774321122222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 045902 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg 1100 (1472)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|++ |
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~-G 238 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL-G 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC-C
Confidence 5899999999999999999999999999999999999999999999996 4799999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 045902 1101 HVIYAGPL 1108 (1472)
Q Consensus 1101 ~v~~~g~~ 1108 (1472)
+++..|+.
T Consensus 239 ~i~~~g~~ 246 (267)
T PRK14237 239 DLIEYDKT 246 (267)
T ss_pred EEEEeCCH
Confidence 89998875
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=336.47 Aligned_cols=211 Identities=25% Similarity=0.376 Sum_probs=171.0
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCC
Q 045902 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHH 259 (1472)
Q Consensus 183 ~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 259 (1472)
.++.++|+|+|+++++||.+||+|++|||||||++.|+|-++++ +|+|+.||.++....+ ++.+++++|...+|
T Consensus 348 ~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 348 GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLF 424 (573)
T ss_pred CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence 34457999999999999999999999999999999999999998 9999999999988766 35789999976666
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
.-|+|+||..+...- .|+++.+..+...+ +..++ +.++..||.+|
T Consensus 425 -~~Tlr~NL~lA~~~A----------------------sDEel~~aL~qvgL---------~~l~~--~~p~gl~t~lg- 469 (573)
T COG4987 425 -SGTLRDNLRLANPDA----------------------SDEELWAALQQVGL---------EKLLE--SAPDGLNTWLG- 469 (573)
T ss_pred -HHHHHHHHhhcCCCC----------------------CHHHHHHHHHHcCH---------HHHHH--hChhhhhchhc-
Confidence 569999998753210 11222222221111 11111 23345688888
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
+.++.||||||||++|||+|+.++++++|||||.|||+.|+.++++.|.+.+ .++|+++..|+-. -.+.||+|++|
T Consensus 470 e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~--~le~~drIivl 545 (573)
T COG4987 470 EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLR--GLERMDRIIVL 545 (573)
T ss_pred cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccc--cHhhcCEEEEE
Confidence 6788899999999999999999999999999999999999999999998765 5899999888754 34789999999
Q ss_pred cCCeEEEecChhHHHH
Q 045902 420 SEGEIVYQGPREYVLD 435 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~~ 435 (1472)
++|+++++|.+++++.
T Consensus 546 ~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 546 DNGKIIEEGTHAELLA 561 (573)
T ss_pred ECCeeeecCCHHhhhc
Confidence 9999999999999864
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.49 Aligned_cols=212 Identities=26% Similarity=0.324 Sum_probs=173.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4678888765421 11358999999999999999999999999999999999876 4589999999876
Q ss_pred Ch---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 957 KQ---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. ...++.++|++|++. +++..|+.+++.+...... +.+ ..++++++.+++.+..+.. +..||+|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 148 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQK 148 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 32 344567999999974 6778899999987654322 212 3456778888887666654 347999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++. +. .+|++++|.+ |++++.|+
T Consensus 149 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~-G~i~~~g~ 225 (269)
T PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNK-GTVYKEGT 225 (269)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEEC-CEEEEecC
Confidence 9999999999999999999999999999999999999999765 8999999999863 44 4999999985 78998887
Q ss_pred CC
Q 045902 1108 LG 1109 (1472)
Q Consensus 1108 ~~ 1109 (1472)
.+
T Consensus 226 ~~ 227 (269)
T PRK13648 226 PT 227 (269)
T ss_pred HH
Confidence 53
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=330.20 Aligned_cols=215 Identities=20% Similarity=0.307 Sum_probs=169.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++.. ......+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 36778877665210 0001359999999999999999999999999999999999876 3589999999875
Q ss_pred C--------hhcccceeEEeccCCCC-CCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccc-cccccccCCCCCCC
Q 045902 957 K--------QETFARISGYCEQNDIH-SPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMK-ALRNSLVGLPGVDG 1022 (1472)
Q Consensus 957 ~--------~~~~~~~~gyv~Q~~~~-~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~ 1022 (1472)
. ...+++.++|++|++.. +...|++||+.+..... ...+ ..++++++.+++. ++.++. +..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~ 150 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRS-----PFE 150 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhh
Confidence 2 12345678999999742 23469999998865422 1221 2355677777773 454443 347
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~ 228 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GK 228 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999764 899999999976 57788999999985 78
Q ss_pred EEEEcCC
Q 045902 1102 VIYAGPL 1108 (1472)
Q Consensus 1102 v~~~g~~ 1108 (1472)
+++.|+.
T Consensus 229 i~~~g~~ 235 (289)
T PRK13645 229 VISIGSP 235 (289)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=322.90 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=163.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC-CeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.++.. ..+++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 4699999999999999999999999999999999997542 2458999999987642 234567899999988887 6
Q ss_pred CHHHHHHHHHHcCC---Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 979 TIYESLLYSAWLRL---PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~---~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
|++||+.+....+. +.+ ..++++++.+++......... .....||||||||++|||+|+.+|++|+|||||+|
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~ 172 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSA 172 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999987654321 111 235667788777422111111 12357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 173 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 225 (246)
T PRK14269 173 LDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGES 225 (246)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCH
Confidence 999999999999999864 899999999976 46778999999985 789988874
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=327.90 Aligned_cols=237 Identities=27% Similarity=0.402 Sum_probs=195.8
Q ss_pred HhhcCCCCCcceEEEeeeEEEEEEecCCCcCCChhHhHHHHHHhhhhhcccccCCcccceeeeceeeEEeCCeEEEEEcC
Q 045902 128 TDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGP 207 (1472)
Q Consensus 128 ~~~~~~~~p~~~v~f~~L~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~ilGp 207 (1472)
-+++.++-|+-.+..|++++- + ...++++|+|+||.+.|||-++|+||
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~-------------------------------P-Pg~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAA-------------------------------P-PGQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred cCCCCCCCCCceeeEeeeeec-------------------------------C-CCCCCcceecceeEecCCceEEEECC
Confidence 345778888989999998862 1 12346899999999999999999999
Q ss_pred CCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC---ceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHH
Q 045902 208 PGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELL 284 (1472)
Q Consensus 208 ~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 284 (1472)
||||||||.++|.|..+|. +|.|.+||.+++..++. +.+||.||+-.+|+ .||.|||. |+.
T Consensus 371 SgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~--------- 434 (580)
T COG4618 371 SGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFG--------- 434 (580)
T ss_pred CCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hcc---------
Confidence 9999999999999999987 99999999999887654 78999999877775 59999993 221
Q ss_pred HHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCc
Q 045902 285 AELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364 (1472)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~ 364 (1472)
++.+.++..+|+.+.|. .|. ++.|++..||.|| +-+.+||||||||+++||||+++|.
T Consensus 435 -------------~~~d~~kIieAA~lAgv-----Hel---Il~lP~GYdT~iG-~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 435 -------------EEADPEKVIEAARLAGV-----HEL---ILRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred -------------ccCCHHHHHHHHHHcCh-----HHH---HHhCcCCccCccC-CCCCCCCchHHHHHHHHHHHcCCCc
Confidence 11222233333333321 122 4679999999999 4677899999999999999999999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecChhHHHHHH
Q 045902 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLDFF 437 (1472)
Q Consensus 365 illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~~~~~~~F 437 (1472)
+++||||-|+||+.-...+.+.|.+... +|.|+|+..|.| .+....|+|++|++|++-.+|+++|++...
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999999865 678888887766 588899999999999999999999998754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=315.22 Aligned_cols=200 Identities=23% Similarity=0.293 Sum_probs=169.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++..+ +++.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR-------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec-------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 46778876553 234699999999999999999999999999999999998763 589999999876
Q ss_pred ChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHH
Q 045902 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAV 1035 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~ 1035 (1472)
.....++.++|++|++.+++.+|+.|++.+....+. ..+...+++++.+++.+..++.+ ..||+|||||++||+
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 150 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALAR 150 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHH
Confidence 543344568999999988888999999987654432 22345677888888876666543 479999999999999
Q ss_pred HHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1036 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1036 aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999888999999999986 5788999999886
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=371.22 Aligned_cols=206 Identities=26% Similarity=0.348 Sum_probs=170.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.+++++.. ++.++||+|++.+|+ .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 46899999999999999999999999999999999999998 8999999999987654 578999999998885 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.++..- . +++++.+..+.+.+ +..++ .++...||.+| +.+
T Consensus 568 Ti~eNi~l~~~~----~------------------~~~~i~~al~~~~l---------~~~i~--~lp~gl~t~i~-e~G 613 (710)
T TIGR03796 568 TVRDNLTLWDPT----I------------------PDADLVRACKDAAI---------HDVIT--SRPGGYDAELA-EGG 613 (710)
T ss_pred cHHHHhhCCCCC----C------------------CHHHHHHHHHHhCC---------HHHHH--hCcCcccceec-cCC
Confidence 999999764210 0 11122222222211 11222 35566799998 467
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.+||||||||++||||++++|++|+||||||+||+.++.+|.+.|++ .++|+|++.|++ ++...+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 88999999999999999999999999999999999999999999985 378999888876 466779999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=323.99 Aligned_cols=205 Identities=22% Similarity=0.321 Sum_probs=166.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-------CCceEEEEcCCCC-
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-------PQRTCAYISQHDL- 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 257 (1472)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999887 899999999876431 1356999999862
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc-ccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI-CADIM 336 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~ 336 (1472)
.+...||+||+.|.....+.. .. +.. ..++.+++.+||+. ..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~----------~~~--------------~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------QE----------EAE--------------ALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------HH----------HHH--------------HHHHHHHHHcCCChhhhhCC
Confidence 333479999998754321110 00 000 01345678889963 45655
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.+++|++
T Consensus 143 ~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i 215 (280)
T PRK13649 143 PF-----ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFV 215 (280)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999875 478988888775 4677899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.22 Aligned_cols=194 Identities=22% Similarity=0.300 Sum_probs=165.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
.+|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|.++... ++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~--~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEA--REDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHh--hCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999887 89999999876432 457999999999999899999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.+... . . .. ...+.+++.+||++..+..++ .||
T Consensus 101 nl~~~~~--~---------~---~~--------------------------~~~~~~l~~~gl~~~~~~~~~-----~LS 135 (257)
T PRK11247 101 NVGLGLK--G---------Q---WR--------------------------DAALQALAAVGLADRANEWPA-----ALS 135 (257)
T ss_pred HHHhccc--c---------h---HH--------------------------HHHHHHHHHcCChhHhcCChh-----hCC
Confidence 9987421 0 0 00 012456788899877776654 499
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999987656789888877654 6678899999999999999
Q ss_pred ecChh
Q 045902 427 QGPRE 431 (1472)
Q Consensus 427 ~G~~~ 431 (1472)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.95 Aligned_cols=201 Identities=23% Similarity=0.301 Sum_probs=167.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999999887 89999999987642 34589999999999999999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.+.....+.. ..+ . ...++.+++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gl~~~~~~~~~-----~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------KMQ----------R--------------LEIAHQMLKKVGLEGAEKRYIW-----QL 129 (255)
T ss_pred HHHHhHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCChhHhhCChh-----hC
Confidence 9998754321110 000 0 0013557889999877776655 49
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec--CCe
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS--EGE 423 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~--~G~ 423 (1472)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999998655578888887765 47788999999998 599
Q ss_pred EEEecChh
Q 045902 424 IVYQGPRE 431 (1472)
Q Consensus 424 iv~~G~~~ 431 (1472)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=316.62 Aligned_cols=194 Identities=24% Similarity=0.372 Sum_probs=161.1
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hcccceeEEeccCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETFARISGYCEQNDI 973 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~~~~~gyv~Q~~~ 973 (1472)
+++.+ |||++|++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 33445 99999999 9999999999999999999999876 358999999987531 123567899999999
Q ss_pred CCCCCCHHHHHHHHHHcCCC--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 974 HSPNVTIYESLLYSAWLRLP--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~l~~~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
+++.+|+.||+.+......+ .+..++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+
T Consensus 86 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 160 (214)
T cd03297 86 LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFS 160 (214)
T ss_pred cCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 88899999999876432211 123466778888887655543 34799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1052 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 161 ALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999875 899999999976 46678999999985 6777654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=331.98 Aligned_cols=221 Identities=23% Similarity=0.248 Sum_probs=174.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+...... . ...+...+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~--~-~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL--F-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc--c-ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 46778887665321100 0 001125799999999999999999999999999999999998763 589999999876
Q ss_pred Ch------hcccceeEEeccCC--CCCCCCCHHHHHHHHHHcC--CCch---HHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 957 KQ------ETFARISGYCEQND--IHSPNVTIYESLLYSAWLR--LPKD---MFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 957 ~~------~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~--~~~~---~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
.. ..+++.++|++|++ .+.|.+|+.+++....... .... ..+.++++.+++.. ..+.. +..
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p~~ 154 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRY-----PHM 154 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCC-----Ccc
Confidence 32 13456799999997 5788999999987654332 2222 34567777777742 33332 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
||||||||++||+||+.+|++|++||||+|||+.++..|+++|+++.++ |.|||++||+++ .+.+.+|++++|.+ |+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~-G~ 232 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL-GR 232 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999764 999999999976 35668999999985 79
Q ss_pred EEEEcCCC
Q 045902 1102 VIYAGPLG 1109 (1472)
Q Consensus 1102 v~~~g~~~ 1109 (1472)
++..|+..
T Consensus 233 ive~g~~~ 240 (327)
T PRK11308 233 CVEKGTKE 240 (327)
T ss_pred EEEECCHH
Confidence 99999853
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=328.02 Aligned_cols=215 Identities=23% Similarity=0.306 Sum_probs=173.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++... ....+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 366778776653100 0012469999999999999999999999999999999999877 4589999999876
Q ss_pred Ch----hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHH
Q 045902 957 KQ----ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 957 ~~----~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq 1027 (1472)
.. ...++.+||++|++. .+...||.|++.|..... .+. +..++++++.+++.+..++.. ..|||||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~ 149 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQ 149 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHH
Confidence 42 234567999999974 233569999998865432 222 245677888888887766654 4799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. + ..+|++++|++ |+++..|
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~-~~~d~v~~l~~-G~i~~~g 226 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-A-VEADRIIVMDS-GKVVMEG 226 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-H-hcCCEEEEEEC-CEEEEec
Confidence 99999999999999999999999999999999999999999764 9999999999873 4 45999999985 7888888
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 227 ~~ 228 (280)
T PRK13633 227 TP 228 (280)
T ss_pred CH
Confidence 75
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=323.32 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=170.1
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCC--
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHD-- 256 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d-- 256 (1472)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999887 8999999998765422 35699999996
Q ss_pred CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccc
Q 045902 257 LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADI 335 (1472)
Q Consensus 257 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 335 (1472)
.+.+.+||+||+.+...... .....+ . ...++.+++.+||+ ...|.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~---------~~~~~~----------~--------------~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLT---------SLDESE----------Q--------------KARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhc---------CCCHHH----------H--------------HHHHHHHHHHcCCChhhhhC
Confidence 46678999999976432100 000000 0 01134578889996 56665
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ ..+.+++|+
T Consensus 147 ~~~-----~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~ 220 (265)
T TIGR02769 147 LPR-----QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQR 220 (265)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcE
Confidence 554 59999999999999999999999999999999999999999999998875578888887765 467789999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=327.43 Aligned_cols=207 Identities=27% Similarity=0.347 Sum_probs=170.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC--CC---CCceEEEEcCCCC-CC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE--FV---PQRTCAYISQHDL-HH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~---~~~~~~yv~Q~d~-~~ 259 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.. .. .++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999887 8999999998742 11 2357999999863 34
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
...||+||+.+.....+.. ..+ . ...++.+++.+||.+..|+.+++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------EDE----------V--------------RKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------HHH----------H--------------HHHHHHHHHHCCChhhhhCCccc
Confidence 5689999998754321110 000 0 00235678899998877776654
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.+++|++++|
T Consensus 142 -----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l 215 (283)
T PRK13636 142 -----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVM 215 (283)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999875588988887765 4677899999999
Q ss_pred cCCeEEEecChhHHHH
Q 045902 420 SEGEIVYQGPREYVLD 435 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~~ 435 (1472)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988653
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.20 Aligned_cols=212 Identities=24% Similarity=0.359 Sum_probs=167.6
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~ 954 (1472)
+.++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 4 ISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred EEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 56777766542 246999999999999999999999999999999999975421 24899999998
Q ss_pred cCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cc---hHHHHHHHHHccccc-ccccccCCCCCCCC
Q 045902 955 PKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PK---DMFVEEVMELVEMKA-LRNSLVGLPGVDGL 1023 (1472)
Q Consensus 955 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~---~~~~~~v~~~l~l~~-~~~~~~~~~~~~~L 1023 (1472)
++.. ...++.++|++|++.+++ .|+.||+.+....+. +. ++.++++++.+++.+ +.+. ... .+..|
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~-~~~~L 147 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR-LKK-SALGL 147 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH-Hhc-CCCCC
Confidence 7642 234567899999988877 899999988654332 11 134556666666532 1111 111 23579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |+++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~ 224 (250)
T PRK14240 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GEIV 224 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999954 799999999975 47788999999986 7888
Q ss_pred EEcCC
Q 045902 1104 YAGPL 1108 (1472)
Q Consensus 1104 ~~g~~ 1108 (1472)
..|+.
T Consensus 225 ~~~~~ 229 (250)
T PRK14240 225 EFGDT 229 (250)
T ss_pred EeCCH
Confidence 88864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=321.17 Aligned_cols=206 Identities=25% Similarity=0.365 Sum_probs=171.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC----------------CCceE
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV----------------PQRTC 249 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~----------------~~~~~ 249 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++++ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 36999999999999999999999999999999999999887 899999999875421 14579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhhc-cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhC
Q 045902 250 AYISQHDLHHGEMTVRETLDFSGRC-LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG 328 (1472)
Q Consensus 250 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 328 (1472)
+|++|++.+++.+||.||+.++... .+.. . .+.+ ..++.+++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~----------~~~~--------------~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R----------AEAE--------------KRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H----------HHHH--------------HHHHHHHHHcC
Confidence 9999999999999999999875321 0000 0 0000 01345788899
Q ss_pred CcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch
Q 045902 329 LDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE 408 (1472)
Q Consensus 329 L~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 408 (1472)
+++..+..+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. +
T Consensus 136 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~ 209 (252)
T TIGR03005 136 LADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-F 209 (252)
T ss_pred ChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-H
Confidence 987776655 4599999999999999999999999999999999999999999999987755788888887764 6
Q ss_pred HHhccCeEEEecCCeEEEecChhHHH
Q 045902 409 TYDLFDDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 409 ~~~~fD~iilL~~G~iv~~G~~~~~~ 434 (1472)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 77899999999999999999987763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=312.76 Aligned_cols=185 Identities=26% Similarity=0.330 Sum_probs=159.8
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 35699999999999999999999999999999999998763 58999999987532 334567899999998888999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
++|++.+.... ..++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 90 v~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 162 (201)
T cd03231 90 VLENLRFWHAD--HSDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA 162 (201)
T ss_pred HHHHHHhhccc--ccHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 99999875322 13456788899999987666543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1060 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1060 ~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
.+++.|+++.++|+|+|++||++. +....+|+++.+
T Consensus 163 ~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 163 RFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999998877999999999976 577788888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=332.71 Aligned_cols=218 Identities=16% Similarity=0.245 Sum_probs=171.4
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--CeeEEEEEEcCcc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GYIEGSISISGYP 955 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~G~~ 955 (1472)
+.++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 5677776655321 1235699999999999999999999999999999999998652 2458999999987
Q ss_pred CCh---hc----ccceeEEeccCCC--CCCCCCHHHHHHHHHHc---CC---Cc----hHHHHHHHHHcccccccccccC
Q 045902 956 KKQ---ET----FARISGYCEQNDI--HSPNVTIYESLLYSAWL---RL---PK----DMFVEEVMELVEMKALRNSLVG 1016 (1472)
Q Consensus 956 ~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l---~~---~~----~~~~~~v~~~l~l~~~~~~~~~ 1016 (1472)
+.. .. +++.++|++|++. +.|.+||.+++.+.... .. .. ...+.++++.++|.+..+....
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 532 11 1346899999975 56889999999753221 00 11 1345677888887643222212
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEE
Q 045902 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1017 ~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
. +..|||||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++
T Consensus 155 ~--p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 155 F--PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred C--chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 2 3579999999999999999999999999999999999999999999999875 899999999976 46678999999
Q ss_pred EecCcEEEEEcCC
Q 045902 1096 MKRGGHVIYAGPL 1108 (1472)
Q Consensus 1096 l~~gg~v~~~g~~ 1108 (1472)
|.+ |++++.|+.
T Consensus 232 m~~-G~ive~g~~ 243 (330)
T PRK15093 232 LYC-GQTVETAPS 243 (330)
T ss_pred EEC-CEEEEECCH
Confidence 985 799999975
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=318.24 Aligned_cols=195 Identities=28% Similarity=0.403 Sum_probs=166.1
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
+|+|+|++|+|||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999876 458999999987643 1234678999999999999999999
Q ss_pred HHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 984 LLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 984 l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
+.+...... ... ..+.++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~ 166 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHH
Confidence 987643321 111 23566788888876666553 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1060 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1060 ~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.+.+.|++++.+ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 167 ~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 167 KLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999998765 999999999976 46778999999985 788888875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=355.09 Aligned_cols=214 Identities=21% Similarity=0.332 Sum_probs=178.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTF-------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEe-------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 36677776654 23569999999999999999999999999999999999876433589999999876
Q ss_pred Chh----cccceeEEeccCCCCCCCCCHHHHHHHHHHcC----CCch---HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 957 KQE----TFARISGYCEQNDIHSPNVTIYESLLYSAWLR----LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 957 ~~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~----~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
... ..++.+||++|++.+++.+||+|++.+....+ .+.+ ..++++++.+++.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 421 12456899999998899999999998865322 1111 34677888888876666553 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++ ++.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999976 46678999999985 789898
Q ss_pred cCCCc
Q 045902 1106 GPLGR 1110 (1472)
Q Consensus 1106 g~~~~ 1110 (1472)
|+..+
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 88754
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=336.95 Aligned_cols=195 Identities=25% Similarity=0.409 Sum_probs=169.3
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC------C-CCceEEEEcCCCCCCCCCC
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF------V-PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~------~-~~~~~~yv~Q~d~~~~~lT 263 (1472)
|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|+++... . .++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999887 89999999987531 1 2467999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.|+.+. . .. ..++.+++.+||++..|..++
T Consensus 93 v~enl~~~~~~-----------~--~~---------------------------~~~~~~l~~~gl~~~~~~~~~----- 127 (352)
T PRK11144 93 VRGNLRYGMAK-----------S--MV---------------------------AQFDKIVALLGIEPLLDRYPG----- 127 (352)
T ss_pred HHHHHHhhhhh-----------h--hH---------------------------HHHHHHHHHcCCchhhhCCcc-----
Confidence 99999875310 0 00 013557889999888777665
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 49999999999999999999999999999999999999999999999876678888887765 47889999999999999
Q ss_pred EEEecChhHHH
Q 045902 424 IVYQGPREYVL 434 (1472)
Q Consensus 424 iv~~G~~~~~~ 434 (1472)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999998874
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=287.00 Aligned_cols=195 Identities=28% Similarity=0.422 Sum_probs=165.1
Q ss_pred cccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---h----cccceeEEeccCC
Q 045902 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---E----TFARISGYCEQND 972 (1472)
Q Consensus 900 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~----~~~~~~gyv~Q~~ 972 (1472)
.....||++|++.|++||-+||+|||||||||||-+|+|+.. +.+|+|.+.|++... + -..+.+|+|+|..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 455789999999999999999999999999999999999876 458999999998632 1 2346799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCC--ch--HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccC
Q 045902 973 IHSPNVTIYESLLYSAWLRLP--KD--MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048 (1472)
Q Consensus 973 ~~~~~lTv~e~l~~~~~l~~~--~~--~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDE 1048 (1472)
.+.|++|..||+.....++.. .+ ....+.++.+||.+ ++...| .+|||||+|||+||||++..|+|||.||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~---Rl~HyP--~qLSGGEQQRVAiARAfa~~P~vLfADE 172 (228)
T COG4181 98 HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK---RLTHYP--AQLSGGEQQRVALARAFAGRPDVLFADE 172 (228)
T ss_pred eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc---ccccCc--cccCchHHHHHHHHHHhcCCCCEEeccC
Confidence 999999999999988888762 22 23456677777654 333344 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1049 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1049 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
||-+||..+...|.+++-.+.++ |.|.|++||||. +...|||.+-|.. |+++.
T Consensus 173 PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 99999999999999999998654 999999999975 6788999999986 67653
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=326.94 Aligned_cols=213 Identities=24% Similarity=0.334 Sum_probs=173.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCe-eEEEEEEcCcc
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY-IEGSISISGYP 955 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~-~~G~i~i~G~~ 955 (1472)
.+.++|+++..+. ..+.+|+|||++|++||++||+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4677887765421 12459999999999999999999999999999999999876421 13999999988
Q ss_pred CCh---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHH
Q 045902 956 KKQ---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq 1027 (1472)
... ...++.+||++|++. .++..||.||+.|...... ... +.++++++.+++.+..+... +.|||||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~ 148 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQ 148 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHH
Confidence 643 234567899999974 5678999999987643322 221 34567788888876666543 5799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + +.||++++|++ |+++..|
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~~~g 225 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLLAQG 225 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEeC
Confidence 99999999999999999999999999999999999999999865 8999999999763 4 67999999985 7899888
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 226 ~~ 227 (282)
T PRK13640 226 SP 227 (282)
T ss_pred CH
Confidence 75
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=335.97 Aligned_cols=199 Identities=24% Similarity=0.434 Sum_probs=169.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-------CCceEEEEcCCCCCCCCCC
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-------PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 263 (1472)
|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999887 899999999875321 2467999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.|+.+... ..+. ...++.+++.+||++..|+.+.+
T Consensus 92 v~enl~~~~~~~~------------~~~~------------------------~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRAR------------PSER------------------------RISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccC------------hhHH------------------------HHHHHHHHHHcCChhHhcCChhh----
Confidence 9999988643110 0000 00135678899999888876654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999876678888888765 47788999999999999
Q ss_pred EEEecChhHHH
Q 045902 424 IVYQGPREYVL 434 (1472)
Q Consensus 424 iv~~G~~~~~~ 434 (1472)
+++.|+.+++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=315.53 Aligned_cols=195 Identities=23% Similarity=0.375 Sum_probs=162.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++++ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 36999999999999999999999999999999999999887 8999999998765421 35699999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.+.....+.. ..+ . ....+.+++.+||++..++.++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~- 135 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP----------PRE----------I--------------RKRVPAALELVGLSHKHRALPA- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCHHHhhCChh-
Confidence 9999999998864322110 000 0 0013457888899887776665
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|
T Consensus 136 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l 209 (214)
T cd03292 136 ----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIAL 209 (214)
T ss_pred ----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999865 478888887765 4677789999999
Q ss_pred cCCeE
Q 045902 420 SEGEI 424 (1472)
Q Consensus 420 ~~G~i 424 (1472)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=319.65 Aligned_cols=203 Identities=25% Similarity=0.424 Sum_probs=166.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 36999999999999999999999999999999999999887 8999999998765432 3569999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh-CCcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL-GLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~ 340 (1472)
+||+||+.++..... . + +. +. ..+.+++.+ ++.+..++.+
T Consensus 95 ~tv~~~l~~~~~~~~---~-~---~~---------------~~--------------~~~~~l~~~~~l~~~~~~~~--- 135 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D---QF---------------QE--------------RIKWVYELFPRLHERRIQRA--- 135 (237)
T ss_pred CcHHHHHHHhhhccC---h-h---HH---------------HH--------------HHHHHHHHHHHHHHHHhCch---
Confidence 999999987532110 0 0 00 00 012344555 3554445444
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
..|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|+
T Consensus 136 --~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 211 (237)
T PRK11614 136 --GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLE 211 (237)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEe
Confidence 45999999999999999999999999999999999999999999999876 478988887664 47889999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=317.68 Aligned_cols=202 Identities=28% Similarity=0.317 Sum_probs=166.4
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHH
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETL 268 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 268 (1472)
|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999887 8999999998865433 248999999999999999999
Q ss_pred HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChH
Q 045902 269 DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGG 348 (1472)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGG 348 (1472)
.+........ ....+ . ...++.+++.+||++..++.++. ||||
T Consensus 76 ~~~~~~~~~~--------~~~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSKSE----------R--------------RAIVEEHIALVGLTEAADKRPGQ-----LSGG 118 (230)
T ss_pred HHHHHhcccC--------CCHHH----------H--------------HHHHHHHHHHcCCHHHHcCChhh-----CCHH
Confidence 8753210000 00000 0 00134578889998877776654 9999
Q ss_pred HHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEec
Q 045902 349 QKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428 (1472)
Q Consensus 349 qrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G 428 (1472)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999987756789888887654 678899999999999999988
Q ss_pred ChhHH
Q 045902 429 PREYV 433 (1472)
Q Consensus 429 ~~~~~ 433 (1472)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=360.13 Aligned_cols=206 Identities=21% Similarity=0.295 Sum_probs=172.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 263 (1472)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999998 8999999999987654 4789999999999875 9
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
++|||.++.. . +++++.++.+.+. .+..++. |++..||.+|+ .+.
T Consensus 431 i~~NI~~~~~---~--------------------~d~~i~~a~~~~g---------l~~~i~~--lp~Gldt~i~e-~g~ 475 (592)
T PRK10790 431 FLANVTLGRD---I--------------------SEEQVWQALETVQ---------LAELARS--LPDGLYTPLGE-QGN 475 (592)
T ss_pred HHHHHHhCCC---C--------------------CHHHHHHHHHHcC---------cHHHHHh--ccccccccccC-CCC
Confidence 9999988521 0 1112222222221 1222332 45667999985 667
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
.||||||||++|||||+.+|++++||||||+||+.++..|.+.|+++.. ++|+|+..|++ +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999998753 68999888887 5667899999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999863
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=363.92 Aligned_cols=209 Identities=24% Similarity=0.406 Sum_probs=174.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++... +++++|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 588999976431 2346999999999999999999999999999999999987 4 389999999886
Q ss_pred C---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHH
Q 045902 957 K---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgG 1026 (1472)
. .+.+++.++||+|++.++.. |++||+.++. ....++.++++++..++.+. .|+.+|..| .+||||
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G-~~LSGG 489 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN--PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA-AGLSVG 489 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC--CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC-CCCCHH
Confidence 4 35678889999999988864 9999998852 11234566677777666543 245566543 579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +++|+|+++|+++ ..+.+|++++|++ |+++..|
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~-G~i~e~G 565 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD-GQIVQQG 565 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999999999999999999999999885 5799999999974 5678999999985 7899988
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 566 ~~ 567 (588)
T PRK11174 566 DY 567 (588)
T ss_pred CH
Confidence 74
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.88 Aligned_cols=211 Identities=22% Similarity=0.292 Sum_probs=170.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC--eeEEEEEEcCc
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG--YIEGSISISGY 954 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~--~~~G~i~i~G~ 954 (1472)
.+.++|+++.+ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 56778877653 135899999999999999999999999999999999987641 15899999998
Q ss_pred cCChhcc-cceeEEeccCCC--CCCCCCHHHHHHHHHHc-CCC-chHHHHHHHHHcccccc---cccccCCCCCCCCCHH
Q 045902 955 PKKQETF-ARISGYCEQNDI--HSPNVTIYESLLYSAWL-RLP-KDMFVEEVMELVEMKAL---RNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 955 ~~~~~~~-~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l-~~~-~~~~~~~v~~~l~l~~~---~~~~~~~~~~~~LSgG 1026 (1472)
++..... ++.++|++|++. +.+..|+.+++.+.+.. ... .+..++++++.+++.+. .+.. +..||||
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G 144 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLY-----PFEMSGG 144 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcC-----CcccCHH
Confidence 8643222 356899999974 44668999988664332 222 22456778888887652 2332 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++..
T Consensus 145 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~ 222 (254)
T PRK10418 145 MLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQ 222 (254)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 899999999976 46678999999985 789988
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 223 ~~~ 225 (254)
T PRK10418 223 GDV 225 (254)
T ss_pred cCH
Confidence 875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=321.94 Aligned_cols=206 Identities=32% Similarity=0.469 Sum_probs=170.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999887 8999999998765432 35699999998888889
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.+........ .. +. ....+.+++.+||++..|+.+++
T Consensus 92 tv~e~l~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~~--- 134 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS----------RA----------ED--------------DALVAAALAQVDLAHLAGRDYPQ--- 134 (258)
T ss_pred CHHHHHHhhhcccCCC----------cH----------HH--------------HHHHHHHHHHcCCHhHhcCCccc---
Confidence 9999998753211100 00 00 00134578889998777776654
Q ss_pred CCCChHHHHHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 343 RGISGGQKKRVTTGEMLV------GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|
T Consensus 135 --LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i 211 (258)
T PRK13548 135 --LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRI 211 (258)
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEE
Confidence 9999999999999999 599999999999999999999999999998744678888887765 4677899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=318.51 Aligned_cols=206 Identities=21% Similarity=0.308 Sum_probs=162.7
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEEcCeeCCCC-----CCCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL--RVSGRVTYCGHELTEF-----VPQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 259 (1472)
.+|+|+|+.+++||+++|+|||||||||||++|+|.++++. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999987621 1379999999987421 1245799999998887
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCC----cccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGL----DICADI 335 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL----~~~~dt 335 (1472)
+ +||+||+.|.....+.... .+.+ ..++..++.+|+ ++..|+
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~-------------------~~~~--------------~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK-------------------KKLD--------------EIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH-------------------HHHH--------------HHHHHHHHHhCCchhhHHHHhC
Confidence 4 8999999886432211000 0000 012345566665 233455
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.+ +.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++.+++|+
T Consensus 147 ~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~~-~~~~~~d~ 218 (254)
T PRK14273 147 NA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNMQ-QAGRISDR 218 (254)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCE
Confidence 44 45999999999999999999999999999999999999999999999853 578888777654 67789999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
+++|++|+++.+|+.+++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=320.81 Aligned_cols=213 Identities=24% Similarity=0.307 Sum_probs=169.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G 953 (1472)
-+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWY-------------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEE-------------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 35677776554 2346999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
.++.. ...++.++|++|++.+++ .|++||+.|...... ... ..++++++.+++.. +.+.. . .....
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~~~ 147 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL-K-KSALK 147 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh-h-CCccc
Confidence 87632 234567899999998887 899999987654321 111 23556777777642 11211 1 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 224 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDL 224 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeE
Confidence 999999999999999999999999999999999999999999999976 689999999976 56788999999985 789
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
++.|+.
T Consensus 225 ~~~~~~ 230 (251)
T PRK14270 225 IEFNKT 230 (251)
T ss_pred EEeCCH
Confidence 888875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=312.61 Aligned_cols=185 Identities=22% Similarity=0.298 Sum_probs=155.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCCH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 469999999999999999999999999999999999877 458999999987532 2345678999999988899999
Q ss_pred HHHHHHHHHcCC-CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 981 YESLLYSAWLRL-PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 981 ~e~l~~~~~l~~-~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
.|++.+...... ..+..++++++.+++.+..++.. ..||||||||++||+||+++|++|+|||||+|||+.++.
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 166 (204)
T PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVA 166 (204)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 999987654432 22356778899999877666543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEecCccHHHHHhhC-eEEEE
Q 045902 1060 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLM 1096 (1472)
Q Consensus 1060 ~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D-~v~~l 1096 (1472)
.+++.|++++++|+|||++||+++ ....|+ |++.+
T Consensus 167 ~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~~~~~ 202 (204)
T PRK13538 167 RLEALLAQHAEQGGMVILTTHQDL--PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHCCCEEEEEecChh--hhccCCceEEec
Confidence 999999999877899999999975 343454 44443
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=317.88 Aligned_cols=200 Identities=23% Similarity=0.367 Sum_probs=166.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 263 (1472)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5899999999999999999999999999999999999887 8999999998764322 357999999988776 69
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccccccCccC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVGNEMR 342 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~~ 342 (1472)
|+||+.+.....+ . .. ..++.+++.+||+ +..++.+
T Consensus 93 v~e~l~~~~~~~~--~---------~~---------------------------~~~~~~l~~~~l~~~~~~~~~----- 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E---------KN---------------------------VDVEYYLSIVGLNKEYATRDV----- 129 (241)
T ss_pred HHHHHhcchhhcC--c---------HH---------------------------HHHHHHHHHcCCCHHHhhCCc-----
Confidence 9999976432110 0 00 0124467888886 4555544
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++++..+.|+|++.|++. ++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCC
Confidence 4599999999999999999999999999999999999999999999987655788888877654 677899999999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
+++..|+.+++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999987763
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=313.91 Aligned_cols=215 Identities=23% Similarity=0.309 Sum_probs=174.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-C-CCCceeEEEEcCeeCCCCCC-------CceEEEEcCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD-K-SLRVSGRVTYCGHELTEFVP-------QRTCAYISQH 255 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 255 (1472)
..++++|||+.+++||+++|+|.|||||||+.++|.|+++ + ...++|+|.++|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4 33467999999998765543 2579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccc
Q 045902 256 D--LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICA 333 (1472)
Q Consensus 256 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 333 (1472)
+ .+.|.+||.+.+.-..+...... ++.|. ...+..+|+..||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~~ea------------------------~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------SKKEA------------------------KERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------hhHHH------------------------HHHHHHHHHHcCCCCHH
Confidence 6 77899999998865544211100 00000 01134578888888532
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhcc
Q 045902 334 DIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413 (1472)
Q Consensus 334 dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~f 413 (1472)
. +-+.++..|||||||||.||.||+.+|++|+.|||||+||..++.+|++.|+++.++.+.++|+..| ...-+.+++
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITH-Dl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH-DLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhc
Confidence 1 2246777899999999999999999999999999999999999999999999999877888777655 566788999
Q ss_pred CeEEEecCCeEEEecChhHHH
Q 045902 414 DDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 414 D~iilL~~G~iv~~G~~~~~~ 434 (1472)
|||+||+.|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999998874
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=318.70 Aligned_cols=197 Identities=25% Similarity=0.329 Sum_probs=161.9
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC--eeEEEEEEcCccCChhcc-cceeEEeccCCC--CCCCCC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG--YIEGSISISGYPKKQETF-ARISGYCEQNDI--HSPNVT 979 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~--~~~G~i~i~G~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 979 (1472)
+|+|+|+++++|++++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999987631 158999999988654322 357899999984 557789
Q ss_pred HHHHHHHHHHcC-CCch---HHHHHHHHHccccc---ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 980 IYESLLYSAWLR-LPKD---MFVEEVMELVEMKA---LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 980 v~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~---~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
+.|++.+..... .... ..++++++.+++.+ ..+.. +..|||||||||+||++|+.+|+||+|||||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEPt~~ 155 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEPTTD 155 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999987654322 1111 34667788888763 33333 347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 156 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 156 LDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999764 899999999976 56678999999985 788888874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=311.75 Aligned_cols=221 Identities=24% Similarity=0.325 Sum_probs=190.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
..-++|+|+.++.||+..|||-||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|+..+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 34589999999999999999999999999999999999998 9999999999877653 3679999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+|..||.||..|+.+.+|..... +++ ...+.|+..||+..++.++.
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~e-------r~~---------------------------~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKAE-------REE---------------------------RALEALELVGLEGYADKYPN 163 (386)
T ss_pred ccchhHhhhhhcceeecCCCHHH-------HHH---------------------------HHHHHHHHcCchhhhhcCcc
Confidence 99999999999999988864211 111 13457889999998886664
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
.||||+||||.+||||..+|+||+||||+|+|||--+.++.+.|.++.+..++|+|... |...|..++.|||.+
T Consensus 164 -----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit-HDLdEAlriG~rIai 237 (386)
T COG4175 164 -----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT-HDLDEALRIGDRIAI 237 (386)
T ss_pred -----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHHhccceEEE
Confidence 59999999999999999999999999999999999999999999999888889988865 567899999999999
Q ss_pred ecCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHh
Q 045902 419 LSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEV 457 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~~~F~~~G~~cp~~~~~adfl~ev 457 (1472)
|.+|+||..|+++|++. .|...-++||..++
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999974 34444455666543
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=321.69 Aligned_cols=213 Identities=22% Similarity=0.310 Sum_probs=169.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--C-eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 467888876542 24699999999999999999999999999999999997642 1 1489999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHcccccc-cccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMKAL-RNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~~~-~~~~~~~~~~~~ 1022 (1472)
.++.. ...++.+||++|++.+++. |++||+.+...... ..+ ..++++++.+++.+. .+.+ . .....
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~-~~~~~ 155 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL-H-TQALS 155 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhh-h-CCccc
Confidence 87631 2345679999999888875 99999987654332 112 234566777776432 1111 1 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i 232 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GEL 232 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999965 799999999976 47788999999985 789
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 233 ~~~g~~ 238 (259)
T PRK14274 233 VECNDT 238 (259)
T ss_pred EEECCH
Confidence 988875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=314.66 Aligned_cols=194 Identities=27% Similarity=0.398 Sum_probs=162.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++++ +|+|.++|+++..... ++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 36999999999999999999999999999999999999887 8999999998865431 35799999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.+.....+.. .. +. ....+.+++.+||++..++.+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~- 136 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK----------ER----------EI--------------QRRVGAALRQVGLEHKADAFPE- 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------HH----------HH--------------HHHHHHHHHHcCChhhhhCChh-
Confidence 9999999998864322110 00 00 0013557888899876676665
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|++++.|++ .++.+++|++++|
T Consensus 137 ----~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l 210 (214)
T TIGR02673 137 ----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIIL 210 (214)
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEe
Confidence 4999999999999999999999999999999999999999999999865 478888888765 4777899999999
Q ss_pred cCCe
Q 045902 420 SEGE 423 (1472)
Q Consensus 420 ~~G~ 423 (1472)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=320.56 Aligned_cols=221 Identities=22% Similarity=0.295 Sum_probs=172.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++++ +|+|.++|.++....+ +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 36999999999999999999999999999999999999887 8999999998765432 2358999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.++....... +........ ....+. + +. ....++.+++.+||++..++.+++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~---~~~~~~-~-~~-----------~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKT---PAFRRA-E-SE-----------ALDRAATWLERVGLLEHANRQAGN-- 153 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhccc---cccccc-h-hH-----------HHHHHHHHHHhCChhhhhhCChhh--
Confidence 99999998854311000 000000000 000000 0 00 001235578889998777766654
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++
T Consensus 154 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 154 ---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998765578888887765 477789999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=366.63 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=172.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|+ .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 45899999999999999999999999999999999999998 8999999999987754 478999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.++... . +++++.+..+.+.+ +..++ .|++..||.+| +.+
T Consensus 554 TI~eNi~~~~~~---~-------------------~~~~i~~a~~~~~l---------~~~i~--~lp~gl~T~i~-e~G 599 (694)
T TIGR03375 554 TLRDNIALGAPY---A-------------------DDEEILRAAELAGV---------TEFVR--RHPDGLDMQIG-ERG 599 (694)
T ss_pred hHHHHHhCCCCC---C-------------------CHHHHHHHHHHcCh---------HHHHH--hCcccccceec-CCC
Confidence 999999875210 0 11122222222111 11222 35667899998 467
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..||||||||++||||++.+|++++||||||+||+.++..|.+.|+++. .++|+|++.|++ ++.+.+|+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 8899999999999999999999999999999999999999999999875 368998888877 466899999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=314.72 Aligned_cols=196 Identities=30% Similarity=0.466 Sum_probs=163.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCCH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 264 (1472)
++|+|+|+.+++| +++|+|||||||||||++|+|.++++ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 6999999999999 99999999999999999999999887 899999998875432 13579999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.+.....+.. + .+. ...++.+++.+||++..|+.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~----------~~~--------------~~~~~~~l~~~~l~~~~~~~~~~----- 130 (211)
T cd03264 90 REFLDYIAWLKGIP----------S----------KEV--------------KARVDEVLELVNLGDRAKKKIGS----- 130 (211)
T ss_pred HHHHHHHHHHhCCC----------H----------HHH--------------HHHHHHHHHHCCCHHHHhCchhh-----
Confidence 99998754322110 0 000 00135578889998777776654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ +.|+|++.|++ .++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875 47877777655 467789999999999999
Q ss_pred EEec
Q 045902 425 VYQG 428 (1472)
Q Consensus 425 v~~G 428 (1472)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=316.20 Aligned_cols=204 Identities=22% Similarity=0.260 Sum_probs=166.7
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC----CCCceeEEEEcCeeCCCCCC-CceEEEEcCCCC--CCC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK----SLRVSGRVTYCGHELTEFVP-QRTCAYISQHDL--HHG 260 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~----~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 260 (1472)
+|+|+|+.+++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 8999999998765432 257999999974 556
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc---cccccc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI---CADIMV 337 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~---~~dt~v 337 (1472)
.+|+.|++.+.....+.. .... ...++.+++.+||++ ..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~~~~-------------------------~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------SKQA-------------------------RALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------HHHH-------------------------HHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999997653221100 0000 011355788889873 345444
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
..|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++++..++|+|++.|++. ++..++|+++
T Consensus 124 -----~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 197 (230)
T TIGR02770 124 -----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVA 197 (230)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4599999999999999999999999999999999999999999999987655788888877654 7778999999
Q ss_pred EecCCeEEEecChhHHH
Q 045902 418 LLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~ 434 (1472)
+|++|+++..|+.+++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=365.52 Aligned_cols=206 Identities=26% Similarity=0.393 Sum_probs=167.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|+ .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999998 8999999999987654 468999999998885 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.++.... +++++.+..+.+.+ +..++ .+++..||.+|+ .+
T Consensus 570 TIreNI~~g~~~~----------------------~~e~i~~al~~a~l---------~~~i~--~lp~GldT~ige-~G 615 (711)
T TIGR00958 570 SVRENIAYGLTDT----------------------PDEEIMAAAKAANA---------HDFIM--EFPNGYDTEVGE-KG 615 (711)
T ss_pred CHHHHHhcCCCCC----------------------CHHHHHHHHHHcCC---------HHHHH--hCCCccCCcccC-CC
Confidence 9999998753210 01122222222111 12222 245667999984 57
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..||||||||++||||++++|+|++||||||+||+.++..+.+ .. ...++|+|+..|++ ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl--~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRL--STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccH--HHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999988 22 22578999988876 466789999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999864
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=329.62 Aligned_cols=217 Identities=18% Similarity=0.225 Sum_probs=168.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEEcCeeCCCCCC-------CceEEEEcCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL-RVSGRVTYCGHELTEFVP-------QRTCAYISQHDL 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 257 (1472)
..+|+|||+.|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 569999999999999999999999999999999999986321 137999999998865432 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhccCC-CchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc
Q 045902 258 --HHGEMTVRETLDFSGRCLGV-GTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD 334 (1472)
Q Consensus 258 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 334 (1472)
+.|.+||.+++.+....... +... .+. .+. ...+..+++.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~------~~~---------~~~--------------~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW------QRF---------GWR--------------KRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc------ccH---------HHH--------------HHHHHHHHHHCCCCChHH
Confidence 67889999999753221000 0000 000 000 012356789999974321
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
+-+..+..|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd-l~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD-LQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHHhCC
Confidence 11234456999999999999999999999999999999999999999999999987668888887765 457778999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 045902 415 DIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 415 ~iilL~~G~iv~~G~~~~~~ 434 (1472)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=318.58 Aligned_cols=211 Identities=24% Similarity=0.365 Sum_probs=170.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 36999999999999999999999999999999999999887 8999999998765432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.+....... .+...... +.++ ....++.+++.+|+++..++.+++
T Consensus 92 ~tv~~nl~~~~~~~~~--~~~~~~~~----------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (242)
T TIGR03411 92 LTVFENLELALPRDKS--VFASLFFR----------LSAE--------------EKDRIEEVLETIGLADEADRLAGL-- 143 (242)
T ss_pred CCHHHHHHHhhhcccc--cccccccc----------cHHH--------------HHHHHHHHHHHcCCchhhcCChhh--
Confidence 9999999885431100 00000000 0000 001235678889998877766654
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.+++|++++|++
T Consensus 144 ---LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 144 ---LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQ 217 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999865 57888887765 477789999999999
Q ss_pred CeEEEecChhHH
Q 045902 422 GEIVYQGPREYV 433 (1472)
Q Consensus 422 G~iv~~G~~~~~ 433 (1472)
|+++++|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=314.16 Aligned_cols=197 Identities=29% Similarity=0.390 Sum_probs=168.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999887 899999999875422 35799999999999999999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.+.....+. ++ ..+..+++.+||++..|..+++ |
T Consensus 89 ~~~~~~~~~~~~--------------------~~------------------~~~~~~l~~~~l~~~~~~~~~~-----L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------PD------------------SRIDEVLNIVDLTNTGKKKAKQ-----F 125 (223)
T ss_pred HHHHHHHHHcCC--------------------CH------------------HHHHHHHHHcCCcHHHhhhHhh-----C
Confidence 999875432110 00 0124567889998877766654 9
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEE
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv 425 (1472)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+.+|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999865 5788888888764 677899999999999999
Q ss_pred EecChh
Q 045902 426 YQGPRE 431 (1472)
Q Consensus 426 ~~G~~~ 431 (1472)
+.|+..
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=323.93 Aligned_cols=218 Identities=19% Similarity=0.261 Sum_probs=172.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+..+.. ....+.+.+|+|+|++|++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 667888766531100 000012469999999999999999999999999999999999877 45899999998764
Q ss_pred h---hcccceeEEeccCCC--CCCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHcccc-cccccccCCCCCCCCCHH
Q 045902 958 Q---ETFARISGYCEQNDI--HSPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgG 1026 (1472)
. ...++.++|++|++. +++.+|+.|++.+....+. ... +.++++++.+++. +..+.. +..||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 153 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPG 153 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHH
Confidence 2 123356899999975 5678899999987654431 221 3456777888773 444443 3479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |+++..
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~ 231 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVER 231 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 899999999976 46678999999985 788888
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 232 ~~~ 234 (267)
T PRK15112 232 GST 234 (267)
T ss_pred CCH
Confidence 874
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=320.18 Aligned_cols=213 Identities=27% Similarity=0.343 Sum_probs=167.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|++|++||++||+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 366778776542 2469999999999999999999999999999999999732 21 2479999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch----HHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD----MFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~----~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ... ..++++++.+++.. +.+.. . ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~~~ 148 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL-H-DSALG 148 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHH-h-cCccc
Confidence 87531 234567999999988877 899999987643321 111 23455667776532 11111 1 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i 225 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDL 225 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999965 699999999976 57788999999985 788
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
++.|+.
T Consensus 226 ~~~g~~ 231 (252)
T PRK14239 226 IEYNDT 231 (252)
T ss_pred EEeCCH
Confidence 888875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=318.02 Aligned_cols=206 Identities=24% Similarity=0.392 Sum_probs=166.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEEcCeeCCCCC-----CCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTEFV-----PQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 259 (1472)
.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999998753 123799999999876421 135799999999888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc----ccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD----ICADI 335 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 335 (1472)
+ +||+||+.+..+..+... .. +. ...++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~---------~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD---------KK----------EL--------------DEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC---------HH----------HH--------------HHHHHHHHHHcCCCcchhhHhhC
Confidence 8 999999987643221000 00 00 00134567888887 55555
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++.+++|+
T Consensus 141 ~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~ 212 (247)
T TIGR00972 141 SAL-----GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDR 212 (247)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCE
Confidence 544 5999999999999999999999999999999999999999999999875 378888777654 67789999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
+++|++|+++++|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=356.46 Aligned_cols=207 Identities=25% Similarity=0.407 Sum_probs=170.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 35899999999999999999999999999999999999998 9999999999987654 467999999988876 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++||+.++..- .+++++.+..+.+.+ +..+ -. ++..||.+|+ .+
T Consensus 429 ti~~Ni~~~~~~----------------------~~~~~i~~al~~~~l---------~~~i--~~-p~GldT~vge-~g 473 (574)
T PRK11160 429 TLRDNLLLAAPN----------------------ASDEALIEVLQQVGL---------EKLL--ED-DKGLNAWLGE-GG 473 (574)
T ss_pred cHHHHhhcCCCc----------------------cCHHHHHHHHHHcCC---------HHHH--cC-ccccCchhcC-CC
Confidence 999999875310 011122222222211 1111 12 5567999984 57
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
+.||||||||++||||++.+|++|+|||||++||+.++..+.+.|+++. .++|+|++.|+++ ....+|+|++|++|
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~--~~~~~d~i~~l~~G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLT--GLEQFDRICVMDNG 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh--HHHhCCEEEEEeCC
Confidence 7899999999999999999999999999999999999999999999875 4789999888874 45679999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
++++.|+++++.+
T Consensus 550 ~i~~~g~~~~l~~ 562 (574)
T PRK11160 550 QIIEQGTHQELLA 562 (574)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=324.07 Aligned_cols=205 Identities=25% Similarity=0.377 Sum_probs=170.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCC-CCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDL-HHGEM 262 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 262 (1472)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999987 9999999998764322 356899999963 34468
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||.||+.+.....+.. .. +. ...++.+++.+||.+..++.+.
T Consensus 95 tv~~~l~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~---- 136 (277)
T PRK13652 95 TVEQDIAFGPINLGLD----------EE----------TV--------------AHRVSSALHMLGLEELRDRVPH---- 136 (277)
T ss_pred cHHHHHHhHHHHcCCC----------HH----------HH--------------HHHHHHHHHHCCChhHhcCCcc----
Confidence 9999998754321110 00 00 0123567889999887777665
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++.|++. ++.+.+|++++|++|
T Consensus 137 -~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G 214 (277)
T PRK13652 137 -HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKG 214 (277)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 499999999999999999999999999999999999999999999997755789888887654 777899999999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
++++.|+.+++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998874
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=290.82 Aligned_cols=197 Identities=27% Similarity=0.389 Sum_probs=168.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
..+|+|||++|.+||.++++||||||||||||+++|..+ +..|+|.+||.++....- ..|.|+|++.++|-+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 459999999999999999999999999999999999987 458999999998754322 3489999999999999999
Q ss_pred HHHHHHHcCCCch----HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHH
Q 045902 983 SLLYSAWLRLPKD----MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058 (1472)
Q Consensus 983 ~l~~~~~l~~~~~----~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~ 1058 (1472)
|+.|+..++.-.+ +...+.+..+||.+..++.+ -.||||||||+.|||||+.+|+.|+||||.+.||+-++
T Consensus 94 NvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tR 168 (259)
T COG4525 94 NVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHH
Confidence 9999998875433 34556677777777766553 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEecC-cEEEEEcCCC
Q 045902 1059 AIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GHVIYAGPLG 1109 (1472)
Q Consensus 1059 ~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g-g~v~~~g~~~ 1109 (1472)
+.++++|-++. ++|+.++++||+.+ +..-.++++++|+.+ |+|+..-|++
T Consensus 169 e~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 169 EQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999886 45999999999976 444567999999743 6888777764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=323.79 Aligned_cols=208 Identities=25% Similarity=0.307 Sum_probs=170.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCC-CCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDL-HHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 261 (1472)
+++|+|+|++|++||+++|+||||||||||+++|+|.++++...+|+|.++|.++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 358999999999999999999999999999999999998862223999999998865322 357999999974 6778
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.|..+..+.. ..+ . ...++.+++.+||++..++.+.
T Consensus 100 ~tv~enl~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~L~~~~~~~~~--- 142 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------RPE----------M--------------IKIVRDVLADVGMLDYIDSEPA--- 142 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------HHH----------H--------------HHHHHHHHHHCCChhHhcCCcc---
Confidence 99999998754321110 000 0 0013557888999877776654
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++..+.|+|++.|++. ++ ..+|++++|++
T Consensus 143 --~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~ 218 (282)
T PRK13640 143 --NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD 218 (282)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999997655889999888775 44 57999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998774
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=319.04 Aligned_cols=213 Identities=23% Similarity=0.300 Sum_probs=167.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~ 954 (1472)
+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 4 FNIENLDLFY-------------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred EEEeccEEEE-------------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 5566766544 2346999999999999999999999999999999999986532 35899999998
Q ss_pred cCC----hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch----HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 955 PKK----QETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD----MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 955 ~~~----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~----~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
++. ....++.++|++|++.+++ .|+.||+.+..... ...+ ..++++++.+++.+....... .....|||
T Consensus 71 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~ 148 (249)
T PRK14253 71 DIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFGLSG 148 (249)
T ss_pred EcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhh-cCcccCCH
Confidence 753 1234567999999998887 89999998764332 1111 234456666665421111111 12357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|++ |+++..
T Consensus 149 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~ 225 (249)
T PRK14253 149 GQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEH 225 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999975 589999999976 57788999999985 789888
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 226 g~~ 228 (249)
T PRK14253 226 DDT 228 (249)
T ss_pred CCH
Confidence 874
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=311.60 Aligned_cols=185 Identities=26% Similarity=0.362 Sum_probs=156.6
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+......++.++|++|++.+++.+|+.|
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 469999999999999999999999999999999999876 458999999987532225667899999988888999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
++.+....+...+..++++++.+++.+..+... ..||||||||++||++|+.+|++|+|||||+|||+.+...++
T Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 167 (207)
T PRK13539 93 NLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167 (207)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 998765443223345788888888876555443 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
+.|++++++|+|||++||+++ .... |+++.+.
T Consensus 168 ~~l~~~~~~~~tiii~sH~~~--~~~~-~~~~~~~ 199 (207)
T PRK13539 168 ELIRAHLAQGGIVIAATHIPL--GLPG-ARELDLG 199 (207)
T ss_pred HHHHHHHHCCCEEEEEeCCch--hhcc-CcEEeec
Confidence 999998878999999999975 3334 8887764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=319.94 Aligned_cols=203 Identities=21% Similarity=0.266 Sum_probs=165.3
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCccCCh-----hcccceeEEeccCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGYPKKQ-----ETFARISGYCEQNDI 973 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~ 973 (1472)
+..+|+|+|++++|||++||+|+||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 457999999999999999999999999999999999987531 258999999987532 234567999999988
Q ss_pred CCCCCCHHHHHHHHHHcCCCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCC
Q 045902 974 HSPNVTIYESLLYSAWLRLPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~l~~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPT 1050 (1472)
++ .+|+.||+.+....+... ...++++++.+++.+..+...+ ...+.||||||||++|||||+.+|++|+|||||
T Consensus 100 ~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt 177 (261)
T PRK14263 100 PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPC 177 (261)
T ss_pred cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 77 599999998875433211 1345677777776432221221 124579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-------cCcEEEEEcCC
Q 045902 1051 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-------RGGHVIYAGPL 1108 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-------~gg~v~~~g~~ 1108 (1472)
+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+ ++|+++..|+.
T Consensus 178 sgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 178 SALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred ccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 9999999999999999996 4799999999976 4778899999996 45899999875
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=353.47 Aligned_cols=212 Identities=21% Similarity=0.330 Sum_probs=177.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|+||+|++|+++||+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQY-------------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEe-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 36778887664 23469999999999999999999999999999999999876 3589999999875
Q ss_pred Ch---hc-ccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 957 KQ---ET-FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 957 ~~---~~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
.. .. .++.+||++|++.+++.+||+|++.+.........+.++++++.+++.+..+..+ ..|||||||||+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ 150 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVE 150 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHH
Confidence 32 11 2245899999999999999999998753211111245677888888877666554 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|.+ |++++.|+..+
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSGKTAD 226 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecChHH
Confidence 999999999999999999999999999999999999888999999999976 46788999999985 78888888643
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=323.86 Aligned_cols=212 Identities=24% Similarity=0.335 Sum_probs=173.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+.. ..+..+|+|||+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 3677887766521 012359999999999999999999999999999999999877 4589999999876
Q ss_pred Ch---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 957 KQ---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. ...++.+||++|++. .++..||.||+.+..... .... +.++++++.+++.+..++. +..||||||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQK 146 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHH
Confidence 43 234567999999974 567789999998765432 1221 3456788888887766654 347999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..+|++++|++ |+++..|+
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~~g~ 223 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIKEAA 223 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999875 9999999999763 4 46999999986 68888887
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 224 ~ 224 (277)
T PRK13642 224 P 224 (277)
T ss_pred H
Confidence 5
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=326.38 Aligned_cols=205 Identities=22% Similarity=0.318 Sum_probs=168.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-------CCceEEEEcCCCC-
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-------PQRTCAYISQHDL- 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 257 (1472)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 46999999999999999999999999999999999999997 999999999875421 1346999999962
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-cccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIM 336 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 336 (1472)
.+..+||+||+.|+....+.. ..+ . ...++.+++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------EDE----------A--------------KEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCChhHhhCC
Confidence 344689999998754321110 000 0 00135578889997 566766
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.+++|++
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~-~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHN-MDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEE
Confidence 654 999999999999999999999999999999999999999999999865 57888887765 45778899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=317.36 Aligned_cols=213 Identities=25% Similarity=0.290 Sum_probs=168.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS--DKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 259 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.. +++ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 565 8999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-cccccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVG 338 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg 338 (1472)
+.+|++|++.+......... ... . .+..+. ...++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~----------~~~--~-~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSAR----------GEE--P-LDLLDF--------------LKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccc----------ccc--c-ccHHHH--------------HHHHHHHHHHcCCchhhcccccc
Confidence 99999999987543211000 000 0 000000 01235678889997 45565543
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc-cCeEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-FDDII 417 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~-fD~ii 417 (1472)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+. +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999865 5788888887764 56666 79999
Q ss_pred EecCCeEEEecChhHHH
Q 045902 418 LLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~ 434 (1472)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=319.04 Aligned_cols=213 Identities=24% Similarity=0.359 Sum_probs=168.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~ 954 (1472)
+.++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYY-------------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEe-------------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 5677776554 2346999999999999999999999999999999999976521 25899999998
Q ss_pred cCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch----HHHHHHHHHcccccccccccCCCCCCCCC
Q 045902 955 PKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD----MFVEEVMELVEMKALRNSLVGLPGVDGLS 1024 (1472)
Q Consensus 955 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~----~~~~~v~~~l~l~~~~~~~~~~~~~~~LS 1024 (1472)
++.. ...++.++|++|++.+++ .|++||+.+...... ... ..++++++.+++....+.... ..+..||
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS 148 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTRLS 148 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhhcC
Confidence 7532 234567999999998887 899999987643321 111 234566777776432111111 1245799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 149 ~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~ 225 (250)
T PRK14262 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIE 225 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 799999999976 47788999999986 78888
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|+.
T Consensus 226 ~g~~ 229 (250)
T PRK14262 226 YGPT 229 (250)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=316.44 Aligned_cols=209 Identities=24% Similarity=0.346 Sum_probs=161.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 259 (1472)
.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +....+|+|.++|+++.... .++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 58999999999999999999999999999999999864 10012899999999875321 135799999998888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+ .||+||+.+.....+.... .+.+ ..++.+++.+||.+..++.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~-------------------~~~~--------------~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK-------------------AYLA--------------ERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH-------------------HHHH--------------HHHHHHHHHcCCchhhhHHh-h
Confidence 7 5999999886432211000 0000 01234566677743211111 1
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
...+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++.|++ .++.+++|++++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999853 57888887765 4677899999999
Q ss_pred cCCeEEEecChhHH
Q 045902 420 SEGEIVYQGPREYV 433 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~ 433 (1472)
++|+++..|+.+++
T Consensus 222 ~~G~i~~~g~~~~~ 235 (253)
T PRK14242 222 YMGKLIEVGPTEQI 235 (253)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998766
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=314.48 Aligned_cols=206 Identities=27% Similarity=0.364 Sum_probs=173.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.++||++++|+||||||||||+++|+|.++++ +|+|+++|+++.+... ++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999987 8999999998865432 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.+.....+... . .. ....+.+++.+||++..++.+. .
T Consensus 90 ~~nl~~~~~~~~~~~--~------------------~~--------------~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T cd03300 90 FENIAFGLRLKKLPK--A------------------EI--------------KERVAEALDLVQLEGYANRKPS-----Q 130 (232)
T ss_pred HHHHHHHHHhcCCCH--H------------------HH--------------HHHHHHHHHHcCCchhhcCChh-----h
Confidence 999987643221100 0 00 0013567888999887776664 5
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998765578999988776 467889999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999877653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=326.07 Aligned_cols=211 Identities=20% Similarity=0.312 Sum_probs=166.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEEcCeeCCCC-----CCCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTEF-----VPQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 258 (1472)
..+|+|+|+.|++||+++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999997531 01279999999998632 224679999999988
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++ .||+||+.|+....+.. ..+. .+ ..++.+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~----------~~~~---------~~--------------~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIN----------DRKI---------LE--------------KIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCC----------hHHH---------HH--------------HHHHHHHHHcCCcchhhhhhh
Confidence 84 79999999864321100 0000 00 012334566666443344444
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+.+..|||||||||+||||++.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++.|++ ..+.+.+|+|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driiv 296 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVF 296 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 45677999999999999999999999999999999999999999999999864 57888887765 466778999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=326.16 Aligned_cols=209 Identities=25% Similarity=0.392 Sum_probs=174.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---CCceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---PQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 261 (1472)
++++|+||||++.||+.+|++||||+||||+|++|-...+-+ +|.|++||+++.... .++.+|.|||+..+|.+
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND 626 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence 357999999999999999999999999999999999999887 999999999987643 35789999999888854
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
|+..||.|+..- ..++++.++.||+.++ | +++++++..+|.||. +
T Consensus 627 -TI~yNIryak~~----------------------AsneevyaAAkAA~IH--------d---rIl~fPegY~t~VGE-R 671 (790)
T KOG0056|consen 627 -TILYNIRYAKPS----------------------ASNEEVYAAAKAAQIH--------D---RILQFPEGYNTRVGE-R 671 (790)
T ss_pred -eeeeheeecCCC----------------------CChHHHHHHHHHhhHH--------H---HHhcCchhhhhhhhh-c
Confidence 999999885211 0123444445554432 2 568899999999995 4
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+-.|||||||||+|||+++..|.|++|||.||+||.+|.++|..+|.+++. ++|.|+.-|.- .+.-.+|.|+++++
T Consensus 672 GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRL--STivnAD~ILvi~~ 747 (790)
T KOG0056|consen 672 GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRL--STIVNADLILVISN 747 (790)
T ss_pred ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeee--hheecccEEEEEeC
Confidence 445999999999999999999999999999999999999999999999986 45656555543 45567999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+|++.|.++|++.
T Consensus 748 G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 748 GRIVERGRHEELLK 761 (790)
T ss_pred CeEeecCcHHHHHh
Confidence 99999999999875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=311.88 Aligned_cols=195 Identities=25% Similarity=0.381 Sum_probs=163.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHHHHH
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|.++....+ ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999887 8999999998865432 357999999999999999999998
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
+....... . .+.. +...+.+++.+||++..++.+. .|||||
T Consensus 93 ~~~~~~~~-~--------~~~~-------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (211)
T cd03298 93 LGLSPGLK-L--------TAED-------------------------RQAIEVALARVGLAGLEKRLPG-----ELSGGE 133 (211)
T ss_pred cccccccC-c--------cHHH-------------------------HHHHHHHHHHcCCHHHHhCCcc-----cCCHHH
Confidence 75321100 0 0000 0113557888999877776664 599999
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEec
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQG 428 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G 428 (1472)
|||++||++++.+|++++|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999998765678888877664 4677889999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=365.60 Aligned_cols=208 Identities=27% Similarity=0.360 Sum_probs=171.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|++||+++++..+ ++.++||+|++.+|+ .
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-G 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-H
Confidence 35899999999999999999999999999999999999998 9999999999987654 468999999998885 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+|||.++.+.. .+++++.+..+.+.+ +..++ .++...||.+|+ .+
T Consensus 563 TI~eNi~l~~~~~---------------------~~~~~i~~a~~~a~l---------~~~i~--~lp~gldt~i~e-~G 609 (708)
T TIGR01193 563 SILENLLLGAKEN---------------------VSQDEIWAACEIAEI---------KDDIE--NMPLGYQTELSE-EG 609 (708)
T ss_pred HHHHHHhccCCCC---------------------CCHHHHHHHHHHhCC---------HHHHH--hcccccCcEecC-CC
Confidence 9999998752100 011122222222211 11222 356677999984 67
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.+||||||||++||||++.+|++|+||||||+||+.++..+.+.|+++ .++|+|++.|.+ ++.+.+|+|++|++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999874 368988888876 466889999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
++++.|+++++.+
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=320.66 Aligned_cols=214 Identities=23% Similarity=0.337 Sum_probs=170.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC-e--eEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-Y--IEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~--~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 466778776542 246999999999999999999999999999999999976532 2 489999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cc---hHHHHHHHHHcccccc-cccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PK---DMFVEEVMELVEMKAL-RNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~---~~~~~~v~~~l~l~~~-~~~~~~~~~~~~ 1022 (1472)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. +. +..++++++.+++... .+.. ...+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~ 150 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL--NKSALG 150 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh--cCCccc
Confidence 87532 234567999999998887 899999987654322 11 1345567777776321 1111 112457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEec----
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR---- 1098 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~---- 1098 (1472)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|++
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~ 228 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESR 228 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCC
Confidence 999999999999999999999999999999999999999999999865 699999999987 57788999999973
Q ss_pred CcEEEEEcCC
Q 045902 1099 GGHVIYAGPL 1108 (1472)
Q Consensus 1099 gg~v~~~g~~ 1108 (1472)
.|++++.|+.
T Consensus 229 ~G~i~~~~~~ 238 (259)
T PRK14260 229 IGQMVEFGVT 238 (259)
T ss_pred CceEEEeCCH
Confidence 4899999875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=324.41 Aligned_cols=206 Identities=20% Similarity=0.299 Sum_probs=166.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC----C----CCCceEEEEcCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE----F----VPQRTCAYISQHDL 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~----~~~~~~~yv~Q~d~ 257 (1472)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35899999999999999999999999999999999999887 8999999998742 1 11357999999973
Q ss_pred -CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccc
Q 045902 258 -HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADI 335 (1472)
Q Consensus 258 -~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 335 (1472)
.+...||+||+.|.....+.. ..+ .. ..++.+++.+||+ +..++
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~----------~~~----------~~--------------~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGEN----------KQE----------AY--------------KKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCC----------HHH----------HH--------------HHHHHHHHHcCCChhHhcC
Confidence 233469999998754321110 000 00 0134567888884 56666
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..++|+|++.|++. ++.+++|+
T Consensus 147 ~~~-----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~ 220 (289)
T PRK13645 147 SPF-----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADE 220 (289)
T ss_pred Chh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 554 499999999999999999999999999999999999999999999987655788888877654 67889999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 221 VIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999987763
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=321.36 Aligned_cols=216 Identities=22% Similarity=0.286 Sum_probs=170.8
Q ss_pred ceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEE
Q 045902 875 PLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISI 951 (1472)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i 951 (1472)
+..+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34678888877642 346999999999999999999999999999999999975421 24899999
Q ss_pred cCccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-C--chHHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 952 SGYPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-P--KDMFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 952 ~G~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~--~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
+|.++.. ..+++.++|++|+..+++. |+.||+.+....+. . .+...++.++.+++.. +.+.. . ..+..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~-~~~~~ 161 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKL-K-EKGTA 161 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHh-c-CCccc
Confidence 9987531 2345679999999888764 99999987643321 1 1223455666666532 11111 1 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK----- 1097 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~----- 1097 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~ 239 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDE 239 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999975 799999999986 5778899999997
Q ss_pred ---cCcEEEEEcCC
Q 045902 1098 ---RGGHVIYAGPL 1108 (1472)
Q Consensus 1098 ---~gg~v~~~g~~ 1108 (1472)
+.|++++.|+.
T Consensus 240 ~~~~~G~~~~~g~~ 253 (274)
T PRK14265 240 YGKRRGKLVEFSPT 253 (274)
T ss_pred ccccCceEEEeCCH
Confidence 25899999986
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=321.55 Aligned_cols=215 Identities=26% Similarity=0.324 Sum_probs=171.5
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---CeeEEEEEEc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GYIEGSISIS 952 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 952 (1472)
..+.++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3577888877652 24699999999999999999999999999999999998652 1358999999
Q ss_pred CccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cc---hHHHHHHHHHcccccccccccCCCCCCC
Q 045902 953 GYPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PK---DMFVEEVMELVEMKALRNSLVGLPGVDG 1022 (1472)
Q Consensus 953 G~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~ 1022 (1472)
|.+... ..+++.++|++|++.+++. |++||+.+...... .. +..++++++.+++.......... ....
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 168 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHE-NAFG 168 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Cccc
Confidence 987632 2345679999999988876 99999987644321 11 13356667777764311111111 2357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|++ |++
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i 245 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKL 245 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999975 799999999976 46778999999985 789
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 246 ~~~g~~ 251 (272)
T PRK14236 246 VEYGDT 251 (272)
T ss_pred EecCCH
Confidence 888875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=313.51 Aligned_cols=204 Identities=25% Similarity=0.386 Sum_probs=164.9
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC-C-C-eeEEEEEEcCccC---Chhc----ccceeEEeccC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-G-G-YIEGSISISGYPK---KQET----FARISGYCEQN 971 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~-~-~~~G~i~i~G~~~---~~~~----~~~~~gyv~Q~ 971 (1472)
..++++||||++++||++||+|.||||||||.++|.|.++ + + ..+|+|.++|.++ +++. +-+.++|++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3579999999999999999999999999999999999876 2 2 4678999999864 2222 23579999999
Q ss_pred C--CCCCCCCHHHHHHHHHHcCC---CchHHHHHHHHHcccccccc---cccCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 045902 972 D--IHSPNVTIYESLLYSAWLRL---PKDMFVEEVMELVEMKALRN---SLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043 (1472)
Q Consensus 972 ~--~~~~~lTv~e~l~~~~~l~~---~~~~~~~~v~~~l~l~~~~~---~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~i 1043 (1472)
+ .+.|.+||.+.+.-...... ..++..+++.+.|+..++.+ .....| ..|||||||||.||.||+.+|++
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP--helSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC--cccCCcHHHHHHHHHHHhCCCCE
Confidence 7 46788999888765554332 12233344444444444443 333344 58999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1044 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1044 l~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
||.||||++||...+++|+++|+++.+ .|.|+|++|||+.. +.+.||||.||.. |++++.|+..
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYa-G~iVE~g~~~ 239 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYA-GRIVEEGPVE 239 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEEC-cEEEEeCCHH
Confidence 999999999999999999999999986 59999999999874 8889999999985 8999999963
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=323.01 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=169.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCC-CCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDL-HHGE 261 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~~ 261 (1472)
.+|+|+|++|++||+++|+|||||||||||++|+|.++++ +|+|.++|.++....+ ++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 5999999999999999999999999999999999999887 8999999998865432 357999999975 4667
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||.||+.|.....+.. ..+ .+ ..++.+++.+||++..++.++
T Consensus 93 ~tv~enl~~~~~~~~~~----------~~~----------~~--------------~~~~~~l~~~gl~~~~~~~~~--- 135 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP----------PIE----------IR--------------KRVDRALAEIGLEKYRHRSPK--- 135 (274)
T ss_pred chHHHHHHhhHHHcCCC----------HHH----------HH--------------HHHHHHHHHCCCHHHhcCCcc---
Confidence 89999998764322110 000 00 013557888999888777665
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++ ..+|++++|++
T Consensus 136 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~ 210 (274)
T PRK13644 136 --TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDR 210 (274)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999875 5889999888765 45 56999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988763
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=319.66 Aligned_cols=216 Identities=23% Similarity=0.324 Sum_probs=172.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G 953 (1472)
.+.++|+++.+. +..+|+|+||++++||++||+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 467888876642 236999999999999999999999999999999999986632 1379999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cc---hHHHHHHHHHcccccccccccCCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PK---DMFVEEVMELVEMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~L 1023 (1472)
.++.. ...++.++|++|+..+++ .|+.||+.+...... +. ...++++++.+++.+..+..... .+..|
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 151 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHK-SALDL 151 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcC-CcccC
Confidence 87521 234567899999988887 899999987643321 11 13456677777764321112221 23579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecC---
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG--- 1099 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~g--- 1099 (1472)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|+++
T Consensus 152 SgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~ 230 (261)
T PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENR 230 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCc
Confidence 99999999999999999999999999999999999999999999865 4899999999986 577899999999863
Q ss_pred -cEEEEEcCC
Q 045902 1100 -GHVIYAGPL 1108 (1472)
Q Consensus 1100 -g~v~~~g~~ 1108 (1472)
|++++.|+.
T Consensus 231 ~G~i~~~~~~ 240 (261)
T PRK14258 231 IGQLVEFGLT 240 (261)
T ss_pred CceEEEeCCH
Confidence 789999875
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=317.94 Aligned_cols=214 Identities=24% Similarity=0.342 Sum_probs=168.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCe---eEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY---IEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~---~~G~i~i~G 953 (1472)
.+.++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYY-------------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEE-------------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 45667776554 23469999999999999999999999999999999999865422 379999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch----HHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD----MFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~----~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
.++.. ..+++.++|++|++.+++.+|+.||+.+..... .... +..+++++.+++.. +.+.. . ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~-~~~~~ 148 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL-K-TPATG 148 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhh-c-CCccc
Confidence 87632 234567899999999999999999998754322 1111 22334455555431 11111 1 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|++ |++
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 225 (252)
T PRK14272 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDL 225 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999964 799999999976 46778999999986 788
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
++.|+.
T Consensus 226 ~~~~~~ 231 (252)
T PRK14272 226 VEHGPT 231 (252)
T ss_pred EEeCCH
Confidence 888875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=309.37 Aligned_cols=183 Identities=23% Similarity=0.285 Sum_probs=154.1
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 3579999999999999999999999999999999999876 358999999987532 234567899999988888899
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
+.|++.+....+...+..++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 164 (198)
T TIGR01189 90 ALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVA 164 (198)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 999998765443333345778888888877666543 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEE
Q 045902 1060 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1094 (1472)
Q Consensus 1060 ~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~ 1094 (1472)
.+++.|++++++|.|||+++|++.. -.+++++
T Consensus 165 ~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~ 196 (198)
T TIGR01189 165 LLAGLLRAHLARGGIVLLTTHQDLG---LVEAREL 196 (198)
T ss_pred HHHHHHHHHHhCCCEEEEEEccccc---ccceEEe
Confidence 9999999998789999999998742 2345554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=367.39 Aligned_cols=208 Identities=29% Similarity=0.360 Sum_probs=176.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++|.++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 5889999988731 23569999999999999999999999999999999999987 4589999999986
Q ss_pred C---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCHH
Q 045902 957 K---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSgG 1026 (1472)
. ...+++.+|||+|++.+++ -|++||+.+... ..++.+.++++..++.+.. |+.+|.. ..+||||
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGG 592 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGG 592 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHH
Confidence 4 3567888999999999886 499999987532 3345667777777776543 4445543 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|++++|++ |+++..|
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~-G~iv~~G 666 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA-GRVVQQG 666 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999886 589999999975 5678999999985 7999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 667 ~~ 668 (686)
T TIGR03797 667 TY 668 (686)
T ss_pred CH
Confidence 84
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=314.40 Aligned_cols=204 Identities=26% Similarity=0.406 Sum_probs=172.2
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+|+|+|++++|||+++|+||||||||||+++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999987 8999999998865432 357999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.+.....+.. . .+.+ ..++.+++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~----------~----------~~~~--------------~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVD----------K----------KEIE--------------RKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCC----------H----------HHHH--------------HHHHHHHHHcCChhHHhcCccc-----CC
Confidence 998754221100 0 0000 0124567888998777776654 99
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
|||||||+||+|++.+|++++|||||+|||..++..+.+.|++++...+.|++++.|++ +++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998765588999988876 46788999999999999999
Q ss_pred ecChhHHH
Q 045902 427 QGPREYVL 434 (1472)
Q Consensus 427 ~G~~~~~~ 434 (1472)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=301.97 Aligned_cols=157 Identities=30% Similarity=0.458 Sum_probs=142.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCCH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
..+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++..|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 469999999999999999999999999999999999876 358999999987543 2345678999999988888999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHH
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~ 1060 (1472)
.|++. ||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus 91 ~~~~~-------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 133 (173)
T cd03230 91 RENLK-------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRRE 133 (173)
T ss_pred HHHhh-------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 99973 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1061 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1061 i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+.+.|++++++|.|||+++|+++ ++.+.+|++++|++|
T Consensus 134 l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 134 FWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 99999999877899999999976 466789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=317.32 Aligned_cols=209 Identities=24% Similarity=0.334 Sum_probs=167.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEEcCeeCCCCC---CCceEEEEcCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTEFV---PQRTCAYISQHDLHHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 260 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35899999999999999999999999999999999998641 113899999999876532 2357999999998899
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc----ccccc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI----CADIM 336 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt~ 336 (1472)
.+||+||+.+..+....... . .+. ...++.+++.+||.+ ..|+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------~----------~~~--------------~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------K----------KEL--------------QERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------H----------HHH--------------HHHHHHHHHHcCCCcchhhhhcCC
Confidence 99999999886432110000 0 000 001345677888753 34444
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++.+++|++
T Consensus 144 ~-----~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i 215 (250)
T PRK14247 144 A-----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQ-QAARISDYV 215 (250)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCEE
Confidence 4 45999999999999999999999999999999999999999999999853 678888877654 677899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988763
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=285.83 Aligned_cols=206 Identities=24% Similarity=0.356 Sum_probs=176.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
..+|+|+|+.|.+||.++++||||||||||||+++|..+|. .|+|.+||.+++. |...-|.|+|+|.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999998 8999999998875 344458999999999999999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||++|+.++.|..... +++ .....+...||+...+..+- .|
T Consensus 93 dNvafgL~l~Gi~k~~-------R~~---------------------------~a~q~l~~VgL~~~~~~~i~-----qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKAQ-------RRE---------------------------IAHQMLALVGLEGAEHKYIW-----QL 133 (259)
T ss_pred HHHHHHHHhcCCCHHH-------HHH---------------------------HHHHHHHHhCcccccccceE-----ee
Confidence 9999999988764321 111 23457888899987776654 49
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec--CCe
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS--EGE 423 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~--~G~ 423 (1472)
||||||||.|||||..+|+.|+||||+.+||.-|+.++.+.|-++.+..|+.++++.| .-+|..-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH-~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITH-DIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEec-cHHHHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999999998888888877665 5667778999999997 479
Q ss_pred EEEecChhHHHHH
Q 045902 424 IVYQGPREYVLDF 436 (1472)
Q Consensus 424 iv~~G~~~~~~~~ 436 (1472)
|+..=+.+-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9987776544433
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=312.08 Aligned_cols=194 Identities=30% Similarity=0.423 Sum_probs=159.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCC-CCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDL-HHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 261 (1472)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999887 8999999998765322 357999999974 4678
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.+.....+.. .. +. ....+.+++.+||++..++.++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~--- 133 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------EE----------EI--------------EERVEEALELVGLEGLRDRSPF--- 133 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------HH----------HH--------------HHHHHHHHHHcCcHhhhcCCcc---
Confidence 99999998754321100 00 00 0013457888999877776665
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+++|+|++|++
T Consensus 134 --~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~ 209 (211)
T cd03225 134 --TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLED 209 (211)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 49999999999999999999999999999999999999999999998764 78888888765 477788999999999
Q ss_pred Ce
Q 045902 422 GE 423 (1472)
Q Consensus 422 G~ 423 (1472)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=352.61 Aligned_cols=211 Identities=26% Similarity=0.351 Sum_probs=176.5
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|+||+|++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAF-------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEe-------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 5677776654 235699999999999999999999999999999999998763 4899999998753
Q ss_pred h---h-cccceeEEeccCCCCCCCCCHHHHHHHHHHcC-----CCc---hHHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 958 Q---E-TFARISGYCEQNDIHSPNVTIYESLLYSAWLR-----LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 958 ~---~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-----~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
. . ..++.++|++|++.+++.+||+|++.+....+ .+. ...++++++.+++.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 2 1 12456899999998999999999998764321 111 134677888888877666554 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++.|.|||++||+++ ++.+.||++++|.+ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999976 47788999999985 788888
Q ss_pred cCCCc
Q 045902 1106 GPLGR 1110 (1472)
Q Consensus 1106 g~~~~ 1110 (1472)
|+..+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 88754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=327.58 Aligned_cols=216 Identities=21% Similarity=0.290 Sum_probs=172.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---CeeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GYIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~G 953 (1472)
.+.++|+++.+.. +...+|+|||++|++||++||+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5778888776531 224699999999999999999999999999999999997642 23589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCchH----HHHHHHHHcccccccccccCCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDM----FVEEVMELVEMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~~----~~~~v~~~l~l~~~~~~~~~~~~~~~L 1023 (1472)
.++.. ...++.++||+|++.+++ .|++||+.|..... ....+ .++++++.+++.+-.+..++.. ...|
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~~~L 226 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKA-GNAL 226 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-cccC
Confidence 98742 234667999999998875 79999999865332 11111 2456677777643222233332 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+|++++|++ |+++
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~i~ 303 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GWIE 303 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999875 699999999976 36677999999985 7999
Q ss_pred EEcCC
Q 045902 1104 YAGPL 1108 (1472)
Q Consensus 1104 ~~g~~ 1108 (1472)
..|+.
T Consensus 304 e~g~~ 308 (329)
T PRK14257 304 EAGET 308 (329)
T ss_pred EeCCH
Confidence 99876
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=313.00 Aligned_cols=196 Identities=24% Similarity=0.333 Sum_probs=162.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++..... ++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 36999999999999999999999999999999999999887 8999999998765321 35799999999888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+||+||+.+.....+... .+.. ..++.+++.+||++..++.++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~--------------------~~~~--------------~~~~~~l~~~~l~~~~~~~~~- 136 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG--------------------DDIR--------------RRVSAALDKVGLLDKAKNFPI- 136 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH--------------------HHHH--------------HHHHHHHHHcCChhhhhCCch-
Confidence 99999999987643221100 0000 012456788898876666554
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+.+|+|++|
T Consensus 137 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 210 (222)
T PRK10908 137 ----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTL 210 (222)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999865 477888877765 4677889999999
Q ss_pred cCCeEE
Q 045902 420 SEGEIV 425 (1472)
Q Consensus 420 ~~G~iv 425 (1472)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=314.21 Aligned_cols=201 Identities=21% Similarity=0.366 Sum_probs=163.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLA-------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEee-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 46778877654 23569999999999999999999999999999999999876 4589999999875
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC--chHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP--KDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKR 1030 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~--~~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqR 1030 (1472)
.. ..+++.++|++|++.+++ .|+.||+.+....+.. ....++++++.+++. ...++. +..||||||||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qr 145 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQR 145 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHH
Confidence 32 234567899999988876 4999999875443321 123456788888874 344443 34799999999
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCc
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg 1100 (1472)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|+++. + +.+|++++|.+.+
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~ 214 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHA 214 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEeccc
Confidence 99999999999999999999999999999999999999764 8999999999763 4 5799999996433
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=319.43 Aligned_cols=210 Identities=27% Similarity=0.312 Sum_probs=168.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc-
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP- 955 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~- 955 (1472)
.+.++|+++.++ ++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 367778776542 2469999999999999999999999999999999999876 358999999987
Q ss_pred ----CCh---hc----ccceeEEeccCCC--CCCCCCHHHHHHHHHHc-CC-Cc---hHHHHHHHHHccccc-ccccccC
Q 045902 956 ----KKQ---ET----FARISGYCEQNDI--HSPNVTIYESLLYSAWL-RL-PK---DMFVEEVMELVEMKA-LRNSLVG 1016 (1472)
Q Consensus 956 ----~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~l-~~-~~---~~~~~~v~~~l~l~~-~~~~~~~ 1016 (1472)
+.. .. .++.++|++|++. +.+.+|+.|++.+.... .. .. ...+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL-- 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC--
Confidence 432 11 2346899999974 56778999998764321 11 11 134556777777752 33332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEE
Q 045902 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1017 ~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|+++ .+.+.+|++++
T Consensus 149 ---~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~ 224 (258)
T PRK11701 149 ---PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLV 224 (258)
T ss_pred ---CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999976 46668999999
Q ss_pred EecCcEEEEEcCC
Q 045902 1096 MKRGGHVIYAGPL 1108 (1472)
Q Consensus 1096 l~~gg~v~~~g~~ 1108 (1472)
|++ |++++.|+.
T Consensus 225 l~~-g~i~~~~~~ 236 (258)
T PRK11701 225 MKQ-GRVVESGLT 236 (258)
T ss_pred EEC-CEEEEeCCH
Confidence 985 789988875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=320.94 Aligned_cols=201 Identities=23% Similarity=0.317 Sum_probs=161.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--C-eeEEEEEEcCccCCh-----hcccceeEEeccCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-YIEGSISISGYPKKQ-----ETFARISGYCEQNDIH 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~~ 974 (1472)
+.+|+|+||+|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 4699999999999999999999999999999999998641 1 358999999987532 1345678999999888
Q ss_pred CCCCCHHHHHHHHHHcCC---Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccC
Q 045902 975 SPNVTIYESLLYSAWLRL---PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~~---~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDE 1048 (1472)
++. |+.||+.+....+. .. +..++++++.+++.+........ .+..||||||||++|||+|+.+|++|+|||
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllDE 175 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFELSGGQQQRLCIARAIAVKPTMLLMDE 175 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 875 99999987643321 11 12345677777775421111111 235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1049 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1049 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 176 PCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred CCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999985 4899999999976 46778999999986 788888874
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=282.19 Aligned_cols=202 Identities=26% Similarity=0.363 Sum_probs=174.6
Q ss_pred CCcccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEc
Q 045902 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYIS 253 (1472)
Q Consensus 181 ~~~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~ 253 (1472)
....+.+||++|++.|++||.++|+|||||||||||-+|+|+-+++ +|+|.+.|+++..... .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3456688999999999999999999999999999999999999998 9999999999877643 26899999
Q ss_pred CCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccc
Q 045902 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICA 333 (1472)
Q Consensus 254 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 333 (1472)
|...++|+||-.||+...+.+++...+. .. ......|+.+||.+-.
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~~----------------------~~------------~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSAD----------------------SR------------AGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCcccc----------------------HH------------HHHHHHHHHhCccccc
Confidence 9999999999999998877665532110 00 0124468899999877
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhcc
Q 045902 334 DIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413 (1472)
Q Consensus 334 dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~f 413 (1472)
+.+.+ .|||||+|||+||||+...|+|||-||||-+||..|..+|.+.|-.+.+..|.|.|+..|+|. ...-|
T Consensus 141 ~HyP~-----qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc 213 (228)
T COG4181 141 THYPA-----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARC 213 (228)
T ss_pred ccCcc-----ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhh
Confidence 75554 599999999999999999999999999999999999999999999999999999999988774 66789
Q ss_pred CeEEEecCCeEEE
Q 045902 414 DDIILLSEGEIVY 426 (1472)
Q Consensus 414 D~iilL~~G~iv~ 426 (1472)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999974
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=313.44 Aligned_cols=195 Identities=28% Similarity=0.436 Sum_probs=159.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 469999999999999999999999999999999999876 358999999987532 234567899999998776 69
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHcccccccccccC------CCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVG------LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~------~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
+.|++.+... ......++++++.+++.+..+.... ......||||||||++||++|+.+|++|+|||||+||
T Consensus 94 v~e~l~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~L 171 (220)
T cd03245 94 LRDNITLGAP--LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAM 171 (220)
T ss_pred HHHHhhcCCC--CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 9999976422 1123345677888888766655321 0123579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|+.++..+++.|++++++ +|||++||+++ ..+.+|++++|++ |++++.|
T Consensus 172 D~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 172 DMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred CHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-CeEeecC
Confidence 999999999999999764 89999999976 3479999999986 6776543
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=318.09 Aligned_cols=205 Identities=24% Similarity=0.328 Sum_probs=168.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC----------------CCCceE
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF----------------VPQRTC 249 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 249 (1472)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 36999999999999999999999999999999999999887 89999999987531 113579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhh-ccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhC
Q 045902 250 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG 328 (1472)
Q Consensus 250 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 328 (1472)
+|++|++.+++.+||+||+.++.. ..... .. +. ......+++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KQ----------EA--------------RERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------HH----------HH--------------HHHHHHHHHHcC
Confidence 999999999999999999987431 11100 00 00 001345788899
Q ss_pred Ccccc-cccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc
Q 045902 329 LDICA-DIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407 (1472)
Q Consensus 329 L~~~~-dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 407 (1472)
|.+.. +..+ ..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .
T Consensus 141 l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~ 213 (257)
T PRK10619 141 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-G 213 (257)
T ss_pred CChhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H
Confidence 97653 5444 45999999999999999999999999999999999999999999999875 488888887765 4
Q ss_pred hHHhccCeEEEecCCeEEEecChhHHH
Q 045902 408 ETYDLFDDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 408 ~~~~~fD~iilL~~G~iv~~G~~~~~~ 434 (1472)
++.+++|+|++|++|++++.|+.+++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 677889999999999999999987763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=320.11 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=168.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-CeeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GYIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 467888876542 3469999999999999999999999999999999999642 1 13589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc----hHHHHHHHHHccccc----ccccccCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK----DMFVEEVMELVEMKA----LRNSLVGLPG 1019 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~----~~~~~~v~~~l~l~~----~~~~~~~~~~ 1019 (1472)
.++.. ..+++.++|++|++.+++. |+.||+.+...... .. +..++++++.+++.. ..+. .
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHS-----S 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhc-----C
Confidence 87632 1345679999999988875 99999987643221 11 123455666666632 2222 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|++
T Consensus 162 ~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~- 238 (268)
T PRK14248 162 ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLN- 238 (268)
T ss_pred cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999965 689999999976 47788999999985
Q ss_pred cEEEEEcCC
Q 045902 1100 GHVIYAGPL 1108 (1472)
Q Consensus 1100 g~v~~~g~~ 1108 (1472)
|++++.|+.
T Consensus 239 G~i~~~~~~ 247 (268)
T PRK14248 239 GDLVEYDQT 247 (268)
T ss_pred CEEEEeCCH
Confidence 789988875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=319.86 Aligned_cols=207 Identities=22% Similarity=0.245 Sum_probs=169.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCC--CCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDL--HHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 260 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 8999999998764221 246999999874 567
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccccccC
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVGN 339 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~ 339 (1472)
.+||.|++.+..+..... ... +. ...++.+++.+||. +..++.+.
T Consensus 103 ~~tv~~~l~~~~~~~~~~---------~~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~~- 148 (267)
T PRK15112 103 RQRISQILDFPLRLNTDL---------EPE----------QR--------------EKQIIETLRQVGLLPDHASYYPH- 148 (267)
T ss_pred chhHHHHHHHHHHhccCC---------CHH----------HH--------------HHHHHHHHHHcCCChHHHhcCch-
Confidence 889999998754321100 000 00 00135578889994 55565554
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|
T Consensus 149 ----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l 223 (267)
T PRK15112 149 ----MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVM 223 (267)
T ss_pred ----hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEE
Confidence 59999999999999999999999999999999999999999999999775578888887765 4777899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999987764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=318.62 Aligned_cols=205 Identities=22% Similarity=0.332 Sum_probs=163.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEEcCeeCCCCC-----CCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTEFV-----PQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.+++. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998641 012899999999875321 23569999999888
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc----cccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD----ICAD 334 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 334 (1472)
++ +||+||+.|..+..+.. ..+ .+ ..++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~~~----------~~--------------~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------KKD----------LD--------------GVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------HHH----------HH--------------HHHHHHHHHcCCCcchhhhhc
Confidence 87 89999998864322110 000 00 0134467777773 3344
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
+.+ +.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.+++|
T Consensus 150 ~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d 221 (258)
T PRK14268 150 SPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISD 221 (258)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999853 68888887765 46778999
Q ss_pred eEEEecCCeEEEecChhHH
Q 045902 415 DIILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 415 ~iilL~~G~iv~~G~~~~~ 433 (1472)
++++|++|++++.|+.+++
T Consensus 222 ~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998776
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=323.32 Aligned_cols=211 Identities=27% Similarity=0.434 Sum_probs=169.5
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+. +++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 467888876542 12469999999999999999999999999999999999876 4589999999876
Q ss_pred ChhcccceeEEeccCCCCC--CCCCHHHHHHHHHHc-----CCCc---hHHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 957 KQETFARISGYCEQNDIHS--PNVTIYESLLYSAWL-----RLPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~l-----~~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
.....++.++|++|++.+. ...+++|++.+.... ..+. +..++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4332234689999997653 235788887653210 1111 234567788888877666543 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999976 467889998766 4 7899888
Q ss_pred CCC
Q 045902 1107 PLG 1109 (1472)
Q Consensus 1107 ~~~ 1109 (1472)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=319.39 Aligned_cols=205 Identities=22% Similarity=0.281 Sum_probs=169.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---CCceEEEEcCCCC-CCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---PQRTCAYISQHDL-HHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 261 (1472)
..+|+|+|+.+++||+++|+|+||||||||+++|+|.++++ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999987 899999999876432 2457999999974 6778
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||.||+.+.....+.. +.+ .. ..++.+++.+||++..++.+.
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~----------~~--------------~~~~~~l~~~~l~~~~~~~~~--- 139 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------REE----------MI--------------KRVDEALLAVNMLDFKTREPA--- 139 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HHH----------HH--------------HHHHHHHHHCCCHhHhhCCcc---
Confidence 89999998754321110 000 00 013567888899877776554
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .+|+|++|++
T Consensus 140 --~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~ 215 (277)
T PRK13642 140 --RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKA 215 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999997755889999887765 444 6999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=320.17 Aligned_cols=209 Identities=24% Similarity=0.358 Sum_probs=171.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999999887 8999999998754322 35699999998888999
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||.||+.+...... .. . +. ..... ...++.+++.+||++..++.+++
T Consensus 101 tv~e~l~~~~~~~~-~~-~-------------~~-~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA-L-------------GR-FGAAD--------------REKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCccccc-cc-c-------------cC-CCHHH--------------HHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987532100 00 0 00 00000 00135578888998777776654
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998765578888888765 4777899999999999
Q ss_pred eEEEecChhHH
Q 045902 423 EIVYQGPREYV 433 (1472)
Q Consensus 423 ~iv~~G~~~~~ 433 (1472)
++++.|+.+++
T Consensus 225 ~i~~~~~~~~~ 235 (265)
T PRK10575 225 EMIAQGTPAEL 235 (265)
T ss_pred eEEEecCHHHh
Confidence 99999998765
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=316.57 Aligned_cols=203 Identities=26% Similarity=0.355 Sum_probs=167.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC------C---CCCceEEEEcCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE------F---VPQRTCAYISQHDL 257 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~d~ 257 (1472)
.+|+|+|+.+++||+++|+|||||||||||++|+|..+++ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999999887 8999999997631 1 11356999999999
Q ss_pred CCCCCCHHHHHHHhh-hccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccc
Q 045902 258 HHGEMTVRETLDFSG-RCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIM 336 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 336 (1472)
+++.+||+||+.+.. ...+.. .. +. ...++.+++.+||+...++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~----------~~----------~~--------------~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLS----------KD----------QA--------------LARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC----------HH----------HH--------------HHHHHHHHHHcCChhhhhCC
Confidence 999999999996531 111100 00 00 00135578889998777766
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
++ .|||||||||+||||++.+|++++|||||+|||..++..+.+.|+++.+ .+.|++++.|++. ++.+++|++
T Consensus 139 ~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i 211 (242)
T PRK11124 139 PL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRV 211 (242)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEE
Confidence 54 5999999999999999999999999999999999999999999999865 5788888877764 667889999
Q ss_pred EEecCCeEEEecChhHH
Q 045902 417 ILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~ 433 (1472)
++|.+|+++++|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999987754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=316.84 Aligned_cols=213 Identities=23% Similarity=0.301 Sum_probs=167.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G~ 954 (1472)
+.++|+++.. +++.+|+|+|++|++|+++||+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~-------------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 5 IKIRGVNFFY-------------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred EEEEEEEEEE-------------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 5567776554 2346999999999999999999999999999999999987632 13699999998
Q ss_pred cCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc----hHHHHHHHHHcccccccccccCCCCCCCCC
Q 045902 955 PKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK----DMFVEEVMELVEMKALRNSLVGLPGVDGLS 1024 (1472)
Q Consensus 955 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~----~~~~~~v~~~l~l~~~~~~~~~~~~~~~LS 1024 (1472)
++.. ...++.++|++|++.+++. |++||+.+....+. .. +...+++++.+++.+....... ..+..||
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS 149 (251)
T PRK14249 72 NIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGLALS 149 (251)
T ss_pred EccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcccCC
Confidence 7532 2346779999999988875 99999988654322 11 1234555666665421111111 1245799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|.+ |++++
T Consensus 150 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~ 226 (251)
T PRK14249 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVE 226 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEE
Confidence 999999999999999999999999999999999999999999985 5899999999976 46778999999985 78888
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|+.
T Consensus 227 ~~~~ 230 (251)
T PRK14249 227 YGRT 230 (251)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=319.02 Aligned_cols=215 Identities=23% Similarity=0.300 Sum_probs=172.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G 953 (1472)
.+.++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 567888877652 356999999999999999999999999999999999986531 3589999999
Q ss_pred ccCCh----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHcccccccccccCCCCCCCCC
Q 045902 954 YPKKQ----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLS 1024 (1472)
Q Consensus 954 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LS 1024 (1472)
.++.. ...++.++|++|++.+++ .|++||+.+...... +.. ...+++++.+++.+..+.... ..+..||
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LS 165 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLS 165 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCC
Confidence 87532 234567899999988887 899999987543221 211 223566777777543221111 1245799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.+ |+++.
T Consensus 166 gGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~ 242 (276)
T PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVE 242 (276)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999976 589999999976 46788999999985 78998
Q ss_pred EcCCC
Q 045902 1105 AGPLG 1109 (1472)
Q Consensus 1105 ~g~~~ 1109 (1472)
.|+..
T Consensus 243 ~g~~~ 247 (276)
T PRK14271 243 EGPTE 247 (276)
T ss_pred eCCHH
Confidence 88753
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=312.16 Aligned_cols=190 Identities=26% Similarity=0.383 Sum_probs=161.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~~~~~ 976 (1472)
+.+|+|+||++++|+++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 579999999999999999999999999999999999876 458999999987532 134567999999999998
Q ss_pred CCCHHHHHHHHHHcCC--Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 977 NVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
.+|+.||+.+...... ..+ ..++++++.+++.+..+... ..||+|||||++||++|+.+|++|+|||||+
T Consensus 96 ~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~ 170 (220)
T TIGR02982 96 FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTA 170 (220)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 8999999988654331 112 34677888888876655543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1052 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|.+ |++
T Consensus 171 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 171 ALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999976 4899999999975 4588999999985 554
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=314.68 Aligned_cols=206 Identities=24% Similarity=0.296 Sum_probs=165.7
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEEcCeeCCCCCC-CceEEEEcCCCC--CCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL-RVSGRVTYCGHELTEFVP-QRTCAYISQHDL--HHGEM 262 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 262 (1472)
.+|+|+|+.+++||+++|+||||||||||+++|+|.+++.. ..+|+|.++|++++.... ++.++|++|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 58999999999999999999999999999999999998710 028999999998764322 257999999974 44668
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc---cccccccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI---CADIMVGN 339 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~---~~dt~vg~ 339 (1472)
|+.+++.+.++..+.. ..+ ...+.+++.+||.+ ..++.+
T Consensus 97 ~~~~~~~~~~~~~~~~----------~~~--------------------------~~~~~~l~~~~l~~~~~~~~~~~-- 138 (254)
T PRK10418 97 TMHTHARETCLALGKP----------ADD--------------------------ATLTAALEAVGLENAARVLKLYP-- 138 (254)
T ss_pred cHHHHHHHHHHHcCCC----------hHH--------------------------HHHHHHHHHcCCCChhhhhhcCC--
Confidence 9999986643211100 000 01345778888875 345444
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
..|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++..+.|++++.|++. ++.+++|++++|
T Consensus 139 ---~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l 214 (254)
T PRK10418 139 ---FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVM 214 (254)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEE
Confidence 4599999999999999999999999999999999999999999999987656788888877654 567889999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988763
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=313.40 Aligned_cols=206 Identities=27% Similarity=0.422 Sum_probs=173.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999999887 8999999998765433 3579999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.+.....+.. ... .. ...+.+++.+|+....|+.++ .
T Consensus 90 ~enl~~~~~~~~~~----------~~~----------~~--------------~~~~~~l~~~~l~~~~~~~~~-----~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHP----------KAK----------IK--------------ARVEELLELVQLEGLGDRYPN-----Q 130 (237)
T ss_pred HHHHHhHHHhcCCC----------HHH----------HH--------------HHHHHHHHHcCCHhHhhCChh-----h
Confidence 99998764322110 000 00 013457788888777776655 4
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
||||||||++||++++.+|++++|||||+|||..+...+.+.|+++++..++|+|++.|++. ++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987655789999888764 67889999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=322.34 Aligned_cols=213 Identities=25% Similarity=0.344 Sum_probs=168.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---CeeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GYIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~G 953 (1472)
.+.++++++.+. ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 467888876542 24699999999999999999999999999999999998642 13589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc--hHHHHHHHHHcccccc-cccccCCCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK--DMFVEEVMELVEMKAL-RNSLVGLPGVDGLS 1024 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~--~~~~~~v~~~l~l~~~-~~~~~~~~~~~~LS 1024 (1472)
.++.. ...++.++|++|++.+++. |+.||+.+....+. +. +..++++++.+++.+. .+.. . ..+..||
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~-~~~~~LS 182 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQL-D-SSGLDLS 182 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHH-h-CCcccCC
Confidence 87531 2345679999999888775 99999987654322 21 2345667777776421 1111 1 1235799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE-EecCcEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGHVI 1103 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~-l~~gg~v~ 1103 (1472)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++ |+ +|+++
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~-~G~i~ 259 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLT-GGELV 259 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEee-CCEEE
Confidence 9999999999999999999999999999999999999999999976 489999999976 46678999764 56 57888
Q ss_pred EEcCC
Q 045902 1104 YAGPL 1108 (1472)
Q Consensus 1104 ~~g~~ 1108 (1472)
..|+.
T Consensus 260 ~~g~~ 264 (285)
T PRK14254 260 EFDDT 264 (285)
T ss_pred EeCCH
Confidence 88874
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=319.90 Aligned_cols=210 Identities=23% Similarity=0.332 Sum_probs=171.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 36999999999999999999999999999999999999887 8999999998765432 34699999999999999
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.+...-... .. . . ..... ...++.+++.+||++..|+.+.
T Consensus 97 tv~~~~~~~~~~~~~-----~~---~-------~-~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~---- 142 (265)
T PRK10253 97 TVQELVARGRYPHQP-----LF---T-------R-WRKED--------------EEAVTKAMQATGITHLADQSVD---- 142 (265)
T ss_pred cHHHHHHhCcccccc-----cc---c-------C-CCHHH--------------HHHHHHHHHHcCCHHHhcCCcc----
Confidence 999999875210000 00 0 0 00000 0013557888999877776654
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|++|
T Consensus 143 -~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G 220 (265)
T PRK10253 143 -TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREG 220 (265)
T ss_pred -cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 499999999999999999999999999999999999999999999997655788888877654 788999999999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
++++.|+.+++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999987764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=320.03 Aligned_cols=204 Identities=27% Similarity=0.374 Sum_probs=168.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCCC-CCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHDL-HHG 260 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 260 (1472)
.+|+|+|+++++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5899999999999999999999999999999999999887 899999999875211 1357999999963 344
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.+||+||+.+.....+. .+.+. ...+..+++.+||++..|+.+++
T Consensus 93 ~~tv~e~i~~~~~~~~~----------~~~~~------------------------~~~~~~~l~~~~L~~~~~~~~~~- 137 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL----------SKEEV------------------------EKRVKEALKAVGMEGFENKPPHH- 137 (275)
T ss_pred cccHHHHHHHHHHHcCC----------CHHHH------------------------HHHHHHHHHHCCCchhhcCChhh-
Confidence 57999999875321110 00000 00134578899998888877654
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++++ .+.|++++.|++ .++.+++|++++|+
T Consensus 138 ----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~ 211 (275)
T PRK13639 138 ----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMS 211 (275)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999876 478888887764 46778999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=321.94 Aligned_cols=213 Identities=21% Similarity=0.325 Sum_probs=168.3
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-CeeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GYIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~G 953 (1472)
.+.++++++.+. +..+|+|+|++|++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 577888876542 2469999999999999999999999999999999999643 1 12589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc-h---HHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK-D---MFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~-~---~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
.++.. ...++.++|++|++.+++. ||.||+.+....+. .. . ..+.++++.+++.. +.+... ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~--~~~~~ 182 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD--KNALG 182 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhh--CChhh
Confidence 87532 1345679999999988875 99999988654321 11 1 23445666666531 112111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+ |++
T Consensus 183 LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i 259 (286)
T PRK14275 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVL 259 (286)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 689999999976 46778999999985 789
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 260 ~~~g~~ 265 (286)
T PRK14275 260 VEHAPT 265 (286)
T ss_pred EEeCCH
Confidence 888875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=313.27 Aligned_cols=201 Identities=22% Similarity=0.385 Sum_probs=168.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHHHHH
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999887 8999999998765432 357999999999999999999998
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
+.... .... .+.. ...++.+++.+||++..|+.+.. |||||
T Consensus 94 ~~~~~-~~~~--------~~~~-------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKL--------NAAQ-------------------------REKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccCC--------CHHH-------------------------HHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 0000 0000 01135578889998877877654 99999
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecC
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~ 429 (1472)
||||+||++++.+|++++|||||+|||..++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999987655789888887764 6778999999999999999999
Q ss_pred hhHHH
Q 045902 430 REYVL 434 (1472)
Q Consensus 430 ~~~~~ 434 (1472)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=316.84 Aligned_cols=213 Identities=27% Similarity=0.327 Sum_probs=169.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G 953 (1472)
.+.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWY-------------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEE-------------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 46777877654 2346999999999999999999999999999999999975421 2479999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC--c---hHHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP--K---DMFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~--~---~~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. . +..++++++.+++.+ +.+.. . .....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~-~~~~~ 149 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL-H-DSALS 149 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHh-h-cChhh
Confidence 87632 2345678999999988875 999999987543321 1 123556667766642 11111 1 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i 226 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKL 226 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999975 689999999976 46678999999985 788
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 227 ~~~g~~ 232 (253)
T PRK14261 227 IEFDKT 232 (253)
T ss_pred EEcCCH
Confidence 888875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=310.50 Aligned_cols=199 Identities=23% Similarity=0.309 Sum_probs=172.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC---h----hcccceeEEeccCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK---Q----ETFARISGYCEQNDIHS 975 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~---~----~~~~~~~gyv~Q~~~~~ 975 (1472)
..-++|+|++|+.||++.|||-||||||||+++|.++.. +..|+|.++|.++. . +-.++.+++|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 346899999999999999999999999999999999887 46999999998753 2 22346789999999999
Q ss_pred CCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 976 PNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
|+.||.||..|+..++. +.. +...+.++.+||.++.+.. ++.|||||||||.|||||+.+|+||+||||+|
T Consensus 119 PhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 119 PHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred cchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 99999999999988764 333 3455667777777777665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1052 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
+|||--+..+++.|.++.++ ++|||++|||.+ |.+.+-||+.+|+ +|+++..|++.+
T Consensus 194 ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 194 ALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 99999999999999998655 899999999987 6888999999997 589999998743
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=316.97 Aligned_cols=208 Identities=23% Similarity=0.341 Sum_probs=165.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEEcCeeCCC--CC---CCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTE--FV---PQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--~~---~~~~~~yv~Q~d~~~ 259 (1472)
++|+|+|+.+++||+++|+||||||||||+++|+|.++++ ...+|+|+++|+++.. .. .++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5899999999999999999999999999999999998762 1138999999998752 21 235799999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc----cccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI----CADI 335 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 335 (1472)
+.+||.||+.+.....+..... .+.+ ..++.+++.+||.. ..++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~------------------~~~~--------------~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSK------------------KELD--------------ERVEWALKKAALWDEVKDRLND 145 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCH------------------HHHH--------------HHHHHHHHHcCCccchhhhhcc
Confidence 9999999998764321110000 0000 01244667777642 2343
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
. ...|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++.+++|+
T Consensus 146 ~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~ 217 (253)
T PRK14267 146 Y-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSDY 217 (253)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCCE
Confidence 3 456999999999999999999999999999999999999999999999864 578888877654 67789999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
|++|++|++++.|+.+++.
T Consensus 218 i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 218 VAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=315.40 Aligned_cols=213 Identities=24% Similarity=0.349 Sum_probs=166.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|++|++||++||+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 366777776542 2469999999999999999999999999999999999753 21 2489999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch----HHHHHHHHHccccc-ccccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD----MFVEEVMELVEMKA-LRNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~----~~~~~v~~~l~l~~-~~~~~~~~~~~~~ 1022 (1472)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ... ....+.++.+++.. +.+... ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~--~~~~~ 148 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLH--ESALS 148 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHh--cCccc
Confidence 87631 234567999999988887 699999987654332 111 22344556665531 111111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|++ |++
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i 225 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNL 225 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999965 589999999976 46788999999985 788
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 226 ~~~~~~ 231 (252)
T PRK14255 226 IEFADT 231 (252)
T ss_pred EEeCCH
Confidence 888864
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=311.12 Aligned_cols=200 Identities=28% Similarity=0.422 Sum_probs=160.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCC--CCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHH--GEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 263 (1472)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999887 8999999987642 345799999998663 3489
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.+....... . .. . ...+. ....+.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~-~-~~---~-----------~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKG-L-FR---R-----------LSKAD--------------KAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhccccccc-c-cc---C-----------CCHHH--------------HHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999875321100 0 00 0 00000 01135578889998777766654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999999876 5788888877654 677899999999886
Q ss_pred EEEec
Q 045902 424 IVYQG 428 (1472)
Q Consensus 424 iv~~G 428 (1472)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=319.27 Aligned_cols=205 Identities=28% Similarity=0.344 Sum_probs=167.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCCC-CC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHDL-HH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 259 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999987 899999999874211 1356999999875 34
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
...|+.||+.+.....+.. .. +.. ..++.+++.+||++..++.++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~~----------~~~--------------~~~~~~l~~~~l~~~~~~~~~- 135 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------EA----------EIT--------------RRVDEALTLVDAQHFRHQPIQ- 135 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------HH----------HHH--------------HHHHHHHHHcCCHhHhcCCch-
Confidence 5568999998753321110 00 000 013457888899877776665
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|
T Consensus 136 ----~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l 209 (271)
T PRK13638 136 ----CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVL 209 (271)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999875 478888877665 4677899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987763
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=349.11 Aligned_cols=208 Identities=25% Similarity=0.364 Sum_probs=169.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 46899999999999999999999999999999999999998 8999999999877643 4689999999988865
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++||+.+.... .. ++++.+..+.+ ..+..++.+ ++..||.+| +.+
T Consensus 407 ti~~Ni~~~~~~---~~-------------------~~~~~~~~~~~---------~~~~~i~~l--~~gl~t~~~-~~g 452 (544)
T TIGR01842 407 TVAENIARFGEN---AD-------------------PEKIIEAAKLA---------GVHELILRL--PDGYDTVIG-PGG 452 (544)
T ss_pred cHHHHHhccCCC---CC-------------------HHHHHHHHHHh---------ChHHHHHhC--ccccccccC-CCc
Confidence 999999753210 00 01111111111 122334433 445688887 467
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.. .++|+|++.|++. ..+.+|+|++|++|
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDG 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999998753 4789999888874 56789999999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
++++.|+++++.
T Consensus 530 ~i~~~g~~~~l~ 541 (544)
T TIGR01842 530 RIARFGERDEVL 541 (544)
T ss_pred EEEeeCCHHHHh
Confidence 999999998875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=316.52 Aligned_cols=197 Identities=27% Similarity=0.381 Sum_probs=156.2
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 469999999999999999999999999999999999876 358999999987532 334567999999987764 69
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHccccccccccc-C-----CCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV-G-----LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~-~-----~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
|.||+.+... ........+.++..++.++.+... + ...+..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 92 v~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~L 169 (237)
T cd03252 92 IRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169 (237)
T ss_pred HHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 9999976432 111222333344444333222110 0 1124589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+.+.|+++++ |+|||+++|+++. + +.+|++++|++ |++++.|+.
T Consensus 170 D~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 170 DYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999964 8999999999863 4 56999999985 789988875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=317.16 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=164.5
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+|+||||++++||+++|+||||||||||+++|+|..+ .+|+|.++|.+... ...++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999874 27999999987532 23345689999998888889999
Q ss_pred HHHHHHHHcCCCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhh-------CCCCccccCCCC
Q 045902 982 ESLLYSAWLRLPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTS 1051 (1472)
Q Consensus 982 e~l~~~~~l~~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~-------~p~il~LDEPTs 1051 (1472)
||+.+......+. ...++++++.+++.+..++.. ..||||||||++||++|+. +|++|+|||||+
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~ 162 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMN 162 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcc
Confidence 9998753222222 134677888888876555543 4799999999999999997 679999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1052 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 163 SLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999877999999999976 47788999999985 7898888753
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=319.11 Aligned_cols=216 Identities=24% Similarity=0.308 Sum_probs=171.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--------CCceEEEEcCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--------PQRTCAYISQHDL 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--------~~~~~~yv~Q~d~ 257 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+...+|+|.++|+++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35999999999999999999999999999999999999875223699999999875421 1346999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
+++.+||+||+.+....... ..... ... ..++. ...++.+++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---------~~~~~--~~~-~~~~~--------------~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---------FWRTC--FSW-FTREQ--------------KQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc---------chhhh--ccc-ccHHH--------------HHHHHHHHHHcCCHHHHhCCc
Confidence 99999999999875321000 00000 000 00000 012356788999987777766
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
++ |||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++. ++.+++|+++
T Consensus 151 ~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 ST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred cc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 54 99999999999999999999999999999999999999999999998656789888887653 6778999999
Q ss_pred EecCCeEEEecChhHH
Q 045902 418 LLSEGEIVYQGPREYV 433 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~ 433 (1472)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=346.20 Aligned_cols=123 Identities=21% Similarity=0.295 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-cccccCCCCCCCCCHHHHHHHHHHHHHhh---CCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-RNSLVGLPGVDGLSTEQRKRLTIAVELVA---NPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-~~~~~~~~~~~~LSgGqrqRl~iA~aL~~---~p~il~LDEPTsg 1052 (1472)
.+||.|.+.|...+.. -....++++.++|..+ .++. ...|||||+||+.||++|+. +|++++|||||+|
T Consensus 789 ~~tv~e~~~f~~~~~~--i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsg 861 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS--ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTG 861 (924)
T ss_pred CCcHHHHHHHHHhccc--hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCC
Confidence 5677788777654321 1234467777777543 2332 35799999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~ 1108 (1472)
||+.....+++.|+++.++|.|||+++|+++ ..+.+|+++.|. +||++++.|+.
T Consensus 862 LD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 862 LHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 9999999999999999888999999999975 446799999994 57899999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=318.83 Aligned_cols=215 Identities=21% Similarity=0.262 Sum_probs=168.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~G 953 (1472)
.+.++|+++.+. +..+|+|+|++|++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 467788776542 246999999999999999999999999999999999975321 2589999999
Q ss_pred ccCC-----hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-C--chHHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 954 YPKK-----QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-P--KDMFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 954 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
.++. ...+++.++|++|++.+++ .|+.||+.+....+. . .++.++++++.+++.+..+.... ..+..|||
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSg 154 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLK-QSGLSLSG 154 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhc-CCcccCCH
Confidence 8752 1234567999999988877 499999987654321 1 11334555666666321111111 12457999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEec-------
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR------- 1098 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~------- 1098 (1472)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++
T Consensus 155 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~ 232 (264)
T PRK14243 155 GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGG 232 (264)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999976 589999999986 57889999999972
Q ss_pred -CcEEEEEcCC
Q 045902 1099 -GGHVIYAGPL 1108 (1472)
Q Consensus 1099 -gg~v~~~g~~ 1108 (1472)
.|+++..|+.
T Consensus 233 ~~g~i~~~~~~ 243 (264)
T PRK14243 233 RYGYLVEFDRT 243 (264)
T ss_pred cCceEEEeCCH
Confidence 4799998875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=301.88 Aligned_cols=171 Identities=42% Similarity=0.731 Sum_probs=152.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS--DKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999999 776 8999999998865333567999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999653110 0
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++++ .++|+|++.|++..++.+.+|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 3999999999999999999999999999999999999999999999865 488999999988767888999999999999
Q ss_pred EEEec
Q 045902 424 IVYQG 428 (1472)
Q Consensus 424 iv~~G 428 (1472)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=311.54 Aligned_cols=190 Identities=26% Similarity=0.382 Sum_probs=155.5
Q ss_pred ccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 899 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.++++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~ 99 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPEL 99 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCC
Confidence 4556789999999999999999999999999999999999876 458999999976421 11123345679
Q ss_pred CHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 979 TIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
||+||+.+...... ... ...+++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999987654321 112 24566777788776666543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+++..|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999877899999999976 46678999999985 7887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=314.76 Aligned_cols=206 Identities=20% Similarity=0.292 Sum_probs=162.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEEcCeeCCCC--C---CCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEF--V---PQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 259 (1472)
.+|+|+|+.+++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... . .++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2111389999999987531 1 135799999998888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc----ccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD----ICADI 335 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 335 (1472)
+ +||+||+.+......... .. +.+ ..++.+++.+||. +..+.
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~---------~~----------~~~--------------~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS---------RA----------EMD--------------ERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC---------HH----------HHH--------------HHHHHHHHHcCCChhhHHHHhc
Confidence 7 899999987643211000 00 000 0134466777764 22343
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
. ...|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~ 224 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCSDY 224 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCE
Confidence 3 445999999999999999999999999999999999999999999999853 57888877765 467789999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
+++|++|+++..|+.+++.
T Consensus 225 i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 225 TAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=351.26 Aligned_cols=212 Identities=25% Similarity=0.313 Sum_probs=175.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSF-------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 36677776654 23569999999999999999999999999999999999876 3589999999876
Q ss_pred Chh----cccceeEEeccCCCCCCCCCHHHHHHHHHHc----CC----Cc---hHHHHHHHHHcccccccccccCCCCCC
Q 045902 957 KQE----TFARISGYCEQNDIHSPNVTIYESLLYSAWL----RL----PK---DMFVEEVMELVEMKALRNSLVGLPGVD 1021 (1472)
Q Consensus 957 ~~~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l----~~----~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~ 1021 (1472)
... ..++.+||++|++.+++.+||+|++.+.... .. +. ...++++++.+++.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 421 1235689999999999999999999875321 11 11 134567888888876666554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1022 ~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999888999999999976 46678999999985 78
Q ss_pred EEEEcCCCc
Q 045902 1102 VIYAGPLGR 1110 (1472)
Q Consensus 1102 v~~~g~~~~ 1110 (1472)
+++.|+..+
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 889887653
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=315.98 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=168.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--C-eeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-YIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~G 953 (1472)
.+.++|+++.+. .+.+|+|+|++|++||++||+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 366778776542 24699999999999999999999999999999999998642 1 2589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-C-ch---HHHHHHHHHcccccccccccCCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-P-KD---MFVEEVMELVEMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~-~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~L 1023 (1472)
.+... ...++.++|++|++.+++ .|++||+.+...... . .+ ..++++++.+++........ ......|
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~L 148 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNL-DRNAQAF 148 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHh-ccChhhC
Confidence 87532 234567999999988776 799999987543221 1 11 23556677777632100011 1124579
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|++ |+++
T Consensus 149 S~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~ 225 (251)
T PRK14251 149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLI 225 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999864 799999999976 46778999999985 7888
Q ss_pred EEcCC
Q 045902 1104 YAGPL 1108 (1472)
Q Consensus 1104 ~~g~~ 1108 (1472)
..|+.
T Consensus 226 ~~~~~ 230 (251)
T PRK14251 226 EAGPT 230 (251)
T ss_pred EeCCH
Confidence 88874
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=317.95 Aligned_cols=208 Identities=26% Similarity=0.382 Sum_probs=170.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999887 8999999998754322 35699999999888889
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||.||+.++..... ... +..+ .+. ....+.+++.+||++..|+.++
T Consensus 92 tv~~~i~~~~~~~~-----~~~----------~~~~-~~~--------------~~~~~~~l~~~~l~~~~~~~~~---- 137 (255)
T PRK11231 92 TVRELVAYGRSPWL-----SLW----------GRLS-AED--------------NARVNQAMEQTRINHLADRRLT---- 137 (255)
T ss_pred cHHHHHHhccchhh-----hhc----------cCCC-HHH--------------HHHHHHHHHHcCCHHHHcCCcc----
Confidence 99999987531000 000 0000 000 0113457888899877777665
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|
T Consensus 138 -~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G 214 (255)
T PRK11231 138 -DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLN-QASRYCDHLVVLANG 214 (255)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHhcCEEEEEECC
Confidence 4999999999999999999999999999999999999999999999875 4788888887654 778899999999999
Q ss_pred eEEEecChhHH
Q 045902 423 EIVYQGPREYV 433 (1472)
Q Consensus 423 ~iv~~G~~~~~ 433 (1472)
++++.|+.+++
T Consensus 215 ~i~~~~~~~~~ 225 (255)
T PRK11231 215 HVMAQGTPEEV 225 (255)
T ss_pred eEEEEcCHHHh
Confidence 99999998765
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=294.87 Aligned_cols=203 Identities=26% Similarity=0.422 Sum_probs=178.2
Q ss_pred ccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCC
Q 045902 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHS 975 (1472)
Q Consensus 899 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~ 975 (1472)
.++.+.+|+++|..|++|.+|+|+|||||||||||.+++++.+ ..+|+|.++|.++.. ...++.++..-|+....
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 3567889999999999999999999999999999999999876 458999999998643 45677788899998888
Q ss_pred CCCCHHHHHHHHHHc----CCCc--hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC
Q 045902 976 PNVTIYESLLYSAWL----RLPK--DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1049 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l----~~~~--~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP 1049 (1472)
..+||+|-+.|+..- |+.. ...++++++.++|.+++|+.. ..||||||||.-||+.|+.+.+.++||||
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCc
Confidence 899999999987432 2222 256899999999999999875 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1050 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1050 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
.++||...+..+|+.||+++++ |+|||++.||.+. .-.+.|+++.|++ |+++..|++++
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 9999999999999999999977 9999999999875 5567899999985 89999999864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=306.85 Aligned_cols=196 Identities=29% Similarity=0.420 Sum_probs=164.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 259 (1472)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999887 8999999998764332 35799999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+.+|+.||+.++...... .... +. ...++.+++.+||.+..++.+.
T Consensus 95 ~~~t~~~n~~~~~~~~~~---------~~~~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~- 140 (220)
T TIGR02982 95 GFLTARQNVQMALELQPN---------LSYQ----------EA--------------RERARAMLEAVGLGDHLDYYPH- 140 (220)
T ss_pred CCCCHHHHHHHHHHhccC---------CCHH----------HH--------------HHHHHHHHHHcCChhhhhcChh-
Confidence 999999999886432110 0000 00 0023557889999877776654
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++.|++. ..+.+|+|++|
T Consensus 141 ----~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 141 ----NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 599999999999999999999999999999999999999999999987656899999988874 56899999999
Q ss_pred cCCeE
Q 045902 420 SEGEI 424 (1472)
Q Consensus 420 ~~G~i 424 (1472)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=305.27 Aligned_cols=175 Identities=26% Similarity=0.346 Sum_probs=146.2
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-----hcccceeEEeccCCC-CC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-----ETFARISGYCEQNDI-HS 975 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~-~~ 975 (1472)
++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3569999999999999999999999999999999999876 358999999987531 134567899999973 33
Q ss_pred CCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 976 PNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
...|++||+.+..... .+.+ ..++++++.+++.+..++.. ..||||||||++|||||+.+|++|+|||||+
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~ 156 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 3579999998865432 2222 34567788888876666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1052 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
|||+.++..+.+.|++++++|+|||++||+++
T Consensus 157 ~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 157 GLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999877999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=301.61 Aligned_cols=159 Identities=31% Similarity=0.441 Sum_probs=142.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-----hcccceeEEeccCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-----ETFARISGYCEQNDIHSPN 977 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-----~~~~~~~gyv~Q~~~~~~~ 977 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 469999999999999999999999999999999999876 458999999987532 2345779999999988888
Q ss_pred CCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 978 VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
.|++|++.+. ||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 91 ~t~~~~l~~~-----------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~ 135 (178)
T cd03229 91 LTVLENIALG-----------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135 (178)
T ss_pred CCHHHheeec-----------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 9999987542 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1058 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 136 ~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 136 RREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 99999999999877 899999999975 466689999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=309.16 Aligned_cols=195 Identities=25% Similarity=0.372 Sum_probs=161.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC--C---CCceEEEEcCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF--V---PQRTCAYISQHDLHHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~~~~ 260 (1472)
+.+|+|+|+.++||++++|+|||||||||||++|+|.++++ +|+|.++|+++... . .++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 35999999999999999999999999999999999999887 89999999987431 1 1357999999999999
Q ss_pred CCCHHHHHHHhhhc-cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 261 EMTVRETLDFSGRC-LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
.+||+||+.+.... .+. ...+ . ...++.+++.+||++..++.+.
T Consensus 90 ~~t~~e~l~~~~~~~~~~----------~~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~- 134 (213)
T cd03262 90 HLTVLENITLAPIKVKGM----------SKAE----------A--------------EERALELLEKVGLADKADAYPA- 134 (213)
T ss_pred CCcHHHHHHhHHHHhcCC----------CHHH----------H--------------HHHHHHHHHHcCCHhHhhhCcc-
Confidence 99999999875321 110 0000 0 0013456788899877776665
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|
T Consensus 135 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l 208 (213)
T cd03262 135 ----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFM 208 (213)
T ss_pred ----ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999976 578888877654 4777899999999
Q ss_pred cCCeE
Q 045902 420 SEGEI 424 (1472)
Q Consensus 420 ~~G~i 424 (1472)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=317.53 Aligned_cols=213 Identities=23% Similarity=0.286 Sum_probs=167.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-CeeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GYIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 477888876542 2469999999999999999999999999999999999764 1 13589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch----HHHHHHHHHcccc-cccccccCCCCCCC
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD----MFVEEVMELVEMK-ALRNSLVGLPGVDG 1022 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~----~~~~~v~~~l~l~-~~~~~~~~~~~~~~ 1022 (1472)
.+... ..+++.++|++|++.+++ .|+.||+.+....+ .... ..+.++++.+++. ++.+.... .+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~ 167 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHD--NAYG 167 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhc--Cccc
Confidence 87631 234567999999988877 49999998765432 1111 1234445555432 12221111 2457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 168 LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i 244 (271)
T PRK14238 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYV 244 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999975 799999999976 46778999999985 788
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 245 ~~~g~~ 250 (271)
T PRK14238 245 NEYDDT 250 (271)
T ss_pred EEeCCH
Confidence 888875
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=356.73 Aligned_cols=209 Identities=23% Similarity=0.357 Sum_probs=177.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++|.++ +++.+|+|+|++++|||.+||+|+||||||||+++|+|..++ .+|+|.+||.++
T Consensus 340 ~i~~~~v~f~y~------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYR------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeC------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEh
Confidence 588999988763 123599999999999999999999999999999999999874 489999999886
Q ss_pred C---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCHH
Q 045902 957 K---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSgG 1026 (1472)
+ ...+++.++||+|++.+++. |++||+.++. ...++.++++++.+++.+.. |+.+|.. ...||||
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~-g~~LSGG 480 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR---DISEEQVWQALETVQLAELARSLPDGLYTPLGEQ-GNNLSVG 480 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC---CCCHHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHH
Confidence 4 35678899999999999876 9999998863 22456677888888876543 3444443 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.+ ++|||+++|+++ ....+|++++|++ |+++..|
T Consensus 481 qrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~-G~i~~~G 556 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR-GQAVEQG 556 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999864 699999999974 5778999999985 7999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 557 ~~ 558 (592)
T PRK10790 557 TH 558 (592)
T ss_pred CH
Confidence 85
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=312.11 Aligned_cols=205 Identities=27% Similarity=0.426 Sum_probs=161.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 45899999999999999999999999999999999999887 8999999998754322 356999999987764 7
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh--CCcccccccccCc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL--GLDICADIMVGNE 340 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l--gL~~~~dt~vg~~ 340 (1472)
||+||+.+... .. .. + .+. ... .. ...+..++.+ |++...+..
T Consensus 91 tv~~nl~~~~~--~~-~~-~---~~~---------------~~~---~~------~~~~~~l~~l~~~~~~~~~~~---- 135 (237)
T cd03252 91 SIRDNIALADP--GM-SM-E---RVI---------------EAA---KL------AGAHDFISELPEGYDTIVGEQ---- 135 (237)
T ss_pred hHHHHhhccCC--CC-CH-H---HHH---------------HHH---HH------cCcHHHHHhCcccccchhhcC----
Confidence 99999987432 10 00 0 000 000 00 0112344444 454444433
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
+..|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++ +.+|++++|+
T Consensus 136 -~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~-~~~d~v~~l~ 210 (237)
T cd03252 136 -GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TV-KNADRIIVME 210 (237)
T ss_pred -CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 455999999999999999999999999999999999999999999999853 789999888875 44 5699999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999988764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=306.69 Aligned_cols=199 Identities=21% Similarity=0.297 Sum_probs=165.2
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-CCceEEEEcCCCCCCCCCCHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-PQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+++|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 357999999999999999999999999999999999987 899999999876432 2467999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.+...... ... ... ....+.+++.+||++..++.+. .||
T Consensus 90 n~~~~~~~~~-~~~--------~~~-------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN--------AEQ-------------------------QEKVVDAAQQVGIADYLDRLPE-----QLS 130 (213)
T ss_pred HHHhHhhccC-Ccc--------HHH-------------------------HHHHHHHHHHcCcHHHhhCCcc-----cCC
Confidence 9976432100 000 000 0013457888999877776665 499
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+..+.|+|++.|++ .++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998765578888887765 46778999999999999998
Q ss_pred ecC
Q 045902 427 QGP 429 (1472)
Q Consensus 427 ~G~ 429 (1472)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=318.91 Aligned_cols=199 Identities=25% Similarity=0.371 Sum_probs=164.7
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeEEeccCC--CC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ------ETFARISGYCEQND--IH 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~~--~~ 974 (1472)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 579999999999999999999999999999999999876 458999999987532 12456799999997 35
Q ss_pred CCCCCHHHHHHHHHHc--CCCch---HHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccC
Q 045902 975 SPNVTIYESLLYSAWL--RLPKD---MFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l--~~~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDE 1048 (1472)
.+..|+.|++.+.... ..... ..++++++.+++. ...+.. ...||||||||++||++|+.+|++|+|||
T Consensus 103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lllLDE 177 (268)
T PRK10419 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLILDE 177 (268)
T ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6789999998764321 11111 3467788888875 344443 34799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1049 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1049 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|.+ |++++.|+..+
T Consensus 178 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~ 238 (268)
T PRK10419 178 AVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVGD 238 (268)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChhh
Confidence 99999999999999999999765 899999999976 46678999999985 78999988643
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=357.41 Aligned_cols=212 Identities=24% Similarity=0.336 Sum_probs=177.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.++++|++|.++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEh
Confidence 5889999887631 225699999999999999999999999999999999998874 589999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgG 1026 (1472)
++ ..+++.++|++|++.+++ -|++||+.++.. ....++.++++++..++.+. .|+.+|..| ..||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~-~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g-~~LSGG 484 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART-EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG-VLLSGG 484 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC-CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCC-CcCCHH
Confidence 43 466788999999999886 599999987421 11234567777777776543 245555443 579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|||++||+++ ..+.||++++|++ |+++..|
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~-g~i~e~g 560 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED-GEIVERG 560 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEEeC
Confidence 9999999999999999999999999999999999999999985 4799999999974 6788999999985 7999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 561 ~~ 562 (582)
T PRK11176 561 TH 562 (582)
T ss_pred CH
Confidence 84
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=313.26 Aligned_cols=211 Identities=22% Similarity=0.301 Sum_probs=165.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEEcCeeCCCCC-----CCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTEFV-----PQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 258 (1472)
+++|+|+|+++++||+++|+|||||||||||++|+|.+++. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998631 123899999999875321 14579999999888
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++ .||+||+.++.+..+... + .+.+ ..++.+++.+||.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~----------~~~~--------------~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------K----------KVLD--------------EIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------H----------HHHH--------------HHHHHHHHHcCCCchhhhhh-
Confidence 87 699999988643211100 0 0000 01244677777754322222
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+...+.||||||||++|||+++.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++.+++|++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhcCEEEE
Confidence 234566999999999999999999999999999999999999999999999853 578888877654 67889999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=346.65 Aligned_cols=202 Identities=22% Similarity=0.355 Sum_probs=167.7
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh----cccceeEEeccCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE----TFARISGYCEQNDIHSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~----~~~~~~gyv~Q~~~~~~~ 977 (1472)
++.+|+|||+++++||++||+||||||||||+++|+|..++++.+|+|.++|.++... ..++.+||++|++.+++.
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 3569999999999999999999999999999999999876423589999999876431 123568999999988999
Q ss_pred CCHHHHHHHHHHcC-----CCch---HHHHHHHHHccccccc-ccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccC
Q 045902 978 VTIYESLLYSAWLR-----LPKD---MFVEEVMELVEMKALR-NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1048 (1472)
Q Consensus 978 lTv~e~l~~~~~l~-----~~~~---~~~~~v~~~l~l~~~~-~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDE 1048 (1472)
+||.|++.+..... .+.+ ..++++++.+++.+.. +.. +..|||||||||+||++|+.+|++|+|||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iA~al~~~p~lllLDE 167 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLVEIAKALNKQARLLILDE 167 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999998764322 1111 3456778888776543 232 34799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1049 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1049 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+...
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 99999999999999999999888999999999976 46678999999986 68888887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=305.90 Aligned_cols=182 Identities=24% Similarity=0.320 Sum_probs=154.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCCCCCH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|+..+++..||
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCH
Confidence 569999999999999999999999999999999999876 458999999987642 3456779999999888889999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHH
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~ 1060 (1472)
+|++.+..... ..+..++++++.+++.+..+... ..||+|||||++|||+|+.+|++|+|||||+|||+.++..
T Consensus 92 ~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~ 165 (200)
T PRK13540 92 RENCLYDIHFS-PGAVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLT 165 (200)
T ss_pred HHHHHHHHhcC-cchHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHH
Confidence 99998764322 12345678888888876555443 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEE
Q 045902 1061 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1094 (1472)
Q Consensus 1061 i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~ 1094 (1472)
+.+.|++++++|+|||+++|++. ..+.+|..+
T Consensus 166 l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 166 IITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999998777999999999965 445566544
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=318.29 Aligned_cols=210 Identities=20% Similarity=0.277 Sum_probs=170.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++. +...+|+|||++|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++.
T Consensus 3 i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~ 68 (275)
T cd03289 3 MTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhh
Confidence 567787766531 22459999999999999999999999999999999999875 3799999998763
Q ss_pred h---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCC------CCCCCCCHHHH
Q 045902 958 Q---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGL------PGVDGLSTEQR 1028 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~------~~~~~LSgGqr 1028 (1472)
. ...++.++|++|++.+++. |++||+..... ..++.+.++++.+++.+..+...+. .+...||||||
T Consensus 69 ~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 69 SVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK---WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred hCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC---CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 2 3456789999999998874 99999964221 1234566778888887665554321 12346999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. .++|||+++|+++ ....+|++++|++ |++++.|++
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G~i~~~g~~ 220 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-NKVRQYDSI 220 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-CeEeecCCH
Confidence 99999999999999999999999999999999999999875 4899999999975 3456999999985 789999986
Q ss_pred C
Q 045902 1109 G 1109 (1472)
Q Consensus 1109 ~ 1109 (1472)
.
T Consensus 221 ~ 221 (275)
T cd03289 221 Q 221 (275)
T ss_pred H
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=380.76 Aligned_cols=213 Identities=23% Similarity=0.381 Sum_probs=175.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---------------------------------------
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--------------------------------------- 226 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--------------------------------------- 226 (1472)
.++|+|+|+.|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999972
Q ss_pred ------------CCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHH
Q 045902 227 ------------LRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRRE 291 (1472)
Q Consensus 227 ------------~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 291 (1472)
...+|+|++||+++.+... ++.++||+|++.+| +.||+|||.|+..-
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~~----------------- 1322 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKED----------------- 1322 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCCC-----------------
Confidence 0138999999999988764 57899999999888 57999999886210
Q ss_pred HhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCC
Q 045902 292 KDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEI 371 (1472)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEp 371 (1472)
..+++++++.+.+.++ |.| -.|++..||.|| +.+..||||||||++|||||+.+|+||+||||
T Consensus 1323 -----at~eeI~~A~k~A~l~--------~fI---~~LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1323 -----ATREDVKRACKFAAID--------EFI---ESLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred -----CCHHHHHHHHHHcCCH--------HHH---HhCccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0122333333333221 222 357888999999 67788999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC----CeEE-EecChhHHHH
Q 045902 372 STGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE----GEIV-YQGPREYVLD 435 (1472)
Q Consensus 372 tsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~----G~iv-~~G~~~~~~~ 435 (1472)
||+||+.++..|.+.|+++....++|+|++.|++ ++.+.+|+|++|++ |+++ ++|+++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999999999999987533578998888876 56788999999999 9965 8999999863
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=315.31 Aligned_cols=208 Identities=28% Similarity=0.386 Sum_probs=169.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+.++|||+++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 36999999999999999999999999999999999999887 8999999998765432 34699999998888889
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.+...... .. ... +..+. ....+.+++.+||.+..|+.++.
T Consensus 91 tv~e~l~~~~~~~~---------~~------~~~-~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~--- 137 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SL------WAG-DSPHD--------------AAVVDRALARTELSHLADRDMST--- 137 (256)
T ss_pred CHHHHHHhcchhhh---------hh------ccC-CCHHH--------------HHHHHHHHHHcCcHhhhcCCccc---
Confidence 99999987421000 00 000 00000 00134577888998777776654
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.+++|+|++|++|
T Consensus 138 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 138 --LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999875 4788888887764 777899999999999
Q ss_pred eEEEecChhHH
Q 045902 423 EIVYQGPREYV 433 (1472)
Q Consensus 423 ~iv~~G~~~~~ 433 (1472)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999998765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=315.91 Aligned_cols=211 Identities=22% Similarity=0.347 Sum_probs=163.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEEcCeeCCCC--C---CCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTEF--V---PQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 259 (1472)
.+|+|+|+.|+||++++|+|||||||||||++|+|.+++. ...+|+|+++|+++... . .++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 5999999999999999999999999999999999998641 01289999999987532 1 235799999998888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+. ||.||+.|..+..+... .+. +.. ..++.+++.+||.+...... +
T Consensus 113 ~~-tv~enl~~~~~~~~~~~--------~~~----------~~~--------------~~~~~~l~~~~l~~~~~~~~-~ 158 (267)
T PRK14235 113 PK-SIYENVAYGPRIHGLAR--------SKA----------ELD--------------EIVETSLRKAGLWEEVKDRL-H 158 (267)
T ss_pred CC-cHHHHHHHHHHhccccc--------chH----------HHH--------------HHHHHHHHHcCCchhhhHHh-h
Confidence 74 99999988643221100 000 000 01345677788854211111 1
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
..++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d~v~~l 235 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQRTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCCEEEEE
Confidence 23456999999999999999999999999999999999999999999999864 57888887765 4677899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|+++.+|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 236 HLGNLVEVGDTEKMF 250 (267)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=313.21 Aligned_cols=214 Identities=23% Similarity=0.320 Sum_probs=167.5
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++++++.+. ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 467778776542 2469999999999999999999999999999999999721114589999999875
Q ss_pred Ch---hcccc-eeEEeccCCCCCCCCCHHHHHHHHHHcCC-----C---c---hHHHHHHHHHcccc-cccccccCCCCC
Q 045902 957 KQ---ETFAR-ISGYCEQNDIHSPNVTIYESLLYSAWLRL-----P---K---DMFVEEVMELVEMK-ALRNSLVGLPGV 1020 (1472)
Q Consensus 957 ~~---~~~~~-~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-----~---~---~~~~~~v~~~l~l~-~~~~~~~~~~~~ 1020 (1472)
.. ...++ .++|++|++.+++.+|+.|++.+...... . . ...++++++.+++. ...+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 43 12222 47899999999999999999876432110 1 0 12345666777765 23333321
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHh-hCeEEEEecC
Q 045902 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1099 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~-~D~v~~l~~g 1099 (1472)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++. +... +|++++|.+
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-
Confidence 2599999999999999999999999999999999999999999999998779999999999763 4444 799999975
Q ss_pred cEEEEEcCCC
Q 045902 1100 GHVIYAGPLG 1109 (1472)
Q Consensus 1100 g~v~~~g~~~ 1109 (1472)
|++++.|+.+
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 7999998763
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=355.22 Aligned_cols=211 Identities=28% Similarity=0.425 Sum_probs=175.5
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.|+|++|.++. ++++|+|+|++++|||.+||+||||||||||++.|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 45899999988642 45799999999999999999999999999999999998874 58999999988
Q ss_pred CC---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccc-------ccccccCCCCCCCCCH
Q 045902 956 KK---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKA-------LRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~-------~~~~~~~~~~~~~LSg 1025 (1472)
++ ...+++.++||+|++.++. -|++||+.++..- -.++.++++++..++.+ -.|+.+|.. ...|||
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~-G~~LSg 468 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGER-GVNLSG 468 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCC-CccCCH
Confidence 64 3567889999999999987 7999999886321 12334445554443332 246667643 457999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++||||++++|+||+||||||+||+.+...|++.++++. +|+|+|+++|+++ ....+|++++|++ |+++..
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~-G~i~e~ 544 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN-GRIVER 544 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999999887 5789999999985 4556999999986 789999
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 545 G~h 547 (567)
T COG1132 545 GTH 547 (567)
T ss_pred cCH
Confidence 985
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=313.89 Aligned_cols=206 Identities=24% Similarity=0.347 Sum_probs=166.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee-----CCCCCC-------CceEEEEcC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE-----LTEFVP-------QRTCAYISQ 254 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~Q 254 (1472)
.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 5899999999999999999999999999999999999887 8999999987 654322 246999999
Q ss_pred CCC--CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc-
Q 045902 255 HDL--HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI- 331 (1472)
Q Consensus 255 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~- 331 (1472)
++. +.+.+|+.||+.+......... . ++. ...++.+++.+|+.+
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~------------------~~~--------------~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARH-Y------------------GDI--------------RATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccCc-H------------------HHH--------------HHHHHHHHHHcCCChh
Confidence 973 5777899999976321110000 0 000 001345788889864
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHh
Q 045902 332 CADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411 (1472)
Q Consensus 332 ~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~ 411 (1472)
..++.++ .|||||||||+|||||+.+|++|+|||||+|||..+...+.+.|+++++..+.|+|++.|++ .++.+
T Consensus 144 ~~~~~~~-----~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~ 217 (258)
T PRK11701 144 RIDDLPT-----TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARL 217 (258)
T ss_pred HHhCCCc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHH
Confidence 4565554 59999999999999999999999999999999999999999999998765578888887765 46677
Q ss_pred ccCeEEEecCCeEEEecChhHHH
Q 045902 412 LFDDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 412 ~fD~iilL~~G~iv~~G~~~~~~ 434 (1472)
.+|++++|++|++++.|+.+++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 89999999999999999987763
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=314.21 Aligned_cols=209 Identities=27% Similarity=0.320 Sum_probs=165.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc--
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP-- 955 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~-- 955 (1472)
+.++|+++.+ ++..+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (253)
T TIGR02323 4 LQVSGLSKSY-------------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGA 68 (253)
T ss_pred EEEeeeEEEe-------------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccc
Confidence 5667776554 22468999999999999999999999999999999999876 358999999976
Q ss_pred ---CCh---hc----ccceeEEeccCCC--CCCCCCHHHHHHHHHH-cC-CC---chHHHHHHHHHcccc-cccccccCC
Q 045902 956 ---KKQ---ET----FARISGYCEQNDI--HSPNVTIYESLLYSAW-LR-LP---KDMFVEEVMELVEMK-ALRNSLVGL 1017 (1472)
Q Consensus 956 ---~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~e~l~~~~~-l~-~~---~~~~~~~v~~~l~l~-~~~~~~~~~ 1017 (1472)
... .. .++.++|++|++. ..+.+|+.|++.+... .. .. ....++++++.+++. ...++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--- 145 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL--- 145 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC---
Confidence 321 11 2346899999974 4466799999865321 11 11 123456777888875 244443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1018 ~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+.+|++++|
T Consensus 146 --~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l 222 (253)
T TIGR02323 146 --PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVM 222 (253)
T ss_pred --chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999976 466789999999
Q ss_pred ecCcEEEEEcCC
Q 045902 1097 KRGGHVIYAGPL 1108 (1472)
Q Consensus 1097 ~~gg~v~~~g~~ 1108 (1472)
++ |+++..|+.
T Consensus 223 ~~-G~i~~~~~~ 233 (253)
T TIGR02323 223 QQ-GRVVESGLT 233 (253)
T ss_pred EC-CEEEEECCH
Confidence 85 788888874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=312.91 Aligned_cols=210 Identities=20% Similarity=0.280 Sum_probs=164.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC---CCCCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK---SDKSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHDL 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~---~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~ 257 (1472)
+++|+|+|+.+++||+++|+||||||||||+++|+|. .++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 3599999999999999999999999999999999996 3331 12799999999876421 1356999999988
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
+++ .||+||+.+..+..+.... + ..+ ..++.+++.+||.+..++..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~----------~---------~~~--------------~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN----------A---------FIR--------------QRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH----------H---------HHH--------------HHHHHHHHHcCCCcchhhhh
Confidence 887 6999999876432211000 0 000 01345677888864321111
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
+.....|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ++.+++|+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVTHNMQ-QAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhCCEEE
Confidence 133456999999999999999999999999999999999999999999999853 678888877654 6778999999
Q ss_pred EecCCeEEEecChhHHH
Q 045902 418 LLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~ 434 (1472)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=312.01 Aligned_cols=197 Identities=26% Similarity=0.389 Sum_probs=158.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++. |
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 359999999999999999999999999999999999876 358999999987532 3345678999999887775 9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHccccccccccc-C-----CCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV-G-----LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~-~-----~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
++||+.+.... .....+++.++.+++.+..+... + ...+..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 v~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~L 170 (229)
T cd03254 93 IMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNI 170 (229)
T ss_pred HHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 99999765321 12233455555555554433321 0 1124589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+++.|+++. +|+|||++||+++. + +.+|++++|.+ |++++.|+.
T Consensus 171 D~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 171 DTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeC-CeEEEeCCH
Confidence 9999999999999986 58999999999763 4 56999999985 788887764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=313.81 Aligned_cols=207 Identities=24% Similarity=0.344 Sum_probs=164.0
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEEcCeeCCCC-----CCCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL--RVSGRVTYCGHELTEF-----VPQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 259 (1472)
++|+|+|+.+++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 58999999999999999999999999999999999986410 1389999999987421 1235799999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc----ccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD----ICADI 335 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 335 (1472)
+.+||+||+.+.....+... .. +.+ ..++.+++.+||. +..++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~---------~~----------~~~--------------~~~~~~l~~~~l~~~~~~~~~~ 144 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRN---------KK----------DLD--------------ELVEKSLRGANLWNEVKDRLDK 144 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCC---------HH----------HHH--------------HHHHHHHHHcCCchhhhhHhhC
Confidence 99999999987643221000 00 000 0124466777774 23344
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.+ ..|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++++ ++|+|++.|++ .++.+++|+
T Consensus 145 ~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d~ 216 (258)
T PRK14241 145 PG-----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSDQ 216 (258)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCE
Confidence 33 45999999999999999999999999999999999999999999999854 57888877765 467789999
Q ss_pred EEEec------CCeEEEecChhHHH
Q 045902 416 IILLS------EGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~------~G~iv~~G~~~~~~ 434 (1472)
+++|+ +|++++.|+.+++.
T Consensus 217 i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 217 TAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEecccCCCCceEEecCCHHHHH
Confidence 99997 79999999988764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=312.06 Aligned_cols=207 Identities=21% Similarity=0.343 Sum_probs=164.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCceeEEEEcCeeCCCCC-----CCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS--LRVSGRVTYCGHELTEFV-----PQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..++. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999987641 113899999999885421 13569999999988
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc----cccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD----ICAD 334 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 334 (1472)
++ +||+||+.|.....+.... .+ .. ..++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------~~----------~~--------------~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------KE----------LD--------------KIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------HH----------HH--------------HHHHHHHHHcCCchhhhhHhh
Confidence 87 8999999876432211000 00 00 0123456677764 2234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
.. .+.|||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 143 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d 214 (251)
T PRK14270 143 KS-----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSD 214 (251)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcC
Confidence 33 456999999999999999999999999999999999999999999999865 47888887765 47788999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 045902 415 DIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 415 ~iilL~~G~iv~~G~~~~~~ 434 (1472)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=314.04 Aligned_cols=197 Identities=29% Similarity=0.377 Sum_probs=156.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999876 458999999987532 233456999999988776 69
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHccccccccccc------CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV------GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~------~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
++|++.+....+ .....++.++..++..+.+.+. -...+..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 v~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gL 170 (238)
T cd03249 93 IAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSAL 170 (238)
T ss_pred HHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 999998743221 1122333444444433222110 01124579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+++.|+++. +|+|||+++|+++. + +.||++++|.+ |++++.|+.
T Consensus 171 D~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 171 DAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999997 78999999999763 4 58999999986 788888874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=311.43 Aligned_cols=204 Identities=20% Similarity=0.305 Sum_probs=160.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCCCceeEEEEcCeeCCCCC-----CCceEEEEcCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD-----KSLRVSGRVTYCGHELTEFV-----PQRTCAYISQH 255 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~-----~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~ 255 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+ ++ +|+|.++|+++.... .++.++|++|+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 358999999999999999999999999999999999754 34 899999999875421 13579999999
Q ss_pred CCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc----
Q 045902 256 DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI---- 331 (1472)
Q Consensus 256 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~---- 331 (1472)
+.+++. ||+||+.+.....+... ....+. .....++.+|+.+
T Consensus 111 ~~~~~~-tv~enl~~~~~~~~~~~-------------------~~~~~~--------------~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 111 PNPFPK-SIYNNITHALKYAGERR-------------------KSVLDE--------------IVEESLTKAALWDEVKD 156 (268)
T ss_pred CccCcc-cHHHHHHHHHHhcCCCc-------------------HHHHHH--------------HHHHHHHHcCCCcchHH
Confidence 988875 99999987532211000 000000 1223455566532
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHh
Q 045902 332 CADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411 (1472)
Q Consensus 332 ~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~ 411 (1472)
..++. ...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+
T Consensus 157 ~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~ 228 (268)
T PRK14248 157 RLHSS-----ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALR 228 (268)
T ss_pred HHhcC-----cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHH
Confidence 23333 445999999999999999999999999999999999999999999999864 57888887775 46778
Q ss_pred ccCeEEEecCCeEEEecChhHHH
Q 045902 412 LFDDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 412 ~fD~iilL~~G~iv~~G~~~~~~ 434 (1472)
++|++++|++|++++.|+.+++.
T Consensus 229 ~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 229 VSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999987763
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=299.08 Aligned_cols=170 Identities=38% Similarity=0.696 Sum_probs=149.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|... ++ +|+|.++|+++. ...++.++|++|++.+++.+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehH-HHhhhceEEecccCccccCCc
Confidence 469999999999999999999999999999999999753 44 899999999875 223467999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.++.. ++
T Consensus 96 v~~~l~~~~~--------------------------------------------------~~------------------ 107 (192)
T cd03232 96 VREALRFSAL--------------------------------------------------LR------------------ 107 (192)
T ss_pred HHHHHHHHHH--------------------------------------------------Hh------------------
Confidence 9999976310 00
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC-C
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE-G 422 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~-G 422 (1472)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++..++.+.+|++++|++ |
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 3999999999999999999999999999999999999999999999875 4789999988876557789999999999 9
Q ss_pred eEEEec
Q 045902 423 EIVYQG 428 (1472)
Q Consensus 423 ~iv~~G 428 (1472)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=310.95 Aligned_cols=212 Identities=20% Similarity=0.299 Sum_probs=164.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|+++|+++.+... ++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 369999999999999999999999999999999999875211128999999998865432 357999999988887 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++....+... +....+ ...+.+++.+||........ +...
T Consensus 94 tv~eni~~~~~~~~~~~------------------~~~~~~--------------~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIK------------------NKDEEE--------------ALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCccc------------------ChHHHH--------------HHHHHHHHHcCCChhhhHHh-cCCc
Confidence 99999987643221100 000000 01245677888843211111 2344
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|++++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEEEECC
Confidence 56999999999999999999999999999999999999999999999853 67888887765 4677899999999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999987763
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=363.09 Aligned_cols=210 Identities=27% Similarity=0.371 Sum_probs=175.2
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|++|.++. .++.+|+|+|++|+|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 36889999987642 234699999999999999999999999999999999999874 58999999998
Q ss_pred CC---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KK---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+. ...+++.+|||+|++.+++ .|++||+.+.. ....++.+.++++..++.+.. |+.+|.. ..+|||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~--~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSG 618 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD--PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSG 618 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC--CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCH
Confidence 64 3567889999999998885 59999997642 112345566777777765543 3445543 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|+||+||||||+||+.+++.+++.|++ .++|+|+++|+++ ....+|++++|++ |+++..
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~ 692 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQR 692 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEe
Confidence 999999999999999999999999999999999999999986 4899999999975 5677999999985 799999
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 693 G~~ 695 (710)
T TIGR03796 693 GTH 695 (710)
T ss_pred cCH
Confidence 985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=313.10 Aligned_cols=210 Identities=18% Similarity=0.300 Sum_probs=163.0
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEEcCeeCCCC-----CCCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEF-----VPQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 259 (1472)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++ ++...+|+|.++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 58999999999999999999999999999999999986 3212389999999987531 1135799999998888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+. ||+||+.|..+..+...+ . +.+ ..++.+++.+|+.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------~----------~~~--------------~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------K----------KLQ--------------EIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------H----------HHH--------------HHHHHHHHHcCCchhhhhhh-h
Confidence 75 999999875432211000 0 000 01234566677643111111 1
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
...+.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+ ++|+|++.|++. ++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQ-QAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999853 578888877654 777899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988763
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=310.96 Aligned_cols=208 Identities=22% Similarity=0.289 Sum_probs=165.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEEcCeeCCCC-----CCCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEF-----VPQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++ ++...+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999975 3111379999999987532 124579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc----ccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI----CAD 334 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 334 (1472)
++.+||+||+.+..+..+... . .+.+ ..++.+++.+|+.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~----------~~~~--------------~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------R----------SEAD--------------EIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------H----------HHHH--------------HHHHHHHHHcCCchhhhHHhh
Confidence 999999999987533211000 0 0000 01345677777753 223
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
+ ....|||||||||+||++++.+|++++|||||+|||..++.++.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 144 ~-----~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d 215 (252)
T PRK14256 144 S-----NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSD 215 (252)
T ss_pred C-----CcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCC
Confidence 3 3445999999999999999999999999999999999999999999999964 47888877765 47778999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 045902 415 DIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 415 ~iilL~~G~iv~~G~~~~~~ 434 (1472)
++++|++|+++..|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999987763
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=352.26 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=177.4
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 36889999887631 12469999999999999999999999999999999999877 458999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc------ccccCCCCCCCCCHH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR------NSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~------~~~~~~~~~~~LSgG 1026 (1472)
+.+ ..+++.++||+|++.+++ .|++||+.+... ...++.++++++..++.+.. |+.+|.. ...||||
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgG 479 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGG 479 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCC--ccCHHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHH
Confidence 643 456788999999998876 599999987531 12345677788888877653 3444433 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|++|+||||||+||+.+++.+++.|+++. +++|+|+++|+++ ....+|++++|++ |+++..|
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~-G~i~~~g 555 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN-GQIIEQG 555 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-CeEEEeC
Confidence 9999999999999999999999999999999999999999985 4899999999986 4567999999985 7899988
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 556 ~~ 557 (574)
T PRK11160 556 TH 557 (574)
T ss_pred CH
Confidence 74
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=311.37 Aligned_cols=201 Identities=19% Similarity=0.282 Sum_probs=162.4
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
..+.+|+|+|++|+|||++||+||||||||||+++|+|..+ +.+|+|.++|. ++++.|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcH
Confidence 44679999999999999999999999999999999999876 45899999984 3567777777788999
Q ss_pred HHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 981 YESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
.||+.+..... .+.+ ..++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 103 IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 99998754332 2222 2234567777776655543 3479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHH
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFE 1120 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~ 1120 (1472)
++..+++.|+++.+.|+|||+++|++. ++.+.+|++++|.+ |+++..|+.++..+...+||.
T Consensus 178 ~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 178 FAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHHHHHHHhHHHHH
Confidence 999999999999877999999999975 46678999999985 788888876433233334443
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=282.87 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=169.2
Q ss_pred ccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC-------------h---hccc
Q 045902 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK-------------Q---ETFA 962 (1472)
Q Consensus 899 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~-------------~---~~~~ 962 (1472)
.++...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+ +..|.|.+||..+. . ...+
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 3456789999999999999999999999999999999997765 45899999996431 1 1223
Q ss_pred ceeEEeccCCCCCCCCCHHHHHHHHH--HcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhC
Q 045902 963 RISGYCEQNDIHSPNVTIYESLLYSA--WLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVAN 1040 (1472)
Q Consensus 963 ~~~gyv~Q~~~~~~~lTv~e~l~~~~--~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~ 1040 (1472)
...|+|+|+..++..+||.||+.-.- -+..++.+.++.+...|...++.++....| ..|||||+||++|||||+.+
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP--~~LSGGQQQR~aIARaLame 170 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP--AHLSGGQQQRVAIARALAME 170 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc--cccCchHHHHHHHHHHHhcC
Confidence 45799999999999999999986432 234555566666655555555555554444 47999999999999999999
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1041 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1041 p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|+++++|||||+|||+-.-++++.+++++++|+|.+++||.+.. .-+...+++.|.+ |.+...||+.
T Consensus 171 P~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 171 PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred CceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 99999999999999999999999999999999999999998763 5566789999986 7999999873
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=345.60 Aligned_cols=200 Identities=25% Similarity=0.352 Sum_probs=169.0
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCCCCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQNDIHSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~~~~~~ 977 (1472)
++.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 3579999999999999999999999999999999999876 358999999987532 2234578999999988899
Q ss_pred CCHHHHHHHHHH-cCC---Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCC
Q 045902 978 VTIYESLLYSAW-LRL---PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1050 (1472)
Q Consensus 978 lTv~e~l~~~~~-l~~---~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPT 1050 (1472)
+||.|++.+... .+. +.+ ..++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987532 111 111 34667788888876655543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 045902 1051 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGR 1110 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~ 1110 (1472)
+|||+.++..+.+.|+++++.|+|||++||+++ ++.+.||++++|++ |+++..|+...
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 999999999999999999888999999999976 46778999999985 78999888654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=311.95 Aligned_cols=213 Identities=23% Similarity=0.328 Sum_probs=167.4
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--C-CeeEEEEEEcCc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GYIEGSISISGY 954 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~G~ 954 (1472)
+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|.
T Consensus 4 l~~~~v~~~~-------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (250)
T PRK14266 4 IEVENLNTYF-------------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV 70 (250)
T ss_pred EEEEeEEEEe-------------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCE
Confidence 5567776543 23469999999999999999999999999999999999743 1 125899999998
Q ss_pred cCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHcccccccccccCCCCCCCCC
Q 045902 955 PKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLS 1024 (1472)
Q Consensus 955 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LS 1024 (1472)
++.. ...++.++|++|++.+++. |+.||+.+...... ..+ ..+.++++.+++......... .....||
T Consensus 71 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS 148 (250)
T PRK14266 71 DIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD-KSALGLS 148 (250)
T ss_pred EcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcccCC
Confidence 7532 2345679999999988875 99999987643221 111 234556677666432111111 1245799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|.+ |++++
T Consensus 149 ~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~ 225 (250)
T PRK14266 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIE 225 (250)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999964 899999999986 57788999999975 78998
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|+.
T Consensus 226 ~g~~ 229 (250)
T PRK14266 226 SGLT 229 (250)
T ss_pred eCCH
Confidence 8875
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=301.81 Aligned_cols=195 Identities=27% Similarity=0.444 Sum_probs=169.7
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----C--CceEEEEcCCCCCCCCCC
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----P--QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~--~~~~~yv~Q~d~~~~~lT 263 (1472)
++++..+.--+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. | +|.+|||+|+-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 677777765899999999999999999999999998 999999998764421 2 488999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+-||.|+.... . ....|.+.+.||++|..+.+...
T Consensus 93 VrgNL~YG~~~~------------~----------------------------~~~fd~iv~lLGI~hLL~R~P~~---- 128 (352)
T COG4148 93 VRGNLRYGMWKS------------M----------------------------RAQFDQLVALLGIEHLLDRYPGT---- 128 (352)
T ss_pred Eecchhhhhccc------------c----------------------------hHhHHHHHHHhCcHHHHhhCCCc----
Confidence 999999874311 0 00136788999999999876654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+|||||++.|++|+||||.+.||-....+++-+|.+++++.+.-++-..| -..|+.+++|+|++|++|+
T Consensus 129 -LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSH-S~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH-SLDEVLRLADRVVVLENGK 206 (352)
T ss_pred -cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEec-CHHHHHhhhheEEEecCCe
Confidence 99999999999999999999999999999999999999999999999887777776655 4569999999999999999
Q ss_pred EEEecChhHHH
Q 045902 424 IVYQGPREYVL 434 (1472)
Q Consensus 424 iv~~G~~~~~~ 434 (1472)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999999875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=310.53 Aligned_cols=210 Identities=22% Similarity=0.344 Sum_probs=162.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEEcCeeCCCC-----CCCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEF-----VPQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 259 (1472)
.+|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 58999999999999999999999999999999999853 4222379999999987432 1245799999998888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
+ +||+||+.+.....+.... ...+ ..++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-------------------~~~~--------------~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-------------------QVLD--------------EAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-------------------HHHH--------------HHHHHHHHHcCCchhHHHHH-h
Confidence 7 8999999876432211000 0000 01234566666642111111 2
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
.....|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++.|++ .++.+.+|++++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCCEEEEE
Confidence 33456999999999999999999999999999999999999999999999864 47888877765 4778899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=311.78 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=167.1
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC----eeEEEEEEcC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG----YIEGSISISG 953 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~----~~~G~i~i~G 953 (1472)
+.++++++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|...+. .+.|++.++|
T Consensus 11 i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 11 FNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFG 77 (257)
T ss_pred eeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECC
Confidence 6667776553 3457999999999999999999999999999999999986532 1235566666
Q ss_pred ccCC---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--Cch---HHHHHHHHHccccccc-ccccCCCCCCCCC
Q 045902 954 YPKK---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKD---MFVEEVMELVEMKALR-NSLVGLPGVDGLS 1024 (1472)
Q Consensus 954 ~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~---~~~~~v~~~l~l~~~~-~~~~~~~~~~~LS 1024 (1472)
.+.. ....++.++|++|++.+++.+|++||+.+...... +.+ ..++++++.+++.... +.... .+..||
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~LS 155 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNS--PASQLS 155 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcC--CcccCC
Confidence 6542 22345678999999999999999999988654321 111 2356677777774311 11112 235799
Q ss_pred HHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1025 gGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|.+ |+++.
T Consensus 156 ~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~ 232 (257)
T PRK14246 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVE 232 (257)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999965 699999999976 46688999999985 78888
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|+.
T Consensus 233 ~g~~ 236 (257)
T PRK14246 233 WGSS 236 (257)
T ss_pred ECCH
Confidence 8875
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=356.90 Aligned_cols=208 Identities=27% Similarity=0.396 Sum_probs=170.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+.++||+.++|+|+||||||||+|+|+|.++|+ +|+|.+||++++++.. ++.++||+|++.+++ .
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ 545 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-R 545 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehh-h
Confidence 35899999999999999999999999999999999999998 8999999999987754 467999999988875 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.++... . +++++.+..+.+. .+..++ .|++..||.+|+ .+
T Consensus 546 ti~eNi~~~~~~----~------------------~~~~i~~a~~~~~---------l~~~i~--~lp~gl~t~i~~-~g 591 (694)
T TIGR01846 546 SIRDNIALCNPG----A------------------PFEHVIHAAKLAG---------AHDFIS--ELPQGYNTEVGE-KG 591 (694)
T ss_pred hHHHHHhcCCCC----C------------------CHHHHHHHHHHcC---------hHHHHH--hCcCccCcEecC-CC
Confidence 999999774210 0 0111122111111 122222 345567899985 57
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.+||||||||++||||++.+|++++|||||++||+.++..+.+.|+++. .++|+|++.|++. ..+.+|+|++|++|
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ii~l~~G 667 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDRIIVLEKG 667 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCEEEEEeCC
Confidence 7899999999999999999999999999999999999999999999874 4789999888774 55679999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 668 ~i~~~g~~~~l~~ 680 (694)
T TIGR01846 668 QIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=305.38 Aligned_cols=192 Identities=26% Similarity=0.410 Sum_probs=160.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-------CCceEEEEcCCCCCCCCCC
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-------PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 263 (1472)
|+|+.+++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999887 899999999875321 1357999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.+...... . ... ....+.+++.+||++..++.++
T Consensus 92 ~~~~l~~~~~~~~-----~------~~~-------------------------~~~~~~~l~~~~l~~~~~~~~~----- 130 (214)
T cd03297 92 VRENLAFGLKRKR-----N------RED-------------------------RISVDELLDLLGLDHLLNRYPA----- 130 (214)
T ss_pred HHHHHHHHHhhCC-----H------HHH-------------------------HHHHHHHHHHcCCHhHhhcCcc-----
Confidence 9999987532100 0 000 0013457888899876666554
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCE
Confidence 49999999999999999999999999999999999999999999999775578888887765 46778999999999999
Q ss_pred EEEec
Q 045902 424 IVYQG 428 (1472)
Q Consensus 424 iv~~G 428 (1472)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=344.30 Aligned_cols=208 Identities=28% Similarity=0.382 Sum_probs=172.3
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~ 69 (501)
T PRK11288 5 LSFDGIGKTF-------------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMR 69 (501)
T ss_pred EEEeeeEEEE-------------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 5677776654 23469999999999999999999999999999999999876 35899999998753
Q ss_pred h----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC----CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 958 Q----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR----LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~----~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
. ..+++.+||++|++.+++.+||.||+.+..... .+. ...++++++.+++.+..+.. +..||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHH
Confidence 2 223567899999998999999999998753211 111 13466778888886555544 3479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~ 222 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeec
Confidence 999999999999999999999999999999999999999999878999999999976 46778999999986 6777666
Q ss_pred C
Q 045902 1107 P 1107 (1472)
Q Consensus 1107 ~ 1107 (1472)
+
T Consensus 223 ~ 223 (501)
T PRK11288 223 D 223 (501)
T ss_pred C
Confidence 4
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=361.70 Aligned_cols=210 Identities=24% Similarity=0.363 Sum_probs=175.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ +++.+|+|+|++|+|||.+||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 588999988763 12469999999999999999999999999999999999887 4589999999886
Q ss_pred C---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCHH
Q 045902 957 K---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSgG 1026 (1472)
. ...+++.+|||+|++.+++. |++||+.+.... ...++.+.++++..++.+.. |+.++.. ..+||||
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~-G~~LSgG 615 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE-GSSISGG 615 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCC-CCCCCHH
Confidence 4 35677889999999998865 999999875321 12234566677766665432 4555543 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|++++|++ |+++..|
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G 690 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQG 690 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999985 4799999999975 5688999999985 7899999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 691 ~~ 692 (708)
T TIGR01193 691 SH 692 (708)
T ss_pred CH
Confidence 84
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=313.44 Aligned_cols=205 Identities=21% Similarity=0.315 Sum_probs=160.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEEcCeeCCCC--C---CCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL--RVSGRVTYCGHELTEF--V---PQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... . .++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 358999999999999999999999999999999999976310 1289999999987421 1 13569999999988
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc----cccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD----ICAD 334 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 334 (1472)
++ .||+||+.+.+...+... +. .+ .++.+++.+++. +..|
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~------~~--~~---------------------------~~~~~l~~~~l~~~l~~~~~ 149 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG------DM--DE---------------------------LVERSLRKAAVWDECKDKLN 149 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH------HH--HH---------------------------HHHHHHHHhCCcchhhhhhC
Confidence 87 599999988654321100 00 00 012345555553 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
+. ...|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 150 ~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d 221 (269)
T PRK14259 150 ES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSD 221 (269)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcC
Confidence 33 455999999999999999999999999999999999999999999999853 57888877765 47889999
Q ss_pred eEEEecC-----------CeEEEecChhHHH
Q 045902 415 DIILLSE-----------GEIVYQGPREYVL 434 (1472)
Q Consensus 415 ~iilL~~-----------G~iv~~G~~~~~~ 434 (1472)
++++|++ |++++.|+.+++.
T Consensus 222 ~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 222 MTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999996 6789999998874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=327.11 Aligned_cols=211 Identities=24% Similarity=0.361 Sum_probs=176.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.++++|+++.++. +..++|+|+|+++++||.+||+|+||||||||++.|+|... +.+|+|.++|.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 6788898887742 23579999999999999999999999999999999999877 4589999999886
Q ss_pred C---hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccc-------cCCCCCCCCCHH
Q 045902 957 K---QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSL-------VGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~---~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~-------~~~~~~~~LSgG 1026 (1472)
. +...++.+++++|...+|. -|+++||..+.. ...++.+.++++.+||.++.... +|. +.+.||||
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~~--~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGG 478 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLANP--DASDEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGG 478 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcCC--CCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCch
Confidence 3 3446778899999887764 599999986531 12345667788888887765443 333 35689999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||+|++|.++++|||||.|||+.++++|++.|.+.++ |+|+|++||+.. -.+.||+|++|++ |+++..|
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~-Gkiie~G 554 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN-GKIIEEG 554 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-CeeeecC
Confidence 99999999999999999999999999999999999999998765 899999999964 6789999999985 7999988
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
..
T Consensus 555 ~~ 556 (573)
T COG4987 555 TH 556 (573)
T ss_pred CH
Confidence 75
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=299.86 Aligned_cols=201 Identities=20% Similarity=0.322 Sum_probs=152.0
Q ss_pred ceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 875 PLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
|..+..+++++-++ +.++++++++|-|.--..+||+||||.||||||++|.|.+.+ ..|+..-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc--
Confidence 44566777776542 356799999999999999999999999999999999998874 36665432
Q ss_pred cCChhcccceeEEeccCC--CCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 955 PKKQETFARISGYCEQND--IHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 955 ~~~~~~~~~~~gyv~Q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
.+-.+|+..|.. .+-..-|..|.|.-. ..+|. +.....+-.+||...++++- +..||||||-||+
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlpy-q~ARK~LG~fGL~sHAHTik----ikdLSGGQKaRVa 714 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRK--FNLPY-QEARKQLGTFGLASHAHTIK----IKDLSGGQKARVA 714 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHh--cCCCh-HHHHHHhhhhhhhhccceEe----eeecCCcchHHHH
Confidence 233578888764 344556777776422 12332 23445566777777777653 4579999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+|..-+..|+||||||||++||..+...+-+.|++. ...||+++||-.. +.+.-+.+.|+.+.|.-.-.|..
T Consensus 715 laeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdGdF 786 (807)
T KOG0066|consen 715 LAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDGDF 786 (807)
T ss_pred HHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccccH
Confidence 999999999999999999999999999999999887 4689999999664 55666778888776655555654
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=311.87 Aligned_cols=195 Identities=28% Similarity=0.381 Sum_probs=153.6
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 69999999999999999999999999999999999876 458999999987532 234567899999988776 699
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHccccccccc-------ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCC
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNS-------LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~-------~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgL 1053 (1472)
+||+.+..... .....++.++..++....+. ..+ ..+..||+|||||++||++|+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~L 169 (234)
T cd03251 93 AENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIG-ERGVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169 (234)
T ss_pred HHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 99997753211 11222222232222221111 111 124579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+.++..+.+.|+++.+ |+|||++||+++. + +.||++++|.+ |+++..|+.
T Consensus 170 D~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 170 DTESERLVQAALERLMK-NRTTFVIAHRLST-I-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-H-hhCCEEEEecC-CeEeeeCCH
Confidence 99999999999999964 8999999999863 4 45999999986 688888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=311.21 Aligned_cols=197 Identities=24% Similarity=0.354 Sum_probs=163.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 5 l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~--- 66 (251)
T PRK09544 5 VSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK--- 66 (251)
T ss_pred EEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc---
Confidence 56777766542 3469999999999999999999999999999999999876 35899999872
Q ss_pred hhcccceeEEeccCCCCCCC--CCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHH
Q 045902 958 QETFARISGYCEQNDIHSPN--VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAV 1035 (1472)
Q Consensus 958 ~~~~~~~~gyv~Q~~~~~~~--lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~ 1035 (1472)
+.++|++|++.+++. .|+.+++.+.. ...+..+.++++.+++.+..+... ..||||||||++||+
T Consensus 67 -----~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~lar 133 (251)
T PRK09544 67 -----LRIGYVPQKLYLDTTLPLTVNRFLRLRP---GTKKEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLAR 133 (251)
T ss_pred -----cCEEEeccccccccccChhHHHHHhccc---cccHHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHH
Confidence 358999999877665 47888765421 112345678888888877666543 479999999999999
Q ss_pred HHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1036 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1036 aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|. + +++..|+.
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g~~ 204 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSGTP 204 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeCCH
Confidence 999999999999999999999999999999999765 899999999976 4678899999995 4 57788875
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=313.65 Aligned_cols=214 Identities=24% Similarity=0.310 Sum_probs=169.2
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCC---eeEEEEEEc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---YIEGSISIS 952 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~ 952 (1472)
..+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3477888876652 246999999999999999999999999999999999986531 258999999
Q ss_pred CccCC-------hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCc----hHHHHHHHHHccccc-ccccccCCCC
Q 045902 953 GYPKK-------QETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPK----DMFVEEVMELVEMKA-LRNSLVGLPG 1019 (1472)
Q Consensus 953 G~~~~-------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~----~~~~~~v~~~l~l~~-~~~~~~~~~~ 1019 (1472)
|.+.. ...+++.++|++|++.+++. |++||+.+..... .+. ++.++++++.+++.. +.+.. . ..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~-~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL-G-DL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH-h-CC
Confidence 97642 12345678999999988876 9999998764322 111 134456666666531 11111 1 11
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1020 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|++
T Consensus 159 ~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~- 235 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM- 235 (265)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999975 699999999976 46788999999985
Q ss_pred cEEEEEcCC
Q 045902 1100 GHVIYAGPL 1108 (1472)
Q Consensus 1100 g~v~~~g~~ 1108 (1472)
|+++..|+.
T Consensus 236 G~i~~~g~~ 244 (265)
T PRK14252 236 GELIEFGAT 244 (265)
T ss_pred CEEEEeCCH
Confidence 788888875
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=299.38 Aligned_cols=159 Identities=25% Similarity=0.466 Sum_probs=141.8
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCC---CCCCC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQND---IHSPN 977 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~---~~~~~ 977 (1472)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999876 358999999987643 23456799999984 57788
Q ss_pred CCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHH
Q 045902 978 VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
+|++||+.+... ||+|||||++||+||+.+|++|+|||||+|||+.+
T Consensus 93 ~t~~e~l~~~~~---------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 139 (182)
T cd03215 93 LSVAENIALSSL---------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139 (182)
T ss_pred CcHHHHHHHHhh---------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHH
Confidence 999999976421 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1058 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1058 ~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 140 ~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G 180 (182)
T cd03215 140 KAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEG 180 (182)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCC
Confidence 99999999999877899999999975 577789999999863
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=313.36 Aligned_cols=212 Identities=27% Similarity=0.341 Sum_probs=169.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----CCceeEEEEcCeeCCCCCC---CceEEEEcCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-----LRVSGRVTYCGHELTEFVP---QRTCAYISQHDL 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~-----~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 257 (1472)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++++ ...+|+|.++|+++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 36999999999999999999999999999999999998764 1137999999998765432 345899999987
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
.++.+||+||+.+....... .. +... .+. ...++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~-------------~~~~-~~~--------------~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RA-------------GALT-HRD--------------GEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--cc-------------ccCC-HHH--------------HHHHHHHHHHcCcHhhhcCCc
Confidence 67779999999875321000 00 0000 000 001345788899987666655
Q ss_pred cCccCCCCChHHHHHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLV---------GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE 408 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~---------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 408 (1472)
+ .|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. +
T Consensus 144 ~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~ 217 (272)
T PRK13547 144 T-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-L 217 (272)
T ss_pred c-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-H
Confidence 4 49999999999999999 5999999999999999999999999999987655788888887754 6
Q ss_pred HHhccCeEEEecCCeEEEecChhHH
Q 045902 409 TYDLFDDIILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 409 ~~~~fD~iilL~~G~iv~~G~~~~~ 433 (1472)
+.+++|++++|++|++++.|+.+++
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHH
Confidence 7789999999999999999998776
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=310.30 Aligned_cols=200 Identities=27% Similarity=0.330 Sum_probs=156.9
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hc-ccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ET-FARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~-~~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+|++|++|+++||+||||||||||+++|+|..+..+.+|+|.++|.+... .. .++.++|++|++.+++.+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 46999999999999999999999999999999999984211458999999987532 11 234689999999888888
Q ss_pred CHHHHHHHHH-Hc---CC----Cc---hHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccc
Q 045902 979 TIYESLLYSA-WL---RL----PK---DMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1046 (1472)
Q Consensus 979 Tv~e~l~~~~-~l---~~----~~---~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~L 1046 (1472)
|+.+++.+.. .+ +. .. .+.++++++.+++. +..+..+ ...||||||||++|||||+.+|++|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8777654321 11 00 00 13445667777763 3333332 126999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHh-hCeEEEEecCcEEEEEcCC
Q 045902 1047 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1047 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~-~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||||+|||+.++..+.+.|+++++.|+|||++||+++. +... +|++++|++ |++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 230 (248)
T PRK09580 170 DESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDF 230 (248)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEEC-CeEEEeCCH
Confidence 99999999999999999999998778999999999763 4444 799999975 788898875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=310.40 Aligned_cols=212 Identities=19% Similarity=0.303 Sum_probs=165.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +....+|+|+++|+++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999975 21113899999999875421 24579999999888
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++. ||+||+.+.....+..... . +.+ ..++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------~----------~~~--------------~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------K----------KLD--------------EIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------H----------HHH--------------HHHHHHHHHcCCCchhhhHh-
Confidence 875 9999998753221110000 0 000 01345678888865222222
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+..++.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.+ ++|+|++.|++. ++.+++|++++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVTHSMK-QAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhcCEEEE
Confidence 123456999999999999999999999999999999999999999999999853 688888887754 67789999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|++++.|+.+++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999987763
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=345.77 Aligned_cols=208 Identities=27% Similarity=0.365 Sum_probs=169.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
..+|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 403 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-D 403 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-c
Confidence 35899999999999999999999999999999999999998 9999999999877543 467999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++||+.++... . .++++....+.+ +. +. ....|++..||.+|+ .+
T Consensus 404 ti~~Ni~~~~~~---~-------------------~~~~~~~~~~~~---~l------~~--~i~~lp~gl~t~~~~-~g 449 (569)
T PRK10789 404 TVANNIALGRPD---A-------------------TQQEIEHVARLA---SV------HD--DILRLPQGYDTEVGE-RG 449 (569)
T ss_pred cHHHHHhcCCCC---C-------------------CHHHHHHHHHHc---CC------HH--HHHhCcCcccceecC-CC
Confidence 999999875210 0 011111111111 11 11 123456677999985 56
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..||||||||++||||++.+|++++|||||++||+.++..+.+.|+++. .++|+|++.|++ +..+.+|+|++|++|
T Consensus 450 ~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~i~~l~~G 525 (569)
T PRK10789 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASEILVMQHG 525 (569)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCEEEEEeCC
Confidence 7899999999999999999999999999999999999999999999874 478999988887 455779999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++.+|+++++.+
T Consensus 526 ~i~~~g~~~~l~~ 538 (569)
T PRK10789 526 HIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEecCHHHHHH
Confidence 9999999988754
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=312.83 Aligned_cols=207 Identities=25% Similarity=0.326 Sum_probs=169.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCC--C
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHD--L 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 257 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|..+++ +|+|.++|+++....+ ++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 56999999999999999999999999999999999999887 9999999998765432 35799999997 4
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-cccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIM 336 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 336 (1472)
+.+..|+.|++.+...... .....+ .....+.+++.+|+. ...++.
T Consensus 102 ~~~~~t~~~~l~~~~~~~~---------~~~~~~------------------------~~~~~~~~l~~~gl~~~~~~~~ 148 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLL---------SLDKAE------------------------RLARASEMLRAVDLDDSVLDKR 148 (268)
T ss_pred cCCCCCHHHHHHHHHHhhc---------cCCHHH------------------------HHHHHHHHHHHcCCChhHhhCC
Confidence 6678999999876421100 000000 001235678888986 456655
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
++ .||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.+++|++
T Consensus 149 ~~-----~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i 222 (268)
T PRK10419 149 PP-----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRV 222 (268)
T ss_pred Cc-----cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEE
Confidence 54 59999999999999999999999999999999999999999999998775578888887765 4677899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+.+++.
T Consensus 223 ~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEECCEEeeeCChhhcc
Confidence 999999999999987764
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=349.46 Aligned_cols=208 Identities=23% Similarity=0.385 Sum_probs=170.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+.++|||.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 420 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-D 420 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCccccc-c
Confidence 36899999999999999999999999999999999999998 8999999999887653 467999999998774 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
|++|||.++... . .+++++.+..+.+. .+..++ .|++..||.+|+ .+
T Consensus 421 Ti~~Ni~~~~~~-~--------------------~~~~~i~~~l~~~~---------l~~~i~--~lp~gldt~i~~-~g 467 (571)
T TIGR02203 421 TIANNIAYGRTE-Q--------------------ADRAEIERALAAAY---------AQDFVD--KLPLGLDTPIGE-NG 467 (571)
T ss_pred cHHHHHhcCCCC-C--------------------CCHHHHHHHHHHcC---------hHHHHH--hCcCcccceecC-CC
Confidence 999999875210 0 01112222222211 122222 355667999985 47
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
+.||||||||++||||++.+|++++||||||+||..++..|.+.|++.. .++|+|+..|++ +..+.+|+|++|++|
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDG 543 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCC
Confidence 7899999999999999999999999999999999999999999999875 468999888877 567889999999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
+++..|+++++.
T Consensus 544 ~i~~~g~~~~l~ 555 (571)
T TIGR02203 544 RIVERGTHNELL 555 (571)
T ss_pred EEEeeCCHHHHH
Confidence 999999999875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=318.79 Aligned_cols=214 Identities=26% Similarity=0.344 Sum_probs=167.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC---CeeEEEEEEcC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GYIEGSISISG 953 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~G 953 (1472)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 577888876542 24699999999999999999999999999999999998642 13589999999
Q ss_pred ccCCh-----hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-------------CCc----hHHHHHHHHHccccccc
Q 045902 954 YPKKQ-----ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-------------LPK----DMFVEEVMELVEMKALR 1011 (1472)
Q Consensus 954 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-------------~~~----~~~~~~v~~~l~l~~~~ 1011 (1472)
.++.. ...++.++|++|++.+++ .||+||+.+....+ ... +..++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988777 59999998764321 111 12355666767663211
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhC
Q 045902 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1091 (1472)
Q Consensus 1012 ~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D 1091 (1472)
+.... ..+..||||||||++||+||+.+|+||+|||||+|||+.++..+++.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12457999999999999999999999999999999999999999999999976 489999999976 4678899
Q ss_pred eEE-EEecCcEEEEEcCC
Q 045902 1092 ELF-LMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1092 ~v~-~l~~gg~v~~~g~~ 1108 (1472)
+++ +|. +|+++..|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 566 5799998875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=309.45 Aligned_cols=211 Identities=22% Similarity=0.378 Sum_probs=163.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CCCceeEEEEcCeeCCCC-----CCCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK--SLRVSGRVTYCGHELTEF-----VPQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 3589999999999999999999999999999999999863 111389999999987532 123579999999988
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++ +||+||+.+.....+.... ...+ ..++..++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~-------------------~~~~--------------~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK-------------------HKLD--------------RIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-------------------HHHH--------------HHHHHHHHHcCCCchhHHH-H
Confidence 87 8999999876432111000 0000 0123456666664321111 1
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+.....||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++++ ++|++++.|++. ++.+++|++++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCCEEEE
Confidence 234456999999999999999999999999999999999999999999999864 578888877654 67789999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988764
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=348.09 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=170.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 263 (1472)
++|+|+|+.++||+.++|+|+||||||||+|+|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+ .|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCccccc-cc
Confidence 5899999999999999999999999999999999999997 9999999999987653 468999999998885 69
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
++|||.++... . +++++....+.+.+ +..++ .+++..||.+|+ .+.
T Consensus 425 i~~Ni~~~~~~--~--------------------~d~~i~~al~~~~l---------~~~i~--~lp~gldt~i~~-~g~ 470 (588)
T PRK13657 425 IEDNIRVGRPD--A--------------------TDEEMRAAAERAQA---------HDFIE--RKPDGYDTVVGE-RGR 470 (588)
T ss_pred HHHHHhcCCCC--C--------------------CHHHHHHHHHHhCH---------HHHHH--hCcccccchhcC-CCC
Confidence 99999875210 0 11122222222211 12222 245667899885 577
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
.||||||||++|||||+.+|++++||||||+||+.++..+.+.|+++. .++|+|++.|++ +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999874 368999988887 4668899999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999988853
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=300.51 Aligned_cols=172 Identities=25% Similarity=0.333 Sum_probs=146.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcc-cceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETF-ARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~-~~~~gyv~Q~~~~~~~l 978 (1472)
+.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+... ... ++.++|++|++.+++..
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence 46999999999999999999999999999999999984111458999999987643 122 34589999999888888
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHH
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~ 1058 (1472)
|+++++. .. ...||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 93 ~~~~~l~---------------------------~~-----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 140 (200)
T cd03217 93 KNADFLR---------------------------YV-----NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDAL 140 (200)
T ss_pred cHHHHHh---------------------------hc-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 8887760 00 136999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEEecCccHHHHH-hhCeEEEEecCcEEEEEcCC
Q 045902 1059 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1059 ~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~-~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
..+.+.|++++++|+|||+++|+++ .+.+ .+|++++|++ |+++..|+.
T Consensus 141 ~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~~~ 189 (200)
T cd03217 141 RLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSGDK 189 (200)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEccH
Confidence 9999999999877899999999976 3444 6999999985 788888853
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=358.51 Aligned_cols=212 Identities=27% Similarity=0.430 Sum_probs=176.8
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|+++.++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 35889999988731 234699999999999999999999999999999999999874 58999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.+ ..+++.++||+|++.+++ .|++||+.+... ...++.+.++++..++.+.. |+.+|.. ..+|||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSg 604 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSG 604 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCcccccceecCC-CCCCCH
Confidence 643 567889999999998886 499999986421 12345566667776665432 4445543 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +++|+|+++|+++ ..+.+|++++|++ |+++..
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~ 680 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVAD 680 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEee
Confidence 99999999999999999999999999999999999999999986 4799999999975 5688999999985 799999
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 681 G~~ 683 (694)
T TIGR03375 681 GPK 683 (694)
T ss_pred CCH
Confidence 974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=308.21 Aligned_cols=206 Identities=23% Similarity=0.337 Sum_probs=160.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 46899999999999999999999999999999999999887 8999999988754322 356999999987775 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh--CCcccccccccCc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL--GLDICADIMVGNE 340 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l--gL~~~~dt~vg~~ 340 (1472)
||+||+.+...... . + ++. ...+ . ......++.+ |++...+..
T Consensus 92 tv~e~l~~~~~~~~---~-~---~~~---------------~~~~---~------~~~~~~~~~l~~~~~~~~~~~---- 136 (238)
T cd03249 92 TIAENIRYGKPDAT---D-E---EVE---------------EAAK---K------ANIHDFIMSLPDGYDTLVGER---- 136 (238)
T ss_pred hHHHHhhccCCCCC---H-H---HHH---------------HHHH---H------cChHHHHHhhccccceeeccC----
Confidence 99999987532110 0 0 000 0000 0 0012223333 444444433
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .++|+|++.|++. ++ +.+|++++|+
T Consensus 137 -~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~-~~~d~v~~l~ 211 (238)
T cd03249 137 -GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TI-RNADLIAVLQ 211 (238)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HH-hhCCEEEEEE
Confidence 45699999999999999999999999999999999999999999999985 5788888887764 45 4899999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999877654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=308.30 Aligned_cols=208 Identities=24% Similarity=0.334 Sum_probs=162.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEEcCeeCCCC-----CCCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL--RVSGRVTYCGHELTEF-----VPQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.++++. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 369999999999999999999999999999999999987531 1379999999987532 113569999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc----cccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD----ICAD 334 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 334 (1472)
++.+|+.||+.+.....+...+ ++..+ ..+.+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~-------------------~~~~~--------------~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR-------------------DHLME--------------VAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH-------------------HHHHH--------------HHHHHHHHcCcchhhhhhhc
Confidence 9999999999875432111000 00000 012233444432 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
+.+ +.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ +.|+|++.|++. ++.+++|
T Consensus 144 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d 215 (252)
T PRK14272 144 TPA-----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMH-QAARVSD 215 (252)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999863 578888877654 6778999
Q ss_pred eEEEecCCeEEEecChhHHH
Q 045902 415 DIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 415 ~iilL~~G~iv~~G~~~~~~ 434 (1472)
++++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=308.17 Aligned_cols=206 Identities=23% Similarity=0.367 Sum_probs=161.7
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CCCceeEEEEcCeeCCCC-----CCCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK--SLRVSGRVTYCGHELTEF-----VPQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 259 (1472)
++|+|+|+++++||+++|+|||||||||||++|+|..++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998652 212389999999987531 1245799999998888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc----cccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI----CADI 335 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 335 (1472)
+ +||+||+.+.....+.... .+.+ ...+.+++.+++.+ ..++
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-------------------~~~~--------------~~~~~~l~~~~l~~~l~~~~~~ 142 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-------------------KKLD--------------EIVEKSLKGAALWDEVKDRLKK 142 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-------------------HHHH--------------HHHHHHHHHcCCchhhHHHHhc
Confidence 7 8999999886432221000 0000 01233455555532 2333
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
. ...|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 143 ~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~ 214 (250)
T PRK14240 143 S-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHNM-QQASRISDK 214 (250)
T ss_pred C-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH-HHHHhhCCE
Confidence 3 445999999999999999999999999999999999999999999999853 67888887764 477889999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
+++|++|+++..|+.+++.
T Consensus 215 v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 215 TAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=311.25 Aligned_cols=204 Identities=22% Similarity=0.309 Sum_probs=159.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CceeEEEEcCeeCCCC-----CCCceEEEEcCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL--RVSGRVTYCGHELTEF-----VPQRTCAYISQHDLHH 259 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 259 (1472)
.+|+|+|+.+++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 58999999999999999999999999999999999975311 1379999999987431 1245799999998888
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc----ccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD----ICADI 335 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 335 (1472)
+. ||.||+.+.....+... . .+. ..+..++.+|+. +..++
T Consensus 114 ~~-tv~~nl~~~~~~~~~~~------~---------------~~~--------------~~~~~l~~~~l~~~l~~~~~~ 157 (274)
T PRK14265 114 PK-SIYENIAFAPRANGYKG------N---------------LDE--------------LVEDSLRRAAIWEEVKDKLKE 157 (274)
T ss_pred cc-cHHHHHHhHHHhcCchH------H---------------HHH--------------HHHHHHHHcccchhhHHHhcC
Confidence 64 99999987533211000 0 000 012234444442 22333
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.+..|||||||||+||+||+.+|++|||||||+|||..++..+.+.|+++++ +.|+|++.|++ .++.+++|+
T Consensus 158 -----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~ 229 (274)
T PRK14265 158 -----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM-QQASRVADW 229 (274)
T ss_pred -----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCE
Confidence 3456999999999999999999999999999999999999999999999864 57888877665 477889999
Q ss_pred EEEec---------CCeEEEecChhHHH
Q 045902 416 IILLS---------EGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~---------~G~iv~~G~~~~~~ 434 (1472)
+++|+ +|++++.|+.+++.
T Consensus 230 i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 230 TAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEEecccccccccCceEEEeCCHHHHH
Confidence 99997 89999999998874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1472 | ||||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-04 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-05 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-06 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-06 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-06 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-04 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-04 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-04 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-04 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-04 |
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 33/219 (15%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKK 957
+ L Q ++ G + A++G +G GK+TL+D+L G R G IE
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----------- 63
Query: 958 QETFARISGYCEQNDIHSPNVTIYESLL-----YSAWLRLP--KDM-FVEEVMELVEMKA 1009
+ G+ Q ++ + +L + P D + ++ + +
Sbjct: 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH 120
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1068
L LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 121 LAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
TVV T HQP+ + ++ L+ + G
Sbjct: 176 QSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 33/249 (13%), Positives = 80/249 (32%), Gaps = 59/249 (23%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDK-SLRVSGRVTYCGHELTEFV 244
+ ++ + + +LG G GK+TLL L G + + + V + + V
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGF--------V 71
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
PQ +V + + GR + A+ +
Sbjct: 72 PQF-------FSSPFA-YSVLDIVLM-GRSTHIN----TFAKPKSHDYQV-------AMQ 111
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
+ ++ L A + +SGGQ++ + + K
Sbjct: 112 ALDYLNLTHL------------------AKREFTS-----LSGGQRQLILIARAIASECK 148
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISL--LQPAPETYDLFDDIILLSEG 422
+ +DE ++ LD + ++ + + ++T++ + + + +LL++
Sbjct: 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNKQ 205
Query: 423 EIVYQGPRE 431
+ R
Sbjct: 206 NFKFGETRN 214
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 8e-26
Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 31/233 (13%)
Query: 889 MPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGYIE- 946
M M+ Q + E+ L +SG R G + LVG +GAGK+TL+ +AG G I+
Sbjct: 1 MSIVMQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 947 GSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK--DMFVEEVMEL 1004
+ + + A Y Q ++ L + K + +V
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLH---QHDKTRTELLNDVAGA 113
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARA 1057
+ + + LS + +R+ +A + ++ +DEP + LD
Sbjct: 114 LALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ 168
Query: 1058 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
+ + + + G +V + H D+ +L+K GG ++ +G
Sbjct: 169 QSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 47/266 (17%), Positives = 84/266 (31%), Gaps = 76/266 (28%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
L +SG V+ + L+GP G+GK+TLL ++G G + + G L +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAWSAT 69
Query: 247 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRR-EKDAGIKPDPEI 302
AY+SQ V L + + + +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWH-----------------YLTLHQHDKTRTEL-----L 107
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRV--------T 354
+ A A+ +SGG+ +RV
Sbjct: 108 NDVAGALALDDK------------------LGRSTNQ-----LSGGEWQRVRLAAVVLQI 144
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-- 412
T + + L +DE LD + + + + + + +++S +DL
Sbjct: 145 TPQANPAG-QLLLLDEPMNSLDVAQQSALDKILSALSQ-QGLAIVMSS-------HDLNH 195
Query: 413 ----FDDIILLSEGEIVYQGPREYVL 434
LL G+++ G RE VL
Sbjct: 196 TLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGY-PKKQETFA 962
L+ +S G + L+G +GAGKTT + +++ + + G +++ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV 86
Query: 963 RIS-GYCEQNDIHSPNVTIYESLLYSAWL-RLPKDMF---VEEVMELVEMKALRNSLVGL 1017
R Y + N+ E L + A VE E+ + V
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS- 145
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077
S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++
Sbjct: 146 ----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201
Query: 1078 TIH 1080
+ H
Sbjct: 202 SSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 66/237 (27%)
Query: 204 LLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE----------FVPQRTCAYIS 253
L+GP G+GKTT L+ +S S SG VT G + E ++P+ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
M E L F S E + +
Sbjct: 101 ------RNMQGIEYLRFVAGFYA----------SSSSEIEEMV----------------- 127
Query: 314 LKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIST 373
+ +I GL V S G +++ L+ + +DE ++
Sbjct: 128 -------ERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 374 GLDSSTTFQIVRFMRQMVHITDVTMIIS--LLQPAPETYDLFDDIILLSEGEIVYQG 428
GLD ++ + ++Q +T+++S + E L D I L+ G IV G
Sbjct: 176 GLDVLNAREVRKILKQASQ-EGLTILVSSHNM---LEVEFLCDRIALIHNGTIVETG 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-22
Identities = 36/203 (17%), Positives = 82/203 (40%), Gaps = 22/203 (10%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+ ++ G + G +G GKTTL+ ++ + +G I +G P + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGK 79
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDM-FVEEVMELVEMKALRNSLVGLPGVD 1021
I + + I +++ + L A L + + + + +E VE+ L+ +
Sbjct: 80 I-FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKK------LG 132
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1080
LS +R+ +A L+ N I +D+P +D + V++++ + + G ++ +
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192
Query: 1081 QPSIDIFEAFDELFLMKRGGHVI 1103
D + + I
Sbjct: 193 -----ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 5e-15
Identities = 35/251 (13%), Positives = 83/251 (33%), Gaps = 58/251 (23%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240
S +L ++ ++ + GP G GKTTLL+ +S G + Y G +
Sbjct: 17 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 73
Query: 241 TEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
T+ + ++ + + +++V + L GV + K+
Sbjct: 74 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-----------KVNKNE------ 114
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI---SGGQKKRVTTGE 357
L+ + + ++++ + S G +RV
Sbjct: 115 -------------------IMDALESVEV---------LDLKKKLGELSQGTIRRVQLAS 146
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
L+ A+ +D+ +D + ++++ + +++ + +I S E D
Sbjct: 147 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-----REELSYCDVNE 201
Query: 418 LLSEGEIVYQG 428
L +
Sbjct: 202 NLHKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-20
Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 869 MVLPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQ------LLQDVSGAFRPGVLTALV 922
L F+ +L F + D+ + S+ L+ +L G F + ++
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 923 GVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980
G +G GKTTL+ +LAG + G +++S P+K T+
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVAN 1040
+ + F +V++ + + + + V LS + +R+ I + L
Sbjct: 431 RQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIP 485
Query: 1041 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1076
I +DEP++ LD+ I + +R + +T
Sbjct: 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 6e-14
Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 28/189 (14%)
Query: 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSIS---ISGYPKKQETFA 962
RPG + LVG +G GK+T + +LAG + G + I Y + E
Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN 154
Query: 963 RISGYCEQN---------------DIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEM 1007
+ E + I P + E L V+ ++++++
Sbjct: 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPED---VKRYIKILQL 211
Query: 1008 KALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
+ + ++ LS + +R I + V + DEP+S LD + + +R+
Sbjct: 212 ENVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 1068 TVDTGRTVV 1076
+ + V+
Sbjct: 267 LLAPTKYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-12
Identities = 66/424 (15%), Positives = 125/424 (29%), Gaps = 126/424 (29%)
Query: 71 DRVRKTMLKHVLENGRIGYEEVDVSELGMQDKKNLLESILKVVEEDNEKFLLRLRERTDR 130
D V ++ Y V + + L+ + E R R
Sbjct: 289 DFV------CIIYGVPSVYGVVTLPASVREGINIFLDGHIP-----AENLRFRTEALQFR 337
Query: 131 VGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILH 190
+ ++ + + + K + +L+
Sbjct: 338 IADATEDLQNDSASRAFSYPSL----------------------------KKTQGDFVLN 369
Query: 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDK-SLRVSGRVTYCGHELTEFVPQR 247
G S + +++G G+GKTTL++ L+G K D+ V+ PQ+
Sbjct: 370 VEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSM--------KPQK 421
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
A TVR+ + + +
Sbjct: 422 -IAPKFP-------GTVRQLFFKK-----------IRGQFLNPQF--------------- 447
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
V+K L +D D V + +SGG+ +RV L PA
Sbjct: 448 ------------QTDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYL 490
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF------DDIILLSE 421
+DE S LDS + +R+ + T I +D D +I+
Sbjct: 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIV-------EHDFIMATYLADKVIVFEG 543
Query: 422 GEIV--YQGPREYVLD----FFESVG--FRCPERKGAADFLQEVTSRKDQQQYWCKKNEP 473
+ E +L F +++ FR + + ++ S+ D++Q K +
Sbjct: 544 IPSKNAHARAPESLLTGCNRFLKNLNVTFR-RDPNSFRPRINKLDSQMDKEQ---KSSGN 599
Query: 474 YRYV 477
Y ++
Sbjct: 600 YFFL 603
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 8e-09
Identities = 51/261 (19%), Positives = 84/261 (32%), Gaps = 71/261 (27%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
+P ++ L+G G GK+T L+ L+GK +L GR
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFD------------ 135
Query: 247 RTCAYISQHDLHHGEMTVRETLD-FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAF 305
+E + F G L ++ + A IKP +D
Sbjct: 136 -------------DPPEWQEIIKYFRGSELQ-----NYFTKMLEDDIKAIIKP-QYVDNI 176
Query: 306 MKATA--------MSGLKTSLGT---DYVLKILGLDICADIMVGNEMRRGI---SGGQKK 351
+A + L+ +KIL L+ N ++R I SGG+ +
Sbjct: 177 PRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE--------NVLKRDIEKLSGGELQ 228
Query: 352 RVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411
R G V A DE S+ LD + +R ++ +I +D
Sbjct: 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICV-------EHD 280
Query: 412 LF------DDIILLSEGEIVY 426
L D + ++ VY
Sbjct: 281 LSVLDYLSDFVCIIYGVPSVY 301
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 34/228 (14%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGYIEGSISISGYPKKQ 958
+L+ +S G L G++GAGKTTL+++L T G++++ G +
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGK 87
Query: 959 ETF------ARISGYCEQNDIH---SPNVTIYESLL---YSA---WLRLPKDMF--VEEV 1001
+ I G+ + + + ++ + + + + ++ ++
Sbjct: 88 VGYSAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQL 145
Query: 1002 MELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061
++LV M A +G LST +++R+ IA L+ P ++ +DEP +GLD A +
Sbjct: 146 LKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESL 200
Query: 1062 MRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ + + ++ H +I F ++ L+K G I G
Sbjct: 201 LSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 51/258 (19%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
IL +S + +L G G+GKTTLL L+ + SG V G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 247 ----RTC-AYISQ--HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
R ++S + V + + SG +G + + D
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVV-ISGAFKSIG--------VYQDIDDE----- 137
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
++ A +LK++G+ A +G +S G+K+RV L
Sbjct: 138 ------IRNEAHQ----------LLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARAL 176
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHI-TDVTMIISL--LQPAPETYDLFDDI 416
+G + L +DE + GLD ++ + + + MI ++ F I
Sbjct: 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITA---NFSKI 233
Query: 417 ILLSEGEIVYQGPREYVL 434
+LL +G+ + QG E +L
Sbjct: 234 LLLKDGQSIQQGAVEDIL 251
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 8e-20
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+ G R G + +VG +G GKTT + +LAG T G +E ++++ K Q
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----Y 425
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGL 1023
I T+YE L +L + + E+++ + + L + V L
Sbjct: 426 IK--------AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DL 472
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1076
S + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-13
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 29/189 (15%)
Query: 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSIS----ISGYPKK--Q 958
+ + G++ +VG +G GKTT + +LAG+ E + S I + Q
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 959 ETFARISGYCEQNDIHSPNV-TIYESLLYSAWLRLPKDMF--VEEVMELVEMKALRNSLV 1015
F R+ +I P V Y LL PK + V E+++ V+ +V
Sbjct: 166 NYFERLKN----GEI-RPVVKPQYVDLL-------PKAVKGKVRELLKKVDEVGKFEEVV 213
Query: 1016 GLPG--------VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
+ LS + +R+ IA L+ F DEP+S LD R V R +R
Sbjct: 214 KELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 1068 TVDTGRTVV 1076
+ G+ V+
Sbjct: 274 LANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-13
Identities = 67/352 (19%), Positives = 116/352 (32%), Gaps = 89/352 (25%)
Query: 124 LRERTDRVGIEIPKIE-VRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSK 182
+ + R GI ++ EN+ T+ + +E K
Sbjct: 312 SKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVE------YPRLVK 365
Query: 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242
L G ++ + ++GP G GKTT ++ L+G + + G+V +
Sbjct: 366 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTVA-- 420
Query: 243 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
+ PQ YI E TV E LL+++ + ++
Sbjct: 421 YKPQ----YIKAEY----EGTVYE----------------LLSKIDSSKLNSNFY----- 451
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
+LK LG+ D V + +SGG+ +RV L+
Sbjct: 452 -----------------KTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRD 489
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF------DDI 416
A +DE S LD + R +R ++ + T ++ +D+ D +
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVSDRL 542
Query: 417 ILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQE--VTSRKDQQQY 466
I+ EGE G L R+G FL +T R+D
Sbjct: 543 IVF-EGEPGRHG---RALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 50/311 (16%), Positives = 100/311 (32%), Gaps = 61/311 (19%)
Query: 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCA 250
IVK + ++GP G+GKTT ++ L+G+ +L +
Sbjct: 109 YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIR-------- 157
Query: 251 YISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATA 310
++L + ++ E+ K + P+
Sbjct: 158 AFRGNELQNYFERLKN------------------GEIRPVVKPQYVDLLPKAVKGKVREL 199
Query: 311 MSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDE 370
+ + + V+K L L+ D + +SGG+ +RV L+ A F DE
Sbjct: 200 LKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDE 254
Query: 371 ISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF------DDIILLSEGEI 424
S+ LD ++ R +R++ + +++ +DL D I ++
Sbjct: 255 PSSYLDIRQRLKVARVIRRLAN-EGKAVLVV-------EHDLAVLDYLSDVIHVVYGEPG 306
Query: 425 VY----------QGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYW---CKKN 471
VY G E++ + + R + L E + + K+
Sbjct: 307 VYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKD 366
Query: 472 EPYRYVSVPEF 482
+ V
Sbjct: 367 YGSFKLEVEPG 377
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 45/261 (17%), Positives = 101/261 (38%), Gaps = 40/261 (15%)
Query: 915 PGVLTALVGVSGAGKTTLMDVLAG-RKTGG--YIEGSISISGYPKKQETFARISGYCEQN 971
G ++G +G+GKTTL+ ++G G +I G + + R S +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFING-MEVRKIRNYI----RYSTNLPEA 83
Query: 972 DIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMK---ALRNSLVGLPGVDGLSTEQ 1027
+ VT+ + + L+ L +D+ E+++ +++ R + LS Q
Sbjct: 84 --YEIGVTVNDIVYLYEELKGLDRDL-FLEMLKALKLGEEILRRK-------LYKLSAGQ 133
Query: 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1087
+ ++ L + P I+ +DEP +DA ++ R ++ + G+ + H ++
Sbjct: 134 SVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH----ELD 186
Query: 1088 EAF---DELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVSSN 1144
+ G + + E E+ V R+ +++ +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVS-------ELLES-SIVEGERNDALLVLDIMDKKVS 238
Query: 1145 AVETQLNVDFAAIYADSDLYR 1165
V+ L + F A+ + + +Y
Sbjct: 239 IVKGDLGMKFGALGSLNRIYG 259
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 42/262 (16%), Positives = 79/262 (30%), Gaps = 69/262 (26%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
K + L +++ V ++LGP GSGKTTLL+A+SG L SG + G
Sbjct: 11 LSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG----LLPYSGNIFINGM 65
Query: 239 ELTEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIK 297
E+ + R + + +TV + + G+
Sbjct: 66 EVRKIRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGL-------------------- 103
Query: 298 PDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGE 357
+K L + + ++ S GQ V T
Sbjct: 104 DRDLFLEMLK---ALKLGEEILRRKL---------------YKL----SAGQSVLVRTSL 141
Query: 358 MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHIT------DVTMIISLLQPAPETYD 411
L + + +DE +D++ I R++++ ++ M+
Sbjct: 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEY-GKEGILVTHELDMLNL---------- 190
Query: 412 LFDDIILLSEGEIVYQG--PRE 431
+ G + E
Sbjct: 191 YKEYKAYFLVGNRLQGPISVSE 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 9e-19
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+ G + G + +VG +G GKTT + +LAG T G IE ++++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGL 1023
I T+YE L +L + + E+++ + + L + V L
Sbjct: 356 IK--------ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN-----EL 402
Query: 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1076
S + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 58/294 (19%), Positives = 100/294 (34%), Gaps = 82/294 (27%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240
K L G +K + ++GP G GKTT ++ L+G + + G++ +
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 241 TEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
+ PQ YI E TV E LL+++ + ++
Sbjct: 351 --YKPQ----YIKAD----YEGTVYE----------------LLSKIDASKLNSNFY--- 381
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
+LK LG+ D V +SGG+ +RV L+
Sbjct: 382 -------------------KTELLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF------D 414
A +DE S LD + R +R ++ + T ++ +D+ D
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVSD 470
Query: 415 DIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQE--VTSRKDQQQY 466
+++ EGE G + R+G FL +T R+D
Sbjct: 471 RLMVF-EGEPGKYGRALPPMGM----------REGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 8e-12
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 29/180 (16%)
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGR----KTGGYIEGSISISGYPKK--QETFARISGY 967
+ G++ +VG +G GK+T + +LAG+ G I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 968 CEQNDI----------HSPNVTI-YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVG 1016
+I P L K +EEV++ +E++ + +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREIQ 157
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 158 H-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 72/255 (28%)
Query: 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCA 250
+VK + ++GP G+GK+T ++ L+G+ +P
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ--------------------LIP----- 73
Query: 251 YISQHDLHHGEMTVRETLD-FSGRCLGVGTRFELLAELSR-REKDAGIKP-------DPE 301
+L + + F G EL + + + P+
Sbjct: 74 -----NLCGDNDSWDGVIRAFRGN--------ELQNYFEKLKNGEIRPVVKPQYVDLIPK 120
Query: 302 IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI---SGGQKKRVTTGEM 358
+ + + V+K L L+ N + R I SGG+ +RV
Sbjct: 121 AVKGKVIELLKKADETGKLEEVVKALELE--------NVLEREIQHLSGGELQRVAIAAA 172
Query: 359 LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF----- 413
L+ A F DE S+ LD R +R++ ++++ +DL
Sbjct: 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVV-------EHDLAVLDYL 224
Query: 414 -DDIILLSEGEIVYQ 427
D I ++ VY
Sbjct: 225 SDIIHVVYGEPGVYG 239
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 33/217 (15%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L++VS G + G +G+GK+TL+ ++AG T G + G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 964 ISGYCEQNDIHSP-----NVTIYESLLYSAWLRLPKDMFV-EEVMELVEMKALRNSLVGL 1017
G Q P +++ + ++ K+ + + + LV+ KA+ VGL
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEVAFA-----VKNFYPDRDPVPLVK-KAME--FVGL 126
Query: 1018 PGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070
LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 127 DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
G+TV+ H + D + ++++ G ++ G
Sbjct: 187 LGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMII---SL 402
SGG+K+RV ++V L +DE GLD ++R + + T+I+ +
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDI 198
Query: 403 LQPAPETYDLFDDIILLSEGEIVYQG-PRE 431
+ D +++L +G+ V+ G E
Sbjct: 199 ----ETVINHVDRVVVLEKGKKVFDGTRME 224
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-16
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L +G + G + ++G +G GKTT +L G T EGS++ +I
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QIL 332
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLRLPKDM-FVEEVMELVEMKALRNSLVGLPGVDGLS 1024
Y Q + + T+ + L ++ L F EEV + + + L S V LS
Sbjct: 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----DLS 387
Query: 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1079
+ ++L IA L + +D+P+S LD IV + ++ + V I
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 55/294 (18%), Positives = 94/294 (31%), Gaps = 80/294 (27%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240
KK L +G K + +LGP G GKTT + L G+ G VT L
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 241 TEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
+Y Q + + TV++ L+ +
Sbjct: 333 ---------SYKPQRIFPNYDGTVQQYLE--------------------NASKDALSTSS 363
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
+ V K L L + V + +SGG+ +++ L
Sbjct: 364 WF-----------------FEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF------D 414
A +D+ S+ LD + + + ++++ I +DL D
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-------DHDLSIHDYIAD 454
Query: 415 DIILLSEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQE--VTSRKDQQQY 466
II+ +GE G + + G +FL+E VT R+D +
Sbjct: 455 RIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 35/178 (19%), Positives = 73/178 (41%), Gaps = 16/178 (8%)
Query: 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQN-- 971
+ + ++G +G GKTT++ +LAG + + + K E R G N
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 972 -DIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDG-------- 1022
+++S + I + Y + V E++ ++ + ++ + L +
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
LS +RL +A L+ + D+P+S LD R + + +R + + V+ H
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 51/322 (15%), Positives = 111/322 (34%), Gaps = 66/322 (20%)
Query: 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSL-RVSGRVTYCGHELTEFVPQRTCAYIS 253
K + + +LG G GKTT+L+ L+G+ + + +V E+ + +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGK--DEVLKRFRGKEIYNYF 78
Query: 254 QHDLHHGEMTVR--ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAM 311
+ + V + ++++ + L GT E+L ++ R K
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKIDERGK------------------- 118
Query: 312 SGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEI 371
D V ++L + + +SGG +R+ L+ A D+
Sbjct: 119 --------KDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQP 165
Query: 372 STGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF------DDIILLSEGEIV 425
S+ LD + + +R+++ + +I+ +DL D I ++ V
Sbjct: 166 SSYLDVRERMNMAKAIRELLK--NKYVIVV-------DHDLIVLDYLTDLIHIIYGESSV 216
Query: 426 Y----------QGPREYVLDFF--ESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEP 473
Y G ++ + E++ R E K + ++ KD +
Sbjct: 217 YGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKII 276
Query: 474 YRYVSVPEFVEHFKTFHVGQKL 495
+ V++ G+ +
Sbjct: 277 KKLGDFQLVVDNG-EAKEGEII 297
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYP--KKQETF 961
L+ ++ + G +TA++G +G GK+TL G + + G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 962 ARIS---GYCEQNDIHSPNVTIYESLLYS--AW----LRLPKDMF---VEEVMELVEMKA 1009
++ G Q+ P+ ++ + +Y ++ ++LP+D V+ ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH 135
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1068
L++ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 136 LKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 1069 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ G T++ H + D +F+MK G VI G
Sbjct: 191 KELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIIS---L 402
S GQKKRV +LV K L +DE + GLD +I++ + +M +T+II+ +
Sbjct: 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204
Query: 403 LQPAPETYDLFDDIILLSEGEIVYQGPREYVL---DFFESVGFRCP 445
D++ ++ EG ++ QG + V + V R P
Sbjct: 205 ----DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLP 246
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 29/210 (13%)
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-YIEGSIS 950
K+ + E + L++V+ + G +++G SG+GK+T+++++ + T G +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 951 ISGYPKKQETFAR---ISGYCEQ--NDIHSPNVTIYES----LLYSAWLRLPKDMFVEEV 1001
+ + T R I G+ Q N I P +T E+ L++ + + +
Sbjct: 69 TNDLDDDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRA 125
Query: 1002 MELVEMKALRNSLVGLPGVDG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055
+E ++M L LS Q++R+ IA L NP II D+PT LD+
Sbjct: 126 LECLKM-------AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178
Query: 1056 RAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1084
+ +M+ ++ + G+TVV H ++
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 59/238 (24%)
Query: 177 RLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236
+ + + + L +V+ +K ++GP GSGK+T+L + G DK G V
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKP--TEGEVYID 65
Query: 237 GHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRFELLAELSRRE---- 291
+ ++ E +G V +F L+ L+ E
Sbjct: 66 NIKT-------------------NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106
Query: 292 -----KDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG---NEMRR 343
+ + + +A LK+ L + N++
Sbjct: 107 PLIFKYRGAMSGE---ERRKRALEC------------LKMAEL---EERFANHKPNQL-- 146
Query: 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTG-LDSSTTFQIVRFMRQMVHITDVTMII 400
SGGQ++RV L + D+ T LDS T +I++ ++++ T+++
Sbjct: 147 --SGGQQQRVAIARALANNPPIILADQ-PTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 59/254 (23%)
Query: 871 LPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKT 930
L FQ + F++V++ + R + LQDVS PG ALVG SGAGK+
Sbjct: 47 LRFQKGRIEFENVHF-----------SYADGR-ETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 931 TLM-------DVLAGRKTGGYIEGSISISGYPKKQETFA---RISGYCEQNDIHSPNVTI 980
T++ D+ G I I G Q T A G Q D N TI
Sbjct: 95 TILRLLFRFYDI---------SSGCIRIDGQDISQVTQASLRSHIGVVPQ-DTVLFNDTI 144
Query: 981 YESLLY---SAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE----------- 1026
+++ Y +A +EV + + ++++ P +G T+
Sbjct: 145 ADNIRYGRVTAGN--------DEVEAAAQAAGIHDAIMAFP--EGYRTQVGERGLKLSGG 194
Query: 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1086
+++R+ IA ++ P II +DE TS LD + ++ V RT + H+ S +
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAHRLST-V 252
Query: 1087 FEAFDELFLMKRGG 1100
A D++ ++K G
Sbjct: 253 VNA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 83/264 (31%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR----VSGRVTYCGHELTE 242
E L DVS V P + L+GP G+GK+T+L+ L R SG + G ++++
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL-------FRFYDISSGCIRIDGQDISQ 120
Query: 243 F-----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRRE 291
VPQ T L + T+ + + + GR
Sbjct: 121 VTQASLRSHIGVVPQDTV-------LFND--TIADNIRY-GRV----------------- 153
Query: 292 KDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG--ISGGQ 349
A + E++A +A + + Y VG E RG +SGG+
Sbjct: 154 -TA---GNDEVEAAAQAAGIHDAIMAFPEGY-----------RTQVG-E--RGLKLSGGE 195
Query: 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ-MVHITDVTMII----SLLQ 404
K+RV ++ + +DE ++ LD+S I + + + T T+++ S +
Sbjct: 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRT--TIVVAHRLSTVV 253
Query: 405 PAPETYDLFDDIILLSEGEIVYQG 428
A D I+++ +G IV +G
Sbjct: 254 NA-------DQILVIKDGCIVERG 270
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 22/195 (11%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQ 958
++L+ +S + + G +++G SG+GK+TL+ +L T G ++EG + +K+
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKE 75
Query: 959 ETFAR---ISGYCEQ--NDIHSPNVTIYES----LLYSAWLRLPKDMFVEEVMELVEMKA 1009
+ R + G+ Q I P +T E+ +L PK E L+
Sbjct: 76 LSLLRNRKL-GFVFQFHYLI--PELTALENVIVPMLKM---GKPKKEAKERGEYLLSELG 129
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069
L + L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 LGDKLSRKPY--ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 1070 DTGRTVVCTIHQPSI 1084
+ G ++V H+ +
Sbjct: 188 EGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 55/227 (24%), Positives = 83/227 (36%), Gaps = 56/227 (24%)
Query: 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF 243
R EIL +S VK ++G GSGK+TLL L G D G+V G E+
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEV--- 68
Query: 244 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRFELLAELSRRE------KDAGI 296
+E R LG V L+ EL+ E G
Sbjct: 69 ----------------DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK 112
Query: 297 KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIM--VGNEMRRGISGGQKKRVT 354
+A + + L LGL D + E+ SGG+++RV
Sbjct: 113 PKK---EAKERGEYL------------LSELGL---GDKLSRKPYEL----SGGEQQRVA 150
Query: 355 TGEMLVGPAKALFMDEISTG-LDSSTTFQIVRFMRQMVHITDVTMII 400
L LF DE TG LDS+ T +++ ++ + ++++
Sbjct: 151 IARALANEPILLFADE-PTGNLDSANTKRVMDIFLKI-NEGGTSIVM 195
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 30/217 (13%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY-IEGSISISGYPKK 957
++ + L+ ++ G ALVG +G+GK+T+ +L R Y EG I I G
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVN 84
Query: 958 QETFA---RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSL 1014
+ I G Q D N TI ++LY +L EEV++ + L + +
Sbjct: 85 KYNRNSIRSIIGIVPQ-DTILFNETIKYNILYG---KLDATD--EEVIKATKSAQLYDFI 138
Query: 1015 VGLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
LP T +R+R+ IA L+ +P I+ DE TS LD++ + +
Sbjct: 139 EALP--KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1064 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100
V + + RT++ H+ S I A + + L+ +G
Sbjct: 197 AVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 55/263 (20%), Positives = 99/263 (37%), Gaps = 82/263 (31%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR---VSGRVTYCGHELTEF 243
L ++ + L+G GSGK+T+ + L R G + G + ++
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-------YRFYDAEGDIKIGGKNVNKY 86
Query: 244 -----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREK 292
VPQ T L + T++ + + G+
Sbjct: 87 NRNSIRSIIGIVPQDTI-------LFNE--TIKYNILY-GK------------------L 118
Query: 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI--SGGQK 350
DA D E+ K+ + +L + D +VGN +G+ SGG++
Sbjct: 119 DA---TDEEVIKATKSAQLYDFIEALPKKW-----------DTIVGN---KGMKLSGGER 161
Query: 351 KRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ-MVHITDVTMII----SLLQP 405
+R+ L+ K + DE ++ LDS T + + + + T +II S +
Sbjct: 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRT--LIIIAHRLSTISS 219
Query: 406 APETYDLFDDIILLSEGEIVYQG 428
A + IILL++G+IV +G
Sbjct: 220 A-------ESIILLNKGKIVEKG 235
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 30/194 (15%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKK 957
++ Q+L+D+S +P + A G SG GK+T+ +L R Y G I+I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RF---YQPTAGEITIDGQPID 67
Query: 958 QETFA----RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS 1013
+ +I G+ Q D TI E+L Y L D E++ +++++ R+
Sbjct: 68 NISLENWRSQI-GFVSQ-DSAIMAGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSF 121
Query: 1014 LVGLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062
+ +P D L+TE QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 122 VENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1063 RTVRNTVDTGRTVV 1076
+ + +++ GRT +
Sbjct: 180 KAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 4e-04
Identities = 50/260 (19%), Positives = 91/260 (35%), Gaps = 74/260 (28%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLR----VSGRVTYCGHELTE 242
+IL D+S +P+ + GP G GK+T+ L R +G +T G +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDN 68
Query: 243 FVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDA-GIKP 298
+ ++SQ ++ +G + RE G++
Sbjct: 69 ISLENWRSQIGFVSQ-----------DSAIMAG---------------TIRENLTYGLEG 102
Query: 299 DP---EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI--SGGQKKRV 353
D ++ + ++ + VG RG+ SGGQ++R+
Sbjct: 103 DYTDEDLWQVLDLAFARSFVENMPDQL-----------NTEVGE---RGVKISGGQRQRL 148
Query: 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVR-FMRQMVHITDVTMII----SLLQPAPE 408
+ K L +DE + LDS + + + M T T++I S + A
Sbjct: 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRT--TLVIAHRLSTIVDA-- 204
Query: 409 TYDLFDDIILLSEGEIVYQG 428
D I + +G+I G
Sbjct: 205 -----DKIYFIEKGQITGSG 219
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 5e-13
Identities = 96/595 (16%), Positives = 185/595 (31%), Gaps = 180/595 (30%)
Query: 53 EEDEEELKWAAIERLPTY--DRVRKTMLKHVLENGR--IGYEEVDVSELGMQDKKNLLES 108
E E + ++ I L + V K V + + + EE+D + +D +
Sbjct: 10 ETGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLR 66
Query: 109 ILKVVEEDNEKFLLRLRERTDRVGIE--IPKIEVRFENLSIEGDAYVGTRALPTLLNTSL 166
+ + E+ + + E R+ + + I+ S+ Y+ R +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR------DRLY 120
Query: 167 NAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS 226
N F + S+ + L ++P++ L+ G GSGKT + AL
Sbjct: 121 N---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYK 175
Query: 227 L--RVSGRVTY-------CGHELTEFVPQRTCAYISQ-------------HDLHHGEMTV 264
+ ++ ++ + + E + Q+ I +H + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 265 RET------------LD----------FSGRC--LGVGTRFELLAELSRREKDAGIKPDP 300
R L F+ C L + TRF+ + + I D
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDH 293
Query: 301 EIDAFMKATAMSGLKTSLGTDY------VLKILGLDICADIMVGNEMRRGISGGQKKRVT 354
S L L VL + ++ +R G++
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLA-------- 342
Query: 355 TGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQM----------VHITDVTMII---- 400
T + K + D+++T ++SS R+M HI + + +
Sbjct: 343 TWDNW----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 401 ----------------SLL--QPAPETY---DLFDDIILLSEGE------IV--YQGPRE 431
SL+ QP T ++ ++ + E E IV Y P+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 432 Y--------VLD--FFESVG---------------------FRCPERK------------ 448
+ LD F+ +G FR E+K
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 449 GAADFLQEVTSRKDQQQYWCKKNEPY-RYV-SVPEFVEHFKTFHVGQKLTDELRV 501
+ LQ++ K + Y C + Y R V ++ +F+ + + K TD LR+
Sbjct: 519 SILNTLQQL---KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 5e-10
Identities = 128/833 (15%), Positives = 220/833 (26%), Gaps = 320/833 (38%)
Query: 463 QQQYWCKKNEPYRYVSVPEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISN 522
+ QY K V FV++F V D + K + + +
Sbjct: 13 EHQYQYKDILS---VFEDAFVDNFDCKDV----QDMPKSILSKEE------IDHIIMSKD 59
Query: 523 WE-----LFKTCFAREWLLM-KRNSFVYVF--KTFQIT---IMSIIAFTVYLRTQMTYGQ 571
LF W L+ K+ V F + +I +MS I T + M
Sbjct: 60 AVSGTLRLF-------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMT-- 109
Query: 572 LIDGGKFYGALFFSLVNVMFNGMAELA-LTIVRLPAFYKQRDFLFFPAWAFALPIWVLRI 630
++ + ++N A + RL P LR
Sbjct: 110 ---------RMYIEQRDRLYNDNQVFAKYNVSRLQ------------------PYLKLRQ 142
Query: 631 PLSLMESSIWILLTYYTIGFAPSATRFFRQLLAFFSVHQMGLSLFRFIAAVSRTQVVANT 690
L + + +L + + +T V +
Sbjct: 143 ALLELRPAKNVL------------------------IDGVL--------GSGKTWVALDV 170
Query: 691 LGTFTLLLVFVLGGFIVAKDDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSA-----P 745
++ + F W+ SP + + L +D W++
Sbjct: 171 CLSYKVQCKMDFKIF---------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 746 NPARFLVDEPTVGKALLKARGMYTE-----DHMFWI--CIVALLGFSLFFNL-CFIAALT 797
N + + LLK++ Y ++ A FNL C I T
Sbjct: 222 NIKLRIHSIQAELRRLLKSK-PYENCLLVLLNV-QNAKAWNA-------FNLSCKILLTT 272
Query: 798 -------YLDPFKETKSVMMEHNDGGKSKKQSNSHAQQNMRAADMSPPSTAPLFEGIDMA 850
+L T + H+ ++P L
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMT-------------------LTPDEVKSLLL----K 309
Query: 851 VMNTPDNSIIGATSTRKGMVLPFQ-----PLSLAFDHVNYFVDMPAEMKSQGIEENRLQL 905
++ LP + P L+ + AE G+
Sbjct: 310 YLDCRPQD------------LPREVLTTNPRRLS---------IIAESIRDGL--ATWDN 346
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
+ V L + IE S+++ + ++ F R+S
Sbjct: 347 WKHV------------------NCDKLTTI---------IESSLNVLEPAEYRKMFDRLS 379
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLST 1025
+ P+ I LL W D+ +VM +V K + SLV
Sbjct: 380 -------VFPPSAHIPTILLSLIWF----DVIKSDVMVVVN-KLHKYSLV---------E 418
Query: 1026 EQRKRLTIAVELVANPSI--IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083
+Q K TI SI I+++ + A +H+
Sbjct: 419 KQPKESTI--------SIPSIYLELKVKLENEYA---------------------LHRSI 449
Query: 1084 IDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVPKIRDGYNPATWVLEVS- 1142
+D H Y P S L +P D Y + +
Sbjct: 450 VD---------------H--YNIPKTFDSDDL---------IPPYLDQY----FYSHIGH 479
Query: 1143 --SNAVETQLNVDFAAIYADSDLYRRNQQLIKELSSP--APGS-KDLYFTTKYSQDFITQ 1197
N + F ++ D +R +Q I+ S+ A GS + K+ + +I
Sbjct: 480 HLKNIEHPERMTLFRMVFLD---FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC- 535
Query: 1198 CKTCFWKQHWSYWRNPKYNAIRFFLTTVIGALFGMIFWDKGEKTSKEQDLINL 1250
Y R NAI FL + L SK DL+ +
Sbjct: 536 ------DNDPKYER--LVNAILDFLPKIEENLI----------CSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 7e-10
Identities = 74/490 (15%), Positives = 136/490 (27%), Gaps = 137/490 (27%)
Query: 901 NRLQLLQDVSGAF---RPGVLTALVGVSGAGKTTL-MDVLAGRKTGGYIEGSI---SISG 953
+RLQ + A RP + GV G+GKT + +DV K ++ I ++
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 954 YPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS 1013
+ + Q D PN T + ++L E+ L++ K N
Sbjct: 192 CNSPETVLEMLQKLLYQID---PNWTSRSDHSSN--IKLRIHSIQAELRRLLKSKPYENC 246
Query: 1014 LVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1072
L+ L V N + + ++ T R V
Sbjct: 247 LLVL---LN---------------VQNAKAW------NAFNLSCKILL--TTRFKQVTDF 280
Query: 1073 RTVVCTIHQPSIDIFEAFDE-----LFLMKRGGHVIYAGPLGRQSHKLVEYFEAVPGVP- 1126
+ T H L L L + L E + P
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKY----------LDCRPQDLPR--EVLTTNPR 328
Query: 1127 -------KIRDGYNPATW-------------VLEVSSNAVET----QLNVDFA------- 1155
IRDG ATW ++E S N +E ++ +
Sbjct: 329 RLSIIAESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 1156 ------AIYADSDLYRRNQQLIKELSS-------PAPGSK---DLYFTTKYSQDFITQCK 1199
++ + ++ +L P + +Y K +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-- 444
Query: 1200 TCFWKQHWSYWRN--PKYNAIRFFLTTVIGA--LFGMIFWDKGE--KTSKEQDLINLLGA 1253
H R+ YN + F + + L + G K + + + L
Sbjct: 445 -----LH----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 1254 MYSAVLFLGASNASSVTSVVAIERTVFYRERAAGMYSSLTYAFAQVSIEAIYVSIQTIVY 1313
++ F +E+ + + A S+ Q+ Y+ Y
Sbjct: 496 VFLDFRF--------------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 1314 SLLLYSMIGF 1323
L+ +++ F
Sbjct: 542 ERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-05
Identities = 79/566 (13%), Positives = 153/566 (27%), Gaps = 185/566 (32%)
Query: 247 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFM 306
T YI Q D + + V F+ + +R + +L R+ ++P +
Sbjct: 108 MTRMYIEQRDRLYNDNQV-----FAKYNV---SRLQPYLKL--RQALLELRPAKNVLID- 156
Query: 307 KATAMSGL-KTSLGTDYVLKILGLDICADIMVGNEMRRGI---SGGQKKRVTTGEMLVGP 362
+ G KT + LD+C V +M I + E ++
Sbjct: 157 ---GVLGSGKTWVA---------LDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEM 201
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL---QPAPETYDLFDDIILL 419
+ L +D + T + + I + + L +P + ++
Sbjct: 202 LQKLLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--- 253
Query: 420 SEGEIVYQGPREYVLDFFESVGFRCPERKGAADFLQEVTSRKDQQQYWCKKNEPYRYVSV 479
Q + + F C L +T+R + V
Sbjct: 254 -------QNAK--AWNAFN---LSCK-------IL--LTTR---------------FKQV 277
Query: 480 PEFVEHFKTFHVGQKLTDELRVPYDKSKTHPAGLVKKRYGISNWELFKTCFAREWLLMKR 539
+F+ T H+ D + + L+ K +L RE ++
Sbjct: 278 TDFLSAATTTHISL---DHHSMTLTPDEV--KSLLLKYLDCRPQDL-----PRE--VLTT 325
Query: 540 NSFVYVFKTFQITIMSIIAFTVYLRTQMTYGQLIDGGKFYGALFFSLVNVM-FNGMAELA 598
N +SIIA + DG + + VN + E +
Sbjct: 326 NPRR----------LSIIA-----------ESIRDGLATWD--NWKHVNCDKLTTIIESS 362
Query: 599 LTIVRLPAFYKQR--DFLFFPAWAFALPIWVLRIPLSLMESSIWILLTYYTIGFAPSATR 656
L ++ PA Y++ FP A IP L+ IW + + +
Sbjct: 363 LNVLE-PAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSDVMV--VVNK 410
Query: 657 FFRQLLAF-------FSVHQMGLSLFRFIAAVSRTQVVANTLGTFTLLLVFVLGGFIVAK 709
+ L S+ + L L + + + + + + + F I
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 710 DDIKPWMIWGYYVSPMSYGQNAIVLNEFLDERWSAPNPARFLVDEPTVGKALLKARGMYT 769
D Y+ S + + LK
Sbjct: 469 LD-------QYFYSHIGHH---------------------------------LKNIEHPE 488
Query: 770 EDHMFWICIVALLGFSLFFNLCFIAA 795
+F +F + F+
Sbjct: 489 RMTLFR---------MVFLDFRFLEQ 505
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 65/216 (30%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISI 951
+ + +L +++ + + G + +VG SG+GK+TL G+ + I
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLI 68
Query: 952 SGYPKK---------------QET--FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994
G+ Q+ R +I +++ +
Sbjct: 69 DGHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLAN-----P 108
Query: 995 DMFVEEVME----------LVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII 1044
M VE+V+ + E++ N++VG G GLS QR+R+ IA LV NP I+
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKIL 167
Query: 1045 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1080
DE TS LD + ++MR + GRTV+ H
Sbjct: 168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 44/203 (21%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI--EGSISISGYPKKQ 958
+ L VS + G +T ++G +G+GK+TL++V+ G + G + E I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK-DITNKEPAE 78
Query: 959 -------ETFARISGYCEQNDIHS-------PNVTI-----YESLLYSAWLRLPKDM--- 996
TF Q N+ I ES L S + +
Sbjct: 79 LYHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 997 ---FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1053
+++E +++ L + G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1054 DARAAAIVMRTVRNTVDTGRTVV 1076
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 63/260 (24%), Positives = 95/260 (36%), Gaps = 60/260 (23%)
Query: 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQ 246
L VS V +TL++GP GSGK+TL+ ++G K+D GRV + ++T P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-----EGRVYFENKDITNKEPA 77
Query: 247 RTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
Y I Q EMTV E L C G L + +++
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-------- 129
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
M A +L+ L L D G +SGGQ K V G L+
Sbjct: 130 ---MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMV--HIT--------DVTMIISLLQPAPETYDL 412
K + MDE G+ I + ++ IT D+ +
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYI----------- 220
Query: 413 FDDIILLSEGEIVYQG-PRE 431
D + ++ G+I+ +G E
Sbjct: 221 -DHLYVMFNGQIIAEGRGEE 239
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 56/208 (26%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKK---- 957
Q+LQ ++ PG +TALVG +G+GK+T+ +L Y G + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NL---YQPTGGKVLLDGEPLVQYDH 88
Query: 958 -----------QET--FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMEL 1004
QE F R + E++ Y L + +EE+ +
Sbjct: 89 HYLHTQVAAVGQEPLLFGR---------------SFRENIAYG----LTRTPTMEEITAV 129
Query: 1005 VEMKALRNSLVGLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGL 1053
+ + G P G TE QR+ + +A L+ P ++ +D TS L
Sbjct: 130 AMESGAHDFISGFP--QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 1054 DARAAAIVMRTV-RNTVDTGRTVVCTIH 1080
DA V R + + RTV+
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 47/220 (21%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKKQETF 961
Q+L+ ++ + G ALVG SG GK+T + ++ Y ++G +SI G +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINV 459
Query: 962 ----ARISGYCEQNDIHSP---NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR--- 1011
I G Q P TI E++ Y + M+ +E KA++
Sbjct: 460 RYLREII-GVVSQE----PVLFATTIAENIRYGR---------EDVTMDEIE-KAVKEAN 504
Query: 1012 ------------NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059
++LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563
Query: 1060 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+V + GRT + H+ S + A D + G
Sbjct: 564 VVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 5e-10
Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 51/223 (22%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISISGYPK 956
+LQ +S + G ALVG SG GK+T++ D +AG S+ + G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG---------SVFLDGKEI 1097
Query: 957 KQETFARISGYCEQNDIHS--P---NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR 1011
KQ + Q I S P + +I E++ Y R+ EE++ A +
Sbjct: 1098 KQ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY---EEIVR-----AAK 1146
Query: 1012 ---------------NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
N+ VG G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+ +V + + GRT + H+ S I A D + +++ G
Sbjct: 1206 SEKVVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 3e-11
Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 37/165 (22%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
LL + + G +G GK+TLM +A + G+P ++E R
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CR 496
Query: 964 ISGYCEQN-DIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPG--- 1019
Y E + D + ++ + FV E + +A+++ L+
Sbjct: 497 T-VYVEHDIDGTHSDTSVLD--------------FVFE-SGVGTKEAIKDKLIEFGFTDE 540
Query: 1020 -----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059
+ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+P + + D++ S ++GP G+GK+TL+ L+G+ + SG V Y
Sbjct: 681 YPGTSKP--QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEV-YTHE 734
Query: 239 ELTEFVPQRTCAYISQHDLHHGEMTVRET-LDFSGRCLGVGTRFELLAELSRREKDAGIK 297
AYI QH H E + +T ++ G E + +R+ + +
Sbjct: 735 NC-------RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAE 787
Query: 298 PDPEI 302
+I
Sbjct: 788 AMNKI 792
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 9e-10
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKKQETFA- 962
L++++ G ALVG SG+GK+T+ ++ T Y EG I + G+ ++ T A
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLREYTLAS 414
Query: 963 --RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
Q ++H N T+ ++ Y+ ++ E++ E M + + +
Sbjct: 415 LRNQVALVSQ-NVHLFNDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMD-- 467
Query: 1021 DGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
+GL T QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 468 NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 27/167 (16%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGY--IEGSISISGYPKKQETFA- 962
L VS + G ALVG SG+GK+T+ ++ T Y GSI + G+ +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 963 --RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
R Q ++H N TI ++ Y+A + E++ + + +P
Sbjct: 415 LRRHFALVSQ-NVHLFNDTIANNIAYAA----EGEYTREQIEQAARQAHAMEFIENMP-- 467
Query: 1021 DGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
GL T QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 43/198 (21%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L+++S + PG L+G +G+GK+TL+ EG I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----------- 82
Query: 966 GYCEQNDIHS-------PNVTIY--ESLLYSAWLRLPKDMFVE-------EVMELVEMKA 1009
S + + ++S R D +V + V +++
Sbjct: 83 ------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRS 136
Query: 1010 LRNSLVG------LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
+ G + G LS ++ + +A +++ I+ +DEP++ LD I+ R
Sbjct: 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196
Query: 1064 TVRNTVDTGRTVVCTIHQ 1081
T++ TV+ +
Sbjct: 197 TLKQAF-ADCTVILCEAR 213
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 920 ALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETFARISGYCEQNDIHSP 976
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 977 NVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDG-----LSTEQRKR 1030
++++Y ++ Y LR + + V E+ E +G+ + LS +R+R
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRRVREMAEK-------LGIAHLLDRKPARLSGGERQR 134
Query: 1031 LTIAVELVANPSIIFMDEPTSGLDAR 1056
+ +A LV P ++ +DEP S +D +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 42/216 (19%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L+D++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 964 ISGYCEQNDIHSP---NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
IS +C Q + TI E+++ ++ + V ++ L +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY----DEYRYRSV---IKACQLEEDISKFAEK 148
Query: 1021 D-------G--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
D G LS QR R+++A + + + +D P LD + + +
Sbjct: 149 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+T + + ++ + D++ ++ G + G
Sbjct: 209 NKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 139 EVRFENLSIEGDAYVGTRALPTLLNTSLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKP 198
EV EN++ + G N + L +L D++ ++
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIER 63
Query: 199 SRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYC 236
++ + G G+GKT+LL + G S+ ++ SGR+++C
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 104
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 40/215 (18%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPK 956
EE +L+D++ G L A+ G +GAGKT+L+ ++ G + EG I SG
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG--- 69
Query: 957 KQETFARISGYCEQNDIHSP---NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS 1013
RIS +C Q TI E++++ +++ L
Sbjct: 70 ------RIS-FCSQ----FSWIMPGTIKENIIFG------VSYDEYRYRSVIKACQLEED 112
Query: 1014 LVGLPGVD---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+ D LS QR R+++A + + + +D P LD + +
Sbjct: 113 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 1065 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+ +T + + ++ + D++ ++ G
Sbjct: 173 CVCKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYC 236
+L D++ ++ ++ + G G+GKT+LL + G S+ ++ SGR+++C
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC 74
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-09
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 36/178 (20%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGYIEGSISI 951
+N +L+D++ + G A VG+SG GK+TL+ DV G I I
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---------TSGQILI 400
Query: 952 SGYPKKQETFA---RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVME----- 1003
G+ K G +Q D + T+ E++L R EEV+E
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQ-DNILFSDTVKENILLG---RPTATD--EEVVEAAKMA 454
Query: 1004 -----LVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
++ + ++ VG GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 455 NAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 42/210 (20%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L ++ + G L A+VG G GK++L+ L K EG ++I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 964 ISGYCEQNDIHSP---NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGV 1020
++ Y Q N ++ E++L+ + +++ AL L LP
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG------CQLEEPYYRSVIQACALLPDLEILPSG 116
Query: 1021 DG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV--RNTV 1069
D LS Q++R+++A + +N I D+P S +DA + V +
Sbjct: 117 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176
Query: 1070 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+T + H + D + +M G
Sbjct: 177 LKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYC 236
L+ ++ + + ++G G GK++LL AL K + + + G V Y
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYV 71
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 26/163 (15%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQETF 961
++ VS R G + L+G SG+GKTT++ ++AG R T G +I G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK-RVTDLPPQK--- 86
Query: 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLR---LPKDMFVEEVMELVEMKALRNSLVGLP 1018
R G QN ++T+Y+++ + LR +PKD V EL+ + L
Sbjct: 87 -RNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDARVRELLRF-------MRLE 136
Query: 1019 GVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 137 SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 40/172 (23%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFAR 963
L D+S + PG + ++G SG GKTTL+ LAG + G IS+SG
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD----SGEISLSG--------KT 67
Query: 964 ISGYC-----EQNDIHS--------PNVTIYESLLYS-AWLRLPKDMFVEEVMELVEMKA 1009
I + + P++T+Y ++ Y + + + ++E
Sbjct: 68 IFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE--- 124
Query: 1010 LRNSLVGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
L G+ + G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 125 ----LTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEG-----SISISGYPK 956
L +V+ G ++G SGAGKTT M ++AG + G Y + + + P+
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 957 KQET---FARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRN 1012
++ F Q PN+T +E++ + + K+ + V E+ ++ + +
Sbjct: 81 DRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 1013 SLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
L P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 133 VLNHFPR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRV-SGRVTYCGHELTEF 243
+ + + V ++ L+G G+GKTT L A++G +R G++ + G ++T
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG----LVRAQKGKIIFNGQDITNK 73
Query: 244 VPQRTCAYISQHDLHH--------GEMTVRETL 268
I++ + E+TV E L
Sbjct: 74 PAHV----INRMGIALVPEGRRIFPELTVYENL 102
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 52.8 bits (128), Expect = 2e-07
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 29/190 (15%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYI--EGSISISGYPK 956
+ ++ + G + L+G +GAGKTT + +AG R G I G I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ-DITNKPA 75
Query: 957 KQETFARISGYCEQNDIHSP-------NVTIYESLLYSAWLRLPKDMF---VEEVMELV- 1005
I+ P +T+YE+L+ A+ R K+ +E + L
Sbjct: 76 HVINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP 127
Query: 1006 EMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
+K L G LS +++ L I L++ P ++ MDEP+ GL + V +
Sbjct: 128 RLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 1066 RNTVDTGRTV 1075
+ G T+
Sbjct: 183 QKINQEGTTI 192
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 27/164 (16%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--YIEGSISISGYPKKQETF 961
L +VS G + ++G SGAGK+TL+ + R T G ++G ++ + + T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG-QELTTLSESELTK 102
Query: 962 ARIS-GYCEQ--NDIHSPNVTIYESLLYSAWLRL---PKDMFVEEVMELVEMKALRNSLV 1015
AR G Q N + S V + ++ L L PKD V EL+ LV
Sbjct: 103 ARRQIGMIFQHFNLLSSRTV--FGNVALP--LELDNTPKDEVKRRVTELLS-------LV 151
Query: 1016 GLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054
GL LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETFA 962
L ++S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVD 1021
+ QN P++ + ++L + ++ + V + ++++ L +
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----L 126
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 29/157 (18%)
Query: 921 LVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGY------PKKQET---FARISGYCEQ 970
L+G SG+GK+TL+ +AG G I PK + F Q
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKDRNVGLVF--------Q 82
Query: 971 NDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029
N P++T+Y+++ + LR P++ ++V E+ +M + L P LS Q++
Sbjct: 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW--QLSGGQQQ 140
Query: 1030 RLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1064
R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 1023 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1077 CTIHQPSIDIFEAFDELFLMKRGGHV 1102
H ++ +A D + +
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGS 332
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-06
Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 77/230 (33%)
Query: 879 AFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM----- 933
F +V + ++ + +L+D++ +PG ALVG +G+GKTT++
Sbjct: 356 EFKNVWF-----------SYDKKK-PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR 403
Query: 934 --DVLAGRKTGGYIEGSISISGYPKK----------QETFARISGYCEQNDIHSPNVTIY 981
DV G+ ++G I I + Q+T S T+
Sbjct: 404 FYDVDRGQIL---VDG-IDIRKIKRSSLRSSIGIVLQDTILF-ST------------TVK 446
Query: 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV-----GLP-GVD--------GLSTEQ 1027
E+L Y EE+ E A + + LP G + LS Q
Sbjct: 447 ENLKYG---NP--GATDEEIKE-----AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496
Query: 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRNTVDTGRT 1074
R+ L I +ANP I+ +DE TS +D + + M + G+T
Sbjct: 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM----EGKT 542
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 33/202 (16%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP-KKQETF 961
++L+ VS R G + +++G SG+GK+T + + + EG+I ++G
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 76
Query: 962 ARISGYCEQNDIHS---------------PNVTIYESLLYS--AWLRLPKDMFVEEVMEL 1004
++N + ++T+ E+++ + L L K E ++
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 136
Query: 1005 VEMKALRNSLVGLPG-VDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058
+ VG+ G LS Q++R++IA L P ++ DEPTS LD
Sbjct: 137 LAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1059 AIVMRTVRNTVDTGRTVVCTIH 1080
V+R ++ + G+T+V H
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH 211
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 31/195 (15%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFA 962
L++L+ ++ R G + ++G SG+GK+T + L + + EG I I G K +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK--- 91
Query: 963 RISGYCEQNDIHS---------------PNVTIYESL-LYSAWLR-LPKDMFVEEVMELV 1005
+++ P++T+ ++ L +R P++ + MEL+
Sbjct: 92 -------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELL 144
Query: 1006 EMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
+ L++ P LS Q +R+ IA L P I+ DEPTS LD V+ +
Sbjct: 145 DKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202
Query: 1066 RNTVDTGRTVVCTIH 1080
+ + G T+V H
Sbjct: 203 KQLANEGMTMVVVTH 217
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 921 LVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGY------PKKQE---TFARISGYCEQ 970
L+G SG GKTT + ++AG + EG I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 971 NDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029
+ P++T+YE++ + ++ PKD + V E+ + L P LS QR+
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA--QLSGGQRQ 148
Query: 1030 RLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1064
R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 29/177 (16%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGY----- 954
+++ + VS + G AL+G SG GKTT + +LAG G I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 955 -PKKQET---FARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKA 1009
PK +E F QN P++T++E++ + R + KD + V+E+
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL 122
Query: 1010 LRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1064
+ N L P LS Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 123 IDNLLDRKPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 921 LVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGYPKKQETFARISGYCE---------- 969
L+G SG GKTT + ++AG + G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 970 QNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028
Q+ P++T+Y+++ + LR +P+ + V E+ E+ L L P LS QR
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR--ELSGGQR 145
Query: 1029 KRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1064
+R+ + +V P + MDEP S LDA R MR
Sbjct: 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1088
RL +++ L S++ +DEPT LD ++ + + V+ H
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE----- 124
Query: 1089 AFDELFLMKRGGHVIYAGPLG 1109
L HVI
Sbjct: 125 ------LKDAADHVIRISLEN 139
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 42/205 (20%), Positives = 84/205 (40%), Gaps = 57/205 (27%)
Query: 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM--- 933
S++F++V + + + +L V+ + +PG L A++G +G+GK+TLM
Sbjct: 341 SVSFENVEF--------RYFENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
Query: 934 ----DVLAGRKTGGYIEGSISISGYPKK---QETFARISGYCEQNDIHSPNV----TIYE 982
D G + + + + Q V TI E
Sbjct: 390 PRLIDP---------ERGRVEVDELDVRTVKLKDLRGHISAVPQE-----TVLFSGTIKE 435
Query: 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE-----------QRKRL 1031
+L + +D +E++E ++ + + ++ LP +G + Q++RL
Sbjct: 436 NLKWGR-----EDATDDEIVEAAKIAQIHDFIISLP--EGYDSRVERGGRNFSGGQKQRL 488
Query: 1032 TIAVELVANPSIIFMDEPTSGLDAR 1056
+IA LV P ++ +D+ TS +D
Sbjct: 489 SIARALVKKPKVLILDDCTSSVDPI 513
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 51/205 (24%), Positives = 71/205 (34%), Gaps = 57/205 (27%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP- 245
IL +S V P + ++GP GSGK+TL L+G+ D + G V + G +L P
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPE 92
Query: 246 QRTCA-------Y---ISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
R Y I GV +F L L+ G
Sbjct: 93 DRAGEGIFMAFQYPVEIP----------------------GVSNQFFLQTALNAVRSYRG 130
Query: 296 IKPDPEIDAFMK----ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKK 351
+ D F A+ + L T V N G SGG+KK
Sbjct: 131 QETLDRFD-FQDLMEEKIALLKMPEDLLTRSV---------------NV---GFSGGEKK 171
Query: 352 RVTTGEMLVGPAKALFMDEISTGLD 376
R +M V + +DE +GLD
Sbjct: 172 RNDILQMAVLEPELCILDESDSGLD 196
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP 245
IL V+ +V + L+GP G+GK+TL + L+G + ++ G + G + E P
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSP 74
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1472 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.98 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.9 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.89 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.89 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.87 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.86 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.84 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.84 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.81 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.81 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.79 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.79 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.79 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.78 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.77 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.77 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.74 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.74 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.73 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.72 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.72 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.71 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.71 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.71 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.68 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.68 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.67 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.67 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.66 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.66 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.65 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.65 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.64 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.63 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.62 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.62 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.62 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.61 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.61 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.6 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.6 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.6 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.59 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.59 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.59 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.58 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.55 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.54 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.54 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.52 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.51 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.51 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.5 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.5 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.49 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.49 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.48 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.47 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.47 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.46 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.46 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.46 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.46 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.45 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.44 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.44 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.43 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.43 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.43 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.43 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.42 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.42 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.4 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.38 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.38 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.37 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.36 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.35 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.34 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.34 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.33 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.32 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.29 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.28 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.26 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.26 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.25 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.24 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.23 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.22 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.22 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.22 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.21 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.21 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.21 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.21 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.19 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.16 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.16 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.15 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.15 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.14 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.14 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.12 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.12 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.11 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.1 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.1 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.08 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.07 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.07 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.05 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.05 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.05 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.04 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.03 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.03 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.02 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.01 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.01 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.01 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.0 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.98 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.98 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.98 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.95 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.95 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.95 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.91 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.9 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.88 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.85 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.85 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.84 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.83 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.83 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.82 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.82 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.82 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.8 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.78 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.74 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.72 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.72 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.71 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.69 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.69 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.69 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.67 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.65 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.64 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.64 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.63 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.63 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.62 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.62 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.56 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.55 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.53 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.5 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.48 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.48 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.46 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.45 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.44 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.44 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.4 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.38 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.37 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.33 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.3 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.3 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.3 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.28 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.27 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.27 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.23 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.23 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.22 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.2 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.19 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.14 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.13 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.06 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.04 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.03 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.03 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.0 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.99 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.95 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.93 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.9 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.88 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.85 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.83 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.81 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.79 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.71 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.71 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.7 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.69 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.67 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.61 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.61 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.59 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.58 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.55 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.54 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.5 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.5 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.49 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.47 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.44 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.44 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.43 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.41 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.4 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.39 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.36 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.35 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.35 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.33 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.3 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.3 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.3 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.29 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.28 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.26 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.22 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.19 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.19 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.18 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.15 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.13 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.12 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.11 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.07 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.07 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.03 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.02 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.01 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.0 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.98 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.98 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.94 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.9 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.84 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.83 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.82 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.82 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.8 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.8 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.75 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.75 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.74 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.74 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.74 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.74 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.68 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.66 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.64 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.62 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.61 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.6 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.6 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.58 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.57 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.54 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.47 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.37 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.35 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.35 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.35 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.34 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.27 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.19 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.18 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.14 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.13 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.11 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.1 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.09 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.07 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.06 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.06 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.04 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.0 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.0 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.0 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.98 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.98 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.96 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.94 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.89 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.89 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.86 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.84 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.82 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.81 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.81 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.81 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.76 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.76 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.74 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.74 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.7 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.69 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.69 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.64 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.64 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.62 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.59 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.51 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.5 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.49 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.47 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.44 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.41 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.4 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.39 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.37 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.37 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.33 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.3 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.28 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.23 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.2 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.15 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.06 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.05 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.03 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.01 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.01 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.0 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.97 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.96 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.95 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.95 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.95 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.93 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 94.93 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.87 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.84 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.82 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.77 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.74 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.71 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.68 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.65 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.61 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.61 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.6 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.57 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.56 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.54 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.47 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.43 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.35 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.31 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.3 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.3 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.25 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 94.21 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.19 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.15 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.13 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.08 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.07 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.05 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.05 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.03 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.0 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 93.99 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 93.9 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 93.9 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 93.89 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 93.89 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 93.86 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 93.79 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 93.78 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 93.73 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 93.73 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 93.72 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 93.72 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-72 Score=763.47 Aligned_cols=214 Identities=28% Similarity=0.371 Sum_probs=177.5
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.|+|+++.++.. +..++|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 58899998876421 23469999999999999999999999999999999999887 4589999999987
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgG 1026 (1472)
.+ ..+|+.++||||++.++.. |++|||.|+..-....++.+.++++..++.++ .|+.+|..| .+||||
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgG 1221 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGG 1221 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHH
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCC-cccCHH
Confidence 54 5678899999999999864 99999977532111233556666666666443 345555443 579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+++.+.|++.|+++. +|+|||+++|+++ ....||+|+||++ |+++..|
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~G 1297 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSN-GTIIEKG 1297 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESS-SSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999875 4899999999986 4678999999975 7999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 1298 th 1299 (1321)
T 4f4c_A 1298 TH 1299 (1321)
T ss_dssp CH
T ss_pred CH
Confidence 85
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-65 Score=699.70 Aligned_cols=214 Identities=27% Similarity=0.363 Sum_probs=173.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++.. ++.++|+|||++|+|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 57889988776321 12469999999999999999999999999999999999887 4599999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgG 1026 (1472)
.. ...++.+|||+|++.++ ..||+||+.++...+...++.+.++++..++.+. .|+.+|.. +..||||
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~-G~~LSgG 1175 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK-GTQLSGG 1175 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT-SCSSCHH
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCC-CCccCHH
Confidence 43 44667899999999776 5699999987543222233445555665555433 24445543 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+|||||||||+.+++.|++.|+++ .+|+|||+++|+++. ...||++++|++ |+++..|
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~--i~~~dri~vl~~-G~i~~~g 1251 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST--IQNADLIVVIQN-GKVKEHG 1251 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG--GGSCSEEEEEET-BEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999886 458999999999874 466999999985 8999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 1252 ~~ 1253 (1284)
T 3g5u_A 1252 TH 1253 (1284)
T ss_dssp CH
T ss_pred CH
Confidence 85
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-56 Score=561.57 Aligned_cols=188 Identities=26% Similarity=0.328 Sum_probs=158.0
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+ .+.+||++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 68999999999999999999999999999999998764 4788875 23589999998877889999988
Q ss_pred HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 985 LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 985 ~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
.............++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 513 (607)
T 3bk7_A 439 SKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513 (607)
T ss_dssp HHHHHHHHHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 6531111112355788899999987777654 47999999999999999999999999999999999999999999
Q ss_pred HHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEEcCCCc
Q 045902 1065 VRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGHVIYAGPLGR 1110 (1472)
Q Consensus 1065 l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~-gg~v~~~g~~~~ 1110 (1472)
|++++ +.|.|||+++||++ .+...+|++++|++ .|+++..|++.+
T Consensus 514 l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 514 IRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 99997 45999999999976 46778999999973 266777888754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-56 Score=554.47 Aligned_cols=188 Identities=26% Similarity=0.331 Sum_probs=156.1
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.+ ...+||++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 68999999999999999999999999999999998763 4788875 23589999998877889999988
Q ss_pred HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 985 LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 985 ~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
.............++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~ 443 (538)
T 1yqt_A 369 SKIDASKLNSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 443 (538)
T ss_dssp HHHHHHHHTCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 6531111122345677778888776665553 47999999999999999999999999999999999999999999
Q ss_pred HHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEEcCCCc
Q 045902 1065 VRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGHVIYAGPLGR 1110 (1472)
Q Consensus 1065 l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~-gg~v~~~g~~~~ 1110 (1472)
|+++++ .|.|||++|||++ ++...||++++|++ .|+++..|++.+
T Consensus 444 l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 444 IRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 999974 5999999999976 46778999999974 267777888754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-54 Score=538.03 Aligned_cols=201 Identities=23% Similarity=0.266 Sum_probs=162.0
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
.|+++|++|++||++||+||||||||||+++|+|..++ .+|+|.++|. .++|++|+.......||.|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 57778999999999999999999999999999998774 5899987653 479999987777789999999
Q ss_pred HHHHHcCC-CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHH
Q 045902 985 LYSAWLRL-PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063 (1472)
Q Consensus 985 ~~~~~l~~-~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~ 1063 (1472)
.+...... .....++++++.+++.+..++.+ ..|||||||||+|||||+.+|+||+|||||+|||+.++..+++
T Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp HHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHhhhhccchhHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 87422111 22345678888888887777654 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecC-cEEEEEcCCCcchhHHHHHHHhC
Q 045902 1064 TVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GHVIYAGPLGRQSHKLVEYFEAV 1122 (1472)
Q Consensus 1064 ~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~g-g~v~~~g~~~~~~~~~~~~f~~~ 1122 (1472)
.|+++++ .|.|||++|||++ ++...||++++|+++ |.....++..........++..+
T Consensus 427 ~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 427 AIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999975 5899999999976 467789999999742 34455555433333444555443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-53 Score=548.40 Aligned_cols=184 Identities=21% Similarity=0.280 Sum_probs=148.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCC-CCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHD-LHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 264 (1472)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3333211 12468999874 67889999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccccccCccCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVGNEMRR 343 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~~~ 343 (1472)
.|++.+ ...+. . ..++.+++.+||+ +..+..+++
T Consensus 514 ~e~l~~--~~~~~------------~---------------------------~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVGT------------K---------------------------EAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSSC------------H---------------------------HHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--hhcCH------------H---------------------------HHHHHHHHHcCCChhhhcCCccc----
Confidence 999965 11100 0 0134578899995 567777765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ .|.|+|++.|+ ..++.+++|+|++|++|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECC-HHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999999999987 47888887654 567788999999999999
Q ss_pred EE-EecChhHHH
Q 045902 424 IV-YQGPREYVL 434 (1472)
Q Consensus 424 iv-~~G~~~~~~ 434 (1472)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789887653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=550.23 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=138.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCCC----ceeEEEEcCee
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLL---------------------QALSGKSDKSLR----VSGRVTYCGHE 239 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~I~~~G~~ 239 (1472)
++++|+|||+.|++||+++|+||||||||||+ +++.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 777777666521 24677787766
Q ss_pred CCCCCCCceEEEEcCCCCC-------------------CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCCh
Q 045902 240 LTEFVPQRTCAYISQHDLH-------------------HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300 (1472)
Q Consensus 240 ~~~~~~~~~~~yv~Q~d~~-------------------~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1472)
.... +++.++|++|...+ ++.+||+||+.+....... ..+.... ..
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~~---~~ 174 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQIA---RL 174 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHHH---HH
Confidence 5432 23445555554332 4578999999874221100 0000000 00
Q ss_pred hHHHHHHHHHhccccccccHHHHHHHhCCccc-ccccccCccCCCCChHHHHHHHHHHHHhCCCc--EeEEeCCCCCCCH
Q 045902 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDIC-ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK--ALFMDEISTGLDS 377 (1472)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~--illLDEptsgLDs 377 (1472)
..++. ...-.+++.+||++. .|+.+++ |||||||||+|||||+.+|+ +|+|||||+|||+
T Consensus 175 ~~~~~------------~~~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 175 ILREI------------RDRLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ----C------------HHHHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred HHHHH------------HHHHHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000 001125888999864 5777665 99999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHH
Q 045902 378 STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYV 433 (1472)
Q Consensus 378 ~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~ 433 (1472)
.++.++++.|+++++ .|.|+|++.|+.. ....+|+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCHH--HHhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999975 5889998887653 34569999999 89999999998765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=528.68 Aligned_cols=201 Identities=18% Similarity=0.187 Sum_probs=160.4
Q ss_pred eeeccceeEEeCC-----eEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 904 QLLQDVSGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 904 ~iL~~vs~~i~~G-----e~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.+++|+|+++++| |++||+||||||||||+++|+|..++ .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 78999999999999999999998774 35641 11 23579999997776678
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHH
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1058 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~ 1058 (1472)
||+|++..............+++++.+++.+..++.+ ..|||||||||+|||+|+.+|+||+|||||+|||+.++
T Consensus 429 tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 503 (608)
T 3j16_B 429 TVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQR 503 (608)
T ss_dssp BHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHH
T ss_pred cHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHH
Confidence 9999875432212223456788999999988877664 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEEcCCCcchhHHHHHHHhC
Q 045902 1059 AIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGHVIYAGPLGRQSHKLVEYFEAV 1122 (1472)
Q Consensus 1059 ~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~-gg~v~~~g~~~~~~~~~~~~f~~~ 1122 (1472)
..++++|++++ +.|.|||++|||++ ++...+||+++|++ .|+++..|++.+.-.....+...+
T Consensus 504 ~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 504 IICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 99999999986 45999999999976 47778999999974 278888888754333322343433
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=428.25 Aligned_cols=198 Identities=26% Similarity=0.415 Sum_probs=145.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHH---------hhhcCCCC-CC---eeE------EEEEEcCccCChhc----
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT-GG---YIE------GSISISGYPKKQET---- 960 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl---------~~L~g~~~-~~---~~~------G~i~i~G~~~~~~~---- 960 (1472)
..|+|||++|++|+++||+||||||||||+ +.+.+... .+ ... +.+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 33433211 11 122 34556554431100
Q ss_pred ----------------------------------------ccceeEEeccCCCCCC------------------------
Q 045902 961 ----------------------------------------FARISGYCEQNDIHSP------------------------ 976 (1472)
Q Consensus 961 ----------------------------------------~~~~~gyv~Q~~~~~~------------------------ 976 (1472)
..+..|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012367776665544
Q ss_pred --------CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC---CCcc
Q 045902 977 --------NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP---SIIF 1045 (1472)
Q Consensus 977 --------~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p---~il~ 1045 (1472)
.+||.|++.|... .+......++++.+||... ..+.+ ...|||||||||+||+||+.+| +||+
T Consensus 758 g~~i~~vl~~tv~eal~f~~~--~~~~~~~~~~L~~vGL~~~---~lgq~-~~~LSGGErQRV~LAraL~~~p~~p~LLI 831 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN--IPSIKRTLQVLHDVGLGYV---KLGQP-ATTLSGGEAQRIKLASELRKRDTGRTLYI 831 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT--CHHHHHHHHHHHHTTGGGS---BTTCC-STTCCHHHHHHHHHHHHHTSCCCSSEEEE
T ss_pred cCCHHHHhhCCHHHHHHHHhc--chhHHHHHHHHHHcCCchh---hccCC-ccCCCHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 3688888877432 1222445667777777543 22332 3579999999999999999876 6999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCCC
Q 045902 1046 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPLG 1109 (1472)
Q Consensus 1046 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~~ 1109 (1472)
|||||+|||+.+...+++.|++++++|.|||+++|+++ +...+|++++|. +||++++.|+..
T Consensus 832 LDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 832 LDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 99999999999999999999999988999999999964 567799999993 479999999863
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=386.28 Aligned_cols=207 Identities=25% Similarity=0.331 Sum_probs=180.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC------CceEEEEcCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP------QRTCAYISQHDLH 258 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 258 (1472)
.+++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 457999999999999999999999999999999999999998 9999999999876543 3579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.|+.+..+... .+ . ...++.+++.+||++.+|..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------~~----------~--------------~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------DE----------V--------------KRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------HH----------H--------------HHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------HH----------H--------------HHHHHHHHHHcCCchHhcCChh
Confidence 999999999999765433210 00 0 0124668999999988887765
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+..|.|+|++.|+ ..++.++||+|++
T Consensus 163 ~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~v 236 (366)
T 3tui_C 163 N-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAV 236 (366)
T ss_dssp T-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEEE
Confidence 4 999999999999999999999999999999999999999999999987778999988765 4578889999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998874
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=417.29 Aligned_cols=195 Identities=28% Similarity=0.402 Sum_probs=147.9
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhc-C----C-----CCCC---eeEE------EEEEcCccCChhc-----
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA-G----R-----KTGG---YIEG------SISISGYPKKQET----- 960 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g----~-----~~~~---~~~G------~i~i~G~~~~~~~----- 960 (1472)
.|+|||++|++||++||+|+||||||||+++|+ | . ..++ .+.| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999964 2 1 1122 2344 5889987752100
Q ss_pred -----------------ccceeEEeccCCCCC----------------------C-------------------------
Q 045902 961 -----------------FARISGYCEQNDIHS----------------------P------------------------- 976 (1472)
Q Consensus 961 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 976 (1472)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 023457887753221 1
Q ss_pred -------CCCHHHHHHHHHHcCCCchHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCC---CCcc
Q 045902 977 -------NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLTIAVELVANP---SIIF 1045 (1472)
Q Consensus 977 -------~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p---~il~ 1045 (1472)
.+|+.|++.|... .+......++++.++|.. ..+.. +..|||||||||+||++|+.+| +||+
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~--~~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLI 871 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS--IPKIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYI 871 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS--CHHHHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEE
T ss_pred CCHHHhhhcCHHHHHHHHhc--chhHHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4678888876322 122233467788888765 33433 3579999999999999999875 9999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 045902 1046 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPL 1108 (1472)
Q Consensus 1046 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~ 1108 (1472)
|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 872 LDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 99999999999999999999999988999999999965 457899999994 46889988875
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=386.84 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=182.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+... .+...+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 47888888766321 1235799999999999999999999999999999999998874 599999999986
Q ss_pred Ch---h---cccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 957 KQ---E---TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~---~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
.. . ..++.+||++|++.+++.+||+||+.|....+. +.+ +.++++++.++|.+..++.. ..||||
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 167 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGG 167 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHH
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHH
Confidence 43 1 235679999999999999999999999876543 222 45778888888887766653 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+|||||+.+|++|+|||||||||+.++..++++|+++.++ |.|||++||+++ .+.+.||++++|++ |++++.
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~ 245 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQ 245 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999754 999999999976 46778999999985 799999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 246 g~~~ 249 (366)
T 3tui_C 246 DTVS 249 (366)
T ss_dssp CBHH
T ss_pred cCHH
Confidence 9863
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=369.39 Aligned_cols=209 Identities=26% Similarity=0.376 Sum_probs=177.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 25 l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESS
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 6788887664 235799999999999999999999999999999999998874 5899999998763
Q ss_pred --h---hcccceeEEeccCCCCCCCCCHHHHHHHHH-HcC-CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHH
Q 045902 958 --Q---ETFARISGYCEQNDIHSPNVTIYESLLYSA-WLR-LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 958 --~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~l~-~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq 1027 (1472)
. ..+++.+||++|++.+++.+||+||+.+.. ... .+. .+.++++++.+++.+..++.. ..|||||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 164 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQ 164 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 1 224567999999999999999999999864 332 222 235678888898887766653 4799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 165 kQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 242 (263)
T 2olj_A 165 AQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGK 242 (263)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999975 46678999999985 78988887
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 243 ~ 243 (263)
T 2olj_A 243 P 243 (263)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=364.67 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=172.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++.. .....+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 4567777665311 1124699999999999999999999999999999999998874 5999999998764
Q ss_pred hh---c----ccceeEEeccCCCCCCCCCHHHHHHHHHHcC----CCch---HHHHHHHHHcccccc-cccccCCCCCCC
Q 045902 958 QE---T----FARISGYCEQNDIHSPNVTIYESLLYSAWLR----LPKD---MFVEEVMELVEMKAL-RNSLVGLPGVDG 1022 (1472)
Q Consensus 958 ~~---~----~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~----~~~~---~~~~~v~~~l~l~~~-~~~~~~~~~~~~ 1022 (1472)
.. . .++.+||++|++.+++.+||+||+.+....+ .+.+ +.+.++++.+++.+. .+.. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 21 1 1345999999999999999999999876543 1222 234556666666543 2333 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGH 1101 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~ 1101 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4588999999985 78
Q ss_pred EEEEcCCC
Q 045902 1102 VIYAGPLG 1109 (1472)
Q Consensus 1102 v~~~g~~~ 1109 (1472)
++..++..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 98888764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=373.25 Aligned_cols=212 Identities=25% Similarity=0.395 Sum_probs=179.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+. ++..+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 477888877652 124599999999999999999999999999999999998874 599999999987
Q ss_pred C--h---hcccceeEEeccCCC-CCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 957 K--Q---ETFARISGYCEQNDI-HSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~--~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
. . ..+++.+||++|++. .+..+||+||+.|...... +.+ +.++++++.+++.++.+... ..||||
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG 147 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFG 147 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHH
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHH
Confidence 3 2 234577999999863 4457999999999876542 222 45778899999988777654 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~ 225 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQ 225 (275)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999997 56999999999987 36678999999985 799999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 226 g~~~ 229 (275)
T 3gfo_A 226 GNPK 229 (275)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=384.40 Aligned_cols=210 Identities=25% Similarity=0.361 Sum_probs=182.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ ++..+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECC
Confidence 5667776654 346799999999999999999999999999999999999874 5999999999864
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...++.+|||+|+..++|.+||+||+.|....+. +.+ +.++++++.+++.++.++.. ..|||||||||+
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVa 143 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVA 143 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHH
Confidence 3 2335679999999999999999999999876653 222 45778899999988777654 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||||||+..+..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+..
T Consensus 144 iArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999999999999999999999999765 999999999976 57889999999985 7999999863
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=369.75 Aligned_cols=209 Identities=22% Similarity=0.283 Sum_probs=177.5
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 7 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 6777877654 235799999999999999999999999999999999998874 5899999998764
Q ss_pred h----------------hcccceeEEeccCCCCCCCCCHHHHHHHHH-HcC-CCc---hHHHHHHHHHcccccc-ccccc
Q 045902 958 Q----------------ETFARISGYCEQNDIHSPNVTIYESLLYSA-WLR-LPK---DMFVEEVMELVEMKAL-RNSLV 1015 (1472)
Q Consensus 958 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~-~l~-~~~---~~~~~~v~~~l~l~~~-~~~~~ 1015 (1472)
. ..+++.+||++|++.+++.+||+||+.+.. ..+ .+. ...++++++.+++.+. .++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 151 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP 151 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc
Confidence 1 123567999999999999999999999864 332 222 2356788888988877 66553
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE
Q 045902 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1016 ~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++
T Consensus 152 -----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (262)
T 1b0u_A 152 -----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIF 225 (262)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEE
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999976 46678999999
Q ss_pred EecCcEEEEEcCC
Q 045902 1096 MKRGGHVIYAGPL 1108 (1472)
Q Consensus 1096 l~~gg~v~~~g~~ 1108 (1472)
|++ |+++..|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 226 LHQ-GKIEEEGDP 237 (262)
T ss_dssp EET-TEEEEEECH
T ss_pred EEC-CEEEEeCCH
Confidence 985 789888875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=383.57 Aligned_cols=210 Identities=27% Similarity=0.426 Sum_probs=180.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC-
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK- 956 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~- 956 (1472)
+.++|+++.+ ++..+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 5 l~i~~ls~~y-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 5 LHIGHLSKSF-------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIF 69 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 5677776654 346799999999999999999999999999999999998874 599999999875
Q ss_pred ---Ch-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHH
Q 045902 957 ---KQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ---~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. ...++.+|||+|+..++|.+||+||+.|....+. +.+ +.++++++.++|.++.++.. ..||||||
T Consensus 70 ~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 144 (359)
T 3fvq_A 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQ 144 (359)
T ss_dssp SSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHH
T ss_pred ccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHH
Confidence 21 2345779999999999999999999999765432 222 45788899999988877664 47999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
|||+|||||+.+|++|+|||||||||+..+..+++.|+++. +.|.|||++|||.+ ++...+||+++|++ |+++..|+
T Consensus 145 QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 222 (359)
T 3fvq_A 145 QRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTAS 222 (359)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeC
Confidence 99999999999999999999999999999999999888775 56999999999976 57789999999985 79999998
Q ss_pred CC
Q 045902 1108 LG 1109 (1472)
Q Consensus 1108 ~~ 1109 (1472)
+.
T Consensus 223 ~~ 224 (359)
T 3fvq_A 223 PH 224 (359)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=360.36 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=175.6
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~y-------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVI-------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEeEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6677777654 235799999999999999999999999999999999998874 5899999998864
Q ss_pred hh------ccc-ceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cc---hHHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 958 QE------TFA-RISGYCEQNDIHSPNVTIYESLLYSAWLRL-PK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~~------~~~-~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
.. .++ +.+||++|++.+++.+||+||+.+....+. +. .+.++++++.+++.+..+... ..||||
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 144 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGG 144 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHH
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHH
Confidence 21 122 569999999999999999999998765432 21 235678888888887766654 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ..+.||++++|++ |++++.|
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i~~~g 221 (224)
T 2pcj_A 145 EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKVVGEI 221 (224)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEe
Confidence 999999999999999999999999999999999999999999877999999999965 3488999999985 7898887
Q ss_pred C
Q 045902 1107 P 1107 (1472)
Q Consensus 1107 ~ 1107 (1472)
+
T Consensus 222 ~ 222 (224)
T 2pcj_A 222 T 222 (224)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=361.22 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=172.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC-------ceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-------RTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q~d~~ 258 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....+ +.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999998 99999999998765432 359999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccc-ccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC-ADIMV 337 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~v 337 (1472)
++.+||+||+.++......+.. .+.+. ...+..+++.+||.+. .|..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SGEER------------------------RKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CHHHH------------------------HHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CHHHH------------------------HHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999987543211000 00000 0113457889999875 36665
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
+ .|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++++..|.|+|++.|++. ..+++|+|+
T Consensus 144 ~-----~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 144 N-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp G-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 5 499999999999999999999999999999999999999999999998766899999988764 458999999
Q ss_pred EecCCeEEEecChhHH
Q 045902 418 LLSEGEIVYQGPREYV 433 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~ 433 (1472)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=365.99 Aligned_cols=209 Identities=22% Similarity=0.331 Sum_probs=178.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 16 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 16 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 80 (256)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6677777654 235799999999999999999999999999999999998774 5899999998864
Q ss_pred h--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 958 Q--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 958 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
. ...++.+||++|++.+++.+||+||+.+..... .+.+ +.++++++.+++.+..++.+ ..|||||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv 155 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKL 155 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHH
Confidence 3 234567999999999999999999999865432 2222 35678889999988777654 47999999999
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999999999999999999877999999999975 35567999999985 788888875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=412.95 Aligned_cols=195 Identities=25% Similarity=0.361 Sum_probs=142.8
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhh-hcCCC-------CC----------------CeeEE-------EEEEcC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDV-LAGRK-------TG----------------GYIEG-------SISISG 953 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~G 953 (1472)
.|+|||++|++||++||+|+||||||||++. |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999997 76421 11 12467 789999
Q ss_pred ccCChhc-------------c---------cceeEEeccC----------------------CCCCC-------------
Q 045902 954 YPKKQET-------------F---------ARISGYCEQN----------------------DIHSP------------- 976 (1472)
Q Consensus 954 ~~~~~~~-------------~---------~~~~gyv~Q~----------------------~~~~~------------- 976 (1472)
.++.... . .|..||.++. ..+.+
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 8753110 0 1112332221 11111
Q ss_pred -------------------CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-cccccCCCCCCCCCHHHHHHHHHHHH
Q 045902 977 -------------------NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-RNSLVGLPGVDGLSTEQRKRLTIAVE 1036 (1472)
Q Consensus 977 -------------------~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-~~~~~~~~~~~~LSgGqrqRl~iA~a 1036 (1472)
.+|+.|++.|... .+....+.++++.+++... .++. +..|||||||||.||++
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~--~~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAra 744 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFAD--ESAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATE 744 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT--SHHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHT
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhhc--chHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHH
Confidence 2455555544211 1112346677888887653 2332 35799999999999999
Q ss_pred HhhC---CCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 045902 1037 LVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGHVIYAGPL 1108 (1472)
Q Consensus 1037 L~~~---p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~-----~gg~v~~~g~~ 1108 (1472)
|+.+ |+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 745 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 745 LRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred HHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9996 6999999999999999999999999999988999999999965 448899999994 46889998875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=378.43 Aligned_cols=207 Identities=22% Similarity=0.332 Sum_probs=178.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC----CCCCC-CceEEEEcCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL----TEFVP-QRTCAYISQHDLHHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~----~~~~~-~~~~~yv~Q~d~~~~ 260 (1472)
+++|+|||+.+++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++ ....+ ++.+|||+|+..++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999998 99999999988 33222 367999999999999
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.+||+||+.|+.+..+... .+. ...++.+++.+||++.+|..+++
T Consensus 94 ~ltV~eni~~~l~~~~~~~--------------------~~~--------------~~~v~~~l~~~gL~~~~~r~~~~- 138 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT--------------------AQE--------------RQRIEAMLELTGISELAGRYPHE- 138 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS--------------------HHH--------------HHHHHHHHHHHTCGGGTTSCGGG-
T ss_pred CCCHHHHHHHHHHHcCCCh--------------------HHH--------------HHHHHHHHHHcCCchHhcCChhh-
Confidence 9999999999865433211 000 01246689999999988877765
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..|.|+|++.|+ ..++..++|+|++|+
T Consensus 139 ----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd-~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 139 ----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD-REEALQYADRIAVMK 213 (359)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC-HHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHCCEEEEEE
Confidence 999999999999999999999999999999999999999999988877678898887664 568889999999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999988743
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=368.26 Aligned_cols=211 Identities=23% Similarity=0.313 Sum_probs=179.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++++|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 46788887664 235799999999999999999999999999999999998874 589999999886
Q ss_pred Ch----hcccceeEEeccCCCCCCCCCHHHHHHHHHHc-C-------------CCch---HHHHHHHHHccccccccccc
Q 045902 957 KQ----ETFARISGYCEQNDIHSPNVTIYESLLYSAWL-R-------------LPKD---MFVEEVMELVEMKALRNSLV 1015 (1472)
Q Consensus 957 ~~----~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l-~-------------~~~~---~~~~~v~~~l~l~~~~~~~~ 1015 (1472)
.. ...++.+||++|++.+++.+||+||+.+.... + .+.. ..++++++.+++.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 43 12345699999999989999999999886533 1 1221 35678889999887777654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE
Q 045902 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1016 ~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999987 46678999999
Q ss_pred EecCcEEEEEcCCC
Q 045902 1096 MKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1096 l~~gg~v~~~g~~~ 1109 (1472)
|++ |++++.|+..
T Consensus 226 l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 226 MFN-GQIIAEGRGE 238 (257)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEeCHH
Confidence 985 7888888763
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=362.12 Aligned_cols=210 Identities=21% Similarity=0.354 Sum_probs=175.8
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 36778887654 235799999999999999999999999999999999998774 589999999886
Q ss_pred Ch---hc-ccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch---HHHHHHHHHcc-cccccccccCCCCCCCCCHHHH
Q 045902 957 KQ---ET-FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD---MFVEEVMELVE-MKALRNSLVGLPGVDGLSTEQR 1028 (1472)
Q Consensus 957 ~~---~~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~---~~~~~v~~~l~-l~~~~~~~~~~~~~~~LSgGqr 1028 (1472)
.. .. .++.+||++|++.+++.+||+||+.+......+.+ +.++++++.++ +.+..++.. ..||||||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~ 145 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQ 145 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHH
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHH
Confidence 43 11 23459999999999999999999988642222222 34667788884 877666543 47999999
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 146 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 223 (240)
T 1ji0_A 146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA 223 (240)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999999999999999999999877999999999975 46788999999985 788888875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=367.87 Aligned_cols=211 Identities=25% Similarity=0.339 Sum_probs=181.2
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 46778887765 346799999999999999999999999999999999998774 489999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
.. ...++.++|++|++.+++.+||+||+.+....... ..+.++++++.+++.++.++.. ..|||||||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv 150 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRV 150 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHH
Confidence 43 33456789999999988899999999987544321 2356788999999988877664 47999999999
Q ss_pred HHHHHHhh------CCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1032 TIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1032 ~iA~aL~~------~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
+|||||+. +|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~ 228 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVA 228 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999 99999999999999999999999999999765 579999999976 46678999999985 79999
Q ss_pred EcCCC
Q 045902 1105 AGPLG 1109 (1472)
Q Consensus 1105 ~g~~~ 1109 (1472)
.|+..
T Consensus 229 ~g~~~ 233 (266)
T 4g1u_C 229 CGTPE 233 (266)
T ss_dssp EECHH
T ss_pred EcCHH
Confidence 99864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=379.48 Aligned_cols=207 Identities=23% Similarity=0.347 Sum_probs=181.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
..+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999987655 3679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+ . ...++.+++.+||++..|..+.+
T Consensus 93 ~eni~~~~~~~~~~----------~~~----------~--------------~~~v~~~l~~~~L~~~~~r~p~~----- 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAK----------KEV----------I--------------NQRVNQVAEVLQLAHLLDRKPKA----- 133 (381)
T ss_dssp HHHHTHHHHHTTCC----------HHH----------H--------------HHHHHHHHHHTTCGGGTTCCGGG-----
T ss_pred HHHHHHHHHHcCCC----------HHH----------H--------------HHHHHHHHHHcCCchhhcCChhH-----
Confidence 99999986543321 000 0 01246689999999988877765
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.+..|.|+|++.| ...++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998767889888765 45688899999999999999
Q ss_pred EEecChhHHHH
Q 045902 425 VYQGPREYVLD 435 (1472)
Q Consensus 425 v~~G~~~~~~~ 435 (1472)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998743
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=362.71 Aligned_cols=206 Identities=26% Similarity=0.339 Sum_probs=173.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----CCceEEEEcCCC-CCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----PQRTCAYISQHD-LHHG 260 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d-~~~~ 260 (1472)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++ ..++
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999997 999999999984211 135799999996 3455
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
.+||+||+.|+....+... .+ . ...++.+++.+||++..|..+++
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~~L~~~~~~~~~~- 143 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------DE----------I--------------RKRVDNALKRTGIEHLKDKPTHC- 143 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------HH----------H--------------HHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred cCcHHHHHHHHHHHcCCCH----------HH----------H--------------HHHHHHHHHHcCCchhhcCCccc-
Confidence 7999999999765432110 00 0 01245688999999988877765
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..|.|+|++.|+. .++.+++|+|++|+
T Consensus 144 ----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 144 ----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMK 218 (275)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999733488999888765 47778999999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999988753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=361.28 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=176.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999997 8999999999876543 25699999999998899
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++....... +. ...++.+++.+||.+..|..+++
T Consensus 101 tv~e~l~~~~~~~~~~----------------------~~--------------~~~~~~~l~~~~l~~~~~~~~~~--- 141 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGS----------------------QD--------------RQALQQVMAQTDCLALAQRDYRV--- 141 (266)
T ss_dssp BHHHHHHGGGTTSCST----------------------TH--------------HHHHHHHHHHTTCSTTTTSBGGG---
T ss_pred CHHHHHHhhhhhcCcH----------------------HH--------------HHHHHHHHHHcCChhHhcCCccc---
Confidence 9999999875422100 00 01235678999999888877764
Q ss_pred CCCChHHHHHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 343 RGISGGQKKRVTTGEMLVG------PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
|||||||||+|||||+. +|++|+|||||+|||+.++.++++.|+++++..+.|+|++.|+ ..++.+++|+|
T Consensus 142 --LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd-l~~~~~~~d~v 218 (266)
T 4g1u_C 142 --LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD-LNLAALYADRI 218 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC-HHHHHHHCSEE
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC-HHHHHHhCCEE
Confidence 99999999999999999 9999999999999999999999999999987666788887654 55778899999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998863
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=376.78 Aligned_cols=212 Identities=25% Similarity=0.406 Sum_probs=181.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ +++.+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 467777765431 235699999999999999999999999999999999999874 599999999886
Q ss_pred Ch-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 957 KQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 957 ~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
.. ...++.+|||+|+..++|.+||+||+.|....+. +.+ +.++++++.+++.++.++.. ..|||||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRv 154 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRV 154 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHH
Confidence 43 2345779999999999999999999999866542 322 45778899999988877654 47999999999
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 231 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTPE 231 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999999999999999765 999999999976 57788999999985 7899988763
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=376.22 Aligned_cols=210 Identities=24% Similarity=0.354 Sum_probs=179.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 5667776554 345799999999999999999999999999999999998874 5899999998864
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC-c---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP-K---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~-~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...++.+|||+|+..+++++||+||+.|....+.. . ++.++++++.+++.++.++.. ..|||||||||+
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRva 143 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVA 143 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHH
Confidence 3 22356799999999999999999999987654321 1 246788999999988877654 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 144 LARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999999755 999999999975 57788999999985 7899988763
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=376.10 Aligned_cols=210 Identities=26% Similarity=0.393 Sum_probs=179.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5566766543 345799999999999999999999999999999999998874 5899999998864
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...++.+|||+|+..++|++||+||+.|....+. +.+ +.++++++.+++.++.++.. ..|||||||||+
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRva 143 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVA 143 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHH
Confidence 3 2234679999999999999999999999865542 322 45778899999988777654 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 144 IARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp HHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999999999999755 999999999975 57788999999985 7899888753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=376.41 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=180.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 5667776554 23579999999999999999999999999999999999987 45999999998753
Q ss_pred h-------hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 958 Q-------ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~-------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
. ...++.+|||+|+..++|++||+||+.|....+. +.+ +.++++++.+++.++.++.. ..||||
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGG 143 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----RELSGG 143 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHH
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHH
Confidence 2 1235679999999999999999999999876542 322 45778899999988777654 479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..
T Consensus 144 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~ 221 (372)
T 1g29_1 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQV 221 (372)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 999999999999999999999999999999999999999999765 999999999976 57788999999985 789998
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 222 g~~~ 225 (372)
T 1g29_1 222 GSPD 225 (372)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8763
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=372.56 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=179.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+ ....++.+++.+||++..|..+++
T Consensus 93 ~eni~~~~~~~~~~----------~~~------------------------~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KDE------------------------VEKRVVEIARKLLIDNLLDRKPTQ----- 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HHH------------------------TTHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCchHhcCChhh-----
Confidence 99999976543210 000 011246689999999988877765
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977668898888765 4578889999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 213 ~~~g~~~~l~ 222 (359)
T 2yyz_A 213 VQYGTPDEVY 222 (359)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=352.09 Aligned_cols=200 Identities=25% Similarity=0.321 Sum_probs=171.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999999876432 1469999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
++.+||+||+.++....+.. +.+. ...++.+++.+||++..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------KKEA------------------------KERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HHHH------------------------HHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------HHHH------------------------HHHHHHHHHHcCCchhhhCChh
Confidence 99999999999865432210 0000 0123567899999988887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|++. .+ +++|++++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERE-LA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HH-HhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999999775 889999887743 44 89999999
Q ss_pred ecCCeEEEecCh
Q 045902 419 LSEGEIVYQGPR 430 (1472)
Q Consensus 419 L~~G~iv~~G~~ 430 (1472)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=371.90 Aligned_cols=206 Identities=27% Similarity=0.396 Sum_probs=178.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+. ...++.+++.+||++.+|..+++
T Consensus 105 ~eni~~~l~~~~~~----------~~~~------------------------~~~v~~~l~~~gL~~~~~r~~~~----- 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------KDEM------------------------DARVRELLRFMRLESYANRFPHE----- 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------HHHH------------------------HHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHHcCCC----------HHHH------------------------HHHHHHHHHHcCChhHhcCCccc-----
Confidence 99999976543211 0000 01246689999999988877764
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977668898887765 5678899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=372.19 Aligned_cols=206 Identities=27% Similarity=0.390 Sum_probs=179.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 3679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+ . ...++.+++.+||++..|..+++
T Consensus 93 ~eni~~~~~~~~~~----------~~~----------~--------------~~~v~~~l~~~~L~~~~~r~~~~----- 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------REE----------I--------------DKKVREVAKMLHIDKLLNRYPWQ----- 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------HHH----------H--------------HHHHHHHHHHTTCTTCTTCCGGG-----
T ss_pred HHHHHHHHHhcCCC----------HHH----------H--------------HHHHHHHHHHcCCchHhhCChhh-----
Confidence 99999976543211 000 0 01246689999999988877764
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977668898888765 4578899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=374.35 Aligned_cols=198 Identities=22% Similarity=0.303 Sum_probs=173.6
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
++ +|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+|||+|+..+++.+||
T Consensus 13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCH
T ss_pred CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCH
Confidence 35 99999999999999999999999999999999999874 59999999988643 2335679999999999999999
Q ss_pred HHHHHHHHHcC-CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 981 YESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 981 ~e~l~~~~~l~-~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
+||+.|....+ .+.+..++++++.+++.++.++.. ..|||||||||+|||||+.+|++|+|||||||||+.++.
T Consensus 90 ~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~ 164 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHH
Confidence 99999976543 233367888999999988877664 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1060 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1060 ~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
.+++.|+++.+ .|.|||++||+++ ++...+|++++|++ |+++..|+..
T Consensus 165 ~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 165 NAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999975 4999999999975 57788999999985 7888888753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=376.30 Aligned_cols=210 Identities=27% Similarity=0.394 Sum_probs=179.3
Q ss_pred EEEeceeeEEeccchhhccccccccce--eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQ--LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
+.++|+++.+ +++. +|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 4 l~i~~l~~~y-------------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVF-------------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEE-------------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 5667776554 2345 99999999999999999999999999999999998874 58999999987
Q ss_pred CCh------hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 956 KKQ------ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
... ...++.+|||+|+..+++.+||+||+.|....+. +.+ +.++++++.+++.++.++.. ..|||
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSG 143 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSG 143 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCH
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCH
Confidence 532 2345779999999999999999999998765432 222 45778899999988877654 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++.
T Consensus 144 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~ 221 (353)
T 1oxx_K 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQ 221 (353)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999754 999999999976 57788999999985 78998
Q ss_pred EcCCC
Q 045902 1105 AGPLG 1109 (1472)
Q Consensus 1105 ~g~~~ 1109 (1472)
.|+..
T Consensus 222 ~g~~~ 226 (353)
T 1oxx_K 222 VGKPE 226 (353)
T ss_dssp EECHH
T ss_pred EcCHH
Confidence 88763
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=356.42 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=173.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCC--CCC---CCceEEEEcCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT--EFV---PQRTCAYISQHDLHHG 260 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 260 (1472)
+++|+|||+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 36999999999999999999999999999999999999987 999999999885 111 1346999999999999
Q ss_pred CCCHHHHHHHhh-hccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 261 EMTVRETLDFSG-RCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 261 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
.+||+||+.|+. +..+.. +.+. ...++.+++.+||++..|..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------REKA------------------------EAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------HHHH------------------------HHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCC----------HHHH------------------------HHHHHHHHHHCCCchHhcCChhh
Confidence 999999999853 222110 0000 01235678999999888877765
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|+ ..++.+++|+|++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765 8898888765 45677899999999
Q ss_pred cCCeEEEecChhHHH
Q 045902 420 SEGEIVYQGPREYVL 434 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~~ 434 (1472)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=375.77 Aligned_cols=210 Identities=24% Similarity=0.382 Sum_probs=173.5
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ +++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|++..
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 6777877654 23579999999999999999999999999999999999887 45999999998864
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-CCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...+|.+|||+|+..+++++||+||+.|....+ .+.+ ..++++++.+++.++.++.. ..|||||||||+
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRva 151 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVA 151 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHH
Confidence 3 223567999999999999999999999875443 2222 35778899999988777653 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 152 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 227 (372)
T 1v43_A 152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 227 (372)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999999765 999999999975 57788999999985 7899888763
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=370.27 Aligned_cols=201 Identities=25% Similarity=0.369 Sum_probs=176.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+|+|+|+.+++||+++|+||||||||||||+|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 899999999999999999999999999999999999998 9999999999876443 367999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.|+.+..+.. .. ..++.+++.+||++..|..+++ ||
T Consensus 92 nl~~~~~~~~~~--------------------~~-----------------~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIK--------------------DP-----------------KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCC--------------------CH-----------------HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCC--------------------HH-----------------HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 999975432110 00 1245688999999988877764 99
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987678898888765 457889999999999999999
Q ss_pred ecChhHHH
Q 045902 427 QGPREYVL 434 (1472)
Q Consensus 427 ~G~~~~~~ 434 (1472)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=355.70 Aligned_cols=194 Identities=23% Similarity=0.357 Sum_probs=166.6
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
+|+|||+++++ |++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 99999999999999999999998774 58999999988643 2335678999999999999999999
Q ss_pred HHHHHHcCCC--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 984 LLYSAWLRLP--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 984 l~~~~~l~~~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
+.+....+.. ..+.++++++.+++.+..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.++..+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~ 165 (240)
T 2onk_A 91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL 165 (240)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 9886433211 1245678888888887766654 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1062 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1062 ~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 166 ~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 166 MEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999754 999999999975 46778999999985 789888874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=359.29 Aligned_cols=197 Identities=24% Similarity=0.385 Sum_probs=169.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCC-CCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQND-IHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~-~~~~~lTv~ 981 (1472)
+.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.....+++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 4699999999999999999999999999999999998774 5899999998875434556799999995 566789999
Q ss_pred HHHHHHHHcCCC---chHHHHHHHHHcccc--cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 982 ESLLYSAWLRLP---KDMFVEEVMELVEMK--ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 982 e~l~~~~~l~~~---~~~~~~~v~~~l~l~--~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
||+.+......+ ..+.++++++.+++. +..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 172 (266)
T 2yz2_A 98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172 (266)
T ss_dssp HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHH
Confidence 999986432111 135678899999987 7766654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..|+.
T Consensus 173 ~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 173 GKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999877999999999987 35667999999985 788888864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=371.78 Aligned_cols=206 Identities=26% Similarity=0.361 Sum_probs=178.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC------CCC-CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE------FVP-QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 258 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999998 9999999998754 333 4679999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+|.+||+||+.|+.+..+.. +.+. ...++.+++.+||++..|..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------~~~~------------------------~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------RQEI------------------------DQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HHHH------------------------HHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCC----------HHHH------------------------HHHHHHHHHHCCCchHhcCCcc
Confidence 99999999999976543211 0000 0124568899999998887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++
T Consensus 139 ~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~v 212 (372)
T 1g29_1 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAV 212 (372)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEE
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEE
Confidence 5 999999999999999999999999999999999999999999999977668898888765 4578899999999
Q ss_pred ecCCeEEEecChhHHH
Q 045902 419 LSEGEIVYQGPREYVL 434 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~ 434 (1472)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999998874
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=358.21 Aligned_cols=205 Identities=24% Similarity=0.319 Sum_probs=173.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC----------CC------CCceE
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE----------FV------PQRTC 249 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----------~~------~~~~~ 249 (1472)
+++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999987 9999999998851 11 13569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhh-hccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhC
Q 045902 250 AYISQHDLHHGEMTVRETLDFSG-RCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG 328 (1472)
Q Consensus 250 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 328 (1472)
+||+|++.+++.+||+||+.|+. +..+.. +.+. ...++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KHDA------------------------RERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HHHH------------------------HHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------HHHH------------------------HHHHHHHHHHcC
Confidence 99999999999999999999853 222110 0000 012456789999
Q ss_pred Cccc-ccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc
Q 045902 329 LDIC-ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407 (1472)
Q Consensus 329 L~~~-~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 407 (1472)
|++. ++..+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|++.|+ ..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HH
Confidence 9988 8877765 9999999999999999999999999999999999999999999999764 8888888765 45
Q ss_pred hHHhccCeEEEecCCeEEEecChhHHH
Q 045902 408 ETYDLFDDIILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 408 ~~~~~fD~iilL~~G~iv~~G~~~~~~ 434 (1472)
++.+++|+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 777899999999999999999998774
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=371.72 Aligned_cols=206 Identities=23% Similarity=0.362 Sum_probs=172.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|+.+..+.. +.+. ...++.+++.+||++.+|..+++
T Consensus 101 ~eni~~~~~~~~~~----------~~~~------------------------~~~v~~~l~~~~L~~~~~r~~~~----- 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------KDEI------------------------DKRVRWAAELLQIEELLNRYPAQ----- 141 (372)
T ss_dssp HHHHHTTCC--CCC----------HHHH------------------------HHHHHHHHHHTTCGGGTTSCTTT-----
T ss_pred HHHHHHHHHhcCCC----------HHHH------------------------HHHHHHHHHHcCChhHhcCChhh-----
Confidence 99999975433211 0000 01246689999999988877654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977668898888765 4578899999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=363.74 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=167.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999998 9999999999987653 357999999998884 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+|||.|+..... ++++.+..+.+.+ ...++. ++...||.+| +.+
T Consensus 143 Tv~eNi~~~~~~~~----------------------~~~~~~~~~~~~l---------~~~i~~--lp~gl~t~~~-~~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----------------------NDEVEAAAQAAGI---------HDAIMA--FPEGYRTQVG-ERG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----------------------HHHHHHHHHHHTC---------HHHHHH--STTGGGCEES-TTS
T ss_pred cHHHHHHhhcccCC----------------------HHHHHHHHHHhCc---------HHHHHh--ccchhhhHhc-CCc
Confidence 99999998643111 0011111111111 111222 3345577777 566
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|+||+|||||+|||+.++..|.+.|+++.+ ++|+|++.|... .+ ..+|+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~-~~-~~aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLS-TV-VNADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHH-HH-HTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChH-HH-HcCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999864 678888776543 44 449999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
++++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=365.92 Aligned_cols=215 Identities=23% Similarity=0.383 Sum_probs=175.7
Q ss_pred ccceEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEc
Q 045902 873 FQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS 952 (1472)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~ 952 (1472)
..+..+.++|+++.+ +++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++
T Consensus 17 ~~~~~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~ 81 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLF 81 (279)
T ss_dssp --CEEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEET
T ss_pred CCCceEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEEC
Confidence 334468888887765 235799999999999999999999999999999999998874 58999999
Q ss_pred CccCC--h---hcccceeEEeccCCCCC--CCCCHHHHHHHHHHc-----CCCch---HHHHHHHHHcccccccccccCC
Q 045902 953 GYPKK--Q---ETFARISGYCEQNDIHS--PNVTIYESLLYSAWL-----RLPKD---MFVEEVMELVEMKALRNSLVGL 1017 (1472)
Q Consensus 953 G~~~~--~---~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~l-----~~~~~---~~~~~v~~~l~l~~~~~~~~~~ 1017 (1472)
|.+.. . ..+++.+||++|++.+. +.+||+||+.+.... ..+.+ +.++++++.+++.+..++.+
T Consensus 82 g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 159 (279)
T 2ihy_A 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-- 159 (279)
T ss_dssp TBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG--
T ss_pred CEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh--
Confidence 98764 2 23456799999987543 457999999875311 11122 35677888888887776654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEE--EEEecCccHHHHHhhCeEEE
Q 045902 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1018 ~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tv--i~t~H~~~~~~~~~~D~v~~ 1095 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|| |++||+++ ++.+.||++++
T Consensus 160 ---~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~ 235 (279)
T 2ihy_A 160 ---GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILL 235 (279)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEE
Confidence 4799999999999999999999999999999999999999999999997669999 99999976 35678999999
Q ss_pred EecCcEEEEEcCCC
Q 045902 1096 MKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1096 l~~gg~v~~~g~~~ 1109 (1472)
|++ |++++.|+..
T Consensus 236 l~~-G~i~~~g~~~ 248 (279)
T 2ihy_A 236 LKD-GQSIQQGAVE 248 (279)
T ss_dssp EET-TEEEEEEEHH
T ss_pred EEC-CEEEEECCHH
Confidence 985 7898888753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=356.13 Aligned_cols=215 Identities=27% Similarity=0.352 Sum_probs=174.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|||+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999987 9999999999865432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCC-CCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGI-KPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
+||+||+.++......+. ...... ... .+..+. ...++.+++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~- 153 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP-LNSLFY-------KKWIPKEEEM--------------VEKAFKILEFLKLSHLYDRKAGE- 153 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH-HHHHHH-------CSSCCCCHHH--------------HHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CcHHHHHHHHHhhhccCc-cccccc-------ccccCCHHHH--------------HHHHHHHHHHcCCchhhCCCchh-
Confidence 999999998643200000 000000 000 000000 01245688999999888877765
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. |.|+|++.|+. .++.+++|+|++|+
T Consensus 154 ----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 154 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVMF 227 (257)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999764 88998887765 46778999999999
Q ss_pred CCeEEEecChhH
Q 045902 421 EGEIVYQGPREY 432 (1472)
Q Consensus 421 ~G~iv~~G~~~~ 432 (1472)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 NGQIIAEGRGEE 239 (257)
T ss_dssp TTEEEEEEESHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999887
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=370.34 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=177.1
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC-----CCC-CceEEEEcCCCCCCCC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE-----FVP-QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~-~~~~~yv~Q~d~~~~~ 261 (1472)
+|+|+|+.+++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..+ ++.++||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999998754 222 4679999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.|+.+..+... .+. ...++.+++.+||++..|..+++
T Consensus 97 ltv~eni~~~~~~~~~~~----------~~~------------------------~~~v~~~l~~~~L~~~~~~~~~~-- 140 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------EEI------------------------RKRVEEVAKILDIHHVLNHFPRE-- 140 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------HHH------------------------HHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred CCHHHHHHHHHHHcCCCH----------HHH------------------------HHHHHHHHHHcCCchHhcCChhh--
Confidence 999999999765432110 000 01245689999999988877764
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++
T Consensus 141 ---LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVK 216 (353)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999977668898888765 4578899999999999
Q ss_pred CeEEEecChhHHH
Q 045902 422 GEIVYQGPREYVL 434 (1472)
Q Consensus 422 G~iv~~G~~~~~~ 434 (1472)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=352.66 Aligned_cols=206 Identities=26% Similarity=0.305 Sum_probs=174.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 263 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999886421 1356999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.|.....+.. ..+ . ...++.+++.+||++..++.+++
T Consensus 105 v~enl~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~gL~~~~~~~~~~---- 146 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------SSE----------I--------------EEMVERATEIAGLGEKIKDRVST---- 146 (256)
T ss_dssp HHHHHHHHHHHHCCC----------HHH----------H--------------HHHHHHHHHHHCCGGGGGSBGGG----
T ss_pred HHHHHHHHHHHcCCC----------hHH----------H--------------HHHHHHHHHHCCCchHhcCChhh----
Confidence 999999864322110 000 0 00135678999999888877765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .+.|+|++.|++ .++..++|++++|++|+
T Consensus 147 -LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 147 -YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGT 223 (256)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999975 488998887764 46778899999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=349.50 Aligned_cols=204 Identities=21% Similarity=0.339 Sum_probs=171.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999999875432 2359999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhC-CcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG-LDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~vg~~ 340 (1472)
+||+||+.++.... .. ..+.. ...+.+++.++ |++..++.++
T Consensus 96 ltv~enl~~~~~~~-~~--------------------~~~~~--------------~~~~~~l~~~~~l~~~~~~~~~-- 138 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD--------------------KEGIK--------------RDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTC-CC--------------------SSHHH--------------HHHHHHHHHCHHHHTTTTSBSS--
T ss_pred CcHHHHHHHhhhcC-CC--------------------HHHHH--------------HHHHHHHHHcccHhhHhcCChh--
Confidence 99999998863111 00 00000 01345678884 8777776655
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|++.|++ .++.+++|++++|+
T Consensus 139 ---~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999976 588888887764 46778999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=353.16 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=169.0
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
.+|+|||++|++||+++|+||||||||||+++|+|..+ +. |+|.++|.+... ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 48999999999999999999999999999999999887 45 999999987532 3345679999999998899999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC-------CccccCCCCCC
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS-------IIFMDEPTSGL 1053 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~-------il~LDEPTsgL 1053 (1472)
+||+.+...... ....++++++.+++.+..++.. ..|||||||||+|||||+.+|+ +|+|||||+||
T Consensus 91 ~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L 164 (249)
T 2qi9_C 91 WHYLTLHQHDKT-RTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164 (249)
T ss_dssp HHHHHTTCSSTT-CHHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC
T ss_pred HHHHHHhhccCC-cHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC
Confidence 999987532111 2556788999999988777653 4799999999999999999999 99999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |+++..|+..
T Consensus 165 D~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 165 DVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999877999999999975 45678999999985 7888888753
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=354.23 Aligned_cols=210 Identities=25% Similarity=0.280 Sum_probs=168.4
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC--CCCCeeEEEEEEcCcc
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGYIEGSISISGYP 955 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~--~~~~~~~G~i~i~G~~ 955 (1472)
+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|. .+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 5677777654 235799999999999999999999999999999999997 43 569999999988
Q ss_pred CCh---hcc-cceeEEeccCCCCCCCCCHHHHHHHHHHc--C--CCc---hHHHHHHHHHccc-ccccccccCCCCCCC-
Q 045902 956 KKQ---ETF-ARISGYCEQNDIHSPNVTIYESLLYSAWL--R--LPK---DMFVEEVMELVEM-KALRNSLVGLPGVDG- 1022 (1472)
Q Consensus 956 ~~~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l--~--~~~---~~~~~~v~~~l~l-~~~~~~~~~~~~~~~- 1022 (1472)
... ... ++.++|++|++.+++.+||+|++.+.... . .+. ...++++++.+++ .++.++.+ ..
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccC
Confidence 643 122 33489999999999999999999876421 1 111 2356778888888 46666654 35
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHh-hCeEEEEecCcE
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGH 1101 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~-~D~v~~l~~gg~ 1101 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++. +... +|++++|++ |+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CE
Confidence 99999999999999999999999999999999999999999999997779999999999863 4445 599999985 78
Q ss_pred EEEEcCCC
Q 045902 1102 VIYAGPLG 1109 (1472)
Q Consensus 1102 v~~~g~~~ 1109 (1472)
++..|+..
T Consensus 222 i~~~g~~~ 229 (250)
T 2d2e_A 222 VVATGGPE 229 (250)
T ss_dssp EEEEESHH
T ss_pred EEEEeCHH
Confidence 98888753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=349.93 Aligned_cols=201 Identities=22% Similarity=0.331 Sum_probs=172.7
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+|+|+|+.+++ |+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999987 9999999999865322 467999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.|+.+..+. ...+ ..++.+++.+||++..|..+++ ||
T Consensus 90 nl~~~~~~~~~----------~~~~--------------------------~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VERD--------------------------RRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----------HHHH--------------------------HHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----------chHH--------------------------HHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99986432210 0000 0135578999999888877765 99
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..|.|+|++.|+. .++.+++|++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765578888887654 56778999999999999999
Q ss_pred ecChhHHH
Q 045902 427 QGPREYVL 434 (1472)
Q Consensus 427 ~G~~~~~~ 434 (1472)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=350.90 Aligned_cols=211 Identities=25% Similarity=0.380 Sum_probs=173.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEh
Confidence 567788776541 0235799999999999999999999999999999999998874 589999999886
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccccccc-------CCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV-------GLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~-------~~~~~~~LSgG 1026 (1472)
.. ..+++.+||++|++.+++ .||+||+.+.. .......++++++.+++.++.+... +. .+..||||
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgG 149 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN--PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGG 149 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC--TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHH
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC--CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHH
Confidence 43 334567999999998876 69999998752 1122345677788888876655432 22 24589999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++. .+.||++++|++ |++++.|
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~--~~~~d~v~~l~~-G~i~~~g 225 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST--VKNADRIIVMEK-GKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG--GTTSSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999995 59999999999863 356999999985 7888888
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 226 ~~ 227 (247)
T 2ff7_A 226 KH 227 (247)
T ss_dssp CH
T ss_pred CH
Confidence 74
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=359.41 Aligned_cols=211 Identities=27% Similarity=0.347 Sum_probs=174.7
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 3588899887752 235699999999999999999999999999999999998874 59999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.. ..+++.+|||+|++.+++ .||+||+.|+... ..+..++++++.+++.+.. ++.++.. ...|||
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSG 193 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT--AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGER-GLKLSG 193 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT--CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTT-SBCCCH
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc--CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCC-cCCCCH
Confidence 643 345678999999998885 6999999875421 2234566677777665543 2334433 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
||||||+|||||+.+|+||+|||||||||+.++..|++.|+++.+ ++|||+++|+++ ....||++++|++ |+++..
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~aD~i~vl~~-G~iv~~ 269 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS--TVVNADQILVIKD-GCIVER 269 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH--HHHTCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH--HHHcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999864 799999999976 3456999999985 799999
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 270 G~~ 272 (306)
T 3nh6_A 270 GRH 272 (306)
T ss_dssp ECH
T ss_pred CCH
Confidence 985
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=348.23 Aligned_cols=200 Identities=24% Similarity=0.387 Sum_probs=168.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+. +++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 5 l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~------ 64 (253)
T 2nq2_C 5 LSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEV------ 64 (253)
T ss_dssp EEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEEE------
T ss_pred EEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE------
Confidence 66777776541 035799999999999999999999999999999999998874 5899982
Q ss_pred hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC-----CCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-----LPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 958 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~-----~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
++.+||++|++.+++.+||+||+.+..... .+. ...++++++.+++.+..++.. ..|||||||
T Consensus 65 ----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 135 (253)
T 2nq2_C 65 ----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQ 135 (253)
T ss_dssp ----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHH
T ss_pred ----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHH
Confidence 356899999999988999999998864321 112 245678889999887777653 479999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+ ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999999999999999999999999999876 999999999975 46678999999986 67 777765
Q ss_pred C
Q 045902 1109 G 1109 (1472)
Q Consensus 1109 ~ 1109 (1472)
.
T Consensus 213 ~ 213 (253)
T 2nq2_C 213 R 213 (253)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=350.48 Aligned_cols=214 Identities=25% Similarity=0.301 Sum_probs=173.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 47888887765 23579999999999999999999999999999999999742225689999999875
Q ss_pred Ch---hcc-cceeEEeccCCCCCCCCCHHHHHHHHHH-c----CC---Cch---HHHHHHHHHcccc-cccccccCCCCC
Q 045902 957 KQ---ETF-ARISGYCEQNDIHSPNVTIYESLLYSAW-L----RL---PKD---MFVEEVMELVEMK-ALRNSLVGLPGV 1020 (1472)
Q Consensus 957 ~~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-l----~~---~~~---~~~~~v~~~l~l~-~~~~~~~~~~~~ 1020 (1472)
.. ... ++.++|++|++.+++.+||.|++.+... . .. +.+ ..++++++.+++. .+.++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 122 2348999999999999999999976431 1 11 111 3466788888885 45554432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHh-hCeEEEEecC
Q 045902 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1099 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~-~D~v~~l~~g 1099 (1472)
..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|++++++|+|||++||+++. +... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEEC-
Confidence 2499999999999999999999999999999999999999999999997779999999999763 4344 899999985
Q ss_pred cEEEEEcCCC
Q 045902 1100 GHVIYAGPLG 1109 (1472)
Q Consensus 1100 g~v~~~g~~~ 1109 (1472)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 7899888863
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=345.93 Aligned_cols=195 Identities=18% Similarity=0.267 Sum_probs=166.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+ ++ ++|+|||++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 46677776553 34 699999999999999999999999999999999998774 589999999876
Q ss_pred ChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC--CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH
Q 045902 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL--PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA 1034 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA 1034 (1472)
. ..++.++|++|++.+++.+||+||+.+....+. .....++++++.+++.+. +.. +..|||||||||+||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLA 145 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHH
Confidence 5 356779999999999999999999998754322 124567888999998776 544 347999999999999
Q ss_pred HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1035 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1035 ~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++++
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 9999999999999999999999999999999999867899999999987 355667777655
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.62 Aligned_cols=205 Identities=25% Similarity=0.361 Sum_probs=172.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCC-CCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHD-LHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 264 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999987 999999999875432246799999995 56778999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc--ccccccccCccC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD--ICADIMVGNEMR 342 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~--~~~dt~vg~~~~ 342 (1472)
+||+.|+.... .. ..+ ....++.+++.+||+ +..++.+++
T Consensus 97 ~enl~~~~~~~-~~--------------------~~~--------------~~~~~~~~l~~~gl~~~~~~~~~~~~--- 138 (266)
T 2yz2_A 97 FDEVAFAVKNF-YP--------------------DRD--------------PVPLVKKAMEFVGLDFDSFKDRVPFF--- 138 (266)
T ss_dssp HHHHHHTTTTT-CT--------------------TSC--------------SHHHHHHHHHHTTCCHHHHTTCCGGG---
T ss_pred HHHHHHHHHhc-CC--------------------HHH--------------HHHHHHHHHHHcCcCCcccccCChhh---
Confidence 99999864321 00 000 001235678999998 888877654
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|++.|++. ++..++|++++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765 889998887654 667789999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
++++.|+.+++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=341.59 Aligned_cols=200 Identities=27% Similarity=0.421 Sum_probs=161.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++ +
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999987 9999999999876432 356999999998886 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccc-------cc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICA-------DI 335 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-------dt 335 (1472)
||+||+.|+.. .. . . .+ ++.+++.+|+.+.. ++
T Consensus 98 tv~enl~~~~~--~~-~-~------------------~~------------------~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--GM-S-V------------------EK------------------VIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--TC-C-H------------------HH------------------HHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--CC-C-H------------------HH------------------HHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 00 0 0 00 11123333333222 23
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ +.+|+
T Consensus 138 ~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d~ 212 (247)
T 2ff7_A 138 IVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNADR 212 (247)
T ss_dssp BCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSSE
T ss_pred hhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCCE
Confidence 333 3456799999999999999999999999999999999999999999999984 4789999888754 34 46999
Q ss_pred EEEecCCeEEEecChhHHH
Q 045902 416 IILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~ 434 (1472)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=350.87 Aligned_cols=211 Identities=23% Similarity=0.304 Sum_probs=167.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+.. .+++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 4778888765421 0125699999999999999999999999999999999998874 589999999876
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchH--------HHHHHHHHc--ccccccccccCCCCCCCC
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDM--------FVEEVMELV--EMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~--------~~~~v~~~l--~l~~~~~~~~~~~~~~~L 1023 (1472)
.. ..+++.+||++|++.+++ .||+||+.+........+. .++++++.+ ++....+.. +..|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 157 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----GNQL 157 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----GTTS
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----cCCC
Confidence 42 234567999999998877 5999999875322111011 123445555 455444443 3479
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|||++||+++ ..+.||++++|++ |++
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~i 234 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GSV 234 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999864 4899999999965 3456999999985 788
Q ss_pred EEEcCC
Q 045902 1103 IYAGPL 1108 (1472)
Q Consensus 1103 ~~~g~~ 1108 (1472)
+..|+.
T Consensus 235 ~~~g~~ 240 (271)
T 2ixe_A 235 CEQGTH 240 (271)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 888875
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=349.38 Aligned_cols=197 Identities=27% Similarity=0.425 Sum_probs=165.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.+||++|++.+++ .|
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~t 91 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-cc
Confidence 5699999999999999999999999999999999998774 58999999987643 334567999999998877 59
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHccccccccccc-------CCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV-------GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~-------~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
|+||+.+... ....+..++++++.+++.++.+... +. .+..|||||||||+|||||+.+|++|+|||||+|
T Consensus 92 v~enl~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~ 169 (243)
T 1mv5_A 92 IRENLTYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169 (243)
T ss_dssp HHHHTTSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCS
T ss_pred HHHHHhhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 9999987421 1122355778888888877665432 22 2458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1053 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+.++..+++.|+++. +|+|||++||+++ ..+.+|++++|++ |+++..|+.
T Consensus 170 LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 170 LDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp SCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCH
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999997 6999999999975 3456999999985 788887775
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=346.88 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=168.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCC--CCCC---CceEEEEcCCCCCC-
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELT--EFVP---QRTCAYISQHDLHH- 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--~~~~---~~~~~yv~Q~d~~~- 259 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++. .... ++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 36999999999999999999999999999999999999987 999999999876 3322 35699999987543
Q ss_pred -CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 260 -GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 260 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+.+||+||+.++..... + .+. . +..+. ...++.+++.+||++..++.++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~---~-----------~~~~~--------------~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ---D-----------IDDEI--------------RNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CCHHH--------------HHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc---C-----------CcHHH--------------HHHHHHHHHHcCChhHhcCChh
Confidence 35699999988532100 0 000 0 00000 0123567899999988887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--EEEEecCcchHHhccCeE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTM--IISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tv--ii~~~q~~~~~~~~fD~i 416 (1472)
+ |||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++. +.|+ |++.|+. .++.+++|+|
T Consensus 161 ~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v 233 (279)
T 2ihy_A 161 Y-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKI 233 (279)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEE
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEE
Confidence 5 9999999999999999999999999999999999999999999999775 7888 8877664 4677899999
Q ss_pred EEecCCeEEEecChhHH
Q 045902 417 ILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~ 433 (1472)
++|++|++++.|+++++
T Consensus 234 ~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999998776
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=343.87 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=169.5
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+.. ...+.+|+|||++|++||++||+||||||||||+++|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 3778888765421 011469999999999999999999999999999999999875 3 79999999876
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccc-------cccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN-------SLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~-------~~~~~~~~~~LSgG 1026 (1472)
.. ..+++.+||++|++.+++ .||+||+.+... . ..++.+.++++.+++.+..+ +..+.. +..||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~-~~~LSgG 159 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-D-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNK-GMKLSGG 159 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-T-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-SBCCCHH
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-C-CCHHHHHHHHHHhCCHHHHHhccccccccccCC-cCcCCHH
Confidence 32 334567999999998876 699999987421 1 22344566777777655432 222222 4589999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||++||+++. .+.||++++|++ |+++..|
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~--~~~~d~i~~l~~-G~i~~~g 235 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST--ISSAESIILLNK-GKIVEKG 235 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--STTCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH--HHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999964 8999999999863 356999999985 7888888
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 236 ~~ 237 (260)
T 2ghi_A 236 TH 237 (260)
T ss_dssp CH
T ss_pred CH
Confidence 75
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=344.22 Aligned_cols=209 Identities=22% Similarity=0.373 Sum_probs=167.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46899999999999999999999999999999999999987 9999999999865432 356999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh--CCcccccccccCc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL--GLDICADIMVGNE 340 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l--gL~~~~dt~vg~~ 340 (1472)
||+||+.|+..... .. + +..+... ....+.+++.+ ||+...+..+
T Consensus 108 tv~enl~~~~~~~~--~~-~---~~~~~~~------------------------~~~~~~~l~~l~~gl~~~~~~~~--- 154 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--TM-E---EITAVAM------------------------ESGAHDFISGFPQGYDTEVGETG--- 154 (271)
T ss_dssp BHHHHHHTTCSSCC--CH-H---HHHHHHH------------------------HHTCHHHHHHSTTGGGSBCCGGG---
T ss_pred cHHHHHhhhcccCC--hH-H---HHHHHHH------------------------HHhHHHHHHhhhcchhhhhcCCc---
Confidence 99999998642110 00 0 0000000 01124467777 6766666554
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+..++|+|++.|++. .+ ..+|+|++|+
T Consensus 155 --~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~ 230 (271)
T 2ixe_A 155 --NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLK 230 (271)
T ss_dssp --TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEE
T ss_pred --CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 4599999999999999999999999999999999999999999999986545889998887653 44 4599999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=341.49 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=163.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeE-EeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISG-YCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~g-yv~Q~~~~~~~lTv~ 981 (1472)
+.+|+|+|++++ ||+++|+|||||||||||++|+|.. +. +|+|.++|.+......++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 569999999999 9999999999999999999999987 53 899999998754211155789 99999877 89999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~ 1060 (1472)
||+.+.........+.++++++.+++. +..++.. ..|||||||||+|||||+.+|++|+|||||+|||+.++..
T Consensus 92 enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 166 (263)
T 2pjz_A 92 DIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166 (263)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHH
Confidence 999987654333345678899999998 7766653 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCccHHHHHhhC-eEEEEecCcEEEEEcCC
Q 045902 1061 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1061 i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D-~v~~l~~gg~v~~~g~~ 1108 (1472)
+++.|+++++ |||++||+++ .+.+.|| ++++|++ |++++.|+.
T Consensus 167 l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 167 ISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp HHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 9999999853 9999999986 3567899 9999985 789888874
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=337.22 Aligned_cols=197 Identities=23% Similarity=0.316 Sum_probs=168.7
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 263 (1472)
++|+|+|+.+++||+++|+||||||||||||+|+|.++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 479999999999999999999999999999999999987 3 999999998865432 356999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.++.. ... . . ..++.+++.+||++..|..+++
T Consensus 90 v~e~l~~~~~-~~~----------~-~---------------------------~~~~~~l~~~~l~~~~~~~~~~---- 126 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----------R-T---------------------------ELLNDVAGALALDDKLGRSTNQ---- 126 (249)
T ss_dssp HHHHHHTTCS-STT----------C-H---------------------------HHHHHHHHHTTCGGGTTSBGGG----
T ss_pred HHHHHHHhhc-cCC----------c-H---------------------------HHHHHHHHHcCChhHhcCChhh----
Confidence 9999987521 000 0 0 0135578899999888876654
Q ss_pred CCChHHHHHHHHHHHHhCCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 344 GISGGQKKRVTTGEMLVGPAK-------ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~-------illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
|||||||||+||+||+.+|+ +|+|||||+|||+.++..+.+.|+++++. |.|+|++.|++ .++.+++|++
T Consensus 127 -LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v 203 (249)
T 2qi9_C 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRA 203 (249)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEE
Confidence 99999999999999999999 99999999999999999999999999764 88988887654 4667899999
Q ss_pred EEecCCeEEEecChhHH
Q 045902 417 ILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~ 433 (1472)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=338.27 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=163.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC--CCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK--SDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~--~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|. ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 6666 8999999999876432 23489999999999
Q ss_pred CCCCHHHHHHHhhhc-cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCC-cccccccc
Q 045902 260 GEMTVRETLDFSGRC-LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGL-DICADIMV 337 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL-~~~~dt~v 337 (1472)
+.+||+||+.+.... .+... ... +. ...++.+++.+|| ++..|+.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~--------~~~----------~~--------------~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV--------GVA----------EF--------------WTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC--------CHH----------HH--------------HHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC--------CHH----------HH--------------HHHHHHHHHHcCCChhHhcCCc
Confidence 999999999885421 11000 000 00 0123567899999 47777665
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc-cCeE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-FDDI 416 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~-fD~i 416 (1472)
++ +|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++..+ +|+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQR-ILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSG-GGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCCEE
Confidence 42 3999999999999999999999999999999999999999999999865 5789998887754 55666 5999
Q ss_pred EEecCCeEEEecChhH
Q 045902 417 ILLSEGEIVYQGPREY 432 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~ 432 (1472)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=333.10 Aligned_cols=197 Identities=17% Similarity=0.251 Sum_probs=165.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ ++.++|++|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999987 999982 35699999999999999999
Q ss_pred HHHHHhhhcc-CCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 266 ETLDFSGRCL-GVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 266 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
||+.++.... +... .+..+. ...++.+++.+||++..+..+++
T Consensus 85 enl~~~~~~~~~~~~-----------------~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFA-----------------KPKSHD--------------YQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCTTC-----------------CCCHHH--------------HHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccccc-----------------CCCHHH--------------HHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999864211 1000 000000 01235678999999888877654
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999999775588998887764 46778999999999999
Q ss_pred EEecChhHH
Q 045902 425 VYQGPREYV 433 (1472)
Q Consensus 425 v~~G~~~~~ 433 (1472)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=335.26 Aligned_cols=221 Identities=22% Similarity=0.253 Sum_probs=171.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS--DKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHH 259 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 259 (1472)
+++|+|+|+.+++||+++|+||||||||||||+|+|.. +|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 46999999999999999999999999999999999984 455 8999999998865432 13499999999999
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-cccccccc
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVG 338 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg 338 (1472)
+.+||+|++.+..... .. .......+..+. ...++.+++.+||+ +..++.++
T Consensus 110 ~~~tv~e~~~~~~~~~------------~~-~~~~~~~~~~~~--------------~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAV------------RS-YRGQETLDRFDF--------------QDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHH------------HH-GGGCCCCCHHHH--------------HHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhh------------hh-hhccccCCHHHH--------------HHHHHHHHHHcCCChhHhcCCcc
Confidence 9999999998743100 00 000000000000 01245678999996 46666553
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc-cCeEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL-FDDII 417 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~-fD~ii 417 (1472)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ .++|+|++.|++ .++..+ +|+++
T Consensus 163 ----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 ----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYVH 236 (267)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEEE
T ss_pred ----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEEE
Confidence 14999999999999999999999999999999999999999999999864 478998887765 355555 89999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCC
Q 045902 418 LLSEGEIVYQGPREYVLDFFESVGFR 443 (1472)
Q Consensus 418 lL~~G~iv~~G~~~~~~~~F~~~G~~ 443 (1472)
+|++|++++.|+++++.. .+..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988753 4455543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=337.84 Aligned_cols=202 Identities=24% Similarity=0.348 Sum_probs=165.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46899999999999999999999999999999999999987 9999999999865432 457999999998887 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccc------
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIM------ 336 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~------ 336 (1472)
||+||+.|+... .. . +. .++.+++.+|+.+..+..
T Consensus 91 tv~enl~~~~~~-~~-~-------------------~~------------------~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-DY-T-------------------DE------------------DLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-CS-C-------------------HH------------------HHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-CC-C-------------------HH------------------HHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 00 0 00 023345666766554433
Q ss_pred -ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 337 -VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 337 -vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ ..+|+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~-~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS-TI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH-HH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH-HH-HhCCE
Confidence 32 3456799999999999999999999999999999999999999999999986 4789999888754 44 56999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 045902 416 IILLSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 416 iilL~~G~iv~~G~~~~~~~ 435 (1472)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=334.41 Aligned_cols=206 Identities=22% Similarity=0.355 Sum_probs=162.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.+++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4689999999999999999999999999999999999864 7999999998865432 356999999998885 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh-CCcccccccccCcc
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL-GLDICADIMVGNEM 341 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~~ 341 (1472)
||+||+.|+.. .. .. .++.+.++. .+ +.+.+ ++++..||.++ +.
T Consensus 108 tv~enl~~~~~--~~-~~-------------------~~~~~~l~~---~~---------l~~~~~~l~~~~~~~~~-~~ 152 (260)
T 2ghi_A 108 TIKYNILYGKL--DA-TD-------------------EEVIKATKS---AQ---------LYDFIEALPKKWDTIVG-NK 152 (260)
T ss_dssp EHHHHHHTTCT--TC-CH-------------------HHHHHHHHH---TT---------CHHHHHTSTTGGGCEES-SS
T ss_pred CHHHHHhccCC--CC-CH-------------------HHHHHHHHH---hC---------CHHHHHhcccccccccc-CC
Confidence 99999988521 00 00 000000000 00 01111 34555666665 45
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|+|++.|++. .+ +.+|+|++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~-~~-~~~d~i~~l~~ 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS-TI-SSAESIILLNK 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GS-TTCSEEEEEET
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-HhCCEEEEEEC
Confidence 677999999999999999999999999999999999999999999999853 689999888764 33 46999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+++..|+++++..
T Consensus 229 G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 229 GKIVEKGTHKDLLK 242 (260)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999988753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=331.74 Aligned_cols=194 Identities=22% Similarity=0.178 Sum_probs=164.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEE-EEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCA-YISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 264 (1472)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 87 999999999875431245799 99999877 8999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc-ccccccccCccCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD-ICADIMVGNEMRR 343 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~~~ 343 (1472)
+||+.+...... .+ ...++.+++.+||+ +..++.+++
T Consensus 91 ~enl~~~~~~~~---------------------~~-----------------~~~~~~~l~~~gl~~~~~~~~~~~---- 128 (263)
T 2pjz_A 91 NDIVYLYEELKG---------------------LD-----------------RDLFLEMLKALKLGEEILRRKLYK---- 128 (263)
T ss_dssp HHHHHHHHHHTC---------------------CC-----------------HHHHHHHHHHTTCCGGGGGSBGGG----
T ss_pred HHHHHHhhhhcc---------------------hH-----------------HHHHHHHHHHcCCChhHhcCChhh----
Confidence 999988532110 00 00135578899998 877776654
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC-eEEEecCC
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD-DIILLSEG 422 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD-~iilL~~G 422 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|++.|++ .++.+++| ++++|++|
T Consensus 129 -LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 129 -LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp -SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEECC
Confidence 999999999999999999999999999999999999999999998642 888877664 46778999 99999999
Q ss_pred eEEEecChhHHH
Q 045902 423 EIVYQGPREYVL 434 (1472)
Q Consensus 423 ~iv~~G~~~~~~ 434 (1472)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=372.06 Aligned_cols=208 Identities=24% Similarity=0.388 Sum_probs=168.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46899999999999999999999999999999999999998 9999999999887643 3579999999988865
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.... .. +++. +++...+. +.. .-.+++..||.+| +.+
T Consensus 430 tv~eni~~~~~~~---~~-------------------~~~~---~~~~~~~~------~~~--~~~lp~g~~t~~~-~~g 475 (578)
T 4a82_A 430 TVKENILLGRPTA---TD-------------------EEVV---EAAKMANA------HDF--IMNLPQGYDTEVG-ERG 475 (578)
T ss_dssp BHHHHHGGGCSSC---CH-------------------HHHH---HHHHHTTC------HHH--HHTSTTGGGCBCC-GGG
T ss_pred cHHHHHhcCCCCC---CH-------------------HHHH---HHHHHhCc------HHH--HHhCcchhhhhhc-cCC
Confidence 9999998853210 00 0111 11111110 111 2245666788888 567
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++. .++|+|++.|++. . .+.+|+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~-~~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS-T-ITHADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG-G-TTTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999999885 3688888877765 3 4569999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=328.57 Aligned_cols=200 Identities=22% Similarity=0.378 Sum_probs=159.0
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~-----------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWE-----------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSS-----------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeC-----------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 467788776542 1235799999999999999999999999999999999998874 589999998
Q ss_pred ChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccccc-------ccCCCCCCCCCHHHHH
Q 045902 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS-------LVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 957 ~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~-------~~~~~~~~~LSgGqrq 1029 (1472)
.++|++|++.+++. ||+||+.+... . .+...+++++.+++.+..+. .++.+ ...|||||||
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LSgGqkq 137 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS--Y-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEG-GITLSGGQRA 137 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC--C-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTTSCHHHHH
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC--c-ChHHHHHHHHHhCcHHHHHhCcccccccccCC-CCcCCHHHHH
Confidence 37999999988875 99999987431 1 12234455555555433222 22222 3589999999
Q ss_pred HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH-HHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1030 Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~-l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||+++ ..+.||++++|++ |+++..|+.
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999997 45654 4899999999975 3456999999986 788888875
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=330.43 Aligned_cols=199 Identities=22% Similarity=0.367 Sum_probs=158.4
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+. .+++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESC-----------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeC-----------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 56777776542 113569999999999999999999999999999999999987 5699999998
Q ss_pred hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCHHHHHH
Q 045902 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLSTEQRKR 1030 (1472)
Q Consensus 958 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSgGqrqR 1030 (1472)
.+||++|++.+ +.+||+||+.+.... . ....+++.+.+++.+.. ++..+. .+..||||||||
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqR 135 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL--E-EPYYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQR 135 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC--C-TTHHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHH
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc--C-HHHHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHH
Confidence 27999999864 688999999875322 1 22344555555543211 111222 246899999999
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHH---HHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~---~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
|+|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. .+.||++++|++ |+++..|+
T Consensus 136 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~--~~~~d~v~~l~~-G~i~~~g~ 211 (237)
T 2cbz_A 136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY--LPQVDVIIVMSG-GKISEMGS 211 (237)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT--GGGSSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH--HHhCCEEEEEeC-CEEEEeCC
Confidence 999999999999999999999999999999999995 443 58999999999874 357999999985 78888887
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 212 ~ 212 (237)
T 2cbz_A 212 Y 212 (237)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=351.45 Aligned_cols=200 Identities=24% Similarity=0.270 Sum_probs=164.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+.+|+|||+.|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|++.+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 468999999999999999999999999999999999986 5 8999999999887654 367999999999887 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC---
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN--- 339 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~--- 339 (1472)
||+||+.+.... . + . .++.+++.+||++..+.....
T Consensus 109 tv~enl~~~~~~----~---------~----------~------------------~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH----S---------D----------Q------------------EIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS----C---------H----------H------------------HHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc----C---------H----------H------------------HHHHHHHHhCCHHHHhhccccccc
Confidence 999999642110 0 0 0 123356667776655544321
Q ss_pred ---ccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 340 ---EMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 340 ---~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+.|+|++.|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCEE
Confidence 3345599999999999999999999999999999999999999999999863 467888877764 455679999
Q ss_pred EEecCCeEEEecChhHHHH
Q 045902 417 ILLSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~~ 435 (1472)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=370.52 Aligned_cols=208 Identities=26% Similarity=0.343 Sum_probs=169.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46899999999999999999999999999999999999998 9999999999877653 367999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.... . ++++.+..+.+.+ +..+ -.+++..||.+| +.+
T Consensus 432 tv~eni~~~~~~~---~-------------------~~~~~~~~~~~~~---------~~~i--~~l~~g~~~~~~-~~~ 477 (587)
T 3qf4_A 432 TIKENLKWGREDA---T-------------------DDEIVEAAKIAQI---------HDFI--ISLPEGYDSRVE-RGG 477 (587)
T ss_dssp EHHHHHTTTCSSC---C-------------------HHHHHHHHHHTTC---------HHHH--HTSSSGGGCEEC-SSS
T ss_pred cHHHHHhccCCCC---C-------------------HHHHHHHHHHhCc---------HHHH--HhcccchhhHhc-CCC
Confidence 9999998753210 0 0011111111110 1111 245566788887 567
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|++.|++. ....+|+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~--~~~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIP--TALLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHH--HHTTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChH--HHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999999874 4789999888764 44689999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=353.45 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=175.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.+. .++..+|+|||++|++||+++|+|||||||||||++|+|..+ .+|+|.++|+++
T Consensus 19 ~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 477888877652 124579999999999999999999999999999999999874 489999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCC------CCCCCCCHHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGL------PGVDGLSTEQ 1027 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~------~~~~~LSgGq 1027 (1472)
.. ..+++.+|||+|++.+++ +||+||+.+.. ...++.++++++.+++.++.++.... .....|||||
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~---~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq 160 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA---AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC---CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc---ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence 43 335678999999999887 69999996422 22345678899999998877665331 1123499999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||||+|||||+.+|++|+|||||||||+.++..+++.|+++. .|+|||+++|+.+ ....+|++++|++ |+++..|+
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~ 236 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECC
Confidence 999999999999999999999999999999999999999874 4899999999965 4567999999985 79999998
Q ss_pred CC
Q 045902 1108 LG 1109 (1472)
Q Consensus 1108 ~~ 1109 (1472)
+.
T Consensus 237 ~~ 238 (390)
T 3gd7_A 237 IL 238 (390)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=321.40 Aligned_cols=188 Identities=18% Similarity=0.258 Sum_probs=155.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++|++|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999987 999999999876 23567999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+.++....+. .. + ...++.+++.+||++. +..+. .||
T Consensus 98 nl~~~~~~~~~--------------------~~-~---------------~~~~~~~l~~~gl~~~-~~~~~-----~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV--------------------KV-N---------------KNEIMDALESVEVLDL-KKKLG-----ELS 135 (214)
T ss_dssp HHHHHHHHTTC--------------------CC-C---------------HHHHHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHhcCC--------------------ch-H---------------HHHHHHHHHHcCCCcC-CCChh-----hCC
Confidence 99886432110 00 0 0113557889999876 65554 599
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. ++|+|++.|++. ++.+++|+|++ ..|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHK-YSTKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGG-GBC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEE-eCCcc
Confidence 99999999999999999999999999999999999999999998764 789999887764 56677777764 44554
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=321.86 Aligned_cols=196 Identities=21% Similarity=0.311 Sum_probs=152.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46899999999999999999999999999999999999987 99999998 38999999988875 999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.|+.... .. .. +...+.. ..+..++.+ ....++.++ +.+..|
T Consensus 87 enl~~~~~~~----~~----~~---------------~~~~~~~---------~l~~~~~~~--~~~~~~~~~-~~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----EY----RY---------------RSVIKAC---------QLEEDISKF--AEKDNIVLG-EGGITL 131 (229)
T ss_dssp HHHHTTSCCC----HH----HH---------------HHHHHHT---------TCHHHHTTS--TTGGGSCBC-TTCTTS
T ss_pred HHhhccCCcC----hH----HH---------------HHHHHHh---------CcHHHHHhC--ccccccccc-CCCCcC
Confidence 9998853210 00 00 0000000 001112222 222344454 345679
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRF-MRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~-L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
||||||||+|||||+.+|++++|||||+|||+.++..+++. ++++. .++|+|++.|++. ++ ..+|++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH-HH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH-HH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999997 45553 3689988887753 44 46999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998774
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=365.35 Aligned_cols=209 Identities=22% Similarity=0.357 Sum_probs=168.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46899999999999999999999999999999999999998 9999999999876543 357999999998887 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.. ... . ++++++..+ ..+ .+..++. +++..||.+| +.+
T Consensus 432 tv~eni~~~~~-~~~-~-------------------~~~~~~~l~---~~~------l~~~~~~--~p~g~~~~~~-~~~ 478 (582)
T 3b60_A 432 TVANNIAYART-EEY-S-------------------REQIEEAAR---MAY------AMDFINK--MDNGLDTIIG-ENG 478 (582)
T ss_dssp BHHHHHHTTTT-SCC-C-------------------HHHHHHHHH---TTT------CHHHHHH--STTGGGSBCC-TTS
T ss_pred CHHHHHhccCC-CCC-C-------------------HHHHHHHHH---HcC------CHHHHHh--cccccccccc-CCC
Confidence 99999988531 000 0 011111111 111 1122222 3445688887 467
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.+|+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH--HHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999863 789999888764 34579999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999998864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=364.73 Aligned_cols=209 Identities=23% Similarity=0.365 Sum_probs=167.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999998 8999999999876543 467999999998886 5
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.. .. . +++++++..+.+.+ +..++ .+++..||.+| +.+
T Consensus 432 tv~eni~~~~~-~~--~------------------~~~~~~~~~~~~~l---------~~~~~--~~p~g~~t~~~-~~~ 478 (582)
T 3b5x_A 432 TIANNIAYAAE-GE--Y------------------TREQIEQAARQAHA---------MEFIE--NMPQGLDTVIG-ENG 478 (582)
T ss_pred cHHHHHhccCC-CC--C------------------CHHHHHHHHHHCCC---------HHHHH--hCcccccchhc-CCC
Confidence 99999988531 00 0 00111111111111 11222 23445678887 457
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.+|+|++|++|
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 554 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLS--TIEQADEILVVDEG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999853 789999888764 34579999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 555 EIIERGRHADLLA 567 (582)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998753
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=321.91 Aligned_cols=196 Identities=24% Similarity=0.308 Sum_probs=153.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46899999999999999999999999999999999999887 99999998 3899999986 4688999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc-cccccccCccCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI-CADIMVGNEMRRG 344 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg~~~~~g 344 (1472)
||+.|+.... .. ..++..++. .+.+.+++.. ..+|.++ ..+..
T Consensus 84 enl~~~~~~~--~~---------------------~~~~~~~~~------------~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EP---------------------YYRSVIQAC------------ALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TT---------------------HHHHHHHHT------------TCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HH---------------------HHHHHHHHH------------hhHHHHHhcccccccccc-CCCCC
Confidence 9998853211 00 000000000 0122233321 2233333 45667
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMR---QMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~---~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+ ++. .++|+|++.|++. .+ +.+|++++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 332 3789999888765 33 57999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|++++.|+++++..
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=364.81 Aligned_cols=213 Identities=22% Similarity=0.297 Sum_probs=173.9
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEE
Confidence 35889998876531 235699999999999999999999999999999999998874 59999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.. ..+++.+|||+|++.+++. ||+||+.++.. ...++.+.++++..++.+.. |+.++.. ..+|||
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~-~~~LSg 482 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG-GRNFSG 482 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSS-SCSSCH
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCC-CCCcCH
Confidence 643 3456789999999988865 99999986531 12234455555555554322 3344443 357999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++ ....+|++++|++ |+++..
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~-G~i~~~ 558 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE-GKVAGF 558 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999999999999999984 5899999999975 4568999999985 799999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+.+
T Consensus 559 g~~~ 562 (587)
T 3qf4_A 559 GTHK 562 (587)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=365.65 Aligned_cols=212 Identities=24% Similarity=0.320 Sum_probs=175.6
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEc
Confidence 4788888876521 124699999999999999999999999999999999998874 589999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccc-------cccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRN-------SLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~-------~~~~~~~~~~LSgG 1026 (1472)
.. ..+++.+|||+|++.+++. ||+||+.+... ....++.++++++.+++.+..+ +.++.. ..+||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgG 484 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGG 484 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHH
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHH
Confidence 43 3456779999999988874 99999988531 1223456777888887765543 334433 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|||+++|+++. .+.||++++|++ |+++..|
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g 560 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED-GIIVERG 560 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEec
Confidence 99999999999999999999999999999999999999999965 8999999999863 467999999985 7899988
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 561 ~~ 562 (582)
T 3b60_A 561 TH 562 (582)
T ss_dssp CH
T ss_pred CH
Confidence 75
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=364.03 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=173.4
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|+++.++. ++..+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 35888998876531 235699999999999999999999999999999999998874 59999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.+ ..+++.+|||+|++.+++. ||+||+.++.. ...++.+.++++..++.+.. |+.+|.. ..+|||
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~-g~~LSg 480 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER-GVKLSG 480 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTSCH
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccC-CCcCCH
Confidence 643 4456789999999988876 99999987521 12234455666666654432 2333332 347999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|+++|+++. .+.||++++|++ |+++..
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~-G~i~~~ 556 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIEN-GHIVET 556 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999999999999999985 47999999999874 467999999985 799999
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|+.
T Consensus 557 g~~ 559 (578)
T 4a82_A 557 GTH 559 (578)
T ss_dssp ECH
T ss_pred CCH
Confidence 985
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=365.57 Aligned_cols=208 Identities=25% Similarity=0.370 Sum_probs=168.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 45899999999999999999999999999999999999998 9999999999987653 357999999998885 6
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++.... . ++++.+..+ ..+ .+..++ .+++..||.+| +.+
T Consensus 444 tv~eni~~~~~~~---~-------------------~~~~~~~~~---~~~------~~~~~~--~~~~g~~t~~~-~~g 489 (598)
T 3qf4_B 444 TVKENLKYGNPGA---T-------------------DEEIKEAAK---LTH------SDHFIK--HLPEGYETVLT-DNG 489 (598)
T ss_dssp BHHHHHHSSSTTC---C-------------------TTHHHHHTT---TTT------CHHHHH--TSTTGGGCBCH-HHH
T ss_pred cHHHHHhcCCCCC---C-------------------HHHHHHHHH---HhC------CHHHHH--hccccccchhc-CCC
Confidence 9999998853210 0 111111111 000 111222 34556688887 566
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++. .++|+|++.|++. . .+.+|+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~-~~~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN-T-IKNADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT-H-HHHCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999999985 4789999888775 3 4569999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=364.03 Aligned_cols=212 Identities=24% Similarity=0.318 Sum_probs=176.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEh
Confidence 5888998877631 124699999999999999999999999999999999998774 589999999886
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccccc-------ccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNS-------LVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~-------~~~~~~~~~LSgG 1026 (1472)
.. ..+++.+|||+|++.+++. ||+||+.++.. ....++.++++++.+++.+..+. .++.. ..+||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgG 484 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGG 484 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCC-CCcCCHH
Confidence 42 4456789999999988874 99999988531 11234567788888887765443 33333 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|++|+|||||||||+.++..+.+.|+++.+ |+|||+++|+++ ..+.||++++|++ |+++..|
T Consensus 485 q~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~~~g 560 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE-GEIIERG 560 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999975 4567999999985 7899988
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 561 ~~ 562 (582)
T 3b5x_A 561 RH 562 (582)
T ss_pred CH
Confidence 75
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=396.05 Aligned_cols=211 Identities=24% Similarity=0.348 Sum_probs=175.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 261 (1472)
..++|+|+|++|+|||.++|+||+|||||||+++|.|.++|+ +|+|.+||+++++... ++.++||+|++.+|.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~- 1166 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD- 1166 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC-
Confidence 446999999999999999999999999999999999999998 9999999999998764 478999999999885
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||||||.|+..-.. ..++++.++.+.+.++ |. .-.|++..||.|| +.
T Consensus 1167 gTIreNI~~gld~~~--------------------~sd~ei~~Al~~a~l~--------~~---I~~Lp~GldT~vg-e~ 1214 (1321)
T 4f4c_A 1167 CSIAENIIYGLDPSS--------------------VTMAQVEEAARLANIH--------NF---IAELPEGFETRVG-DR 1214 (1321)
T ss_dssp EEHHHHHSSSSCTTT--------------------SCHHHHHHHHHHTTCH--------HH---HHTSTTTTCSEET-TT
T ss_pred ccHHHHHhccCCCCC--------------------CCHHHHHHHHHHhCCh--------HH---HHcCcCCCCCEec-CC
Confidence 599999987531100 0122333333332221 22 2357788899999 56
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+.+||||||||++|||||+.+|+||+||||||+||+.|...|.+.|++.. .++|+|+..|.. .+...+|+|+||++
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRL--sTi~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRL--NTVMNADCIAVVSN 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSS--STTTTCSEEEEESS
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCH--HHHHhCCEEEEEEC
Confidence 77899999999999999999999999999999999999999999998864 478988887754 46778999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+|+++|+++++++
T Consensus 1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999975
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=361.91 Aligned_cols=210 Identities=25% Similarity=0.384 Sum_probs=170.4
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|+++.++ +++++|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEEh
Confidence 578899887652 234699999999999999999999999999999999999874 599999999886
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccc-------cCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSL-------VGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~-------~~~~~~~~LSgG 1026 (1472)
.. ..+++.+|||+|++.+++ .||+||+.++.. ...++.++++++..++.+..+.. +|.. ..+||||
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~-g~~LSgG 495 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDN-GEDLSQG 495 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHH-HTTSCHH
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchhcCC-CCCCCHH
Confidence 43 456678999999998885 599999987521 11223455555555554433322 2211 2479999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. .+.||++++|++ |+++..|
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~-G~i~~~g 571 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRD-GEIVEMG 571 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEECS-SSEEECS
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEEC
Confidence 9999999999999999999999999999999999999999985 58999999999873 456999999985 7899999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 572 ~~ 573 (598)
T 3qf4_B 572 KH 573 (598)
T ss_dssp CH
T ss_pred CH
Confidence 85
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=321.00 Aligned_cols=185 Identities=23% Similarity=0.389 Sum_probs=149.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.+|+||||+|++||++||+|||||||||||++|+|..+ +.+|+|.++| .++|++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 468999999999999999999999999999999999877 5699999998 37999999988875 9999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccc-------cCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSL-------VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~-------~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
|+. .. .. .....+++++.+++.+..+.. .+. .+..||||||||++|||||+.+|++|+|||||+|||+
T Consensus 118 nl~-~~--~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 118 NII-GV--SY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp HHH-TT--CC-CHHHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred Hhh-Cc--cc-chHHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 997 32 11 223344556666654432221 221 1357999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1056 RAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1056 ~~~~~i~~~l-~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |+++..|+..
T Consensus 193 ~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 193 LTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp HHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCHH
Confidence 9999999964 5554 4899999999975 3457999999985 7888888753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-32 Score=316.22 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=148.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5899999999999999999999999999999999999987 89999988 3899999998887 49999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
|+. +... .... .+...+.. + .+..++.+ ....++.++ +.+..||
T Consensus 118 nl~-~~~~----~~~~-------------------~~~~~~~~---~------l~~~l~~~--~~~~~~~~~-~~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DEYR-------------------YRSVIKAC---Q------LEEDISKF--AEKDNIVLG-EGGITLS 161 (290)
T ss_dssp HHH-TTCC----CHHH-------------------HHHHHHHT---T------CHHHHHTS--TTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----chHH-------------------HHHHHHHh---C------hHHHHHhc--cccccchhc-CccCcCC
Confidence 997 3211 0000 00000000 0 11122222 222344444 3456799
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEE
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFM-RQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L-~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv 425 (1472)
|||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++. .++|+|++.|++. .+ ..+|++++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH-HH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHH-HH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999974 4543 3789998887753 44 569999999999999
Q ss_pred EecChhHHH
Q 045902 426 YQGPREYVL 434 (1472)
Q Consensus 426 ~~G~~~~~~ 434 (1472)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=364.09 Aligned_cols=210 Identities=23% Similarity=0.320 Sum_probs=170.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
.++|+|+|+.++|||+++|+||||||||||+++|+|.++|+ +|+|.+||++++.... ++.++||+|++.++ +.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 46899999999999999999999999999999999999998 9999999999987653 46799999999776 57
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++...... .++++.+..+.+.+ +.. .-.+++..||.|| +.+
T Consensus 1122 ti~eNi~~~~~~~~~--------------------~~~~i~~~~~~~~~---------~~~--i~~l~~gldt~vg-e~G 1169 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV--------------------SYEEIVRAAKEANI---------HQF--IDSLPDKYNTRVG-DKG 1169 (1284)
T ss_dssp BHHHHHTCCCSSCCC--------------------CHHHHHHHHHHHTC---------HHH--HSSTTTGGGCBCS-TTS
T ss_pred cHHHHHhccCCCCCC--------------------CHHHHHHHHHHhCc---------HHH--HHhCccccccccC-CCC
Confidence 999999875321110 01111111111111 111 1245677899998 567
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. .|+|+|++.|... .+ ..+|+|++|++|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADLIVVIQNG 1245 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSEEEEEETB
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCEEEEEECC
Confidence 7899999999999999999999999999999999999999999998853 4788888877665 34 569999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+++++|+++++.+
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=317.34 Aligned_cols=191 Identities=25% Similarity=0.302 Sum_probs=160.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577888889999999999999999999999999999987 899875 2369999999887788999998
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+...... ... . ...++.+++.+||.+.+|+.+++ |||
T Consensus 438 ~~~~~~~-----------~~~--~-------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----------KLN--S-------------------------NFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHH-----------HHH--C-------------------------HHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC--H-------------------------HHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 8542100 000 0 00135578899999888877765 999
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC--CeEE
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE--GEIV 425 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~--G~iv 425 (1472)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd-~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999976678888887654 5678889999999986 8889
Q ss_pred EecChhHHHH
Q 045902 426 YQGPREYVLD 435 (1472)
Q Consensus 426 ~~G~~~~~~~ 435 (1472)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=313.06 Aligned_cols=191 Identities=25% Similarity=0.300 Sum_probs=158.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 477778888999999999999999999999999999987 899875 2359999999877788999998
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+...... ... + ...++.+++.+||.+..++.+++ |||
T Consensus 368 ~~~~~~~-----------~~~----------~-----------------~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDAS-----------KLN----------S-----------------NFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHH-----------HHT----------C-----------------HHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC----------H-----------------HHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 7542100 000 0 00134567888998888877765 999
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC--CeEE
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE--GEIV 425 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~--G~iv 425 (1472)
||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.| ...++..++|+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsH-d~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999987656788888765 45678889999999986 8899
Q ss_pred EecChhHHHH
Q 045902 426 YQGPREYVLD 435 (1472)
Q Consensus 426 ~~G~~~~~~~ 435 (1472)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=307.29 Aligned_cols=192 Identities=21% Similarity=0.217 Sum_probs=157.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
.|+++|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999997 89998764 358999998777778999999
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+.+..... .. .. ....+.+++.+||.+..|..+++ |||
T Consensus 351 l~~~~~~~-~~-------------------~~-----------------~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDA-LS-------------------TS-----------------SWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSST-TC-------------------TT-----------------SHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhc-cc-------------------hh-----------------HHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 97632100 00 00 00134567788998888877765 999
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC--CeEE
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE--GEIV 425 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~--G~iv 425 (1472)
||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.| ...++..++|+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsH-dl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH-DLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999998777888888765 45688889999999986 6666
Q ss_pred EecChhHHH
Q 045902 426 YQGPREYVL 434 (1472)
Q Consensus 426 ~~G~~~~~~ 434 (1472)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-31 Score=329.05 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=113.9
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHH
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW 989 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~ 989 (1472)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.|++|++. .++.++. ..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~---~~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA---YS 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH---HT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH---HH
Confidence 459999999999999999999999999996432 122 12445555531 1222221 11
Q ss_pred cCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH-----HHHHHHHH
Q 045902 990 LRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----AAAIVMRT 1064 (1472)
Q Consensus 990 l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~-----~~~~i~~~ 1064 (1472)
+..+ .+++ ...++..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .+..+.++
T Consensus 331 ~g~~----~~~~-~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~l 399 (525)
T 1tf7_A 331 WGMD----FEEM-ERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGV 399 (525)
T ss_dssp TSCC----HHHH-HHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHH
T ss_pred cCCC----HHHH-HhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHH
Confidence 1111 2222 234454444432 3479999999999999999999999999 99999999 99999999
Q ss_pred HHHHhhCCCEEEEEecCcc---------HHHHHhhCeEEEEecC
Q 045902 1065 VRNTVDTGRTVVCTIHQPS---------IDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1065 l~~l~~~g~tvi~t~H~~~---------~~~~~~~D~v~~l~~g 1099 (1472)
++.+++.|.|||+++|+.. ..+...+|++++|.+|
T Consensus 400 l~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 400 TGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 9999888999999999971 2355679999999863
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=306.90 Aligned_cols=192 Identities=25% Similarity=0.244 Sum_probs=159.0
Q ss_pred eeeeceeeEEeCC-----eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 187 EILHDVSGIVKPS-----RMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 187 ~iL~~vs~~i~~G-----e~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
.+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 5789999999998 789999999999999999999999987 7752 1 23468999999777777
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||+|++....+ +.. .+. ...+.+++.+||.+.+|..+++
T Consensus 428 ~tv~e~~~~~~~--~~~-------------------~~~-----------------~~~~~~l~~l~l~~~~~~~~~~-- 467 (608)
T 3j16_B 428 GTVRQLFFKKIR--GQF-------------------LNP-----------------QFQTDVVKPLRIDDIIDQEVQH-- 467 (608)
T ss_dssp SBHHHHHHHHCS--STT-------------------TSH-----------------HHHHHTHHHHTSTTTSSSBSSS--
T ss_pred ccHHHHHHHHhh--ccc-------------------ccH-----------------HHHHHHHHHcCChhhhcCChhh--
Confidence 899998753211 100 000 0124578899999888877765
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|++.|+ ..++..++|+|++|++
T Consensus 468 ---LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd-l~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 468 ---LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD-FIMATYLADKVIVFEG 543 (608)
T ss_dssp ---CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEECEE
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999876668888887654 5688899999999986
Q ss_pred --CeEEEecChhHHHH
Q 045902 422 --GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 --G~iv~~G~~~~~~~ 435 (1472)
|+++..|+++++..
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999988865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-28 Score=315.08 Aligned_cols=181 Identities=19% Similarity=0.282 Sum_probs=148.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCC-CCCCCCCH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQND-IHSPNVTI 980 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~-~~~~~lTv 980 (1472)
++.+|+|+||+|++|++++|+|||||||||||++|+| |+| +|.+.... ..++|++|+. ..++.+||
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~---~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE---CRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT---SCEEETTCCCCCCCTTSBH
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc---eeEEEEcccccccccCCcH
Confidence 4579999999999999999999999999999999995 222 44433211 2368999874 67788999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccc-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHH
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMK-ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1059 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~-~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~ 1059 (1472)
.|++.+ ..... ...++++++.+|+. +..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++.
T Consensus 514 ~e~l~~--~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~ 585 (986)
T 2iw3_A 514 LDFVFE--SGVGT-KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585 (986)
T ss_dssp HHHHHT--TCSSC-HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHH--hhcCH-HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 999975 11111 45678889999984 5666654 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-EEcCC
Q 045902 1060 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI-YAGPL 1108 (1472)
Q Consensus 1060 ~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~-~~g~~ 1108 (1472)
.+.+.|++ .|+|||++||+++ .+.+.||++++|.+ |+++ +.|+.
T Consensus 586 ~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 586 WLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp HHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred HHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 99999998 5899999999975 46678999999986 6765 78875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=316.57 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=132.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHH---------------------hhhcCCCCCC--ee---EEEEEEcCcc
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLM---------------------DVLAGRKTGG--YI---EGSISISGYP 955 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl---------------------~~L~g~~~~~--~~---~G~i~i~G~~ 955 (1472)
+..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999997 6666654322 11 4677787765
Q ss_pred CChhcccceeEEeccCCCC-------------------CCCCCHHHHHHHHHHcCCCch------HHH------HHHHHH
Q 045902 956 KKQETFARISGYCEQNDIH-------------------SPNVTIYESLLYSAWLRLPKD------MFV------EEVMEL 1004 (1472)
Q Consensus 956 ~~~~~~~~~~gyv~Q~~~~-------------------~~~lTv~e~l~~~~~l~~~~~------~~~------~~v~~~ 1004 (1472)
.... .++.+|+++|...+ ++.+||.|++.+...+..... ... .++++.
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 4321 23345666654332 356899999987432221110 011 123666
Q ss_pred cccccc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--CccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 045902 1005 VEMKAL-RNSLVGLPGVDGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081 (1472)
Q Consensus 1005 l~l~~~-~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~--il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~ 1081 (1472)
+++.+. .++.+ ..|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|++++++|.|||+++||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 666543 34443 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhhCeEEEEe-----cCcEEEEEcCCC
Q 045902 1082 PSIDIFEAFDELFLMK-----RGGHVIYAGPLG 1109 (1472)
Q Consensus 1082 ~~~~~~~~~D~v~~l~-----~gg~v~~~g~~~ 1109 (1472)
++ ....||++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 65 456799999993 357899999864
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=271.34 Aligned_cols=107 Identities=25% Similarity=0.296 Sum_probs=90.5
Q ss_pred HHHHHHHhCCccc-ccccccCccCCCCChHHHHHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 045902 320 TDYVLKILGLDIC-ADIMVGNEMRRGISGGQKKRVTTGEMLVGPA---KALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395 (1472)
Q Consensus 320 ~~~il~~lgL~~~-~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 395 (1472)
...+|+.+||... .+. ....|||||||||.||++|+.+| ++|+|||||+|||+.+...+++.|+++++ .|
T Consensus 785 ~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G 858 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RG 858 (916)
T ss_dssp HHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC
Confidence 3457888999742 233 34569999999999999999865 79999999999999999999999999976 58
Q ss_pred cEEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHHH
Q 045902 396 VTMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYVL 434 (1472)
Q Consensus 396 ~tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~~ 434 (1472)
.|+|++.|+. +....+|+|++| ++|+|+++|+++++.
T Consensus 859 ~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 NTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 8988877765 345669999999 899999999999985
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-26 Score=283.18 Aligned_cols=195 Identities=16% Similarity=0.083 Sum_probs=147.6
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE-E-EEEcCccCChhcccceeEEeccCCC---CCCCCCH
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG-S-ISISGYPKKQETFARISGYCEQNDI---HSPNVTI 980 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~-i~i~G~~~~~~~~~~~~gyv~Q~~~---~~~~lTv 980 (1472)
+.++|+++++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+|+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 358999999999999999999999999999999876 4589 8 999983 2456899999984 4556899
Q ss_pred HHHHHHHHHc-CCC-chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHH--HhhCCCC----ccccC-CCC
Q 045902 981 YESLLYSAWL-RLP-KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVE--LVANPSI----IFMDE-PTS 1051 (1472)
Q Consensus 981 ~e~l~~~~~l-~~~-~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~a--L~~~p~i----l~LDE-PTs 1051 (1472)
+|++ |.... +.. ....+.++++.+|+.+..+ ...|||||||||+||++ |+.+|++ |+||| ||+
T Consensus 200 ~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts 271 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSIS 271 (460)
T ss_dssp TCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGG
T ss_pred hhhh-cccccccCcchHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccc
Confidence 9988 64332 111 1123345556666655544 24799999999999999 9999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCcc--H---HHHHhhCe-----EEEEecCcEEEEEcCCCcc----hhHHHH
Q 045902 1052 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGHVIYAGPLGRQ----SHKLVE 1117 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~--~---~~~~~~D~-----v~~l~~gg~v~~~g~~~~~----~~~~~~ 1117 (1472)
|||+. ...+.+.++++ |.|+|+++|+.+ . ++.+.+|+ +++|.++|+++ .|+.... ...+.+
T Consensus 272 ~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~~ 346 (460)
T 2npi_A 272 QLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIRE 346 (460)
T ss_dssp GSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHHH
T ss_pred ccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHHH
Confidence 99999 65666666553 789999999976 3 34578899 99998345677 7765322 234556
Q ss_pred HHHh
Q 045902 1118 YFEA 1121 (1472)
Q Consensus 1118 ~f~~ 1121 (1472)
||..
T Consensus 347 ~f~g 350 (460)
T 2npi_A 347 YFYG 350 (460)
T ss_dssp HHHC
T ss_pred HhCC
Confidence 7754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=271.58 Aligned_cols=106 Identities=25% Similarity=0.261 Sum_probs=92.0
Q ss_pred HHHHHHhCCcc-cccccccCccCCCCChHHHHHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 045902 321 DYVLKILGLDI-CADIMVGNEMRRGISGGQKKRVTTGEMLVGPA---KALFMDEISTGLDSSTTFQIVRFMRQMVHITDV 396 (1472)
Q Consensus 321 ~~il~~lgL~~-~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p---~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 396 (1472)
..+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999987 56666654 9999999999999999764 99999999999999999999999999976 578
Q ss_pred EEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHHH
Q 045902 397 TMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYVL 434 (1472)
Q Consensus 397 tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~~ 434 (1472)
|+|++.|+. .+ ...+|+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 988887764 34 4689999999 799999999998875
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-24 Score=259.09 Aligned_cols=197 Identities=18% Similarity=0.156 Sum_probs=137.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC------------------------------------CeeE
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG------------------------------------GYIE 946 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~------------------------------------~~~~ 946 (1472)
..+++++|+.+.+| +++|+|||||||||||++|.+...+ ....
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35789999999999 9999999999999999999654321 0126
Q ss_pred EEEEEcCccCChh---cc-cceeEEeccCCCCCCCCCHHHHHHHHHHcCC--------------------------C---
Q 045902 947 GSISISGYPKKQE---TF-ARISGYCEQNDIHSPNVTIYESLLYSAWLRL--------------------------P--- 993 (1472)
Q Consensus 947 G~i~i~G~~~~~~---~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~--------------------------~--- 993 (1472)
|.+.+||.+.... .. ...+++++|++.+... +..+...|--+... .
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8899999987642 22 2347999998766532 44443332111000 0
Q ss_pred -----------------------------------chHHHHHHHHHccccccc----------------cc---ccCC--
Q 045902 994 -----------------------------------KDMFVEEVMELVEMKALR----------------NS---LVGL-- 1017 (1472)
Q Consensus 994 -----------------------------------~~~~~~~v~~~l~l~~~~----------------~~---~~~~-- 1017 (1472)
....+++.++.+++.... +. ....
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 001122334444332200 00 0100
Q ss_pred ----CCCCC-CCHHHHHHHHHHHHHhhCC--CCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhh
Q 045902 1018 ----PGVDG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1090 (1472)
Q Consensus 1018 ----~~~~~-LSgGqrqRl~iA~aL~~~p--~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~ 1090 (1472)
..+.. ||||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|+|||+|||++ ++.+.+
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 00112 6999999999999999999 9999999999999999999999999997 589999999996 456889
Q ss_pred CeEEEE----ecCcEEEEE
Q 045902 1091 DELFLM----KRGGHVIYA 1105 (1472)
Q Consensus 1091 D~v~~l----~~gg~v~~~ 1105 (1472)
|++++| .+ |+++..
T Consensus 363 d~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 363 HHHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp SEEEEEEEEEET-TEEEEE
T ss_pred CeEEEEEEeccC-CceEEE
Confidence 999999 65 566543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-26 Score=277.29 Aligned_cols=186 Identities=11% Similarity=0.089 Sum_probs=144.6
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-E-EEEcCeeCCCCCCCceEEEEcCCCC---CCCCCCH
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG-R-VTYCGHELTEFVPQRTCAYISQHDL---HHGEMTV 264 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 264 (1472)
.++|+.+++|++++|+||||||||||+|+|+|...++ +| + |.+||. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999876 89 8 999982 3567899999873 5567899
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+ |+..... +. ... ..++.+++.+||++..+ ...
T Consensus 200 ~eni-~~~~~~~-~~-----------~~~------------------------~~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTS-GA-----------TLL------------------------HNKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp TCTT-CSCBCBS-SC-----------CSS------------------------CCBCCEECCCCSSSGGG-------CHH
T ss_pred hhhh-ccccccc-Cc-----------chH------------------------HHHHHHHHHhCCCcccc-------hhh
Confidence 9998 7543210 00 000 00122456678876655 245
Q ss_pred CChHHHHHHHHHHH--HhCCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc-----hHHhc
Q 045902 345 ISGGQKKRVTTGEM--LVGPAKA----LFMDE-ISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP-----ETYDL 412 (1472)
Q Consensus 345 LSGGqrkRvsia~a--L~~~p~i----llLDE-ptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~-----~~~~~ 412 (1472)
|||||||||++|++ |+.+|++ |+||| ||++||.. ...+.+.+++ .+.|+|+++|++.+ ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 4444444443 46788888887662 44588
Q ss_pred cCe-----EEEec-CCeEEEecChhHHH
Q 045902 413 FDD-----IILLS-EGEIVYQGPREYVL 434 (1472)
Q Consensus 413 fD~-----iilL~-~G~iv~~G~~~~~~ 434 (1472)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=268.79 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=92.5
Q ss_pred HHHHHHHhCCcc-cccccccCccCCCCChHHHHHHHHHHHHhCC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 045902 320 TDYVLKILGLDI-CADIMVGNEMRRGISGGQKKRVTTGEMLVGP---AKALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395 (1472)
Q Consensus 320 ~~~il~~lgL~~-~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~---p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 395 (1472)
+..+++.+||.. ..++.++ .|||||||||.||++|+.+ |++|+|||||+|||..+...+.+.|+++++ .|
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 783 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPAT-----ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AG 783 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCCcc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 456889999987 3465554 4999999999999999996 799999999999999999999999999986 57
Q ss_pred cEEEEEEecCcchHHhccCeEEEe------cCCeEEEecChhHHH
Q 045902 396 VTMIISLLQPAPETYDLFDDIILL------SEGEIVYQGPREYVL 434 (1472)
Q Consensus 396 ~tvii~~~q~~~~~~~~fD~iilL------~~G~iv~~G~~~~~~ 434 (1472)
.|||++.|+. .++ ..+|+|++| ++|++++.|+++++.
T Consensus 784 ~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 784 NTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp CEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 8888877654 455 889999999 799999999998874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=247.63 Aligned_cols=237 Identities=14% Similarity=0.095 Sum_probs=148.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----------------------------------CCce
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-----------------------------------LRVS 230 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 230 (1472)
..+++++++.+.|| +++|+|||||||||||++|.+...+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35789999999999 99999999999999999997655320 0116
Q ss_pred eEEEEcCeeCCCCCC----CceEEEEcCCCCCCCCCCHHHHHHHhhhccCCC-c----hhHHHHHhhHHHHhcCCCCC--
Q 045902 231 GRVTYCGHELTEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RFELLAELSRREKDAGIKPD-- 299 (1472)
Q Consensus 231 G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~-- 299 (1472)
|++.+||.+++.... +..+++++|++.++.. +..+...|--...... . .+.......+..........
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998764221 2348999999866643 5655554422211000 0 00000000000000000000
Q ss_pred --------hhHHHHHHHHHhc-----------cccccccHHHHHHHhCCcccc----------------cc---cccC--
Q 045902 300 --------PEIDAFMKATAMS-----------GLKTSLGTDYVLKILGLDICA----------------DI---MVGN-- 339 (1472)
Q Consensus 300 --------~~~~~~~~~~~~~-----------~~~~~~~~~~il~~lgL~~~~----------------dt---~vg~-- 339 (1472)
..++...+..... ....+..++..++.++++... +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0011110000000 000111234456667665410 00 1110
Q ss_pred ----ccCCC-CChHHHHHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhc
Q 045902 340 ----EMRRG-ISGGQKKRVTTGEMLVGPA--KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL 412 (1472)
Q Consensus 340 ----~~~~g-LSGGqrkRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~ 412 (1472)
...+. +||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|++++ .+.|+|++.|++ ++.+.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~~~ 361 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIAAR 361 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHHTT
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHHhh
Confidence 11111 6999999999999999999 9999999999999999999999999987 378999888875 56789
Q ss_pred cCeEEEe----cCCeEEEec
Q 045902 413 FDDIILL----SEGEIVYQG 428 (1472)
Q Consensus 413 fD~iilL----~~G~iv~~G 428 (1472)
+|++++| .+|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-24 Score=238.74 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=98.9
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++.+|+|| ++||+++|+||||||||||+++|+|. + +.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 446799996 89999999999999999999999998 5 33566532111111123456789999976
Q ss_pred HHHH-HHHH----HcCC-CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 981 YESL-LYSA----WLRL-PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 981 ~e~l-~~~~----~l~~-~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
+||+ .+.. .+.. .....++++++. + + |||||++|||||+.+|++|+|||||+|
T Consensus 76 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts~-- 134 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT-- 134 (208)
T ss_dssp ----CTTTHHHHHHHTTTSCTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC--
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 3444 2210 1111 111233333332 1 2 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
++..+++.|+++ ++|+||| +||+++
T Consensus 135 --~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 135 --TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp --CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred --cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 888899999998 6789999 999965
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=233.23 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=74.3
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1020 VDGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~------~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
+..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|+|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999888999999999965 47789999
Q ss_pred EEEecCcEEEE
Q 045902 1094 FLMKRGGHVIY 1104 (1472)
Q Consensus 1094 ~~l~~gg~v~~ 1104 (1472)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99986 67653
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-22 Score=216.47 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=103.4
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC-CCCCHHHHHHH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS-PNVTIYESLLY 986 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~-~~lTv~e~l~~ 986 (1472)
|||+++++||+++|+||||||||||++++.+-.. .+++ . ...|+++|+.... ..-++.+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764211 1111 1 1236777764321 01112222211
Q ss_pred HHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH----------
Q 045902 987 SAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---------- 1056 (1472)
Q Consensus 987 ~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~---------- 1056 (1472)
. . +.....+.....+.. ...|+|||||++||++|+.+|++|+|||||+|||+.
T Consensus 65 ~----------~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~ 127 (171)
T 4gp7_A 65 I----------V-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVE 127 (171)
T ss_dssp H----------H-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCC
T ss_pred H----------H-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCC
Confidence 1 1 111122333333322 246999999999999999999999999999999999
Q ss_pred ------HHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCe
Q 045902 1057 ------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1092 (1472)
Q Consensus 1057 ------~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~ 1092 (1472)
....+++.|+++.++|.|+|+++|+++ ..+.+++
T Consensus 128 ~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 128 EYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred HHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 568899999988777999999999854 3444443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-21 Score=226.57 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE--
Q 045902 1020 VDGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 1093 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~----~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v-- 1093 (1472)
+..||+|||||++||++|+ .+|++|+|||||++||+..+..+.+.|+++. +|.|||+++|++. +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 5789999999999999999999999999985 5899999999964 67789986
Q ss_pred EEEecCcEEEEEcCC
Q 045902 1094 FLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1094 ~~l~~gg~v~~~g~~ 1108 (1472)
++|.+|...+.....
T Consensus 294 v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 294 VTMVNGVSAIVPVEV 308 (322)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEEeCCEEEEEEEEc
Confidence 788877666666654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-23 Score=247.79 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=135.6
Q ss_pred ceeeccceeEEeCCe--------------------EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhccc
Q 045902 903 LQLLQDVSGAFRPGV--------------------LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFA 962 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge--------------------~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~ 962 (1472)
+.+|++||+++++|+ ++||+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----
Confidence 468999999999999 9999999999999999999998763 4799999886542
Q ss_pred ceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH--HHHHHHHHHHHhh-
Q 045902 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE--QRKRLTIAVELVA- 1039 (1472)
Q Consensus 963 ~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG--qrqRl~iA~aL~~- 1039 (1472)
+ .+|++|++ .++.+|+.|++.+.. ....++++++.+++.+..... .||+| ||||+.||++|+.
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~-----~~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~la~aL~~~ 174 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS-----TNFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDIAKAISMM 174 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG-----SSCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHHHHHHHHT
T ss_pred e-eEEecccc-ccCCeeehHhhcccc-----hHHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHHHHHHHhc
Confidence 1 27899985 567889988875432 123477888888887653222 28999 9999999999999
Q ss_pred ---------CCCCccccCCCCCCCHHHHHHHHHHHHHHh-----hC----CCEEEEEecCccH-HHHHhhCeEE
Q 045902 1040 ---------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFEAFDELF 1094 (1472)
Q Consensus 1040 ---------~p~il~LDEPTsgLD~~~~~~i~~~l~~l~-----~~----g~tvi~t~H~~~~-~~~~~~D~v~ 1094 (1472)
+|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++-+++|++.
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999999999999984 22 3678899998652 2555666654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-22 Score=220.12 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=97.0
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
.++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 345789996 89999999999999999999999999 775 677632111111112246799999975
Q ss_pred HHHHH-HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 264 VRETL-DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 264 V~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
+||+ .+.... + ..+. ..... ..++.+++. |
T Consensus 76 -~enl~~~~~~~------~---~~~~------~~~~~------------------~~~~~~l~~-g-------------- 106 (208)
T 3b85_A 76 -NEKIDPYLRPL------H---DALR------DMVEP------------------EVIPKLMEA-G-------------- 106 (208)
T ss_dssp -----CTTTHHH------H---HHHT------TTSCT------------------THHHHHHHT-T--------------
T ss_pred -HHHHHHHHHHH------H---HHHH------HhccH------------------HHHHHHHHh-C--------------
Confidence 6666 332100 0 0000 00000 012223332 2
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 406 (1472)
+ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ + .+.|+| +.|++.
T Consensus 107 --l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 107 --I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp --S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred --C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 3 999999999999999999999999999 888999999887 3 478888 777653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-20 Score=217.96 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=74.1
Q ss_pred cCCCCChHHHHHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 341 MRRGISGGQKKRVTTGEMLV------GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+ .|.|+|++.|++. ..+.+|
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 44569999999999999999 79999999999999999999999999999875 5889999888763 467899
Q ss_pred eEEEecCCeEEE
Q 045902 415 DIILLSEGEIVY 426 (1472)
Q Consensus 415 ~iilL~~G~iv~ 426 (1472)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999974
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.7e-20 Score=214.92 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=71.0
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE-
Q 045902 342 RRGISGGQKKRVTTGEMLV----GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI- 416 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i- 416 (1472)
+..|||||||||+||++|+ .+|++++|||||++||+.+...+.+.|+++. .+.++|++.|.+ ++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEE
Confidence 3459999999999999996 7899999999999999999999999999984 367888887774 578899987
Q ss_pred -EEecCCeEE-EecChhH
Q 045902 417 -ILLSEGEIV-YQGPREY 432 (1472)
Q Consensus 417 -ilL~~G~iv-~~G~~~~ 432 (1472)
++|.+|... .....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 788888653 3344443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-20 Score=202.64 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=99.0
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~ 994 (1472)
.++|+||||||||||+++|+|... |.++|.+... ...++.+||++|+. ++.+++ + +.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~~~ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFFTS 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcCCc
Confidence 589999999999999999999753 2233332211 12346789999975 222222 0 0000000
Q ss_pred hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHH-----HhhCCCCccccC--CCCCCCHHHHHHHHHHHHH
Q 045902 995 DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMRTVRN 1067 (1472)
Q Consensus 995 ~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~a-----L~~~p~il~LDE--PTsgLD~~~~~~i~~~l~~ 1067 (1472)
....+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....+.+.+++
T Consensus 67 -------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 67 -------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 0111221 34699999999999996 999999999999 9999999999998888865
Q ss_pred HhhCCCEEEEEec---CccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1068 TVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1068 l~~~g~tvi~t~H---~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
.+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 129 ---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 129 ---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp ---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred ---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 4778999986 433 45566776 3466665443
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-22 Score=223.15 Aligned_cols=177 Identities=13% Similarity=0.067 Sum_probs=113.3
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
...+++| .+|++||+++|+||||||||||+++|+|..+ .+.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3567888 6999999999999999999999999999764 233333333332221 2245689999998777777877
Q ss_pred HHHHHH----H--Hc-CCCchHH---HHHH------HHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCcc
Q 045902 982 ESLLYS----A--WL-RLPKDMF---VEEV------MELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1045 (1472)
Q Consensus 982 e~l~~~----~--~l-~~~~~~~---~~~v------~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~ 1045 (1472)
|++... . .+ ..+.... +++. ++.+++.++++... +.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 765321 1 11 1111111 2222 23333333333332 2466 8899999999
Q ss_pred ccCCCCCC----CHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 045902 1046 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1100 (1472)
Q Consensus 1046 LDEPTsgL----D~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg 1100 (1472)
|||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++.+.+|++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999974 5899999999986 5788999999996544
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-21 Score=235.40 Aligned_cols=172 Identities=14% Similarity=0.150 Sum_probs=130.5
Q ss_pred cceeeeceeeEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC
Q 045902 185 KLEILHDVSGIVKPSR--------------------MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge--------------------~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~ 244 (1472)
.+.+|+|+|+.+++|+ +++|+||||||||||+|+|+|..+++ +|+|.++|.+.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---
Confidence 3568999999999999 99999999999999999999999887 899999987653
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHH
Q 045902 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVL 324 (1472)
Q Consensus 245 ~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 324 (1472)
+ .+|++|++ .++.+|+.||+.+... +...+..+
T Consensus 109 -~--~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L 141 (413)
T 1tq4_A 109 -M--ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYL 141 (413)
T ss_dssp -C--CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHH
T ss_pred -e--eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHH
Confidence 1 27899985 5778899888744210 01134567
Q ss_pred HHhCCcccccccccCccCCCCChH--HHHHHHHHHHHhC----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 045902 325 KILGLDICADIMVGNEMRRGISGG--QKKRVTTGEMLVG----------PAKALFMDEISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 325 ~~lgL~~~~dt~vg~~~~~gLSGG--qrkRvsia~aL~~----------~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
+.++|.+.. ..+ . +||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 142 ~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 142 EKMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp HHTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 778876542 221 2 9999 9999999999999 9999999999999999999999999998852
Q ss_pred ----hC----CcEEEEEEecCcc-hHHhccCeE
Q 045902 393 ----IT----DVTMIISLLQPAP-ETYDLFDDI 416 (1472)
Q Consensus 393 ----~~----~~tvii~~~q~~~-~~~~~fD~i 416 (1472)
.. ..+++++.|.... .+-+++|+|
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 22 2456666654432 244555555
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-22 Score=230.09 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=115.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+|. +|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEecCcccccc-ccHH
Confidence 35899999999999999999999999999999999987 48873 46778776665 4888
Q ss_pred H-HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 266 E-TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 266 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
| |+.|.... +. . ....++.+ |++..| +..
T Consensus 171 ~~ni~~~~~~-------------~~-----------~------------------~~~~i~~~-L~~gld-------g~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------A------------------CWRYFDTY-LRNALD-------GYP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------H------------------HHHHHHHT-TTGGGG-------TCC
T ss_pred HHhhccCccc-------------cH-----------H------------------HHHHHHHH-hHccCC-------ccC
Confidence 7 77653110 00 0 01122222 333333 346
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||| |||++.+|+||+ ||+||+.++..|.. + +| ..++.+.+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999988752 1 12 22345689999 9999999
Q ss_pred EEecChhHHHHHHHh
Q 045902 425 VYQGPREYVLDFFES 439 (1472)
Q Consensus 425 v~~G~~~~~~~~F~~ 439 (1472)
++.|+++++..+|..
T Consensus 256 v~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 256 PFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 999999998666654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-20 Score=195.87 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEEEecC
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSS----------------TTFQIVRFMRQMVHITDVTMIISLLQP 405 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~----------------t~~~i~~~L~~l~~~~~~tvii~~~q~ 405 (1472)
.||||||||+||+++..+|++++|||||++||+. ...++.+.|+++.+. |.|+|++.|.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 568889999888765 88999888764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-20 Score=199.33 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCch
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 280 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 280 (1472)
.++|+||||||||||+++|+|.+. +.+.|... .+......++.++|++|+. |+.+++ ++ +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~----- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF----- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ETT-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hhc-----
Confidence 579999999999999999999874 22334221 1111101245689999964 222222 10 000
Q ss_pred hHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHH--
Q 045902 281 FELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM-- 358 (1472)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~a-- 358 (1472)
..+ +...+ ..+..||||||||++||++
T Consensus 64 ---------------~~~-------------------------------~~~~~-----~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 64 ---------------FTS-------------------------------KKLVG-----SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp ---------------CCC-------------------------------SSEET-----TEEECHHHHHHHHHHHHHHHH
T ss_pred ---------------CCc-------------------------------ccccc-----ccccCcCHHHHHHHHHHhhcc
Confidence 000 01112 2334599999999999996
Q ss_pred ---HhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe--cCcchHHhccCeEEEecCCeEEE
Q 045902 359 ---LVGPAKALFMDE--ISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL--QPAPETYDLFDDIILLSEGEIVY 426 (1472)
Q Consensus 359 ---L~~~p~illLDE--ptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~--q~~~~~~~~fD~iilL~~G~iv~ 426 (1472)
++.+|++++||| ||++||+.....+.+.+++ .+.|+|++.| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999888865 4667888887 666777778887 5567665
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-22 Score=220.40 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=99.0
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----ETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----~~~~~~~gyv~Q~~~~~~~l 978 (1472)
..-|+||||++++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 346999999999999999999999999999999999762 67888 665321 12345679999987655433
Q ss_pred CH-HHHHH---HHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHH-----HHHHhhCCCCccccCC
Q 045902 979 TI-YESLL---YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTI-----AVELVANPSIIFMDEP 1049 (1472)
Q Consensus 979 Tv-~e~l~---~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~i-----A~aL~~~p~il~LDEP 1049 (1472)
+. .+++. +...........++++++..+.. +.+ ..||||||||++| +++++.+|++++||||
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred hhccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 21 11111 11111111223456666654432 111 2589999999999 8999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q 045902 1050 TSGLDARAAAIVMRTVRNTV 1069 (1472)
Q Consensus 1050 TsgLD~~~~~~i~~~l~~l~ 1069 (1472)
|+++|..+...+.+.++++.
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 99999999999988888764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-20 Score=213.16 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=97.9
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc-hH
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK-DM 996 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-~~ 996 (1472)
.+||+||||||||||+|+|+|... +.+|+|.++|.+......++.++|++|++.+++.+||.|++.|+....... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 479999999999999999999766 458999999988755555678999999999999999999998875433211 12
Q ss_pred HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 045902 997 FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076 (1472)
Q Consensus 997 ~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi 1076 (1472)
.+.+.++ ..+.+... ..||||||||++|||+++. ++||||||+|||+.. .+.++++.+. .+||
T Consensus 82 ~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI 144 (270)
T 3sop_A 82 PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNII 144 (270)
T ss_dssp HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEE
T ss_pred HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEE
Confidence 2233222 34444443 3699999999999999876 999999999999987 4455666555 8999
Q ss_pred EEecCc
Q 045902 1077 CTIHQP 1082 (1472)
Q Consensus 1077 ~t~H~~ 1082 (1472)
+++|..
T Consensus 145 ~Vi~K~ 150 (270)
T 3sop_A 145 PVIAKA 150 (270)
T ss_dssp EEETTG
T ss_pred EEEecc
Confidence 999964
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-20 Score=212.91 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=118.5
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeEEeccCCC-CC
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TF--ARISGYCEQNDI-HS 975 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~--~~~~gyv~Q~~~-~~ 975 (1472)
++++|+.+++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4678999999999999999999999999999997652 369999999876421 22 235899999988 88
Q ss_pred CCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--CccccCCCCCC
Q 045902 976 PNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGL 1053 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~--il~LDEPTsgL 1053 (1472)
|.+|++|++.+...... + ..+++.+|+.+..+... ..|| |||++||++|+.+|+ +|+|| ||+||
T Consensus 168 ~~~~v~e~l~~~~~~~~--d---~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGY--D---VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHHHHTTC--S---EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHHHHcCC--c---chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 88999999987542211 1 12445566665555443 3588 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHh-hCCCEEEEEecC
Q 045902 1054 DARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1081 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~-~~g~tvi~t~H~ 1081 (1472)
|+... ++++. +.|.|+|++||.
T Consensus 234 D~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 234 NMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp GGHHH------HHHHHHHTCCCEEEEECC
T ss_pred CHHHH------HHHHHHhcCCCEEEEeCC
Confidence 98754 24454 348999999994
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-19 Score=208.34 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=129.9
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---------CCceEEEEcCCCC-C
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---------PQRTCAYISQHDL-H 258 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~ 258 (1472)
++++|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999998876 799999998865421 1235899999988 8
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+|.+||+|++.++.. .+. + ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~-~~~---------------------d---------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKE-EGY---------------------D---------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHH-TTC---------------------S---------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHH-cCC---------------------c---------------------chHHhcCCCCcchhHHHH
Confidence 889999999987421 000 0 012345677666665554
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc--------ch
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAK--ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA--------PE 408 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~--illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~--------~~ 408 (1472)
. || |||++||++++.+|+ +|+|| ||+|||+.+. ++++.+..+.|+++..|-+. ..
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 3 88 999999999999999 99999 9999999854 24444445788888776322 12
Q ss_pred HHhccCeEEEecCCeE
Q 045902 409 TYDLFDDIILLSEGEI 424 (1472)
Q Consensus 409 ~~~~fD~iilL~~G~i 424 (1472)
.....+.|..+..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 2345667888888864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-19 Score=209.80 Aligned_cols=131 Identities=20% Similarity=0.155 Sum_probs=105.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
.+++++|+.+++|++++|+||||||||||+++|+|..++ .+|.|.++|.+... ...++.++++.
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe-------------
Confidence 389999999999999999999999999999999998764 48999999864211 11222233332
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
+ |||+||++||++|..+|++|+|||||+ ..++
T Consensus 224 ---------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~ 255 (330)
T 2pt7_A 224 ---------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAY 255 (330)
T ss_dssp ---------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHH
T ss_pred ---------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHH
Confidence 1 799999999999999999999999998 2356
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|
T Consensus 256 ~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 256 DFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp HHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 777777543458999999987 67789999999865
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-21 Score=224.96 Aligned_cols=158 Identities=12% Similarity=0.129 Sum_probs=113.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
..+|+|||++|++|+++||+||||||||||+++|+|.. +|+|. +|++|++.++. .|++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~---------------~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL---------------SFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE---------------CGGGTTSGGGG-GGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE---------------EEecCcccccc-ccHHH
Confidence 45899999999999999999999999999999999976 46663 45677666554 36665
Q ss_pred -HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 983 -SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 983 -~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
|+.+.. .....+.+.++.+ +.+..| ...|||||||| ||||+.+|+||+ ||+||+.++..+
T Consensus 172 ~ni~~~~----~~~~~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 172 TRAALVD----DATHACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp CSCEEEE----EECHHHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred HhhccCc----cccHHHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 654421 0112233444442 222122 24799999999 999999999999 999999998887
Q ss_pred HHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHHhC
Q 045902 1062 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAV 1122 (1472)
Q Consensus 1062 ~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~~~ 1122 (1472)
.. .+|+++ .++.+|++ +|++ |++++.|+. +++..+|..+
T Consensus 233 ~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 233 LY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp GG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH----HHHHHHHHHH
Confidence 52 188876 45789999 8875 789988875 3455666654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-20 Score=224.20 Aligned_cols=175 Identities=16% Similarity=0.120 Sum_probs=137.0
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc---cCCh--------hcccceeEEecc
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY---PKKQ--------ETFARISGYCEQ 970 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~---~~~~--------~~~~~~~gyv~Q 970 (1472)
+.++|+++ +.+.+|++++|+||||||||||+++|+|...+ ..|.|.++|. +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 46799999 99999999999999999999999999998764 4899999997 3321 235677899999
Q ss_pred C-CCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC
Q 045902 971 N-DIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1049 (1472)
Q Consensus 971 ~-~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP 1049 (1472)
+ +..++.+|+.+++.+.+....... -....+.|. ...||+|| ||++|| +.+|++
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~~---------~~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~------ 275 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDRG---------QHVLLIMDS------LTRYAMAQ-REIALA---IGEPPA------ 275 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTT---------CEEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCC---------CCHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc------
Confidence 5 556678899999887653211000 001111122 24699999 999999 888888
Q ss_pred CCCCCHHHHHHHHHHHHHHhh---C-CC-----EEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1050 TSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1050 TsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|+|||+.+...+.+.++++.+ + |. ||++++||.+ ...+|++++|.+ |+++..|++
T Consensus 276 t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999876 3 64 9999999987 467899999975 899988754
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-19 Score=209.71 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=119.3
Q ss_pred ccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeEEeccCCC-CCC
Q 045902 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TF--ARISGYCEQNDI-HSP 976 (1472)
Q Consensus 907 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 976 (1472)
+++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 468889999999999999999999999999997653 369999999876421 12 345899999988 888
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--CccccCCCCCCC
Q 045902 977 NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLD 1054 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~--il~LDEPTsgLD 1054 (1472)
..|++|++.+...... + ..+++.+|+.+..+... ..|| |||++||++|+.+|+ +|+|| ||+|||
T Consensus 226 ~~tv~e~l~~~~~~~~--d---~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD 291 (359)
T 2og2_A 226 ATVLSKAVKRGKEEGY--D---VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLN 291 (359)
T ss_dssp HHHHHHHHHHHHHTTC--S---EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGG
T ss_pred hhhHHHHHHHHHhCCC--H---HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCC
Confidence 8999999987643211 1 12445566665555443 3588 999999999999999 99999 999999
Q ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEecC
Q 045902 1055 ARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1081 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~-~g~tvi~t~H~ 1081 (1472)
+.... +++.+ .|.|+|++||.
T Consensus 292 ~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 292 MLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp GHHHH------HHHHHHTCCCEEEEESC
T ss_pred HHHHH------HHHHHhcCCeEEEEecC
Confidence 87653 34443 48999999994
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-19 Score=203.50 Aligned_cols=146 Identities=15% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCch
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 280 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 280 (1472)
.++|+||||||||||+|+|+|...++ +|+|.++|+++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47899999999999999999998887 89999999987654445789999999999999999999988653321100
Q ss_pred hHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHh
Q 045902 281 FELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360 (1472)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~ 360 (1472)
...+..+.. ....+...+ .|||||||||++||+++
T Consensus 80 ------------------~~~i~~~~~----------------------~~~~~~~~~-----~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ------------------WEPIEKYIN----------------------EQYEKFLKE-----EVNIARKKRIPDTRVHC 114 (270)
T ss_dssp ------------------SHHHHHHHH----------------------HHHHHHHHH-----HSCTTCCSSCCCCSCCE
T ss_pred ------------------HHHHHHHHH----------------------HHHHhhhHH-----hcCcccchhhhhheeee
Confidence 001111110 111222222 49999999999999987
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
. ++++|||+.|||+.. .+.++.+.+. .++|+.++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEec
Confidence 5 999999999999987 4455555442 677776653
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-17 Score=192.15 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=68.7
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1020 VDGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1020 ~~~LSgGqrq------Rl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.+.|.|||++||++. +.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4579999999 677788888899999999999999999999999999999877899999999954 67889999
Q ss_pred EEEe
Q 045902 1094 FLMK 1097 (1472)
Q Consensus 1094 ~~l~ 1097 (1472)
+.|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=196.14 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=73.5
Q ss_pred CccCC-CCChHHHHHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch
Q 045902 339 NEMRR-GISGGQKKRVTTGEMLV---------GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE 408 (1472)
Q Consensus 339 ~~~~~-gLSGGqrkRvsia~aL~---------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 408 (1472)
+...+ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++. .|+|++.| +. +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c
Confidence 33455 69999999999999999 8999999999999999999999999998752 46666555 43 3
Q ss_pred HHhccCeEEEecCCeEEEecChhHH
Q 045902 409 TYDLFDDIILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 409 ~~~~fD~iilL~~G~iv~~G~~~~~ 433 (1472)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8899999999999999998765
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-18 Score=203.08 Aligned_cols=174 Identities=15% Similarity=0.191 Sum_probs=130.1
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---------CCceEEEEcCCCC-CC
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---------PQRTCAYISQHDL-HH 259 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 259 (1472)
+++|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999998876 799999998865421 1235899999988 88
Q ss_pred CCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccC
Q 045902 260 GEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGN 339 (1472)
Q Consensus 260 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 339 (1472)
|.+||+|++.++... +. + ..+++.+|+.+..+..+.
T Consensus 225 p~~tv~e~l~~~~~~-~~---------------------d---------------------~~lldt~Gl~~~~~~~~~- 260 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY---------------------D---------------------VVLCDTSGRLHTNYSLME- 260 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC---------------------S---------------------EEEEECCCCSSCCHHHHH-
T ss_pred hhhhHHHHHHHHHhC-CC---------------------H---------------------HHHHHhcCCChhhhhHHH-
Confidence 899999999875210 00 0 012345666666555554
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc--------chH
Q 045902 340 EMRRGISGGQKKRVTTGEMLVGPAK--ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA--------PET 409 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia~aL~~~p~--illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~--------~~~ 409 (1472)
.|| |||++||++++.+|+ +|+|| ||+|||+.+.. +++.+..+.|+|+..|-+. ...
T Consensus 261 ----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 261 ----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp ----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred ----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 388 999999999999999 99999 99999998653 3444445788888776321 122
Q ss_pred HhccCeEEEecCCeE
Q 045902 410 YDLFDDIILLSEGEI 424 (1472)
Q Consensus 410 ~~~fD~iilL~~G~i 424 (1472)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 345667777777764
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-18 Score=196.24 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=115.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE-EEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG-SISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
..+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.........+.+.++.+... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 4589999999999999999999999999999999996542 235 56554433333333333333333321 1223
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHH-HHHHHHHHHHhhCCCCccccCCCC---C---CC
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS---G---LD 1054 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq-rqRl~iA~aL~~~p~il~LDEPTs---g---LD 1054 (1472)
+++.....-.......++++++...+ .+.+. ...+|.+| +||+. |+++..+|++|++||||+ + +|
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~~l-~i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d 167 (296)
T 1cr0_A 96 DSLKREIIENGKFDQWFDELFGNDTF-HLYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESD 167 (296)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHSSSCE-EEECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----------
T ss_pred cccccCCCCHHHHHHHHHHHhccCCE-EEECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCC
Confidence 33432210000000112222221111 11111 12588998 66666 999999999999999999 5 56
Q ss_pred H-HHHHHHHHHHHHHhhC-CCEEEEEecCcc-H--------------------HHHHhhCeEEEEecC
Q 045902 1055 A-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1055 ~-~~~~~i~~~l~~l~~~-g~tvi~t~H~~~-~--------------------~~~~~~D~v~~l~~g 1099 (1472)
. .....+++.|++++++ |+|||+++|+.. . .+.+.+|++++|.+|
T Consensus 168 ~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 168 ERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 6678899999999765 999999999952 1 466789999999874
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-17 Score=192.46 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCe
Q 045902 1022 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1092 (1472)
Q Consensus 1022 ~LSgGqrqRl~iA~aL~---------~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~ 1092 (1472)
.||||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. +. .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~----~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP----GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----cCCE
Confidence 69999999999999999 8999999999999999999999999998873 799999994 32 7899
Q ss_pred EEEEecCcEEEEEcCCC
Q 045902 1093 LFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1093 v~~l~~gg~v~~~g~~~ 1109 (1472)
+++|.+ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999985 7898888764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-20 Score=207.95 Aligned_cols=174 Identities=14% Similarity=0.083 Sum_probs=105.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----CceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 261 (1472)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ + |+|.+ |.+.....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 77888 766543322 3467899997655543
Q ss_pred CC-HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 262 MT-VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 262 lT-V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
++ +.+++.+. ...+ ..+.. +..+ ++.+++... ...+.
T Consensus 83 ~~~~~~~l~~~-~~~~--~~~g~--------------~~~~------------------i~~~l~~~~-----~~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYAN--NFYGT--------------LKSE------------------YDKAKEQNK-----ICLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EETT--EEEEE--------------EHHH------------------HHHHHHTTC-----EEEEE--
T ss_pred hhhccchhhhh-hccc--ccCCC--------------cHHH------------------HHHHHhCCC-----cEEEE--
Confidence 32 11111110 0000 00000 0000 112222211 11111
Q ss_pred cCCCCChHHHHHHHH-----HHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 341 MRRGISGGQKKRVTT-----GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsi-----a~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|++.... .+ +.| ...+|.
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~ 187 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNL 187 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSE
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCE
Confidence 3599999999999 89999999999999999999999999999999876543 22 111 246788
Q ss_pred EEEecC
Q 045902 416 IILLSE 421 (1472)
Q Consensus 416 iilL~~ 421 (1472)
|+++++
T Consensus 188 iiv~~~ 193 (218)
T 1z6g_A 188 SIINDD 193 (218)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 877754
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-19 Score=214.95 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=137.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCe---eCCCCC--------CCceEEEEc
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH---ELTEFV--------PQRTCAYIS 253 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~~~~--------~~~~~~yv~ 253 (1472)
...+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++. .++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 35689999 999999999999999999999999999999887 899999998 454321 246799999
Q ss_pred CC-CCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccc
Q 045902 254 QH-DLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDIC 332 (1472)
Q Consensus 254 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 332 (1472)
|+ +..++.+||.+|+.+.++... .. +......
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~--------------~~--------------------~~~v~~~------------- 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFR--------------DR--------------------GQHVLLI------------- 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHH--------------TT--------------------TCEEEEE-------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH--------------hC--------------------CCCHHHH-------------
Confidence 95 556778899999987543210 00 0000000
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH---hCCc-----EEEEEEec
Q 045902 333 ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH---ITDV-----TMIISLLQ 404 (1472)
Q Consensus 333 ~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~---~~~~-----tvii~~~q 404 (1472)
.| ....+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+ ..|. |+++..|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 01 123499999 999999 888887 999999999999999998865 2353 66666665
Q ss_pred CcchHHhccCeEEEecCCeEEEecChhHH
Q 045902 405 PAPETYDLFDDIILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 405 ~~~~~~~~fD~iilL~~G~iv~~G~~~~~ 433 (1472)
.. ...+|++++|.+|+++..|+..++
T Consensus 317 l~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 54 467899999999999999987665
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=198.87 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=70.5
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1020 VDGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1020 ~~~L-SgGqrqRl~iA~aL~~~p--~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ |+|||++||++. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3457 999999999999999999 99999999999999999999999999987 899999999965 55679999999
Q ss_pred ecC
Q 045902 1097 KRG 1099 (1472)
Q Consensus 1097 ~~g 1099 (1472)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-17 Score=194.46 Aligned_cols=133 Identities=15% Similarity=0.196 Sum_probs=103.4
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
+++++|+.+++|++++|+|||||||||||++|+|.++++ +|.|+++|.+ +... ++ +
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~-------~~---~--------- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVF-------KH---H--------- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCC-------SS---C---------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--cccc-------cc---c---------
Confidence 789999999999999999999999999999999999987 8999998853 1100 00 0
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+ . .. + .+ .| |
T Consensus 216 -----~-~-----------------------------------------~i---------~-------~~-----~g--g 225 (330)
T 2pt7_A 216 -----K-N-----------------------------------------YT---------Q-------LF-----FG--G 225 (330)
T ss_dssp -----S-S-----------------------------------------EE---------E-------EE-----CB--T
T ss_pred -----h-h-----------------------------------------EE---------E-------EE-----eC--C
Confidence 0 0 00 0 00 01 8
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
||+||++||+||..+|+++++||||+. ++.+.|+.+.. .+.|++++.|.++ +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35667776643 3457888888765 7788999999988863
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-19 Score=200.39 Aligned_cols=190 Identities=11% Similarity=0.073 Sum_probs=111.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
..+++| ..+++||+++|+||||||||||+++|+|.++ .+ .+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i--~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NL--HFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST-TC--EECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ce--EEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 467888 6899999999999999999999999999985 22 3332232322211 1235689999998888888888
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
|++.+.....+....+.. .+. ++++..+ . +...-. .++.+|+.+.++..+ +.|
T Consensus 83 ~~l~~~~~~~~n~~~~g~----~~~----------~~~~~~~--~--~~~~~~----~l~~~gl~~~~~~~~-----~~l 135 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGT----LAQ----------PVRAAAA--T--GVPVLI----EVDLAGARAIKKTMP-----EAV 135 (207)
T ss_dssp TCEEEEEEEGGGTEEEEE----EHH----------HHHHHHH--H--TCCEEE----ECCHHHHHHHHHHCT-----TSE
T ss_pred CCceeehhhcCchhhcCC----cHH----------HHHHHHH--c--CCeEEE----EeCHHHHHHHHHhcC-----CcE
Confidence 876432211110000000 000 0000000 0 000000 022233333333333 236
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGL----DSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgL----Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+.|++++.| ...++..++|+|++|.
T Consensus 136 S-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH-dl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 136 T-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR-RLESACAELVSLLVGT 202 (207)
T ss_dssp E-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS-SHHHHHHHHHHHHC--
T ss_pred E-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC-CHHHHHHHHHHHHHhc
Confidence 6 889999999999999998 7789999999999997666788887765 5678999999999984
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-18 Score=198.02 Aligned_cols=128 Identities=9% Similarity=-0.014 Sum_probs=95.1
Q ss_pred ceee-EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 191 DVSG-IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 191 ~vs~-~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
|++. .+++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 3444 37899999999999999999999999998764 332 358999999999988 9999985
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
+... .+.... .+.+ ....+++.++ ....++.+. .+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d~~---------------~~~~~L~~l~-~~~~~~~~~-----~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YNRR---------------ALMRFVTSVK-SGSDYACAP-----VYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BCHH---------------HHHHHHHHHH-TTCSCEEEE-----EEETTT
T ss_pred HHHh-cCCChH-------------------HHHH---------------HHHHHHHHhC-CCcccCCcc-----cCChhh
Confidence 4211 111000 0000 1233566666 444445444 499999
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCH
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDS 377 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs 377 (1472)
|||+++|++++.+|+|+|+|||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999997
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-18 Score=214.27 Aligned_cols=167 Identities=20% Similarity=0.136 Sum_probs=115.7
Q ss_pred cceeecccee-EEeCCeEEEEEcCCCCChhHHHhh--hcCCCCCCeeEEEEEEcCccCCh--hcccceeEEeccCCCCCC
Q 045902 902 RLQLLQDVSG-AFRPGVLTALVGVSGAGKTTLMDV--LAGRKTGGYIEGSISISGYPKKQ--ETFARISGYCEQNDIHSP 976 (1472)
Q Consensus 902 ~~~iL~~vs~-~i~~Ge~~al~G~nGaGKTTLl~~--L~g~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~~~~~~ 976 (1472)
+..+|++||+ .+++|++++|+||||||||||+++ ++|..++ .+|.|.++|.+... ...++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3568999999 999999999999999999999999 6787653 37999999987432 123456799998754211
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCCCccccCCCC----
Q 045902 977 NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV-ANPSIIFMDEPTS---- 1051 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~-~~p~il~LDEPTs---- 1051 (1472)
. +.+ ..........++++.+++.++ .-.+..+|- .+|++++|||||+
T Consensus 102 ~------l~~---~~~~~~~~~~~~l~~~~l~~~-------------------~~~~~~~LS~g~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 102 K------LFI---LDASPDPEGQEVVGGFDLSAL-------------------IERINYAIQKYRARRVSIDSVTSVFQQ 153 (525)
T ss_dssp S------EEE---EECCCCSSCCSCCSSHHHHHH-------------------HHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred c------EEE---EecCcccchhhhhcccCHHHH-------------------HHHHHHHHHHcCCCEEEECCHHHHHHh
Confidence 1 100 000000000111222222222 223333332 4688999999998
Q ss_pred -CCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHH--------HHHhhCeEEEEec
Q 045902 1052 -GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID--------IFEAFDELFLMKR 1098 (1472)
Q Consensus 1052 -gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~--------~~~~~D~v~~l~~ 1098 (1472)
+||+..+..+.++++++++.|+|||+++|+++.. ....+|++++|.+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 5699999999999999988899999999998631 2345999999986
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=178.26 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=68.6
Q ss_pred cCCCCChHHHH------HHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 341 MRRGISGGQKK------RVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 341 ~~~gLSGGqrk------Rvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
....||||||| |+++|++++.+|++|+|||||+|||+.++..+.+.|+++.. .+.|++++.|+ +++.+.+|
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~--~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHD--EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESC--GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECh--HHHHHhCC
Confidence 34569999999 67788899999999999999999999999999999999865 46788888876 46789999
Q ss_pred eEEEec--CCe
Q 045902 415 DIILLS--EGE 423 (1472)
Q Consensus 415 ~iilL~--~G~ 423 (1472)
++++|. +|.
T Consensus 322 ~~~~l~~~~g~ 332 (339)
T 3qkt_A 322 HVIRISLENGS 332 (339)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEecCCc
Confidence 999984 454
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-17 Score=188.26 Aligned_cols=151 Identities=10% Similarity=0.009 Sum_probs=97.9
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3467999999999999999999999999999999999854 222222 2356789999985 6678999
Q ss_pred HHHHHHHHHcCC---CchHHHHHHHHHcc-cccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH
Q 045902 981 YESLLYSAWLRL---PKDMFVEEVMELVE-MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~~---~~~~~~~~v~~~l~-l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~ 1056 (1472)
.|++.+...... +.....+.+.+.++ +.+..+.. ...||+||+||+.+ ++++.+|++++||||....|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 999876543221 11111233334433 33333332 24699999999988 5788899999999999888864
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecC
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQ 1081 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~ 1081 (1472)
++++ .+.+|++++|+
T Consensus 150 --------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 150 --------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp --------HHTT--CSEEEEEECCH
T ss_pred --------HHHh--cCeEEEEECCH
Confidence 2233 27899999996
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-17 Score=190.90 Aligned_cols=176 Identities=15% Similarity=0.191 Sum_probs=123.0
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----------hcccceeEEeccC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----------ETFARISGYCEQN 971 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----------~~~~~~~gyv~Q~ 971 (1472)
+.++|+++ +.|.+||+++|+||||||||||+++|+|...+ ..|.|.+.|.+... ..+.+.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 45799999 99999999999999999999999999998764 47999998864211 1234557778775
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 972 DIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 972 ~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
+. ...+.+.-... .....+.....+ .+...-...+..||+|| ||+++| +.+|++ |+
T Consensus 135 ~~-----~~~~r~~~~~~-----~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~ 190 (347)
T 2obl_A 135 DR-----PALERMKAAFT-----ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RG 190 (347)
T ss_dssp TS-----CHHHHHHHHHH-----HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BT
T ss_pred CC-----CHHHHHHHHHH-----HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------cc
Confidence 42 22222211000 000011110000 00000001134699999 899999 688887 99
Q ss_pred CCCHHHHHHHHHHHHHHhh--CCC-----EEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1052 GLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1052 gLD~~~~~~i~~~l~~l~~--~g~-----tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+.....+.++++++.+ .|. ||++++||.+ ...+|+++++.+ |+++..+++
T Consensus 191 Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 191 GFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp TBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 9999999999999999874 477 9999999987 357899999985 899988764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-18 Score=200.17 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=93.5
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL 992 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~ 992 (1472)
+++|+++||+||||||||||+++|+|...+. +|. +.++|++|++.+++. |++|++.+......
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhcCC
Confidence 8999999999999999999999999976531 121 357999999998888 99999864221112
Q ss_pred Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 993 PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 993 ~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
+.. +...+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+
T Consensus 150 ~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 150 PESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp GGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 221 34566777776 44433332 36999999999999999999999999999999986
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=158.22 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1020 VDGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA------~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999886 899999999999999999999999999999999977799999999997 356789999
Q ss_pred EEEe
Q 045902 1094 FLMK 1097 (1472)
Q Consensus 1094 ~~l~ 1097 (1472)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-16 Score=186.11 Aligned_cols=187 Identities=12% Similarity=0.074 Sum_probs=112.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-EEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG-RVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
..++|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|+. .++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRV----RLR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTC----CGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCC----Chh
Confidence 346899999999999999999999999999999999987654 46 5655432211000000111111110 001
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
+.+++... .+.. .+..+ ..+.+++..++. +. +...
T Consensus 94 ~~~~l~~~--------------~~~~----------~~~~~--------------~~~~~l~~~~l~------i~-~~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------IIEN----------GKFDQ--------------WFDELFGNDTFH------LY-DSFA 128 (296)
T ss_dssp GCHHHHHH--------------HHHH----------THHHH--------------HHHHHHSSSCEE------EE-CCCC
T ss_pred hccccccC--------------CCCH----------HHHHH--------------HHHHHhccCCEE------EE-CCCC
Confidence 11111100 0000 00000 112222211221 10 1123
Q ss_pred CCChHH-HHHHHHHHHHhCCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcEEEEEEecC-cc-------
Q 045902 344 GISGGQ-KKRVTTGEMLVGPAKALFMDEIST---G---LDS-STTFQIVRFMRQMVHITDVTMIISLLQP-AP------- 407 (1472)
Q Consensus 344 gLSGGq-rkRvsia~aL~~~p~illLDEpts---g---LDs-~t~~~i~~~L~~l~~~~~~tvii~~~q~-~~------- 407 (1472)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.|+|++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 488998 66776 999999999999999999 5 555 6678899999999887789999888775 13
Q ss_pred -------------hHHhccCeEEEecCCeE
Q 045902 408 -------------ETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 408 -------------~~~~~fD~iilL~~G~i 424 (1472)
.+.+.+|+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=191.31 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=68.8
Q ss_pred CCCC-ChHHHHHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 342 RRGI-SGGQKKRVTTGEMLVGPA--KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 342 ~~gL-SGGqrkRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
...| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ +.|||++.|+| ++...+|++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEE
Confidence 4457 999999999999999999 99999999999999999999999999975 68899888875 45567999999
Q ss_pred ecCC
Q 045902 419 LSEG 422 (1472)
Q Consensus 419 L~~G 422 (1472)
|.+|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-16 Score=179.59 Aligned_cols=132 Identities=18% Similarity=0.265 Sum_probs=97.6
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCee-EEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~-~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
.+|+++| +++|++++|+||||||||||+++|+|..+ +. +|+|.++|.++. |++|+...+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 4899999 89999999999999999999999999765 33 799999987642 333321100
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
. +. ..+|.. ...+ |++||++|..+|++|++|||| |+.+...+
T Consensus 75 -------v--~q------------------~~~gl~-~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~- 116 (261)
T 2eyu_A 75 -------V--NQ------------------REVGED-TKSF------ADALRAALREDPDVIFVGEMR---DLETVETA- 116 (261)
T ss_dssp -------E--EE------------------EEBTTT-BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH-
T ss_pred -------e--eH------------------HHhCCC-HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH-
Confidence 0 00 011110 0123 899999999999999999999 98886544
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1098 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~ 1098 (1472)
++. ++.|.+|++++|+.+ ..+.+|+++.|..
T Consensus 117 --l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 --LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp --HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred --HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 333 356999999999976 5678899988753
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=199.76 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=106.6
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhc--------CCCCCCeeEEEEEEcCccCChhcccceeEEeccCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA--------GRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI 973 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~--------g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~ 973 (1472)
...+++|+++.+++|++++|+|||||||||||++++ |..-+ ..+. .++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~---------------~~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESA---------------EVSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEE---------------EEECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccc---------------cchHH---HH
Confidence 356899999999999999999999999999999994 32211 0110 01111 00
Q ss_pred CCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCCCccccCCCC
Q 045902 974 HSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVEL--VANPSIIFMDEPTS 1051 (1472)
Q Consensus 974 ~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL--~~~p~il~LDEPTs 1051 (1472)
++..+++ .|.+ ..++|++++++..+|++| +.+|++++|||||+
T Consensus 708 ---------------------------i~~~ig~---~d~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~ 752 (934)
T 3thx_A 708 ---------------------------ILARVGA---GDSQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGR 752 (934)
T ss_dssp ---------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSC
T ss_pred ---------------------------HHHhcCc---hhhH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCC
Confidence 0011111 1111 135888888888888888 89999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1052 GLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1052 gLD~~~~~~i-~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||+.....+ +.+++.+.+ .|+|||++||+. ++.+.+|++..+.+ |++...++.
T Consensus 753 GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 753 GTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 9999988777 677788876 499999999995 46688999998875 788876654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-16 Score=181.34 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=93.9
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
..+++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 4567999999999999999999999999999999999965 222232 1245689999985 677899
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
+.|++.+.......... + ..+.+.+ ...++. |.+..+..+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~----------~-------~~~~~~~---------------~~~L~~--l~~~~~~~~-----~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----------D-------AFDNDLM---------------HRTLKN--IVEGKTVEV-----P 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----------G-------GBCHHHH---------------HHHHHH--HHTTCCEEE-----C
T ss_pred HhHhhhhhccCCCCCCc----------c-------cccHHHH---------------HHHHHH--HHCCCCeec-----c
Confidence 99998764332111000 0 0000111 112222 233344444 3
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
.+|+||+||+.+ ++++.+|+++++|||...+|.. +.+ ..+.+++++.|.
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~---~~~~~i~v~th~ 164 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD---MFHLRLFVDTDS 164 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT---TCSEEEEEECCH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH---hcCeEEEEECCH
Confidence 599999999988 5888899999999988877753 222 236777777654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-16 Score=208.33 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=112.7
Q ss_pred ceeeccceeEEeC-------CeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeE-EeccCCCC
Q 045902 903 LQLLQDVSGAFRP-------GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISG-YCEQNDIH 974 (1472)
Q Consensus 903 ~~iL~~vs~~i~~-------Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~g-yv~Q~~~~ 974 (1472)
..+++|+++.+++ |++++|+|||||||||||++| |.... ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence 5699999999988 999999999999999999999 86531 12345 9999753
Q ss_pred CCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 975 SPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 975 ~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
.+||.|++.. + +|+. |... .+.+.+|+|+++ +++|++++.+|++++|||||+|+|
T Consensus 828 --~l~v~d~I~~----r-------------ig~~---d~~~--~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd 882 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R-------------LGAS---DRIM--SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTA 882 (1022)
T ss_dssp --EECCCSBEEE----E-------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSC
T ss_pred --CCCHHHHHHH----H-------------cCCH---HHHh--hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCC
Confidence 4555554410 1 1111 1111 112467777765 999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 045902 1055 ARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVI 1103 (1472)
Q Consensus 1055 ~~~-~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~ 1103 (1472)
+.. ...++.+|+.++++ |+++|++||+++. ....+|++.++. |++.
T Consensus 883 ~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 883 TFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 987 46678999999876 9999999999653 445678888874 6776
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-15 Score=194.29 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=74.3
Q ss_pred CCCChHHHHHHHHHHHH--hCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEe
Q 045902 343 RGISGGQKKRVTTGEML--VGPAKALFMDEISTGLDSSTTFQI-VRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL--~~~p~illLDEptsgLDs~t~~~i-~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL 419 (1472)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+ ...++.+.+..+.+++++.|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 45899999999999888 999999999999999999999888 566777766568899998886 4677899999999
Q ss_pred cCCeEEEecChhHH
Q 045902 420 SEGEIVYQGPREYV 433 (1472)
Q Consensus 420 ~~G~iv~~G~~~~~ 433 (1472)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-16 Score=174.81 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=98.8
Q ss_pred eeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCC--C---eeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 905 LLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G---YIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 905 iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~---~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.|+.+- +.+++|++++|+||||||||||+++|+|.... + ...|.+.+++..... .+.++++.|...+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-
Confidence 344333 58999999999999999999999999983221 1 124577777654210 1123344443322221
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH-HHHHHHHHHHHhh-------CCCCccccCCC
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1050 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG-qrqRl~iA~aL~~-------~p~il~LDEPT 1050 (1472)
|+ .+.+.+. ...+.+ +++.+..+.+++. +|+++++||||
T Consensus 89 ~~---------------------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 89 EV---------------------LKHIYVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp HH---------------------HHTEEEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred HH---------------------hhcEEEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 22 2222111 013333 4444666777766 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHhhC-CCEEEEEecCccH---HHHHhhCeEEEEecC
Q 045902 1051 SGLDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSI---DIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1051 sgLD~~-------~-----~~~i~~~l~~l~~~-g~tvi~t~H~~~~---~~~~~~D~v~~l~~g 1099 (1472)
+++|+. . ...+++.|++++++ |.|||+++|..+. .+...+|+++.|.++
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999983 2 23677788887654 9999999995431 255678999999864
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-15 Score=196.08 Aligned_cols=145 Identities=13% Similarity=0.120 Sum_probs=98.6
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+..+++|||+.+++|++++|+|||||||||||+++++..... .. |...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 457999999999999999999999999999999997631100 00 1000000 0011111 1111112211
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
+++ .. +.+.+|+||+|++.|+++ +.+|++++|||||+|||+.....+
T Consensus 727 d~l------------------------------~~--~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i 773 (918)
T 3thx_B 727 DNI------------------------------YK--GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAI 773 (918)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHH
T ss_pred HHH------------------------------HH--hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHH
Confidence 111 10 124689999999999999 899999999999999999998888
Q ss_pred H-HHHHHHhh-CCCEEEEEecCccHHHHHhhCeE
Q 045902 1062 M-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1062 ~-~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
. .+++.+++ .|+|||++||+++ +.+.+|+.
T Consensus 774 ~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 774 AYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 6 77777765 5999999999965 45566653
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-15 Score=195.98 Aligned_cols=129 Identities=21% Similarity=0.136 Sum_probs=96.9
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+..+++|+|++ |++++|+|||||||||||++|+|.... ...|.+ ... .+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~------vpa--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSF------VPA--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCC------BSS--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCce------eeh--hccceeeHHH---hhccCCHH
Confidence 35799999999 999999999999999999999995320 012322 111 1345677776 44556666
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHH--hhCCCCccccCC---CCCCCHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVEL--VANPSIIFMDEP---TSGLDAR 1056 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL--~~~p~il~LDEP---TsgLD~~ 1056 (1472)
|++. .++|+|+++++.+|++| +.+|++++|||| |++||..
T Consensus 630 d~l~-----------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~ 674 (765)
T 1ewq_A 630 DDLA-----------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV 674 (765)
T ss_dssp ----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH
T ss_pred HHHH-----------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH
Confidence 5542 14799999999999999 999999999999 9999998
Q ss_pred HH-HHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1057 AA-AIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1057 ~~-~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
+. ..+++.|++ .|+|||++||+.+
T Consensus 675 ~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 675 AIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp HHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred HHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 75 567777776 4899999999853
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-16 Score=185.45 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=85.1
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC-CCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~-~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
+++.+++|++++| +|+||||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4567999999998 99999999999999999996 43 3467 8888876533222345789999888878889
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC-CCCHHHH
Q 045902 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAA 1058 (1472)
Q Consensus 980 v~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs-gLD~~~~ 1058 (1472)
+.|+.-+...... .+....+.+.+ .+..+... +++|||||||+.+||+++ +|++||||+ |||+...
T Consensus 80 v~Dt~g~~~~~~~--~e~~~~l~~~l--~~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~ 146 (301)
T 2qnr_A 80 VVDTPGYGDAINC--RDCFKTIISYI--DEQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV 146 (301)
T ss_dssp EEEEC-------------CTTHHHHH--HHHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH
T ss_pred hhhhhhhhhhcCc--HHHHHHHHHHH--HHHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH
Confidence 8888766433210 00111111111 11122222 369999999999988875 999999998 5999873
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCcc
Q 045902 1059 AIVMRTVRNTVDT-GRTVVCTIHQPS 1083 (1472)
Q Consensus 1059 ~~i~~~l~~l~~~-g~tvi~t~H~~~ 1083 (1472)
+.++++.+. +.++|++.||..
T Consensus 147 ----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 147 ----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ----HHHHHHHhcCCEEEEEEeCCCC
Confidence 556666543 789999999863
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-16 Score=182.74 Aligned_cols=180 Identities=12% Similarity=0.145 Sum_probs=123.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC----------CCCceEEEEcC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF----------VPQRTCAYISQ 254 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yv~Q 254 (1472)
...+|+++ +.+.+|++++|+||||||||||+++|+|..+++ .|.|.++|++..+. ..++.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 35689999 999999999999999999999999999999887 79999998652111 01346777777
Q ss_pred CCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc
Q 045902 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD 334 (1472)
Q Consensus 255 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 334 (1472)
.+. ...+.+.-... ...+. ++ ....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~----------~~~~a--------------------------------e~-~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFT----------ATTIA--------------------------------EY-FRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHH----------HHHHH--------------------------------HH-HHTTT----CE
T ss_pred CCC-----CHHHHHHHHHH----------HHHHH--------------------------------HH-HHhcc----cc
Confidence 532 22222211000 00000 00 00000 00
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEEecCcch
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH-ITDV-----TMIISLLQPAPE 408 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~-~~~~-----tvii~~~q~~~~ 408 (1472)
..+--+....+|+|| |||++| +++|++ |+|||+....++.+.++++.+ ..|. |+++..|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 000001233499999 899999 578876 999999999999999998864 3465 6666655544
Q ss_pred HHhccCeEEEecCCeEEEecChhHH
Q 045902 409 TYDLFDDIILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 409 ~~~~fD~iilL~~G~iv~~G~~~~~ 433 (1472)
..++|++++|.+|+++..|+.++.
T Consensus 230 -~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 -DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ChhhhheEEeeCcEEEEeCCHHHc
Confidence 457899999999999999987665
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-16 Score=175.88 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=110.2
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC--CCCCHHHHHHHHHHc
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS--PNVTIYESLLYSAWL 990 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~~~~~l 990 (1472)
.++|+++||+||||||||||+++|+|...+ .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999996531 368999998776 5689988865421
Q ss_pred CCCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHH----HHHHHHHHHHhhCCCCccccCCCCC-------CCHH
Q 045902 991 RLPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG-------LDAR 1056 (1472)
Q Consensus 991 ~~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq----rqRl~iA~aL~~~p~il~LDEPTsg-------LD~~ 1056 (1472)
..+. ...+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++ ||+.
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~ 134 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDAD 134 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECC
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCC
Confidence 1111 24456677777766544432 24689996 4788999999999999999999999 9999
Q ss_pred HHHHHHHHHHHH-hhCCCEEEEEecCc
Q 045902 1057 AAAIVMRTVRNT-VDTGRTVVCTIHQP 1082 (1472)
Q Consensus 1057 ~~~~i~~~l~~l-~~~g~tvi~t~H~~ 1082 (1472)
....+.+.+++. .+.|+|++.++|+.
T Consensus 135 ~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 135 ADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999998876 45699999999974
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-15 Score=167.06 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=46.3
Q ss_pred CCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEEecCc---chHHhccCeEEEecCCe
Q 045902 361 GPAKALFMDEISTGLDSST------------TFQIVRFMRQMVHITDVTMIISLLQPA---PETYDLFDDIILLSEGE 423 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t------------~~~i~~~L~~l~~~~~~tvii~~~q~~---~~~~~~fD~iilL~~G~ 423 (1472)
.+|+++++||||++||+.. ..++++.|+++++..+.|+|++.|... ..+...+|+++.|++|+
T Consensus 124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3899999999999999842 237888888888777899988877432 13667899999998753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-15 Score=175.86 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeEEeccCCCCCCCCCHHHHHH
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TF--ARISGYCEQNDIHSPNVTIYESLL 985 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~--~~~~gyv~Q~~~~~~~lTv~e~l~ 985 (1472)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999999997664 379999999875321 11 245899999998888899999987
Q ss_pred HHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHH
Q 045902 986 YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065 (1472)
Q Consensus 986 ~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l 1065 (1472)
+....... ..+++..|+.+..+. -++..++||++|||+|+.+|+.++| .||+.+...+++.+
T Consensus 179 ~~~~~~~d-----~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~ 240 (304)
T 1rj9_A 179 AMKARGYD-----LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQA 240 (304)
T ss_dssp HHHHHTCS-----EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHH
T ss_pred HHHhCCCC-----EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHH
Confidence 64321100 001122222221111 2455669999999999999994333 44444445566666
Q ss_pred HHHhhC-CCEEEEEecCc
Q 045902 1066 RNTVDT-GRTVVCTIHQP 1082 (1472)
Q Consensus 1066 ~~l~~~-g~tvi~t~H~~ 1082 (1472)
+++.+. |.|+|++||+.
T Consensus 241 ~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 241 KKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHCCSEEEEECTT
T ss_pred HHHHHHcCCcEEEEECCc
Confidence 776544 89999999973
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=161.24 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=108.2
Q ss_pred ceeecccee-EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccc---eeEEeccCCCCCCCC
Q 045902 903 LQLLQDVSG-AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR---ISGYCEQNDIHSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~-~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~---~~gyv~Q~~~~~~~l 978 (1472)
...|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+.......+ ..++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 457888885 899999999999999999999999997543 12345555443322111111 112222110000 00
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC--CccccCCCCCC--C
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGL--D 1054 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~--il~LDEPTsgL--D 1054 (1472)
.+ ++...+.++ .... ....|.++.++...+.....+|+ ++++||||+++ |
T Consensus 86 ~~-----------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d 139 (235)
T 2w0m_A 86 II-----------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK 139 (235)
T ss_dssp EE-----------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC
T ss_pred EE-----------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC
Confidence 00 000000000 0000 12359999999888888888999 99999999888 9
Q ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEecCcc-------HHHHHhhCeEEEEec
Q 045902 1055 ARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKR 1098 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~-------~~~~~~~D~v~~l~~ 1098 (1472)
+.....+++.|+++++ .|.|||+++|+.. ..+.+.+|++++|.+
T Consensus 140 ~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 140 PAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 9989999999999864 4899999999972 236678999999975
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-14 Score=144.51 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=71.0
Q ss_pred ccCCCCChHHHHHHHHH------HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhcc
Q 045902 340 EMRRGISGGQKKRVTTG------EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413 (1472)
Q Consensus 340 ~~~~gLSGGqrkRvsia------~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~f 413 (1472)
..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ +..+.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhC
Confidence 34456999999999876 899999999999999999999999999999999865 378899888875 567899
Q ss_pred CeEEEe--cCCeE
Q 045902 414 DDIILL--SEGEI 424 (1472)
Q Consensus 414 D~iilL--~~G~i 424 (1472)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 56644
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.7e-15 Score=190.22 Aligned_cols=156 Identities=12% Similarity=0.030 Sum_probs=105.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
+..+++|+++. ++|++++|+|||||||||||++|+|....+ . .|...... ...++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q---~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----Y---IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----T---TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----h---cCcccchh--cccceeHHH---HHhhCCHH
Confidence 35699999999 999999999999999999999999852110 0 12111111 134566655 44555665
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
|++... .+.+|+|+++ +..+..++.+|++++|||||+|+|+.....+
T Consensus 661 d~l~~~--------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 661 DDLASG--------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp -----------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred HHHHhh--------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence 554211 1246777664 4455557899999999999999999776664
Q ss_pred -HHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1062 -MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1062 -~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
+.+++.+.+ .|.|+|++||+++ +.+.+|++..+.+ +++.+..
T Consensus 708 ~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~ 751 (800)
T 1wb9_A 708 AWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALE 751 (800)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEE
Confidence 788888887 4999999999975 4567887766654 5665543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-15 Score=180.31 Aligned_cols=163 Identities=19% Similarity=0.147 Sum_probs=101.6
Q ss_pred eeccc-eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCee----EEE-EEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 905 LLQDV-SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI----EGS-ISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 905 iL~~v-s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~----~G~-i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.|+++ .+.+++|++++|+||||||||||++.|++.....+. .|. |++++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 46665 689999999999999999999999999996421111 366 888886531 12345666665433221
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh-------hCCCCccccCCCC
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV-------ANPSIIFMDEPTS 1051 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~-------~~p~il~LDEPTs 1051 (1472)
++.||+. +. +. .-|.+|+|++.++++++ .+|++|++||||+
T Consensus 195 ~v~~ni~---------------------~~---~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 195 EVLKHIY---------------------VA---RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHGGGEE---------------------EE---EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHhhCEE---------------------EE---ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 2222211 11 00 02567888898888888 6899999999999
Q ss_pred CCCHHH------------HHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1052 GLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1052 gLD~~~------------~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
++|+.. ...+++.|+++++ .|+|||+|+|... +.-..++...... +|+++.+
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~ 307 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAH 307 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCT
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEee
Confidence 999852 3566677777765 4899999999854 2322334444443 4554433
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-15 Score=176.18 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=80.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC-CCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK-SDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~-~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 263 (1472)
++.+++|+++.| +|+||||||||||++.|.|. ..+. +| |.++|.++..-...+.++|++|++.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6655 78 8888876643222345789999988888899
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|.||..++.... ..+.. ..+ .+++.+. .+ .+.+
T Consensus 80 v~Dt~g~~~~~~-------------~~e~~------~~l-----------------~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAIN-------------CRDCF------KTI-----------------ISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC------------------------C------TTH-----------------HHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcC-------------cHHHH------HHH-----------------HHHHHHH------HH-----HHHH
Confidence 999987643210 00000 000 1111111 12 2234
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTG-LDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsg-LDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
++|||||||+.+||+++ ++++||||++ ||+... +.++++....+.++|++-|+
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCC
Confidence 59999999999988885 9999999985 999873 55666554345566655443
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-15 Score=197.99 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=109.6
Q ss_pred ceeeeceeeEEeC-------CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEE-EEcCCCC
Q 045902 186 LEILHDVSGIVKP-------SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCA-YISQHDL 257 (1472)
Q Consensus 186 ~~iL~~vs~~i~~-------Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~ 257 (1472)
..+++|+++.+++ |++++|+|||||||||||++| |.+.. ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 87642 01233 8888652
Q ss_pred CCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccc
Q 045902 258 HHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMV 337 (1472)
Q Consensus 258 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 337 (1472)
.+||.|++.. +. |+.+..+.
T Consensus 828 ---~l~v~d~I~~--ri-----------------------------------------------------g~~d~~~~-- 847 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--RL-----------------------------------------------------GASDRIMS-- 847 (1022)
T ss_dssp ---EECCCSBEEE--EC-----------------------------------------------------C---------
T ss_pred ---CCCHHHHHHH--Hc-----------------------------------------------------CCHHHHhh--
Confidence 4566555410 00 00000000
Q ss_pred cCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 338 GNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT-FQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 338 g~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~-~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
....+|++++ ++++|++++.+|++++||||++|+|+... ..++..|+.+++..+.+++++.|.+ ..+...+|++
T Consensus 848 ---~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~ 922 (1022)
T 2o8b_B 848 ---GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCS
T ss_pred ---chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcc
Confidence 0123566655 59999999999999999999999999985 4467888888765578888887654 4566678998
Q ss_pred EEecCCeEE--EecChh
Q 045902 417 ILLSEGEIV--YQGPRE 431 (1472)
Q Consensus 417 ilL~~G~iv--~~G~~~ 431 (1472)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 556543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-16 Score=170.79 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=105.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCC--CCCCHHHHHHHhhh
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHH--GEMTVRETLDFSGR 273 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 273 (1472)
.++|++++|+||||||||||+++|+|.+.+ .++|++|++.++ ..+|++|++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999997642 378999998776 56899998765321
Q ss_pred ccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH----
Q 045902 274 CLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ---- 349 (1472)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq---- 349 (1472)
.. + .. +.+ ....+++.+++.+..+..+ ..+|+||
T Consensus 61 ~~--~-------~~-------------~~~---------------~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-------AF-------------DLA---------------LYLEHAQALLRGLPVEMPV-----YDFRAYTRSPR 98 (211)
T ss_dssp SG--G-------GB-------------CHH---------------HHHHHHHHHHTTCCEEECC-----EETTTTEECSS
T ss_pred Ch--h-------hh-------------hHH---------------HHHHHHHHHHcCCCcCCCc-----ccCcccCCCCC
Confidence 00 0 00 000 1123455666655444433 3488886
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTG-------LDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsg-------LDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
+||+++|++++.+|.++++||||++ ||+.+..++.+.+++..+..|.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999999987655567777665554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-14 Score=162.18 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=102.4
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR 991 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~ 991 (1472)
.+++|++++|+||||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+.- ....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~~-~g~~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLHA-LGAH 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHHH-HHTT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHHH-HHhh
Confidence 589999999999999999999999998433 2444 23443211 2346677655421 011112111 0111
Q ss_pred CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC--CCCHHH---HHHHHHHHH
Q 045902 992 LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AAIVMRTVR 1066 (1472)
Q Consensus 992 ~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs--gLD~~~---~~~i~~~l~ 1066 (1472)
......+++++.+.+.+..+.. +..||+||+|++ ++++.+|+++++||||+ ++|... ...+++.|+
T Consensus 94 -~~~~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~ 164 (279)
T 1nlf_A 94 -LSAEERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRME 164 (279)
T ss_dssp -SCHHHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHH
T ss_pred -cChhhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHH
Confidence 1223456677888777665433 346999998865 68889999999999999 999744 478888999
Q ss_pred HHh-hCCCEEEEEecCcc
Q 045902 1067 NTV-DTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1067 ~l~-~~g~tvi~t~H~~~ 1083 (1472)
+++ +.|+|||+++|+..
T Consensus 165 ~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 165 AIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHCCEEEEEEEC--
T ss_pred HHHHHcCCEEEEEecCCC
Confidence 986 45999999999854
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-14 Score=183.02 Aligned_cols=71 Identities=8% Similarity=0.107 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIV-RFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~-~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
..+|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+++..|.|++++.|.+ +..+++|+.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 3489999999999998 8999999999999999999999997 677777665688999988764 455666653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-15 Score=174.70 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=101.5
Q ss_pred eeeece-eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCC-CCceeE-EEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 187 EILHDV-SGIVKPSRMTLLLGPPGSGKTTLLQALSGKS--DKS-LRVSGR-VTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 187 ~iL~~v-s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
.-|+++ +|.+++|++++|+||||||||||++.|+|.. +++ ....|+ |.+++.+. + ..+.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 346665 6899999999999999999999999999986 433 011367 77777542 1 12234555554433322
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
++.||+.+...
T Consensus 195 -~v~~ni~~~~~-------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 -EVLKHIYVARA-------------------------------------------------------------------- 205 (349)
T ss_dssp -HHGGGEEEEEC--------------------------------------------------------------------
T ss_pred -HHhhCEEEEec--------------------------------------------------------------------
Confidence 44444322110
Q ss_pred CCCCChHHHHHHHHHHHHh-------CCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEE
Q 045902 342 RRGISGGQKKRVTTGEMLV-------GPAKALFMDEISTGLDSST------------TFQIVRFMRQMVHITDVTMIISL 402 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~-------~~p~illLDEptsgLDs~t------------~~~i~~~L~~l~~~~~~tvii~~ 402 (1472)
--|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+.|+|++.
T Consensus 206 --~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 206 --FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283 (349)
T ss_dssp --CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred --CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 01344555555555555 7899999999999999852 35677778888877788888877
Q ss_pred ecCcchHHhccCeEEEecCCeEEEecCh
Q 045902 403 LQPAPETYDLFDDIILLSEGEIVYQGPR 430 (1472)
Q Consensus 403 ~q~~~~~~~~fD~iilL~~G~iv~~G~~ 430 (1472)
|... ..-..|++......|+++.++..
T Consensus 284 h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 284 QVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp ECC----------------CCCCCTTCS
T ss_pred cccc-ccccccCCccccCCcceEeecCc
Confidence 6543 33334556667777877766553
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-14 Score=164.91 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=95.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
++|+|+| +++|++++|+|||||||||||++|+|.++++ .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 8999999999999999999999999988652 169999998764321 11111111110
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011110 012
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|++||++|..+|+++++|||| |..+...++ +. +. .|.++++++|.+. ..+.+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 988866544 33 23 5788888888754 6678899888854
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=165.16 Aligned_cols=75 Identities=20% Similarity=0.398 Sum_probs=65.9
Q ss_pred CCCChHHHHHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 343 RGISGGQKKRVTTGEMLV----GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
..||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .+.++|++.|+ .+..+.+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEE
Confidence 349999999999999999 78999999999999999999999999998754 36788887776 467789999999
Q ss_pred ec
Q 045902 419 LS 420 (1472)
Q Consensus 419 L~ 420 (1472)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-15 Score=170.34 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---------CceEEEEcCCCCCCCCCCHHHHH
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---------QRTCAYISQHDLHHGEMTVRETL 268 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 268 (1472)
+|++++|+||||||||||++.|+|.+.++ +|+|.++|.++..... ++.++|++|++...|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999887 8999999998754321 23589999999888989999999
Q ss_pred HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChH
Q 045902 269 DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGG 348 (1472)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGG 348 (1472)
.++.. .+. +. .+++..|+.+..+. -++..
T Consensus 178 ~~~~~-~~~---------------d~---------------------------~llDt~G~~~~~~~--------~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------DL---------------------------LFVDTAGRLHTKHN--------LMEEL 206 (304)
T ss_dssp HHHHH-HTC---------------SE---------------------------EEECCCCCCTTCHH--------HHHHH
T ss_pred HHHHh-CCC---------------CE---------------------------EEecCCCCCCchHH--------HHHHH
Confidence 76421 000 00 01112233222111 14555
Q ss_pred HHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 045902 349 QKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQP 405 (1472)
Q Consensus 349 qrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~ 405 (1472)
+|||++|||+++.+|+.++| .||+.+..++++.++++.+..+.|+|+..|.+
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 68999999999999995555 56666666777778777665678888877753
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-14 Score=169.83 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=89.5
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
+|+++ ...+|++++|+|||||||||||++|+|...+. ..|.|...+.+... ......+++.|.......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~------- 182 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDT------- 182 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTB-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeecccc-------
Confidence 44444 67899999999999999999999999975421 13555444333211 111222344443222111
Q ss_pred HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 985 LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 985 ~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
++..+ +||++|..+|++|++|||| |..+.. .
T Consensus 183 --------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 183 --------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp --------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred --------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 22222 8999999999999999999 666544 4
Q ss_pred HHHHhhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 045902 1065 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1098 (1472)
Q Consensus 1065 l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~ 1098 (1472)
+.+++++|.||++|+|+.+. .+.+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 44456779999999999874 388999998854
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-15 Score=162.83 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK 994 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~ 994 (1472)
|++++|+||||||||||+++|+|... . +| |.++|.+..+ ...++.+||++|+.. ... +++ +.+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hcccccC
Confidence 78999999999999999999999764 2 57 8888876533 235677899999751 111 111 0110000
Q ss_pred hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH-HHHH---HHhhCCCCccccC--CCCCCCHHHHHHHHHHHHHH
Q 045902 995 DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIVMRTVRNT 1068 (1472)
Q Consensus 995 ~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl-~iA~---aL~~~p~il~LDE--PTsgLD~~~~~~i~~~l~~l 1068 (1472)
+ ..-.+..++.. ...+|+|||+++ ++++ |++.+|++|+||| ||..+|......+.+++
T Consensus 69 ~------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l--- 132 (189)
T 2i3b_A 69 P------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL--- 132 (189)
T ss_dssp C------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH---
T ss_pred C------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH---
Confidence 0 00011133332 235999999988 4454 5789999999999 89999987655554444
Q ss_pred hhCCCEEEE----EecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1069 VDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1069 ~~~g~tvi~----t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
+...++|+ ++|+.+. ...|++..+. +|+++...+.
T Consensus 133 -~~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 133 -STPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp -HCSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSS
T ss_pred -hCCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChH
Confidence 44445553 2388642 3456666665 4777776653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-15 Score=165.70 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-CCceEEEEcCCCCCCCCCCHHHHHHHhhhccCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 277 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 277 (1472)
|++++|+||||||||||+++|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999987 5 78 888888775432 246789999964 111 1111 00000
Q ss_pred CchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHH-HH
Q 045902 278 GTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT-TG 356 (1472)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvs-ia 356 (1472)
.+. +...+..+| ++...+|||||+++. ++
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~-~~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVG-QYVVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESS-SSEECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccc-eEEEcchHHHHHHHHHHh
Confidence 000 000111333 234459999999984 44
Q ss_pred H---HHhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---EEecCcchHHhccCeEEEecCCeEEEec
Q 045902 357 E---MLVGPAKALFMDE--ISTGLDSSTTFQIVRFMRQMVHITDVTMII---SLLQPAPETYDLFDDIILLSEGEIVYQG 428 (1472)
Q Consensus 357 ~---aL~~~p~illLDE--ptsgLDs~t~~~i~~~L~~l~~~~~~tvii---~~~q~~~~~~~~fD~iilL~~G~iv~~G 428 (1472)
+ |+..+|++++||| |+..+|......+.+.++ . ..++|+ ++.|..+ ..+.|+|..+.+|+++.-.
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5789999999999 898899876555555554 2 334443 2213322 3467888888899988643
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-14 Score=181.95 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=96.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-CCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD-KSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. + ..+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999753 22 34421 0 01234666655 4444555
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55441 24
Q ss_pred CChHHHHHHHHHHHH--hCCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEecCcchHHhcc
Q 045902 345 ISGGQKKRVTTGEML--VGPAKALFMDEI---STGLDSSTT-FQIVRFMRQMVHITDVTMIISLLQPAPETYDLF 413 (1472)
Q Consensus 345 LSGGqrkRvsia~aL--~~~p~illLDEp---tsgLDs~t~-~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~f 413 (1472)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+++.|++ .+.+++++.|.+ +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 899999999999999 999999999999 999998875 568888765 367888888764 344443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-15 Score=185.82 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=106.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCC-CCCceeEEEEcCeeCCC------CCCCceEEEEcCCCCCCCCCCHHHHHHHhhhc
Q 045902 202 TLLLGPPGSGKTTLLQALSGKSDK-SLRVSGRVTYCGHELTE------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 274 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~~~-~~~~~G~I~~~G~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 274 (1472)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999866 5 8999999988521 12346799999999999999999999775321
Q ss_pred cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHH
Q 045902 275 LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354 (1472)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvs 354 (1472)
.+.. . .++| ++++.
T Consensus 125 ~~~~--------------~-------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGE--------------G-------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCS--------------S-------------------------------------------------SCCC---SCCEE
T ss_pred hcCC--------------c-------------------------------------------------cccc---hHHHH
Confidence 1000 0 0011 11112
Q ss_pred HHHHHhCCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCcc---h---HHhc-----cCeE
Q 045902 355 TGEMLVGPAKALFMDEI------STGLDSSTTFQIVRFMRQMVHIT-DVTMIISLLQPAP---E---TYDL-----FDDI 416 (1472)
Q Consensus 355 ia~aL~~~p~illLDEp------tsgLDs~t~~~i~~~L~~l~~~~-~~tvii~~~q~~~---~---~~~~-----fD~i 416 (1472)
++.+....|+++++||| |+|||+....++.+.++++.... +.+++++.|.... + +.+. ...|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 99999999999999999975443 3444444433221 1 1122 2458
Q ss_pred EEecCCeEEEecChhHHHHH
Q 045902 417 ILLSEGEIVYQGPREYVLDF 436 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~~~ 436 (1472)
+|+.++..+..|+.+++.+.
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp EEEECGGGSSSSSTTCCCCC
T ss_pred EEecchhhcCcccHHHHHHH
Confidence 88999988888876655443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-13 Score=148.59 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=65.2
Q ss_pred CChHHHHHHHHHHHHhCCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCc-------chHHhcc
Q 045902 345 ISGGQKKRVTTGEMLVGPAK--ALFMDEISTGL--DSSTTFQIVRFMRQMVHITDVTMIISLLQPA-------PETYDLF 413 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~--illLDEptsgL--Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~-------~~~~~~f 413 (1472)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|++++.|... +.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 59999988888777778999 99999999888 9999999999999998777889888877662 4577899
Q ss_pred CeEEEecCC
Q 045902 414 DDIILLSEG 422 (1472)
Q Consensus 414 D~iilL~~G 422 (1472)
|+|++|+..
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-14 Score=157.45 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=88.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC---CCeeEEEEEEcCccC--ChhcccceeEEeccCCCCCCCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGYIEGSISISGYPK--KQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~G~~~--~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
.+|++ +.+++|+.++|+|+||||||||++.|+|... ..+..|.+.+.+.-. ....+....|+..+. .+.-
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~ 90 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEE 90 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------C
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHH
Confidence 46777 8899999999999999999999999999751 012345443321100 000000011111100 0000
Q ss_pred C---HHHHHHHHHH-cC------------CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHH-HHHHHHHhhCC
Q 045902 979 T---IYESLLYSAW-LR------------LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR-LTIAVELVANP 1041 (1472)
Q Consensus 979 T---v~e~l~~~~~-l~------------~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqR-l~iA~aL~~~p 1041 (1472)
. .+..+..... .+ .+.....+++.+.+...++....+++. ...+|+||||| +.++++++.+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK-~D~~s~~~~~~~~~~~~~~~~~~ 169 (210)
T 1pui_A 91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK-ADKLASGARKAQLNMVREAVLAF 169 (210)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC-GGGSCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec-ccCCCchhHHHHHHHHHHHHHhc
Confidence 0 0111111100 00 001111122333322222221112211 34699999999 89999999999
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhhCCCE
Q 045902 1042 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1074 (1472)
Q Consensus 1042 ~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~t 1074 (1472)
+++++|||||++|......+++.|.++..+|.|
T Consensus 170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp CSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred CCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998766644
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-14 Score=180.93 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=93.8
Q ss_pred EEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC------hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK------QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL 992 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~ 992 (1472)
+||+|||||||||||++|+|...+ ..+|.|+++|.++. ...+++.+||++|+..+++.+||+|++.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~- 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI- 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH-
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh-
Confidence 999999999999999999998653 14899999998731 2346678999999999999999999997643210
Q ss_pred CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC------CCCCCHHHHHHHHHHHH
Q 045902 993 PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAAIVMRTVR 1066 (1472)
Q Consensus 993 ~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP------TsgLD~~~~~~i~~~l~ 1066 (1472)
+... .++| ++++.++.+...+|+++++||| |+|||+.....+.++++
T Consensus 126 -------------~~~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~ 178 (608)
T 3szr_A 126 -------------AGEG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 178 (608)
T ss_dssp -------------HCSS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred -------------cCCc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence 0000 0111 1112222233458999999999 99999999999999999
Q ss_pred HHhhC--CCEEEEEecCcc
Q 045902 1067 NTVDT--GRTVVCTIHQPS 1083 (1472)
Q Consensus 1067 ~l~~~--g~tvi~t~H~~~ 1083 (1472)
++..+ +.++++++|+.+
T Consensus 179 ~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 179 KYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHTTSSSCCEEEEEESSSC
T ss_pred HHHhcCCCCceEEEeccch
Confidence 97543 678899999876
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=150.08 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=100.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhc
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 274 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 274 (1472)
-+++|++++|+||||||||||++.|++... .|.+ +.|.+.. ....+.|+..++. .. .+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~~-~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------PT-AIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------HH-HHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------HH-HHH--HHH
Confidence 489999999999999999999999998543 3444 2343321 1346788876542 21 110 000
Q ss_pred cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHH
Q 045902 275 LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVT 354 (1472)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvs 354 (1472)
. .+ +...+ ....+.+++.+++.+..+..+ ..+|+||++++
T Consensus 88 ~----------~~-------g~~~~-----------------~~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 H----------AL-------GAHLS-----------------AEERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL- 127 (279)
T ss_dssp H----------HH-------HTTSC-----------------HHHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH-
T ss_pred H----------HH-------HhhcC-----------------hhhhhhccCceEEeecCCCCc-----ccCCHHHHHHH-
Confidence 0 00 00000 001233566777766555433 45999998876
Q ss_pred HHHHHhCCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHHHhCCcEEEEEEecC
Q 045902 355 TGEMLVGPAKALFMDEIST--GLDSSTT---FQIVRFMRQMVHITDVTMIISLLQP 405 (1472)
Q Consensus 355 ia~aL~~~p~illLDEpts--gLDs~t~---~~i~~~L~~l~~~~~~tvii~~~q~ 405 (1472)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.|+|++.|..
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 57888999999999999 9998554 7888999999876788988877654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-14 Score=171.55 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=91.5
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++.+++|+||+| +|+|+||||||||+++|+|...+....|.+.+++.+ ....+.++|++|++...+.+|+
T Consensus 22 ~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 22 YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 3467999999998 999999999999999999975421112222222211 1123567999999888888999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC---CccccCCC-CCCCHH
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPS---IIFMDEPT-SGLDAR 1056 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~---il~LDEPT-sgLD~~ 1056 (1472)
.|++.+..... .......+.+.++ ..++.+++||++||++++.+|+ +|++|||| .|||+.
T Consensus 93 ~Dt~g~~~~~~--~~~~~~~i~~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~ 156 (418)
T 2qag_C 93 VDTPGFGDAVD--NSNCWQPVIDYID--------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPL 156 (418)
T ss_dssp EECC-------------CHHHHHHHH--------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHH
T ss_pred eechhhhhhcc--chhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHH
Confidence 99987754321 1111112222211 1366778889999999999999 89999999 699988
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1057 AAAIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1057 ~~~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
.. +.++++.. +.+||+++|..+
T Consensus 157 d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 157 DI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp HH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HH----HHHHHHhc-cCcEEEEEEccc
Confidence 74 34455543 788888888643
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-13 Score=177.42 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=103.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC--ceEEEEcCCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ--RTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~--~~~~yv~Q~d~~~~~lT 263 (1472)
..+++|+++. ++|++++|+||||||||||||+|+|..... ..| . +.+. ..++++.| +++.++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~----~vpa~~~~i~~~~~---i~~~~~ 658 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------S----YVPAQKVEIGPIDR---IFTRVG 658 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------C----CBSSSEEEECCCCE---EEEEEC
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------c----ccchhcccceeHHH---HHhhCC
Confidence 4689999999 999999999999999999999999963211 012 1 1111 23444443 444455
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
+.|++... ..
T Consensus 659 ~~d~l~~~----------------------------------------------------------------------~s 668 (800)
T 1wb9_A 659 AADDLASG----------------------------------------------------------------------RS 668 (800)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhh----------------------------------------------------------------------hh
Confidence 55554211 01
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQI-VRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i-~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
.+|+|+++ ++.+...+.+|++++||||++|+|+.....+ ...++.+.+..+.+++++.|.+ +..+++|++..+.+|
T Consensus 669 tf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEE
T ss_pred hhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEE
Confidence 25666654 4444456899999999999999999888776 6778887764578999988875 455688887777777
Q ss_pred eEEEec
Q 045902 423 EIVYQG 428 (1472)
Q Consensus 423 ~iv~~G 428 (1472)
++.+..
T Consensus 746 ~~~~~~ 751 (800)
T 1wb9_A 746 HLDALE 751 (800)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776553
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-14 Score=158.19 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHc
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWL 990 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l 990 (1472)
-..++|++++|+||||||||||+++|+|..++....|.|.+.+.+.... .++.++|++|++..++.+|+...
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~------- 82 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDA------- 82 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTC-------
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCH-------
Confidence 3578999999999999999999999999765323689999998765432 23457899987544333222000
Q ss_pred CCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh
Q 045902 991 RLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070 (1472)
Q Consensus 991 ~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~ 1070 (1472)
.++.+. +..... +.| +++ ..+++.++++++|| ||+.++..+.+.+.
T Consensus 83 ----------f~E~~~---~~~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~---- 128 (219)
T 1s96_A 83 ----------FLEHAE---VFGNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP---- 128 (219)
T ss_dssp ----------EEEEEE---ETTEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----
T ss_pred ----------HHHHHH---HHhccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----
Confidence 000000 000000 122 222 45566778999999 99999999988776
Q ss_pred CCCEEEEEecCcc
Q 045902 1071 TGRTVVCTIHQPS 1083 (1472)
Q Consensus 1071 ~g~tvi~t~H~~~ 1083 (1472)
++.||++++|+++
T Consensus 129 ~~~tI~i~th~~~ 141 (219)
T 1s96_A 129 HARSIFILPPSKI 141 (219)
T ss_dssp TCEEEEEECSSHH
T ss_pred CCEEEEEECCCHH
Confidence 5899999999865
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-12 Score=137.02 Aligned_cols=75 Identities=11% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE
Q 045902 1020 VDGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1095 (1472)
Q Consensus 1020 ~~~LSgGqrqRl~iA~aL~~----~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~ 1095 (1472)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999974 4699999999999999999999999999865 47899999984 46788999986
Q ss_pred Ee
Q 045902 1096 MK 1097 (1472)
Q Consensus 1096 l~ 1097 (1472)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.9e-12 Score=137.19 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=100.0
Q ss_pred eeeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
+.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.+.++..+ . .+..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~~~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSPER 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCHHH
Confidence 4677776 4899999999999999999999999998 221 2334443321 1 11111
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH--HHHHHHHHHHHhhC-CCCccccCCCCCCCHHH--
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGLDARA-- 1057 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG--qrqRl~iA~aL~~~-p~il~LDEPTsgLD~~~-- 1057 (1472)
-.......... .+++++.+.. . ..|++ +++++..+++++.+ |+++++||||+++|+..
T Consensus 62 ~~~~~~~~~~~----~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~ 124 (220)
T 2cvh_A 62 LVQMAETRGLN----PEEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR 124 (220)
T ss_dssp HHHHHHTTTCC----HHHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred HHHHHHhcCCC----hHHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence 11000011111 1222222211 1 23334 46788889999986 99999999999999732
Q ss_pred ------HHHHHHHHHHHhhC-CCEEEEEecCccH------------HHHHhhCeEEEEecC
Q 045902 1058 ------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1058 ------~~~i~~~l~~l~~~-g~tvi~t~H~~~~------------~~~~~~D~v~~l~~g 1099 (1472)
...+++.|++++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 34566678888754 8999999997541 456789999999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-15 Score=163.70 Aligned_cols=167 Identities=15% Similarity=0.163 Sum_probs=110.3
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD 995 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~ 995 (1472)
|++++|+||||||||||+++|++. ..|.+.++|.+... ....|+++|.....+..|+++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 789999999999999999999973 24788998865321 1234677776644455688888766432110
Q ss_pred HHHHHHHHHcccccccccccCC---CCCCCC--CHHHHHHHHHHH------HHhhCCCCccccCCCCCCCHHHHHHHHHH
Q 045902 996 MFVEEVMELVEMKALRNSLVGL---PGVDGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAIVMRT 1064 (1472)
Q Consensus 996 ~~~~~v~~~l~l~~~~~~~~~~---~~~~~L--SgGqrqRl~iA~------aL~~~p~il~LDEPTsgLD~~~~~~i~~~ 1064 (1472)
. -+...+.+...+. ...+.+ |+|++|++.++. +|+.+|+...+|+ |||+..... ++.
T Consensus 71 -------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~ 138 (189)
T 2bdt_A 71 -------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEE 138 (189)
T ss_dssp -------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHH
T ss_pred -------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHH
Confidence 0 0000011110000 001124 888888888888 9999999999994 899988888 888
Q ss_pred HHHHhhCCCEEEEEecC-ccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1065 VRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1065 l~~l~~~g~tvi~t~H~-~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
++.+.+.+.+||.++|+ ++ ++.+.+|+++ +.|+++..|++.
T Consensus 139 ~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 139 FESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp HHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred HhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 88886667899999998 65 4778899998 468888888763
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-14 Score=150.80 Aligned_cols=140 Identities=15% Similarity=0.036 Sum_probs=90.2
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeEEeccCCCCCCCCCHHHHHHHHHHc
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-TFARISGYCEQNDIHSPNVTIYESLLYSAWL 990 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l 990 (1472)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|+.. +..|+.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 478999999999999999999999999732 58899998653221 11234678877654 457888988764321
Q ss_pred C--CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHH
Q 045902 991 R--LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068 (1472)
Q Consensus 991 ~--~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l 1068 (1472)
. ......++.+++..++..+.+. +. .+..+|+|++||+.++|++.++|+++ +|+.....+.+.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HhccCCeEEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 1 0000001111111111111110 11 12369999999999999999999987 6887777777766554
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-13 Score=164.18 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=108.1
Q ss_pred ccceeeccceeEEeCCeE--EEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVL--TALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
++.+ |++||+++++|++ +||+||||||||||+++|+|..- .|.-. ... .....++.++|++|++.+++.+
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCcccccc
Confidence 3345 9999999999999 99999999999999999999742 22111 110 1112345789999998888889
Q ss_pred CHHHHHHHHHHcCCC--ch-------HHHHHHHHHc-ccc----cccccc----cC--CCCCCCCCHHHHHHHHHHHHHh
Q 045902 979 TIYESLLYSAWLRLP--KD-------MFVEEVMELV-EMK----ALRNSL----VG--LPGVDGLSTEQRKRLTIAVELV 1038 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~--~~-------~~~~~v~~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqRl~iA~aL~ 1038 (1472)
||.|++.|+...... .. ...++.++.. +.. ...|.. +. .+...+|+-.+ +.|+++|.
T Consensus 98 tv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 98 TIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred chhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 999988664321100 00 1122223222 222 112221 11 11123577776 78999999
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHH-HhhCCCEEEEEecC
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1081 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~-l~~~g~tvi~t~H~ 1081 (1472)
.+++|+++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999987 77779999988764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-12 Score=157.06 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=97.1
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCee-EEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYI-EGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~-~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
.+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+... ..++.++|++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee----------
Confidence 3677776 79999999999999999999999999764 23 6899777765432 2345567888741
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
+++. ...+ +.+|+++|..+|++|++|||| |+.+...
T Consensus 191 ----------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~-- 226 (372)
T 2ewv_A 191 ----------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET-- 226 (372)
T ss_dssp ----------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH--
T ss_pred ----------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH--
Confidence 1110 1134 469999999999999999999 7766443
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
.++. +..|.+|++|+|..+ ..+.+||++.|.
T Consensus 227 -~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 227 -ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp -HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred -HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 3443 356999999999965 667888887664
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-12 Score=155.44 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=45.3
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 354 sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
+||++|..+|+++++|||| |..+...+. +.+. .|.++++++|..+ ..+.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~----~~~~-~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLAL----TAAE-TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHH----HHHH-TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHH----HHHh-cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 8999999999999999999 666544333 3343 5888888887765 33789999988654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-12 Score=156.50 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=100.2
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC-hhcccceeEEec-cCCCCCCCCCHHH
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK-QETFARISGYCE-QNDIHSPNVTIYE 982 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~-~~~~~~~~gyv~-Q~~~~~~~lTv~e 982 (1472)
+++++|+.+++|++++|+||||||||||+++|+|..++ .+|.|.++|.... ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998774 4899999985421 122456678888 54321
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHH
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1062 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~ 1062 (1472)
+++++..+|-.|+.++..+|+.+++|||+. ..+.
T Consensus 234 ---------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~ 267 (361)
T 2gza_A 234 ---------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAY 267 (361)
T ss_dssp --------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHH
T ss_pred ---------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHH
Confidence 012233456667777777899999999986 2455
Q ss_pred HHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 045902 1063 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1063 ~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~g 1099 (1472)
+.|+.+.....|++.++|..+ ....+||+..+..+
T Consensus 268 ~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 268 DFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp HHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 667776544568899999965 56788999998764
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-12 Score=157.01 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=85.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ -...+.++|+.|++..++.+||.
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 46899999998 99999999999999999998764311 2222222111 01124589999998888889999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.+...... .+ .... ..+++- ..+
T Consensus 94 Dt~g~~~~~~~-------------~~---------~~~~--------------i~~~i~------------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDN-------------SN---------CWQP--------------VIDYID------------------SKF 119 (418)
T ss_dssp ECC---------------------------------CHH--------------HHHHHH------------------HHH
T ss_pred echhhhhhccc-------------hh---------hHHH--------------HHHHHH------------------HHH
Confidence 99877532100 00 0000 011110 125
Q ss_pred ChHHHHHHHHHHHHhCCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 045902 346 SGGQKKRVTTGEMLVGPAK---ALFMDEIS-TGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~---illLDEpt-sgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q 404 (1472)
+++.++|+.|||+++.+|+ ++++|||| .|||+... +.++.+.. +.++|++++.
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 6677889999999999999 99999999 69998773 33444432 5667766654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-11 Score=126.58 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=70.0
Q ss_pred CCCCChHHHHHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 342 RRGISGGQKKRVTTGEMLV----GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~----~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
...||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|++.|++ .+.+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEE
Confidence 4569999999999999996 56899999999999999999999999998864 35666666653 5778999998
Q ss_pred Ee--cCCeE-EEecChhHHH
Q 045902 418 LL--SEGEI-VYQGPREYVL 434 (1472)
Q Consensus 418 lL--~~G~i-v~~G~~~~~~ 434 (1472)
.+ .+|.. +.....++..
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 65 46654 3344444443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-13 Score=155.76 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=97.5
Q ss_pred CCeEEEEEcCCCCChhHHHhhhc---CCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHH--
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLA---GRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW-- 989 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~---g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~-- 989 (1472)
++++++|+||||||||||+++|+ |... +..|+|.++|.+... ...+.+++++|+....+..|+.|++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 9765 457888887754321 122334566777777888899999876431
Q ss_pred ------c-CCCchH-HHHHHHHH--cc------------cccccccccCCCCCCCCCHHHHHHHHHHHHH-hhCCCCccc
Q 045902 990 ------L-RLPKDM-FVEEVMEL--VE------------MKALRNSLVGLPGVDGLSTEQRKRLTIAVEL-VANPSIIFM 1046 (1472)
Q Consensus 990 ------l-~~~~~~-~~~~v~~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL-~~~p~il~L 1046 (1472)
+ ..+... ..+.+.+. .+ +..+.++. +..||| |+ ++| +.+|++++|
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~lll 170 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVHGI 170 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSSTTB
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccccc
Confidence 1 112221 12222111 11 11122222 235888 66 677 999999999
Q ss_pred c----CCCCCCCHHHHHHHHHHHHHHhhC
Q 045902 1047 D----EPTSGLDARAAAIVMRTVRNTVDT 1071 (1472)
Q Consensus 1047 D----EPTsgLD~~~~~~i~~~l~~l~~~ 1071 (1472)
| |||+|||..+...+.+.++++.++
T Consensus 171 D~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 171 DDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 9 999999999999999999988655
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6e-13 Score=147.39 Aligned_cols=148 Identities=19% Similarity=0.193 Sum_probs=94.7
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH----HHHHH
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV----RETLD 269 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 269 (1472)
-..++|++++|+||||||||||+++|+|..+++ ..+|.|.+++.+.... .++.++|++|++..++.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998753 3589999988765432 23457899986544433333 12211
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
+. |+ ..|-.
T Consensus 89 ~~------------------------------------------------------------------~~-----~yg~~ 97 (219)
T 1s96_A 89 VF------------------------------------------------------------------GN-----YYGTS 97 (219)
T ss_dssp ET------------------------------------------------------------------TE-----EEEEE
T ss_pred HH------------------------------------------------------------------hc-----cCCCC
Confidence 11 00 01111
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecC
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~ 429 (1472)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.|++++.|++. ++. .|+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~-~l~---~Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKI-ELD---RRL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHH-HHH---HHH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHH-HHH---HHH--HHcC----CCC
Confidence 221 23444557999999 99999999998876 3677777665432 332 243 6777 577
Q ss_pred hhHHHHHH
Q 045902 430 REYVLDFF 437 (1472)
Q Consensus 430 ~~~~~~~F 437 (1472)
.+++..-+
T Consensus 155 ~e~i~~rl 162 (219)
T 1s96_A 155 EEVIAKRM 162 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-13 Score=148.33 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=87.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCCHHHHHHHhhh
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGR 273 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 273 (1472)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++..... .+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 6999999876533221 234567777543 35688888866432
Q ss_pred ccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHH
Q 045902 274 CLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRV 353 (1472)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRv 353 (1472)
.. ...... ...+.+++.++++...+. +.....+|+|++||+
T Consensus 78 ~~------------~~~~~~------------------------~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RY------------AKEGYF------------------------VILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HH------------HHTSCE------------------------EEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHH
T ss_pred HH------------hccCCe------------------------EEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHH
Confidence 10 000000 000000111111111100 011234999999999
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 045902 354 TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQM 390 (1472)
Q Consensus 354 sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l 390 (1472)
.++|++..+|+++ +|+.....+.+.++.+
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 9999999999876 6887766666665443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-14 Score=174.03 Aligned_cols=169 Identities=12% Similarity=0.056 Sum_probs=95.7
Q ss_pred eeeceeeEEeC--CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCce----eEEEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 188 ILHDVSGIVKP--SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVS----GRVTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 188 iL~~vs~~i~~--Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~----G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
+.+.|+..+++ |+.++|+||||||||||+++|+|.++++ + |+|.++++.. ..+..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-------------~~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-------------GDEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-------------SCTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-------------CCcccCCh
Confidence 45689999999 9999999999999999999999999886 6 6666532100 00001111
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
... +++.+... ... ....+..+ ++ . ++..+..++.
T Consensus 221 ~~~-~~I~~~~q------~~~-~~~~t~~~---nl------------------~-----------~~~~~~~~~~----- 255 (365)
T 1lw7_A 221 SDY-PQMALGHQ------RYI-DYAVRHSH---KI------------------A-----------FIDTDFITTQ----- 255 (365)
T ss_dssp TTH-HHHHHHHH------HHH-HHHHHHCS---SE------------------E-----------EESSCHHHHH-----
T ss_pred hHH-HHHHHHHH------HHH-HHHHhccC---CE------------------E-----------EEeCCchHHH-----
Confidence 122 33333210 000 00000000 00 0 0000000111
Q ss_pred CCCCChHHHHHHHHHHHHh-CCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHh
Q 045902 342 RRGISGGQKKRVTTGEMLV-GPAKALFMDE---IS------TGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~-~~p~illLDE---pt------sgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~ 411 (1472)
...+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++.. +|. +..+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~~-~~~r 333 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SPS-YLDR 333 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CSS-HHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CCC-HHHH
Confidence 1126677788888888775 5899999999 65 589999999999999887665566766654 443 3444
Q ss_pred ccCeEEEe
Q 045902 412 LFDDIILL 419 (1472)
Q Consensus 412 ~fD~iilL 419 (1472)
++|.+.++
T Consensus 334 ~~~~i~~i 341 (365)
T 1lw7_A 334 YNQVKAVI 341 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=135.12 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=59.7
Q ss_pred CChHH--HHHHHHHHHHhCC-CcEeEEeCCCCCCCHHH--------HHHHHHHHHHHHHhCCcEEEEEEecCcc------
Q 045902 345 ISGGQ--KKRVTTGEMLVGP-AKALFMDEISTGLDSST--------TFQIVRFMRQMVHITDVTMIISLLQPAP------ 407 (1472)
Q Consensus 345 LSGGq--rkRvsia~aL~~~-p~illLDEptsgLDs~t--------~~~i~~~L~~l~~~~~~tvii~~~q~~~------ 407 (1472)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.|++++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45554 5688888999986 99999999999999743 2456677888887778888877665431
Q ss_pred ------hHHhccCeEEEecCC
Q 045902 408 ------ETYDLFDDIILLSEG 422 (1472)
Q Consensus 408 ------~~~~~fD~iilL~~G 422 (1472)
.+.+.+|.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 456789999999754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.6e-12 Score=149.21 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=95.0
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-CCceEEEEc-CCCCC--CCCCC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-PQRTCAYIS-QHDLH--HGEMT 263 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 263 (1472)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 349999999999999999999999999999999999987 899999985311111 245678888 54332 13334
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
++
T Consensus 241 ~~------------------------------------------------------------------------------ 242 (361)
T 2gza_A 241 AA------------------------------------------------------------------------------ 242 (361)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
..|+.++..+|+.+++||+.. .++.+.++.+.. ...|++.++|..+ ....+||+..+..|.
T Consensus 243 ---------~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 243 ---------TLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---------HHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---------HHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 444455556789999999985 234455655543 3456677777654 667789998887764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-14 Score=167.12 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCCC------CeeEEEEEEcCccCCh------------------hcccceeEEe---c
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKTG------GYIEGSISISGYPKKQ------------------ETFARISGYC---E 969 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~~------~~~~G~i~i~G~~~~~------------------~~~~~~~gyv---~ 969 (1472)
++++|+|+||||||||++.|+|...+ .+..|+|.+||.++.. ..+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999987521 1247899999977532 1233446666 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--H----c-CCCchH---HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhh
Q 045902 970 QNDIHSPNVTIYESLLYSA--W----L-RLPKDM---FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVA 1039 (1472)
Q Consensus 970 Q~~~~~~~lTv~e~l~~~~--~----l-~~~~~~---~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~ 1039 (1472)
|+....++.++.|+..++. . + ..+... .++.+++.+++.+..+... .+|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 7666566777777654320 0 0 000000 0011122223333333321 589999999999999999
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1040 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1040 ~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99988 999 67888888875 5899999999753
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.9e-13 Score=138.30 Aligned_cols=78 Identities=22% Similarity=0.087 Sum_probs=65.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
+.+++++|+.+++|++++|+||||||||||+++|+|.+ +. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999998 76 899999998764211111 2789998888 89999
Q ss_pred HHHHH
Q 045902 266 ETLDF 270 (1472)
Q Consensus 266 E~l~f 270 (1472)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-13 Score=165.63 Aligned_cols=163 Identities=11% Similarity=0.068 Sum_probs=97.5
Q ss_pred eeccceeEEeC--CeEEEEEcCCCCChhHHHhhhcCCCCCCeeE----EEEEEc----CccC--ChhcccceeEEeccCC
Q 045902 905 LLQDVSGAFRP--GVLTALVGVSGAGKTTLMDVLAGRKTGGYIE----GSISIS----GYPK--KQETFARISGYCEQND 972 (1472)
Q Consensus 905 iL~~vs~~i~~--Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~----G~i~i~----G~~~--~~~~~~~~~gyv~Q~~ 972 (1472)
+.+.|++.|++ |+.++|+||||||||||+++|+|...+ .+ |+|.++ |.+. ....+ +.++|++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 45789999999 999999999999999999999998763 35 555543 2111 00011 1122222211
Q ss_pred CCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCCCccccC---
Q 045902 973 IHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV-ANPSIIFMDE--- 1048 (1472)
Q Consensus 973 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~-~~p~il~LDE--- 1048 (1472)
..+ ..|+.||+.+ ++ .+..+.. ...+|+|++||..+++++. .+|++++|||
T Consensus 234 ~~~-~~t~~~nl~~------------------~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~ 288 (365)
T 1lw7_A 234 IDY-AVRHSHKIAF------------------ID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT 288 (365)
T ss_dssp HHH-HHHHCSSEEE------------------ES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCC
T ss_pred HHH-HHhccCCEEE------------------Ee-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 000 0011111100 00 0011111 1135677788888888775 5999999999
Q ss_pred CC------CCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1049 PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1049 PT------sgLD~~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
|+ .++|...+..+.+.|+++.+ .|.+||+++|. + .....+|++.+++
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999998754 48899999974 3 3445556555553
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-14 Score=152.69 Aligned_cols=173 Identities=10% Similarity=0.037 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 278 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 278 (1472)
|++++|+||||||||||+++|++. . +|.+.++|.++... ...++++|.+...+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 689999999999999999999972 2 68899998765432 123566665544445678888766432100
Q ss_pred chhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC--ChHHHHHHHHH
Q 045902 279 TRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI--SGGQKKRVTTG 356 (1472)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL--SGGqrkRvsia 356 (1472)
. .+ . ....+ .+...... +..+.+ |+|+++|+.++
T Consensus 71 ----------~----~~------------------~--~~ild----~~~~~~~~------~~~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 71 ----------L----AQ------------------N--DVVLD----YIAFPDEA------EALAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp ----------H----TT------------------C--EEEEE----SCCCHHHH------HHHHHHHHHHCSSEEEEEE
T ss_pred ----------h----cC------------------C--cEEEe----eccCHHHH------HHHHHHHHhcccCCCeEEE
Confidence 0 00 0 00000 00000000 001124 88999888877
Q ss_pred H------HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecCh
Q 045902 357 E------MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPR 430 (1472)
Q Consensus 357 ~------aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~~ 430 (1472)
. +++.+++...+|+ +||+..... .+.++.+.. .+.++|.+.|....++.+.+|+|+ ++|+++.+|++
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~ 179 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAG 179 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecC
Confidence 7 8888888888884 899988888 888877643 456777766552457778899998 99999999987
Q ss_pred hHH
Q 045902 431 EYV 433 (1472)
Q Consensus 431 ~~~ 433 (1472)
+-+
T Consensus 180 ~~~ 182 (189)
T 2bdt_A 180 DPL 182 (189)
T ss_dssp ---
T ss_pred Cch
Confidence 654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.8e-12 Score=150.60 Aligned_cols=167 Identities=17% Similarity=0.135 Sum_probs=101.5
Q ss_pred eeceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC---CCCceEEEEcCCCCCCCCCC
Q 045902 189 LHDVSGIVKPSRM--TLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF---VPQRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 189 L~~vs~~i~~Ge~--~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lT 263 (1472)
|+|+|+.+++|++ ++|+||||||||||+|+|+|..- .| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 99999999999999999999741 22 222111 11346899999998888999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh-CCc----cccccc--
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL-GLD----ICADIM-- 336 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~----~~~dt~-- 336 (1472)
|.||+.|+.... ....... +..+++. ..+..+... ++. ...|+.
T Consensus 99 v~D~~~~g~~~~----~~~~~~~---------------i~~~i~~----------q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----KEDSYKP---------------IVEFIDA----------QFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----HHHHSHH---------------HHHHHHH----------HHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----cchhhhH---------------HHHHHHH----------HHHHHHHHHHhhhhhhccccccccc
Confidence 999997753211 0000000 0011100 011222222 333 112322
Q ss_pred --cc--CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEE
Q 045902 337 --VG--NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ-MVHITDVTMI 399 (1472)
Q Consensus 337 --vg--~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~-l~~~~~~tvi 399 (1472)
+. .+...+|+-.+ +.|+++|..+++++++|||+..|.......+.+.+++ +.. .|..++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~ 213 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIY 213 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCC
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEE
Confidence 11 11124577666 7899999999999999999999999988888888886 543 455443
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-11 Score=134.45 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=88.7
Q ss_pred eccce-eEEeCCeEEEEEcCCCCChhHHHhhhcC--CCCC---CeeEEEEEEcCccC-Chhc---ccceeEEeccCCCCC
Q 045902 906 LQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTG---GYIEGSISISGYPK-KQET---FARISGYCEQNDIHS 975 (1472)
Q Consensus 906 L~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g--~~~~---~~~~G~i~i~G~~~-~~~~---~~~~~gyv~Q~~~~~ 975 (1472)
|+.+- +-+++|++++|+||||||||||++.|++ ...+ +...|.+.+++... .... ..+.+++.+
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~------ 86 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSG------ 86 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH------
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCH------
Confidence 44433 6799999999999999999999999998 3321 11256777776542 1110 111112111
Q ss_pred CCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHH-HHHHHHHh--hCCCCccccCCCCC
Q 045902 976 PNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKR-LTIAVELV--ANPSIIFMDEPTSG 1052 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqR-l~iA~aL~--~~p~il~LDEPTsg 1052 (1472)
+++++.+... ...+..+... +.-+.+++ .+|+++++||||+.
T Consensus 87 -----------------------~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 87 -----------------------SDVLDNVAYA------------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp -----------------------HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred -----------------------HHHhhCeEEE------------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 1122211110 1244444332 33344444 48999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHhhC-CCEEEEEecCccHH------------------HHHhhCeEEEEecC
Q 045902 1053 LDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFEAFDELFLMKRG 1099 (1472)
Q Consensus 1053 LD~~-------~-----~~~i~~~l~~l~~~-g~tvi~t~H~~~~~------------------~~~~~D~v~~l~~g 1099 (1472)
+|+. + ...+++.|++++++ |+|||+++|..... +...+|.+++|.++
T Consensus 132 ~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 132 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 9985 3 34566667776654 99999999964321 11168999999863
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-12 Score=136.04 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=66.1
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCH
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
+++.++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++... .. ...+++|+..++ .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~-~~-~~~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEE-YN-IAGKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEE-EE-ETTEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeee-cc-CCCcceeccccc-cCCc
Confidence 3457899999999999999999999999999999999977 3 479999999876422 11 113789988788 8999
Q ss_pred HHHHHH
Q 045902 981 YESLLY 986 (1472)
Q Consensus 981 ~e~l~~ 986 (1472)
.|++.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-12 Score=152.02 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=102.6
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------c--ccceeEEeccCCCCCC
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------T--FARISGYCEQNDIHSP 976 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~--~~~~~gyv~Q~~~~~~ 976 (1472)
-+++|+++++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 368999999999999999999999999999999765 2368999987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh-hCCC-CccccCCCCCCC
Q 045902 977 NVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV-ANPS-IIFMDEPTSGLD 1054 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~-~~p~-il~LDEPTsgLD 1054 (1472)
..|+++++.+...-... . -+++..|+.+... .+-..-+|++.+++++. ..|. +||...||+|.|
T Consensus 361 ~~tV~e~l~~a~~~~~D---v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~ 426 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID---V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN 426 (503)
T ss_dssp HHHHHHHHHHHHHTTCS---E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH
T ss_pred HHHHHHHHHHHHhcCCC---E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH
Confidence 89999999876431110 0 0111111111111 12234457888888764 4564 555555888866
Q ss_pred HHHHHHHHHHHHHHhh-CCCEEEEEec
Q 045902 1055 ARAAAIVMRTVRNTVD-TGRTVVCTIH 1080 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~-~g~tvi~t~H 1080 (1472)
.. +.++.+.+ -|.|.|++||
T Consensus 427 al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 427 AV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HH------HHHHHHHHHTCCSEEEEEC
T ss_pred HH------HHHHHHHhhcCCCEEEEEc
Confidence 54 23444432 3789999999
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.11 E-value=4e-13 Score=142.76 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---C---C-ceEE----EEcCCCCCCCCCCHHHHH
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---P---Q-RTCA----YISQHDLHHGEMTVRETL 268 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~---~-~~~~----yv~Q~d~~~~~lTV~E~l 268 (1472)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. . + +.++ +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998764333699999998865432 1 1 2345 777765544 000
Q ss_pred HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHH-hCCcccccccccCccCCCCCh
Q 045902 269 DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKI-LGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 269 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~-lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+ . . +. .+ ..+.+++. + + ..||.+++ +|||
T Consensus 77 -------~--~-~----~~-----~a------------------------~l~~~i~~~l--~-g~dt~i~E----glSg 106 (171)
T 2f1r_A 77 -------V--S-E----EE-----GN------------------------DLDWIYERYL--S-DYDLVITE----GFSK 106 (171)
T ss_dssp -------C--C-H----HH-----HT------------------------CHHHHHHHHT--T-TCSEEEEE----SCGG
T ss_pred -------C--C-h----hh-----hh------------------------CHHHHHHhhC--C-CCCEEEEC----CcCC
Confidence 0 0 0 00 00 11223343 3 2 46899986 5999
Q ss_pred HHHHHHHHHHHHhCCCcEe-------EEeCCCCC---CCHHHHHHHHHHHHHHHHhC
Q 045902 348 GQKKRVTTGEMLVGPAKAL-------FMDEISTG---LDSSTTFQIVRFMRQMVHIT 394 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~il-------lLDEptsg---LDs~t~~~i~~~L~~l~~~~ 394 (1472)
|||||++|||+++++|++. .-|.|..+ +|......+.+.+.+.....
T Consensus 107 Gq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 107 AGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp GCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 9999999999999999873 22444322 34455667777776655433
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-11 Score=129.92 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=45.8
Q ss_pred CCCChHHHHH-HHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 045902 343 RGISGGQKKR-VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 343 ~gLSGGqrkR-vsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
..+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.++..
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3499999999 8999999999999999999999999999999999988765
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.10 E-value=9.6e-13 Score=148.67 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=96.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhc
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALS---GKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 274 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~---G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 274 (1472)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.++.|+...++..|+.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 988775 7888887754221 0112345567777788888999999764321
Q ss_pred -cCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhcccc----ccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 275 -LGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLK----TSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
.+.+... .+. +... ............. -....+.+++. ..+..+ ..+||
T Consensus 102 ~~~~~~il------------~g~-~~~~-~~~~~l~~~~~~~~vi~L~~~~~~~l~r-----~~~r~~-----~~lSg-- 155 (246)
T 2bbw_A 102 RRGQHWLL------------DGF-PRTL-GQAEALDKICEVDLVISLNIPFETLKDR-----LSRRWI-----HPPSG-- 155 (246)
T ss_dssp CTTSCEEE------------ESC-CCSH-HHHHHHHTTCCCCEEEEEECCHHHHHHH-----HHTEEE-----ETTTT--
T ss_pred cCCCeEEE------------ECC-CCCH-HHHHHHHhhcCCCEEEEEECCHHHHHHH-----HHcCCC-----cCCCC--
Confidence 0000000 000 0000 0000000000000 00001111111 123233 34999
Q ss_pred HHHHHHHHHH-hCCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHH
Q 045902 350 KKRVTTGEML-VGPAKALFMD----EISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 350 rkRvsia~aL-~~~p~illLD----EptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
|| +++ +.+|++++|| |||+|||..+...+.+.++++.+
T Consensus 156 --rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 156 --RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp --EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred --Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 66 677 9999999999 99999999999999999988765
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-10 Score=140.22 Aligned_cols=77 Identities=26% Similarity=0.354 Sum_probs=67.5
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1021 DGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1021 ~~LSgGqrqRl------~iA~aL~~~-p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567888999 99999999999999999999999999974 3579999999975 56789999
Q ss_pred EEEecCc
Q 045902 1094 FLMKRGG 1100 (1472)
Q Consensus 1094 ~~l~~gg 1100 (1472)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998544
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-12 Score=138.68 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCCC-CeeEEEEEEcCccCC------hhccc-ceeE----EeccCCCCCCCCCHHHHH
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISISGYPKK------QETFA-RISG----YCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~G~~~~------~~~~~-~~~g----yv~Q~~~~~~~lTv~e~l 984 (1472)
++++|+|+||||||||++.|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999997552 233799999998732 22344 3566 788876654 110
Q ss_pred HHHHHcCCCchH--HHHHHHHH-cccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCc-------cccCCCCC--
Q 045902 985 LYSAWLRLPKDM--FVEEVMEL-VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSII-------FMDEPTSG-- 1052 (1472)
Q Consensus 985 ~~~~~l~~~~~~--~~~~v~~~-l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il-------~LDEPTsg-- 1052 (1472)
...+. ..++.++. +. + .|+.++ .+||||||||++|||+++.+|++. .-|.|..+
T Consensus 77 -------~~~~~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -------VSEEEGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -------CCHHHHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -------CChhhhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 00011 23444444 43 2 355554 369999999999999999999874 23454322
Q ss_pred -CCHHHHHHHHHHHHHHhhCCC
Q 045902 1053 -LDARAAAIVMRTVRNTVDTGR 1073 (1472)
Q Consensus 1053 -LD~~~~~~i~~~l~~l~~~g~ 1073 (1472)
+|......+.+.|.+...+|.
T Consensus 143 ~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp EECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccHHHHHHHHHHHHhccC
Confidence 233445566666666555543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.5e-11 Score=123.58 Aligned_cols=95 Identities=15% Similarity=0.238 Sum_probs=70.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE--EEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG--SISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G--~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
.+|+++ +|+.++|+||||+|||||+++|++.... +| .+.+++.+. ...
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~-----------------~~~----- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASM-----------------PLT----- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTS-----------------CCC-----
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHh-----------------hHH-----
Confidence 456666 8999999999999999999999996532 23 333333221 100
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
+++.+|++|++|||++ +|...+..+
T Consensus 79 ------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l 103 (149)
T 2kjq_A 79 ------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALL 103 (149)
T ss_dssp ------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHH
T ss_pred ------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHH
Confidence 1246799999999998 665558889
Q ss_pred HHHHHHHhhCCCE-EEEEecCcc
Q 045902 1062 MRTVRNTVDTGRT-VVCTIHQPS 1083 (1472)
Q Consensus 1062 ~~~l~~l~~~g~t-vi~t~H~~~ 1083 (1472)
.+++.++.++|++ +|+++|.+.
T Consensus 104 ~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 104 FSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHcCCcEEEEECCCCH
Confidence 9999998877888 899999643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-11 Score=141.09 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=78.3
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEc-CccCChhcccceeEEeccCCCCCCCCCHHHHH
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS-GYPKKQETFARISGYCEQNDIHSPNVTIYESL 984 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 984 (1472)
+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.+.. ....+.+++++|+..+++..|++|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 4444443 47999999999999999999999997651 247999887 75543 23456789999998888888998842
Q ss_pred HHHHHcCCCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 045902 985 LYSAWLRLPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVEL 1037 (1472)
Q Consensus 985 ~~~~~l~~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL 1037 (1472)
. ...+.+ ....++++.+++.++.+... .++| ||+||++||+++
T Consensus 283 l----~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 L----WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C----CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h----cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 122222 22446677777777666553 4799 999999999864
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-12 Score=153.13 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=105.4
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cccceeEEeccCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TFARISGYCEQNDIH 974 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~~~~~gyv~Q~~~~ 974 (1472)
...+|+++|+++++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3568999999999999999999999999999999999754 2368899988765321 234568999998877
Q ss_pred CCCC------------CHHHHHHHHHH-----------------------------cCCCc-hHHHH----HHHHHcccc
Q 045902 975 SPNV------------TIYESLLYSAW-----------------------------LRLPK-DMFVE----EVMELVEMK 1008 (1472)
Q Consensus 975 ~~~l------------Tv~e~l~~~~~-----------------------------l~~~~-~~~~~----~v~~~l~l~ 1008 (1472)
++.. +++|.+..... +..+. ....+ .+.+...+.
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 6432 23333311000 00000 00000 111222221
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhh------CCCCccccCCCCCCCHHHHHHHHHHHHHHh
Q 045902 1009 ALRNSLVGLPGVDGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069 (1472)
Q Consensus 1009 ~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~------~p~il~LDEPTsgLD~~~~~~i~~~l~~l~ 1069 (1472)
.+ |+.. ......+|+|++|++..+++++. +|++++ ||++|......+++.|.++.
T Consensus 199 vl-NK~D-l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 199 AV-NKAD-DGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EE-ECCS-TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EE-Echh-ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 11 2111 00113579999999999999987 688876 99999999999999998864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.2e-12 Score=151.49 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=68.3
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC------C---CCceEEEEcCCCCCC
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF------V---PQRTCAYISQHDLHH 259 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 259 (1472)
-+++|+.+++|++++|+|+||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998776 79999987765431 0 134689999998888
Q ss_pred CCCCHHHHHHHhh
Q 045902 260 GEMTVRETLDFSG 272 (1472)
Q Consensus 260 ~~lTV~E~l~f~~ 272 (1472)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998753
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-11 Score=144.88 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=91.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHH
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRET 267 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 267 (1472)
+|++++ +++|++++|+|||||||||||++|+|.++++ .+|+|.+.|.++. ...++.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 7999999999999999999999999988652 1599977775543 22334456666631
Q ss_pred HHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCCh
Q 045902 268 LDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISG 347 (1472)
Q Consensus 268 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSG 347 (1472)
+|++ ...+
T Consensus 191 -----------------------------------------------------------~g~~-----------~~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED-----------TKSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT-----------BSCS--
T ss_pred -----------------------------------------------------------cCCC-----------HHHH--
Confidence 0000 0113
Q ss_pred HHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 348 GQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 348 GqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
+.+|+++|..+|+++++|||+ |..+... .++. + ..|.++++++|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~-~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-A-ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-H-TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-H-hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 2 2567877776653 4677788877664
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-10 Score=139.74 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1021 DGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~----~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|+|++ ...+.+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 57999999999999999999999999999876688999999994 467889999999
Q ss_pred ec
Q 045902 1097 KR 1098 (1472)
Q Consensus 1097 ~~ 1098 (1472)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-11 Score=129.90 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=42.7
Q ss_pred HhhCCCCccccCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCccH
Q 045902 1037 LVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1084 (1472)
Q Consensus 1037 L~~~p~il~LDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~ 1084 (1472)
.+.+|++|+||||++ ++|+.....+.+++.+..++|+++|+|||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 356999999999995 999999999999999888789999999998753
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-11 Score=144.56 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=93.3
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cccce--eEEeccCCCCCCCCCHHHH
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE-------TFARI--SGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~-------~~~~~--~gyv~Q~~~~~~~lTv~e~ 983 (1472)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+++. +.+++|.....|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 47899999999999999999999999765 3478999999875321 12333 4489999988999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHH
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~ 1063 (1472)
+.+........ .+++..|+.+..+ .=.++.-.|++++..++.+++||.+| | ..+++
T Consensus 204 l~~~~~~~~d~-----vliDtaG~~~~~~------------~l~~eL~~i~ral~~de~llvLDa~t-~------~~~~~ 259 (328)
T 3e70_C 204 IQHAKARGIDV-----VLIDTAGRSETNR------------NLMDEMKKIARVTKPNLVIFVGDALA-G------NAIVE 259 (328)
T ss_dssp HHHHHHHTCSE-----EEEEECCSCCTTT------------CHHHHHHHHHHHHCCSEEEEEEEGGG-T------THHHH
T ss_pred HHHHHhccchh-----hHHhhccchhHHH------------HHHHHHHHHHHHhcCCCCEEEEecHH-H------HHHHH
Confidence 98653211100 0011111111111 11223334788887666666666443 3 45566
Q ss_pred HHHHHhh-CCCEEEEEecC
Q 045902 1064 TVRNTVD-TGRTVVCTIHQ 1081 (1472)
Q Consensus 1064 ~l~~l~~-~g~tvi~t~H~ 1081 (1472)
.++.+.+ .+.|+|++||.
T Consensus 260 ~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 260 QARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHSCCCEEEEECG
T ss_pred HHHHHHHhcCCCEEEEeCc
Confidence 6666653 48999999994
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-13 Score=164.44 Aligned_cols=173 Identities=12% Similarity=0.041 Sum_probs=107.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCC---------
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI--------- 973 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~--------- 973 (1472)
..+++++++.+++|+.++|+|||||||||||++|+|..++ .+|.|.++|.+.-.......+++..|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4588999999999999999999999999999999998764 47999999865211111223444444322
Q ss_pred -------------CCCCCCHHHHHHHHHHcCCC-------chHHHHHHHHHccccc--ccccccCC-----CCCCCCCHH
Q 045902 974 -------------HSPNVTIYESLLYSAWLRLP-------KDMFVEEVMELVEMKA--LRNSLVGL-----PGVDGLSTE 1026 (1472)
Q Consensus 974 -------------~~~~lTv~e~l~~~~~l~~~-------~~~~~~~v~~~l~l~~--~~~~~~~~-----~~~~~LSgG 1026 (1472)
+...++..|++.+....... +....+++++.+.... +...+... .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 12345555554332211110 0122344555544421 11111100 001247999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEE--EecCccHHHHHhh
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAF 1090 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~--t~H~~~~~~~~~~ 1090 (1472)
||||++++.+ | |+|||+.+...+++.|.++.+.|+|+++ ++|+.+ ++...+
T Consensus 405 ~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 405 TRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp CEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999877521 7 9999998887777777777666889875 889754 343343
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=129.25 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=42.6
Q ss_pred CCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEecCcch------------------HH
Q 045902 361 GPAKALFMDEISTGLDSS-------T-----TFQIVRFMRQMVHITDVTMIISLLQPAPE------------------TY 410 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~-------t-----~~~i~~~L~~l~~~~~~tvii~~~q~~~~------------------~~ 410 (1472)
.+|+++++|||++.+|+. + ..++++.|+++++..+.|++++.|..... +.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999975 3 34567777777777788888876533211 22
Q ss_pred hccCeEEEecCC
Q 045902 411 DLFDDIILLSEG 422 (1472)
Q Consensus 411 ~~fD~iilL~~G 422 (1472)
.++|.+++|+.|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 378999999865
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-11 Score=140.65 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=79.2
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-CCCCceeEEEEc-CeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD-KSLRVSGRVTYC-GHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~-~~~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.+++++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4555554 4899999999999999999999999988 76 8999987 765432 23457899999998899989998
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
+ .. .+. ...+.. ...+.+++.+|+.+..|.... ++|
T Consensus 281 ~---~l--~~l----------~~~e~~------------------------~~~~e~l~~~gl~~f~~~~~~-----~lS 316 (358)
T 2rcn_A 281 F---GL--WHL----------EPEQIT------------------------QGFVEFHDYLGHCKYRDCKHD-----ADP 316 (358)
T ss_dssp C---CC--CCC----------CHHHHH------------------------HTSGGGGGGTTCSSSTTCCSS-----SCT
T ss_pred h---hh--cCC----------CHHHHH------------------------HHHHHHHHHcCCchhcCCCcc-----cCC
Confidence 4 11 110 000000 012335667788777776554 499
Q ss_pred hHHHHHHHHHHHH
Q 045902 347 GGQKKRVTTGEML 359 (1472)
Q Consensus 347 GGqrkRvsia~aL 359 (1472)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999765
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-11 Score=145.99 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=92.8
Q ss_pred eccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCC----------CCC
Q 045902 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQND----------IHS 975 (1472)
Q Consensus 906 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~----------~~~ 975 (1472)
-++|++++++|+.++|+|+|||||||||++|+|..+ .+.+++.. +....+|++.+++ .+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCcceEEEEeccccc
Confidence 379999999999999999999999999999999742 22333221 1112234444432 221
Q ss_pred CCCCHHHHHHHHHHcCCCchHHHHH---HHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCC
Q 045902 976 PNVTIYESLLYSAWLRLPKDMFVEE---VMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1052 (1472)
Q Consensus 976 ~~lTv~e~l~~~~~l~~~~~~~~~~---v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsg 1052 (1472)
.... +. ..+. ....+. +-..+.+.++.+. ....||+|++||+.+|++|+.+|.||++ ++
T Consensus 217 ~~a~--~~------~~L~-~~fl~~~era~~lL~vvDls~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 217 EGAS--EG------KGLG-LEFLRHIARTRVLLYVLDAADE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp CCGG--GS------CCSC-HHHHHHHTSSSEEEEEEETTSC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred cchh--hh------hhhh-HHHHHHHHHHHhhhEEeCCccC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 1100 00 0000 011111 1111111122111 1346999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHH-hhCCCEEEEEecCccHHHHHhhCeE
Q 045902 1053 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDEL 1093 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l-~~~g~tvi~t~H~~~~~~~~~~D~v 1093 (1472)
+|...+ ..++.+++. .+.|.+++.+|..-...+-++++.+
T Consensus 279 lDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 279 VDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 998776 444444444 4457777665543333455555544
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-12 Score=153.71 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC--------CCCCCceeEEEEcCeeCCCCCC------------------CceEEEE
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS--------DKSLRVSGRVTYCGHELTEFVP------------------QRTCAYI 252 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~--------~~~~~~~G~I~~~G~~~~~~~~------------------~~~~~yv 252 (1472)
=++++|+|+||||||||||.|.|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 344 7999999988765421 1234455
Q ss_pred ---cCCCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCC
Q 045902 253 ---SQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGL 329 (1472)
Q Consensus 253 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL 329 (1472)
+|+...++..+|.||..++.. ......+.. +++.. . ....+.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p-------~~~~~~~~~---------~~~~~---~---------~~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADP-------GPIIQTFFS---------HEVLC---Q---------RYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCH-------HHHHHHHHH---------SHHHH---H---------HEEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCH-------HHHHHHHhc---------Ccccc---C---------eEEECCEEEEEEH
Confidence 455544556666666544310 000000000 00000 0 0000111222333
Q ss_pred cccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 045902 330 DICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPA 406 (1472)
Q Consensus 330 ~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~ 406 (1472)
.+..+... .+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+++++.|.+.
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 33333322 38999999998888888888877 888 67788888764 4678888777643
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.3e-12 Score=147.89 Aligned_cols=183 Identities=13% Similarity=0.069 Sum_probs=108.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-------CCceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-------PQRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 258 (1472)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.++ +|+|.+.|.++.... .++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999998776 799999998774321 23568999998877
Q ss_pred CCCC---------C---HHHHHHHh-h---hc---cCCCchhHHHHHhhHHHHhcCC----CCChhHHHHHHHHHhcccc
Q 045902 259 HGEM---------T---VRETLDFS-G---RC---LGVGTRFELLAELSRREKDAGI----KPDPEIDAFMKATAMSGLK 315 (1472)
Q Consensus 259 ~~~l---------T---V~E~l~f~-~---~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 315 (1472)
++.. | ++|.+... . .. ..+|.+.... .+ +..... .....-+.. ...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~-~v---~~~~d~vl~v~d~~~~~~~------~~i- 187 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET-AV---ADLTDFFLVLMLPGAGDEL------QGI- 187 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH-HH---HTTSSEEEEEECSCC------------C-
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh-hH---HhhCCEEEEEEcCCCcccH------HHH-
Confidence 7532 2 33332110 0 00 0111100000 00 000000 000000000 000
Q ss_pred ccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 045902 316 TSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVG------PAKALFMDEISTGLDSSTTFQIVRFMRQ 389 (1472)
Q Consensus 316 ~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~------~p~illLDEptsgLDs~t~~~i~~~L~~ 389 (1472)
......+...+.+ +..|.. ....+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 188 -~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 188 -KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp -CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred -HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 0001111112222 222211 013479999999999999887 588877 999999999999999987
Q ss_pred HHH
Q 045902 390 MVH 392 (1472)
Q Consensus 390 l~~ 392 (1472)
...
T Consensus 258 ~~~ 260 (337)
T 2qm8_A 258 HRS 260 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-11 Score=143.36 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=61.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---------CceEEEEcCCCCCCCCCCHHH
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---------QRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.++..... +..+.+++|+....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999998876 8999999998754321 123569999999999999999
Q ss_pred HHHHh
Q 045902 267 TLDFS 271 (1472)
Q Consensus 267 ~l~f~ 271 (1472)
++.++
T Consensus 203 ~l~~~ 207 (328)
T 3e70_C 203 AIQHA 207 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99765
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-11 Score=144.61 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=96.6
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHH
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETL 268 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 268 (1472)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+... ..++++.+++. ..+++.|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecCc--ceEEEEecc
Confidence 379999999999999999999999999999999742 12333333222 24566665441 111222221
Q ss_pred HH---hhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 269 DF---SGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 269 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
-+ +....+.+.. +.+.. ..++.++..++++ + .....+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~~~--------era~~lL~vvDls---~-----~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLRHI--------ARTRVLLYVLDAA---D-----EPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHHHH--------TSSSEEEEEEETT---S-----CHHHHH
T ss_pred ccccchhhhhhhhHH------------------------HHHHH--------HHHHhhhEEeCCc---c-----CCHHHH
Confidence 11 0000000000 00000 0011122223332 2 223349
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
|+||+||+.+|++|...|.++++ +++|...+ ..++.+++..+..+.+++.+.......+-++++
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 99999999999999999999999 99999877 555555555444566665544333333433333
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.9e-11 Score=137.61 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=83.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 276 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 276 (1472)
+++.+++|.||+|||||||.+.|++.+.+. | . ..+.+.+|+|++.+++. ++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 467899999999999999999999987642 2 0 12345666999988864 88999877521000
Q ss_pred CCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCc--c--cccccccCccCCCCChHHHHH
Q 045902 277 VGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLD--I--CADIMVGNEMRRGISGGQKKR 352 (1472)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~--~--~~dt~vg~~~~~gLSGGqrkR 352 (1472)
. + ...+.....+.+.+ ...++.+.-. . .....+. .+...+||||+||
T Consensus 92 l---------~----~~~g~p~a~d~~~l---------------~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R 142 (290)
T 1odf_A 92 L---------L----QGRGLPGTHDMKLL---------------QEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDR 142 (290)
T ss_dssp G---------G----SSSCSTTSBCHHHH---------------HHHHHHHTC------CCEEEEC-CEETTHHHHTCEE
T ss_pred h---------h----hhccCcchhHHHHH---------------HHHHHHhhccCccccCcceeec-cCccccCCccccc
Confidence 0 0 00000000011111 1223333221 0 0111121 3446799999999
Q ss_pred HHHH--HHHhCCCcEeEEeCCCCCCCHHH
Q 045902 353 VTTG--EMLVGPAKALFMDEISTGLDSST 379 (1472)
Q Consensus 353 vsia--~aL~~~p~illLDEptsgLDs~t 379 (1472)
+.+| +++ +|+|+|+||++++||+..
T Consensus 143 ~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 143 CPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cccccceEc--CCCEEEEeCccccCCccc
Confidence 9997 555 999999999999999864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.5e-12 Score=151.73 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=95.2
Q ss_pred hhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hccccee
Q 045902 893 MKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETFARIS 965 (1472)
Q Consensus 893 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~~~~~ 965 (1472)
+++.+..++...+|+++ + .++|++++|+|||||||||||++|+|...+ .+|+|.+.|.|+.. ....+.+
T Consensus 146 l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~ 221 (418)
T 1p9r_A 146 LHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRV 221 (418)
T ss_dssp GGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGG
T ss_pred HHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEcccc
Confidence 34445555556689998 5 489999999999999999999999997653 36899998877531 1123334
Q ss_pred EEec---------cCCCC--CCC----CCHHHHHHHHHH-------cCCCchHHHHHHHHHcccccccccccCCCCCCCC
Q 045902 966 GYCE---------QNDIH--SPN----VTIYESLLYSAW-------LRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGL 1023 (1472)
Q Consensus 966 gyv~---------Q~~~~--~~~----lTv~e~l~~~~~-------l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~L 1023 (1472)
|+.+ |++.. ... .|+.+++.+... +.........+.+..+++.... . ...|
T Consensus 222 g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~-----~~~L 294 (418)
T 1p9r_A 222 DMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--I-----SSSL 294 (418)
T ss_dssp TBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--H-----HHHE
T ss_pred CcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--H-----HHHH
Confidence 5544 77654 233 689999887542 1111112222345566665432 1 2469
Q ss_pred CHHHHHHHHHHHHHhhCCCCcc
Q 045902 1024 STEQRKRLTIAVELVANPSIIF 1045 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~ 1045 (1472)
||||+|| ||++|+.+|++..
T Consensus 295 Sgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 295 LGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHH--hhhhhcCCCCccC
Confidence 9999999 9999999999865
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-11 Score=152.70 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=66.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|+++|.+--.......+.++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 35789999999999999999999999999999999999887 899999886522222234567777766544457888
Q ss_pred HHHHHhhh
Q 045902 266 ETLDFSGR 273 (1472)
Q Consensus 266 E~l~f~~~ 273 (1472)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88876554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-09 Score=127.82 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=64.8
Q ss_pred CCCCChHHHHHH------HHHHHHhCC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 342 RRGISGGQKKRV------TTGEMLVGP-AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 342 ~~gLSGGqrkRv------sia~aL~~~-p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
...+|||||||+ ++|+++.++ |++++|||||+|||+.++..+.+.|+++. .+.+++++.|++ ++...+|
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCG--GGGGGCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChH--HHHhhCC
Confidence 456999999988 567899999 99999999999999999999999999864 245788888875 4678999
Q ss_pred eEEEec
Q 045902 415 DIILLS 420 (1472)
Q Consensus 415 ~iilL~ 420 (1472)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.7e-11 Score=137.09 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=82.5
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHH----
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW---- 989 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~---- 989 (1472)
+++.++||.|++|||||||.+.|++.... .| . . ++.+.+|+||+.+++. +.++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 57899999999999999999999987542 11 0 0 2345566999988754 78888877521
Q ss_pred c--C-CCch---HHHHHHHHHccccc---c-cccccCCCCCCCCCHHHHHHHHHH--HHHhhCCCCccccCCCCCCCHHH
Q 045902 990 L--R-LPKD---MFVEEVMELVEMKA---L-RNSLVGLPGVDGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDARA 1057 (1472)
Q Consensus 990 l--~-~~~~---~~~~~v~~~l~l~~---~-~~~~~~~~~~~~LSgGqrqRl~iA--~aL~~~p~il~LDEPTsgLD~~~ 1057 (1472)
+ + .+.. ....+.++.+.... . ....+.. ....+||||+||+.+| +++ +|+|||+||||+++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1 1 1221 23344455443220 0 0001111 1246999999999997 555 999999999999999853
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-11 Score=131.64 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=82.2
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCC-CeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR 991 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~ 991 (1472)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|......... ..+....... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~-~~~~~~~~~~-~~~~------------- 83 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLE-PRGLLPRKGA-PETF------------- 83 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHG-GGTCGGGTTS-GGGB-------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHH-HhcccccCCC-Cchh-------------
Confidence 579999999999999999999999997542 22357777776654322111 1111110000 0000
Q ss_pred CCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH-HHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh
Q 045902 992 LPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1070 (1472)
Q Consensus 992 ~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA-~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~ 1070 (1472)
......+.++.+...+-.+...... ..++|+||+||+++| ++++.++.++++|||.. ..+++..
T Consensus 84 --~~~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~- 148 (208)
T 3c8u_A 84 --DFEGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIW- 148 (208)
T ss_dssp --CHHHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTC-
T ss_pred --hHHHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhc-
Confidence 0011122222222111111111111 235899999999998 88999999999999841 1122222
Q ss_pred CCCEEEEEecCccHHHHHhhCe
Q 045902 1071 TGRTVVCTIHQPSIDIFEAFDE 1092 (1472)
Q Consensus 1071 ~g~tvi~t~H~~~~~~~~~~D~ 1092 (1472)
-.+|++.|..+..+.....|
T Consensus 149 --d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 149 --DVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp --SEEEEECCCHHHHHHHHHHH
T ss_pred --CEEEEEeCCHHHHHHHHHHH
Confidence 36777777655434445554
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-11 Score=144.10 Aligned_cols=137 Identities=19% Similarity=0.158 Sum_probs=88.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEc-----
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYIS----- 253 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~----- 253 (1472)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++....+ .+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4478888 4 4899999999999999999999999998876 7999999887742211 12234433
Q ss_pred ----CCCCC--CCC----CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHH
Q 045902 254 ----QHDLH--HGE----MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYV 323 (1472)
Q Consensus 254 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 323 (1472)
|++.. +++ .|+.+++.++..-...-. .+ ... +.. ..-..
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~------tl---------h~~-~~~---------------~~i~r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMS------TL---------HTN-TAV---------------GAVTR 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEE------EE---------CCS-SSH---------------HHHHH
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCccc------cc---------chh-hHH---------------HHHHH
Confidence 76654 344 577777766421000000 00 000 000 01113
Q ss_pred HHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeE
Q 045902 324 LKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367 (1472)
Q Consensus 324 l~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~ill 367 (1472)
|..+|++... .. ..|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~--~~-----~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--IS-----SSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--HH-----HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--HH-----HHHHHHHHHH--hhhhhcCCCCccC
Confidence 5567776532 22 3499999999 9999999999875
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.7e-10 Score=129.73 Aligned_cols=125 Identities=13% Similarity=0.077 Sum_probs=78.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCeeCCCCCCC---ceEEEEcCCCCCC-----CCCCH
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY---CGHELTEFVPQ---RTCAYISQHDLHH-----GEMTV 264 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV 264 (1472)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+..... +.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 88876 899999 89877653211 2479999998553 68899
Q ss_pred HHHH--HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc-cccccccCcc
Q 045902 265 RETL--DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI-CADIMVGNEM 341 (1472)
Q Consensus 265 ~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg~~~ 341 (1472)
|++ .|.. .. +. . |+- . +-.+. .+....++.+++.+||++ ..+....
T Consensus 238 -e~l~~~f~~-~~------~~-~--c~~-~--~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~~~--- 286 (302)
T 2yv5_A 238 -REVRNYFRE-FL------RY-Q--CKY-P--DCTHT--------------NEPGCAVKEAVKNGEISCERYKSYLK--- 286 (302)
T ss_dssp -GGGGGGCGG-GH------HH-H--HHS-T--TCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHHHH---
T ss_pred -HHHHHHHHH-HH------Hc-c--CCC-C--CCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHHHH---
Confidence 888 3421 00 00 0 000 0 00000 001123456788888875 5565554
Q ss_pred CCCCChHHHHHHHHHH
Q 045902 342 RRGISGGQKKRVTTGE 357 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~ 357 (1472)
.|||.++|++.|||
T Consensus 287 --~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 287 --IIKVYLEEIKELCR 300 (302)
T ss_dssp --HTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHhc
Confidence 49999999999986
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.4e-10 Score=117.76 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=39.7
Q ss_pred hCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch
Q 045902 360 VGPAKALFMDEIST-GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE 408 (1472)
Q Consensus 360 ~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~ 408 (1472)
+.+|++|+||||++ ++|......+.+.+..... .++++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34899999999985 9999999999999987654 578888888877654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-09 Score=130.24 Aligned_cols=63 Identities=8% Similarity=0.079 Sum_probs=46.8
Q ss_pred CCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEEecCc------------------chHH
Q 045902 361 GPAKALFMDEISTGLDSSTT------------FQIVRFMRQMVHITDVTMIISLLQPA------------------PETY 410 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t~------------~~i~~~L~~l~~~~~~tvii~~~q~~------------------~~~~ 410 (1472)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997543 56888899998888999998877611 2235
Q ss_pred hccCeEEEecCCe
Q 045902 411 DLFDDIILLSEGE 423 (1472)
Q Consensus 411 ~~fD~iilL~~G~ 423 (1472)
+.+|.++.|+.|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999887763
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.9e-09 Score=123.29 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=90.7
Q ss_pred eccc-eeEEeCCeEEEEEcCCCCChhHHHhhh--cCCCCC---CeeEEEEEEcCccC-ChhcccceeEEeccCCCCCCCC
Q 045902 906 LQDV-SGAFRPGVLTALVGVSGAGKTTLMDVL--AGRKTG---GYIEGSISISGYPK-KQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 906 L~~v-s~~i~~Ge~~al~G~nGaGKTTLl~~L--~g~~~~---~~~~G~i~i~G~~~-~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
|+.+ .+-|++|++++|+||||||||||++.| .+..+. +...+.+++++... .....
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl----------------- 229 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL----------------- 229 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-----------------
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-----------------
Confidence 4443 368999999999999999999999954 454431 11245777776542 11100
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCH-HHHHHHHHHHHHh--hCCCCccccCCCCCCCH
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg-GqrqRl~iA~aL~--~~p~il~LDEPTsgLD~ 1055 (1472)
......+.... +++++.+-+. +..+. .+.+.+..+.+++ .+|+++++||||+.+|+
T Consensus 230 -----~~~a~~~gl~~----~~vleni~~~------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 230 -----VSIAQRFGLDP----DDALNNVAYA------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp -----HHHHHHTTCCH----HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred -----HHHHHHcCCCh----HhHhhcEEEe------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00011111111 1222211110 01222 2334444444443 46999999999999996
Q ss_pred HHH------------HHHHHHHHHHhhC-CCEEEEEecCcc------------------HHHHHhhCeEEEEecC
Q 045902 1056 RAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1056 ~~~------------~~i~~~l~~l~~~-g~tvi~t~H~~~------------------~~~~~~~D~v~~l~~g 1099 (1472)
... ..+++.|++++++ |.|||+++|..+ ..+...+|.++.|.++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 433 5688888888765 999999999721 1234567888888763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-09 Score=127.29 Aligned_cols=162 Identities=14% Similarity=0.044 Sum_probs=84.5
Q ss_pred EEEEcCCCCChhHHHhhhcC-CCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchH
Q 045902 919 TALVGVSGAGKTTLMDVLAG-RKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDM 996 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g-~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~ 996 (1472)
+.|.||||+|||||+++|++ ...+ ..|.+.++|.+... ...++.+++++|.+.+..... + .......
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 107 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MGNNDRI 107 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC-------------CCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cCCcchH
Confidence 89999999999999999999 4432 36889988876432 122455788888764321111 0 0001111
Q ss_pred HHHHHHHHcc-cccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEE
Q 045902 997 FVEEVMELVE-MKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075 (1472)
Q Consensus 997 ~~~~v~~~l~-l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tv 1075 (1472)
.+.+.++.+. ...+.+.. .+|| +..+|+++++|||++ ||+.+...+.+.+.+.. .+.++
T Consensus 108 ~~~~~i~~~~~~~~~~~~~-------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~ 167 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVDFQD-------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRL 167 (354)
T ss_dssp HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEE
T ss_pred HHHHHHHHHHHhccccccc-------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEE
Confidence 2233333221 11111100 2465 788999999999999 99999999999998864 46899
Q ss_pred EEEecCccHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHHH
Q 045902 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFE 1120 (1472)
Q Consensus 1076 i~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~~~~~~~~~~f~ 1120 (1472)
|+++|+++.-.-..-+| ..++.+.|+.. +++.++..
T Consensus 168 Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp EEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHH
Confidence 99999976311112222 24556666643 34444444
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-11 Score=144.51 Aligned_cols=170 Identities=11% Similarity=0.075 Sum_probs=116.2
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCC----------CCCeeEEEEEEcCccCCh----hcccce---eEEeccCCCC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRK----------TGGYIEGSISISGYPKKQ----ETFARI---SGYCEQNDIH 974 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~----------~~~~~~G~i~i~G~~~~~----~~~~~~---~gyv~Q~~~~ 974 (1472)
.+++|..++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 112568999998843211 011122 2477788887
Q ss_pred CCCCCHHHHH--HHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC--CCccccCCC
Q 045902 975 SPNVTIYESL--LYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP--SIIFMDEPT 1050 (1472)
Q Consensus 975 ~~~lTv~e~l--~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p--~il~LDEPT 1050 (1472)
....+..|.+ .|.+.++... .++..++..+ ...+..+|++. +| +++++|||+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d-----~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ildeel 151 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD-----AIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIVDEL 151 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS-----EEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH-----HHHHHHhccc-------cceeeeecccc------------Ccchhhhhchhhh
Confidence 7777776655 4444433211 1111111111 11122355543 89 999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-hhCCCEEEEEecCccHHHHHhhCeEE-EEecCc-EEEEEcCCC
Q 045902 1051 SGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-HVIYAGPLG 1109 (1472)
Q Consensus 1051 sgLD~~~~~~i~~~l~~l-~~~g~tvi~t~H~~~~~~~~~~D~v~-~l~~gg-~v~~~g~~~ 1109 (1472)
.++|+......++.++++ .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+..
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 999999999999999998 77788864 99865 5778899998 7865 6 677767664
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=5e-10 Score=130.26 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=78.6
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEE---cCccCChh--ccc-ceeEEeccCCCCC-----CCCCHH
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PNVTIY 981 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~G~~~~~~--~~~-~~~gyv~Q~~~~~-----~~lTv~ 981 (1472)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3568999999999999999999999 765 45899999 88765432 122 2579999998654 67899
Q ss_pred HHH--HHH------HHcCC-----CchHHHHHHHHHccccc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 045902 982 ESL--LYS------AWLRL-----PKDMFVEEVMELVEMKA-LRNSLVGLPGVDGLSTEQRKRLTIAVE 1036 (1472)
Q Consensus 982 e~l--~~~------~~l~~-----~~~~~~~~v~~~l~l~~-~~~~~~~~~~~~~LSgGqrqRl~iA~a 1036 (1472)
|++ .|. +..+. .....++++++.+++.+ ..+... ..|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 443 11221 11246888999999875 455443 3699999999999874
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.4e-12 Score=137.70 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=43.2
Q ss_pred HHH-HHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 045902 1033 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1033 iA~-aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~ 1097 (1472)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..+. +...|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 456 788899999999999999999999999988887543 2334521 4689887764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-11 Score=140.45 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=90.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCC-CCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHD-LHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 261 (1472)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++..... .+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998753 789999877643221 13355555542 33444
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+++.|++.+.+..++ ....+ .+....++ .
T Consensus 106 i~~~Deid~~~~~r~--------------~~~~~--------------------------------~~~~~~~~-----~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DRETG--------------------------------ASVRVVNQ-----L 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHH-----H
T ss_pred eEeeehhhhhhcccC--------------CCcch--------------------------------HHHHHHHH-----H
Confidence 455454433211000 00000 00011121 2
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEIST------------GLDSSTTFQIVRFM 387 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEpts------------gLDs~t~~~i~~~L 387 (1472)
...|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 2349999999999999999999975 98864 23555666665543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-10 Score=128.15 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=27.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999998865
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.8e-09 Score=108.23 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=34.1
Q ss_pred hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE-EEEEEecCcch
Q 045902 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT-MIISLLQPAPE 408 (1472)
Q Consensus 360 ~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t-vii~~~q~~~~ 408 (1472)
+.+|++|++|||++ +|......+.+.+..+... +++ +|++.+.+..+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQQ 128 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHHH
Confidence 35689999999998 6665588888988887654 555 66666655433
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-10 Score=136.39 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=94.7
Q ss_pred cceeeccceeEEeCC-------eEEEEEcCCCCChhHHHhhhcCCCCC--CeeEEEEEEcCccCCh---hcccceeEEec
Q 045902 902 RLQLLQDVSGAFRPG-------VLTALVGVSGAGKTTLMDVLAGRKTG--GYIEGSISISGYPKKQ---ETFARISGYCE 969 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~G-------e~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~G~~~~~---~~~~~~~gyv~ 969 (1472)
+..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++++.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 346889999999877 88999999999999999999996421 1345655555443211 11234689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCC--------CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 045902 970 QNDIHSPNVTIYESLLYSAWLRL--------PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP 1041 (1472)
Q Consensus 970 Q~~~~~~~lTv~e~l~~~~~l~~--------~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p 1041 (1472)
|.+.+.+ ++.|++........ +....+++.++.+++.. +++. ...||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9877765 78888854322211 11122333344445544 3332 236999999998655
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhhC
Q 045902 1042 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071 (1472)
Q Consensus 1042 ~il~LDEPTsgLD~~~~~~i~~~l~~l~~~ 1071 (1472)
.+||+.+...+.+.|++.++.
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHH
Confidence 788888899999999988643
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.69 E-value=8e-09 Score=122.68 Aligned_cols=136 Identities=20% Similarity=0.193 Sum_probs=69.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC-CCCCCCCceeEEEEcCeeCCCCC-CCceEEEEcCCCCCCCCCCHHHHHHHhhhccCCCc
Q 045902 202 TLLLGPPGSGKTTLLQALSG-KSDKSLRVSGRVTYCGHELTEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 279 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G-~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 279 (1472)
++|.||||+|||||+++|+| ...++ .|.+.++|.+..... .+..+++++|.+.+.-... + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 56665 799999987654321 1345778887653311100 0 00000
Q ss_pred hhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHHHHH
Q 045902 280 RFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359 (1472)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL 359 (1472)
+ ..+ ...++.+......+..+ .+|| +
T Consensus 106 ~-------------------~~~------------------~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------IVI------------------QELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------HHH------------------HHHHHHHTTTTC---------------------------
T ss_pred h-------------------HHH------------------HHHHHHHHHhccccccc------cccc-----------c
Confidence 0 000 01111111000001000 2566 7
Q ss_pred hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc
Q 045902 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407 (1472)
Q Consensus 360 ~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 407 (1472)
.++|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 78999999999999 99999999999998753 35677887777653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-11 Score=145.94 Aligned_cols=168 Identities=13% Similarity=0.145 Sum_probs=111.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCC------------CCCCCCceeEEEEcCeeCCC----CCCCceE---EEEcCC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGK------------SDKSLRVSGRVTYCGHELTE----FVPQRTC---AYISQH 255 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~------------~~~~~~~~G~I~~~G~~~~~----~~~~~~~---~yv~Q~ 255 (1472)
.+++|..++|+|+||||||||+|+|+|. .+|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999993 2333 7999998844321 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccc
Q 045902 256 DLHHGEMTVRETL--DFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICA 333 (1472)
Q Consensus 256 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 333 (1472)
+-+...++..|++ .|-+.++.. +.++..+...
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777766665544 221111100 0001111111
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEecCcchHH
Q 045902 334 DIMVGNEMRRGISGGQKKRVTTGEMLVGPA--KALFMDEISTGLDSSTTFQIVRFMRQM-VHITDVTMIISLLQPAPETY 410 (1472)
Q Consensus 334 dt~vg~~~~~gLSGGqrkRvsia~aL~~~p--~illLDEptsgLDs~t~~~i~~~L~~l-~~~~~~tvii~~~q~~~~~~ 410 (1472)
++..+..+||+. +| +++++|||+.++|.......++.++.. .+ .+.|++ .|-..++.
T Consensus 127 ----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---sh~~~~~~ 186 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---MKAKKEEQ 186 (392)
T ss_dssp ----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---HHHHHHHH
T ss_pred ----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccHHHHH
Confidence 012223366653 88 999999999999999999999988887 43 455543 34456778
Q ss_pred hccCeEE-EecCC-eEEEecChh
Q 045902 411 DLFDDII-LLSEG-EIVYQGPRE 431 (1472)
Q Consensus 411 ~~fD~ii-lL~~G-~iv~~G~~~ 431 (1472)
+++|++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 8999999 99999 888777643
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-11 Score=140.95 Aligned_cols=129 Identities=18% Similarity=0.154 Sum_probs=86.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh---cccceeEEeccCC-CCCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE---TFARISGYCEQND-IHSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~---~~~~~~gyv~Q~~-~~~~~ 977 (1472)
+..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.+.... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 99999999999999999999754 26899999765321 2234466777753 34455
Q ss_pred CCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 978 VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
+++.|++...+..+.. ...+ ......+... ..|||||+||+.|++++..+|++| |||+.
T Consensus 106 i~~~Deid~~~~~r~~--~~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--RETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTCC-----------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhhcccCC--Ccch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 5655555432111110 0000 0112223322 359999999999999999999985 98864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.3e-08 Score=109.09 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=47.1
Q ss_pred HHHHHHHh--hCCCCccccCCCCCC--CHHHHHHHHHHHHHHh-hCCCEEEEEecCccHH-------HHHhhCeEEEEec
Q 045902 1031 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1098 (1472)
Q Consensus 1031 l~iA~aL~--~~p~il~LDEPTsgL--D~~~~~~i~~~l~~l~-~~g~tvi~t~H~~~~~-------~~~~~D~v~~l~~ 1098 (1472)
...++.++ .+|+++++|||++.+ |+.....++..+.+++ +.|.|||+++|..... +.+.+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 6544455555555554 5699999999986531 3567899999974
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-10 Score=136.96 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=96.5
Q ss_pred ceeeeceeeEEeCC-------eEEEEEcCCCCcHHHHHHHHhCCCCCCC-CceeEEEEcCeeCCCC---CCCceEEEEcC
Q 045902 186 LEILHDVSGIVKPS-------RMTLLLGPPGSGKTTLLQALSGKSDKSL-RVSGRVTYCGHELTEF---VPQRTCAYISQ 254 (1472)
Q Consensus 186 ~~iL~~vs~~i~~G-------e~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~~---~~~~~~~yv~Q 254 (1472)
..++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35788888888776 8899999999999999999999863221 1356665555443221 12356899999
Q ss_pred CCCCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc
Q 045902 255 HDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD 334 (1472)
Q Consensus 255 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 334 (1472)
.+.+.+ ++.|++.......... .. .... +. ...++..+..++|.. ++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~----i~--~~~~-------~~-----------------~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQID----IM--IGKG-------PS-----------------AKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhcccc----ee--eccC-------cc-----------------cccccccCCCeEEEE-ec
Confidence 877665 7888874432111000 00 0000 00 000112233344433 45
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 045902 335 IMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITD 395 (1472)
Q Consensus 335 t~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~ 395 (1472)
+.++ .||+|+|+|+.++ .+||+.+..++.+.|++.++..+
T Consensus 158 ~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 158 TRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp SCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred CCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 5554 4999999998554 78999999999999998876544
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.3e-10 Score=131.22 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=86.6
Q ss_pred eeeccceeEE-------------------eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEE---cCccCChhcc
Q 045902 904 QLLQDVSGAF-------------------RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI---SGYPKKQETF 961 (1472)
Q Consensus 904 ~iL~~vs~~i-------------------~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~G~~~~~~~~ 961 (1472)
++++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ ||...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 4788888877 89999999999999999999999996541123789999 98875432 2
Q ss_pred cceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 045902 962 ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANP 1041 (1472)
Q Consensus 962 ~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p 1041 (1472)
++.+|++ |...+++.+|+.+++.+...++.... .+. ....+ .+.+ +|+..+.+.+.+|
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------~i~-~P~~~----------~~~~--~~~~~~~~~~~~~ 185 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------NVT-APVYS----------HLIY--DVIPDGDKTVVQP 185 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------CEE-ECCEE----------TTTT--EECTTCCEEEC-C
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------cee-ccccc----------cccc--CcccccceecCCC
Confidence 3457888 77777788999999987655442211 000 00011 1111 2222222345678
Q ss_pred CCccccCCCCCCCH
Q 045902 1042 SIIFMDEPTSGLDA 1055 (1472)
Q Consensus 1042 ~il~LDEPTsgLD~ 1055 (1472)
+++++|.|....|.
T Consensus 186 ~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 186 DILILEGLNVLQSG 199 (308)
T ss_dssp CEEEEECTTTTCCG
T ss_pred CEEEECchhhCCCc
Confidence 99999999998874
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-11 Score=134.80 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=43.1
Q ss_pred HHH-HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 355 TGE-MLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 355 ia~-aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.... .| . . ..+|.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~-----a~--~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMES-----SK--E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTG-----GG--S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----hh--c--c-CCceEEEECCC
Confidence 445 678889999999999999999999999999887653211 12 1 1 57899988764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-09 Score=122.10 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=65.3
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEE---cCccCCh-hcccce-eEEeccCCCCCC----CCCHH
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI---SGYPKKQ-ETFARI-SGYCEQNDIHSP----NVTIY 981 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~G~~~~~-~~~~~~-~gyv~Q~~~~~~----~lTv~ 981 (1472)
+.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|..... ....+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677899999999999999999999999765 45899998 7765432 122222 799999987765 6899
Q ss_pred HHHH--HHH---H---cC--C-----CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHH
Q 045902 982 ESLL--YSA---W---LR--L-----PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029 (1472)
Q Consensus 982 e~l~--~~~---~---l~--~-----~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrq 1029 (1472)
|++. |.. . ++ . .....++++++.+++.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 321 1 11 1 12246788899988876443322 146777776
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.63 E-value=9.4e-09 Score=126.48 Aligned_cols=173 Identities=13% Similarity=0.168 Sum_probs=106.4
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE-EEEEcCccCChhccc-ce----eEEeccCCCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG-SISISGYPKKQETFA-RI----SGYCEQNDIHSP 976 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~i~G~~~~~~~~~-~~----~gyv~Q~~~~~~ 976 (1472)
...|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+.+......... |. .++-.+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHTCCHH------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcCCCHH------
Confidence 3468889889999999999999999999999999874321 012 344433332221111 11 111111
Q ss_pred CCCHHHHHHHHHHcCCCch--HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCccccCCCCC
Q 045902 977 NVTIYESLLYSAWLRLPKD--MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1052 (1472)
Q Consensus 977 ~lTv~e~l~~~~~l~~~~~--~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~--~~p~il~LDEPTsg 1052 (1472)
.+. .. +...+ ..+.+.++.++..++. +..+ .++|.+|.+ ..++.++ .+|+++++|+++..
T Consensus 262 ------~l~-~g--~l~~~~~~~~~~a~~~l~~~~l~---i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 262 ------NLR-TG--KLTPEDWGKLTMAMGSLSNAGIY---IDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp ------HHH-TS--CCCHHHHHHHHHHHHHHHSSCEE---EECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred ------HHh-cC--CCCHHHHHHHHHHHHHHhcCCEE---EECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 010 00 11111 1233344444333221 1111 368999987 5677776 68999999999997
Q ss_pred CCH--------HHHHHHHHHHHHHhhC-CCEEEEEec---------C--ccH-------HHHHhhCeEEEEecC
Q 045902 1053 LDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRG 1099 (1472)
Q Consensus 1053 LD~--------~~~~~i~~~l~~l~~~-g~tvi~t~H---------~--~~~-------~~~~~~D~v~~l~~g 1099 (1472)
.+. .....+.+.|+.++++ |.+||+++| + |.. .+.+.+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 742 3346788888888755 999999999 2 431 356679999999864
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.62 E-value=9.2e-11 Score=131.04 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=55.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhc-CCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA-GRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~-g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
.+..+++|+++++|++++|+||||||||||+++|+ |..++ ..+.+.+...+..... ....+|.+++...+..+++.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~--~~~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN--IVKSVSVTTRAARKGE-KEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C--EEECCCEESSCCCTTC-CBTTTBEECCHHHHHHHHHT
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC--cccccccCCCCCCccc-cCCCeEEEecHHHhhhhhhc
Confidence 35789999999999999999999999999999999 97542 1222222221111110 11223555543322222222
Q ss_pred HHHHHH----HHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH-HHH-HHHhhCCCCccccCCCCCCCH
Q 045902 982 ESLLYS----AWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL-TIA-VELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 982 e~l~~~----~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl-~iA-~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
+++... ..........++++++.-.. -+.+. + ..+ ...-++++ .-+ ..++..|+...+||++.+.|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-vild~----~-~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~ 163 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRKNLEDNVDKGVS-TLLVI----D-WQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA 163 (231)
T ss_dssp TCEEEEEEETTEEEEEECTTHHHHHHHTCE-EEEEC----C-HHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC------
T ss_pred CceehhhhhccccCCCCHHHHHHHHHcCCe-EEEEc----C-HHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCC
Confidence 221100 00000011224444433111 11110 0 000 11123333 111 233567889999999999998
Q ss_pred HHHHHHHHHHHHH
Q 045902 1056 RAAAIVMRTVRNT 1068 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l 1068 (1472)
.+...+.+.|++.
T Consensus 164 ~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 164 DDSEVVEARLKGA 176 (231)
T ss_dssp --------CHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8887777666654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-09 Score=122.56 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=51.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCeeCCCCCC---CceEEEEcCCCC-----------
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY---CGHELTEFVP---QRTCAYISQHDL----------- 257 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 257 (1472)
.+.+|++++|+||||||||||||+|+|...++ +|+|.+ +|++++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45579999999999999999999999999887 899999 8988765322 135799999974
Q ss_pred -----CCCCCCHHHHHHHh
Q 045902 258 -----HHGEMTVRETLDFS 271 (1472)
Q Consensus 258 -----~~~~lTV~E~l~f~ 271 (1472)
++|++|+ ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5788888 888775
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.1e-09 Score=119.59 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=64.1
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEE---cCccCChh--cc-cceeEEeccCCC------------
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISI---SGYPKKQE--TF-ARISGYCEQNDI------------ 973 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i---~G~~~~~~--~~-~~~~gyv~Q~~~------------ 973 (1472)
.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|.+.... .. .+.+||++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 445799999999999999999999999876 35899999 88765321 11 134799999874
Q ss_pred ----CCCCCCHHHHHHHHHHcC-CCchHHHHHHHHHcccc-cccccc
Q 045902 974 ----HSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMK-ALRNSL 1014 (1472)
Q Consensus 974 ----~~~~lTv~e~l~~~~~l~-~~~~~~~~~v~~~l~l~-~~~~~~ 1014 (1472)
++|++|+ ||+.|..... ......++++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4788999 9988753221 12235688889988884 444443
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-08 Score=117.50 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=44.3
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE---cCeeCCCCCCC-ce-EEEEcCCCCCCC----CCCH
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY---CGHELTEFVPQ-RT-CAYISQHDLHHG----EMTV 264 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~~~~-~~-~~yv~Q~d~~~~----~lTV 264 (1472)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+..... +. .+|+.|++-+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999998876 899998 88776543211 12 699999987665 6899
Q ss_pred HHHHH
Q 045902 265 RETLD 269 (1472)
Q Consensus 265 ~E~l~ 269 (1472)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.5e-08 Score=112.82 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=79.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHh
Q 045902 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFS 271 (1472)
Q Consensus 192 vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 271 (1472)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45557899999999999999999999999988664 577877654421 00 001111
Q ss_pred hhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHH
Q 045902 272 GRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKK 351 (1472)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrk 351 (1472)
....+.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11223445432 1236899999
Q ss_pred HH---HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 045902 352 RV---TTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 352 Rv---sia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
++ ++++++..+|+++++|||.. ......+++.|+++.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 4555667776766544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-08 Score=114.85 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=74.1
Q ss_pred ceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHH
Q 045902 909 VSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSA 988 (1472)
Q Consensus 909 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~ 988 (1472)
+++..++|++++|+||||+||||++..|++.... ..|.|.+.+.+.... + ..|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~------~-------------a~eqL---- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA------A-------------AIEQL---- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH------H-------------HHHHH----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH------H-------------HHHHH----
Confidence 4556789999999999999999999999996542 235666655442110 0 11111
Q ss_pred HcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH---HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHH
Q 045902 989 WLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065 (1472)
Q Consensus 989 ~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl---~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l 1065 (1472)
+...+.+++.. ....|+|+.+++ +|++++..+|+++++|||.. ......+++.+
T Consensus 152 ----------~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL 208 (306)
T 1vma_A 152 ----------KIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEEL 208 (306)
T ss_dssp ----------HHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHH
T ss_pred ----------HHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHH
Confidence 12233334321 124689999999 89999999999999999974 23344455555
Q ss_pred HHH
Q 045902 1066 RNT 1068 (1472)
Q Consensus 1066 ~~l 1068 (1472)
+++
T Consensus 209 ~~l 211 (306)
T 1vma_A 209 RKV 211 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=108.82 Aligned_cols=118 Identities=22% Similarity=0.133 Sum_probs=80.9
Q ss_pred ccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHH
Q 045902 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLY 986 (1472)
Q Consensus 907 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 986 (1472)
+++++. +|++++++|+||+||||++..|++.... ..|+|.+.+.+...... . +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~------~-------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAA------R-------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHH------H-------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhH------H-------------HHH--
Confidence 678888 9999999999999999999999996542 24677777655321100 0 111
Q ss_pred HHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC-CCCCCHHHHHHHHHHH
Q 045902 987 SAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAAAIVMRTV 1065 (1472)
Q Consensus 987 ~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP-TsgLD~~~~~~i~~~l 1065 (1472)
..+.+..++..+.. + ..-+-.+.+|.+|+.+...+++++++||| ++|+|......+.+..
T Consensus 146 ------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~ 206 (295)
T 1ls1_A 146 ------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLK 206 (295)
T ss_dssp ------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred ------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHh
Confidence 01122233322211 0 11344566788999988899999999999 9999998888887777
Q ss_pred HHH
Q 045902 1066 RNT 1068 (1472)
Q Consensus 1066 ~~l 1068 (1472)
+.+
T Consensus 207 ~~~ 209 (295)
T 1ls1_A 207 EVL 209 (295)
T ss_dssp HHH
T ss_pred hhc
Confidence 665
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.2e-07 Score=100.93 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=46.0
Q ss_pred CCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch-------HHhccCeEEEecC
Q 045902 361 GPAKALFMDEISTGL--DSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE-------TYDLFDDIILLSE 421 (1472)
Q Consensus 361 ~~p~illLDEptsgL--Ds~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~-------~~~~fD~iilL~~ 421 (1472)
.+|+++++|+|++.+ |.....+++..|.++++..+.|++++.|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 665667777777777777788988877655431 4567899999864
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-07 Score=109.86 Aligned_cols=147 Identities=22% Similarity=0.288 Sum_probs=83.3
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCCC-CCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHH
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-GGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAW 989 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~ 989 (1472)
+-+++|+++.|.||||+|||||+..++.... .+ | .+.|+.-+....+ . +...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~----------------~vlyi~~E~~~~~-------~-~a~~ 108 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---G----------------IAAFIDAEHALDP-------E-YAKK 108 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---C----------------CEEEEESSCCCCH-------H-HHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---C----------------eEEEEECCCCcCH-------H-HHHH
Confidence 4799999999999999999999888875321 11 1 1233333221100 0 1111
Q ss_pred cCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhC--CCCccccCCCCCC----------CH--
Q 045902 990 LRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVAN--PSIIFMDEPTSGL----------DA-- 1055 (1472)
Q Consensus 990 l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~--p~il~LDEPTsgL----------D~-- 1055 (1472)
+..+. .+-.+-.+ .+.. +-+.++++++.+ |+++++|||++.+ |+
T Consensus 109 lG~~~----------------~~l~i~~~----~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 109 LGVDT----------------DSLLVSQP----DTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp TTCCG----------------GGCEEECC----SSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred cCCCH----------------HHeEEecC----CCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 11110 00011111 2333 345678888755 9999999999998 33
Q ss_pred -HHHHHHHHHHHHH----hhCCCEEEEEecCccH---------------HHHHhhCeEEEEecCcEEEEEcC
Q 045902 1056 -RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI---------------DIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1056 -~~~~~i~~~l~~l----~~~g~tvi~t~H~~~~---------------~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
..++.+.+.++++ .+.|+|||++.|..+. .+...+|.++.+.+ ++++..|+
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 2223444555554 3459999999996431 13456788888875 34443343
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-07 Score=113.20 Aligned_cols=184 Identities=13% Similarity=0.129 Sum_probs=109.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
....|+++.+-+++|++++|.|+||+|||||+..|++...+. .| ..+.|++- +++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~------E~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSL------EMSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEES------SSCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEEC------CCCH
Confidence 456799999899999999999999999999999999754321 12 12445543 3444
Q ss_pred HHHHHHh-hhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 265 RETLDFS-GRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 265 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
.+...-. +...+... + .+ ..+...+.+...+.+ .++.++..+. .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~--~---~l-----~~g~l~~~~~~~~~~---------------a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA--Q---NL-----RTGKLTPEDWGKLTM---------------AMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH--H---HH-----HTSCCCHHHHHHHHH---------------HHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH--H---HH-----hcCCCCHHHHHHHHH---------------HHHHHhcCCE---EEEC--CC
Confidence 3332110 00001100 0 00 001111111111111 2222322211 1111 23
Q ss_pred CCChHHHHHHHHHHHHh--CCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEEEe---------c
Q 045902 344 GISGGQKKRVTTGEMLV--GPAKALFMDEISTGLDS--------STTFQIVRFMRQMVHITDVTMIISLL---------Q 404 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~--~~p~illLDEptsgLDs--------~t~~~i~~~L~~l~~~~~~tvii~~~---------q 404 (1472)
++|++|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++..+.++|++.| .
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 58999987 5666666 68999999999998743 23366788899999888888888765 1
Q ss_pred --Cc-------chHHhccCeEEEecCCeE
Q 045902 405 --PA-------PETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 405 --~~-------~~~~~~fD~iilL~~G~i 424 (1472)
|. ..+...+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 32 146678999999987654
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-08 Score=121.11 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=49.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEF 243 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~ 243 (1472)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++...
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGS 70 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcccC
Confidence 3579999999999 999999999999999999999999887 89999999877543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.7e-09 Score=120.17 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=58.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCceeEEEE---cCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHh
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSD--KSLRVSGRVTY---CGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFS 271 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 271 (1472)
++|++++|+||||||||||+++|+|.+. ++ +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999876 65 899999 88764221 12346788 777778889999999876
Q ss_pred hhc
Q 045902 272 GRC 274 (1472)
Q Consensus 272 ~~~ 274 (1472)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-08 Score=128.28 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=98.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCC---------
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHD--------- 256 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d--------- 256 (1472)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... ..++|+++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45789999999999999999999999999999999998775 2388999887766543 3588888742
Q ss_pred -------------CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHH
Q 045902 257 -------------LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYV 323 (1472)
Q Consensus 257 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 323 (1472)
..+..+++.+|+... .+.. .+.+.+ ...... .
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~--------------------~~~~~v-----------~~~~~~---~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGR--------------------TKAPFI-----------DATGAH---A 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTC--------------------SSCCEE-----------ECTTCC---H
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccC--------------------CCCCEE-----------EcCCCC---H
Confidence 011111111111000 0000 000000 000000 1
Q ss_pred HHHhCCcccccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 045902 324 LKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ 389 (1472)
Q Consensus 324 l~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 389 (1472)
-+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 12222211111 1224699999999999999999999999999998 888877777776653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-07 Score=105.94 Aligned_cols=139 Identities=15% Similarity=0.125 Sum_probs=82.4
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP 993 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~ 993 (1472)
++|++++|+||||+||||++..|++.... ..| +.+.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 47899999999999999999999986531 123 13456666542 3455565543221
Q ss_pred chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHh---h
Q 045902 994 KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV---D 1070 (1472)
Q Consensus 994 ~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~---~ 1070 (1472)
..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-+. .
T Consensus 159 ----------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~ 213 (296)
T 2px0_A 159 ----------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESS 213 (296)
T ss_dssp ----------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTT
T ss_pred ----------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCC
Confidence 1121100 01222 33344555 45999999999 99999876655554444332 1
Q ss_pred CCCEEEE-EecCccHHHHHhhCeEEEEecCcEE
Q 045902 1071 TGRTVVC-TIHQPSIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1071 ~g~tvi~-t~H~~~~~~~~~~D~v~~l~~gg~v 1102 (1472)
.+.++|+ ++|... ++.+.+|++-.+..+|.+
T Consensus 214 ~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 214 IQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp EEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEE
T ss_pred CeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEE
Confidence 2334444 478753 566667766655554433
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.6e-09 Score=130.87 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=100.1
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCC-------
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDI------- 973 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~------- 973 (1472)
+...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 3456899999999999999999999999999999999976532 24888888876542 2345788876431
Q ss_pred ---------------CCCCCCHHHHHHHHHHcCCCch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHH
Q 045902 974 ---------------HSPNVTIYESLLYSAWLRLPKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAV 1035 (1472)
Q Consensus 974 ---------------~~~~lTv~e~l~~~~~l~~~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~ 1035 (1472)
.+..+++.+|+.....-..+.. .......++++........ ..++|+|++|++..++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ-----SGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGGGGEECCH
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh-----cCCccccccccccCce
Confidence 1111122111110000000000 0000112222322211111 1369999999999999
Q ss_pred HHhhCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 045902 1036 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067 (1472)
Q Consensus 1036 aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~ 1067 (1472)
...+++.+|||||... |++.....+.+.|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999998 899888888888874
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.8e-08 Score=105.40 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHH
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l 1068 (1472)
+...+|++|+.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999888653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-09 Score=125.85 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=81.0
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCC-CCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDI-HSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~-~~~~ 977 (1472)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ....+.+++++|... ..+.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 456899999999999 89999999999999999999654 5788888865321 112234566677643 4566
Q ss_pred CCHHHHHHHHHHcCCC----chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 045902 978 VTIYESLLYSAWLRLP----KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1043 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~----~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~i 1043 (1472)
+++.|++......+.. .....++.+.. .. ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~---------ll-----~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ---------LL-----VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHH---------HH-----HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHH---------HH-----HHHhCCCCCCCEEEEEecCCchh
Confidence 7777777432221110 01111111111 11 24899999999999999999987
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-08 Score=108.17 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=48.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---CCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---PQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ..+.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56678999999999999999999999999863 2455554443322 1345789999877666666665543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=7.2e-08 Score=117.73 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=46.6
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
..+|+|||++|++ +++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 3579999999999 99999999999999999999998763 4799999998753
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9.3e-07 Score=102.18 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=83.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhhhccC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 276 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 276 (1472)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999987643 35 13555555432 2355555543211
Q ss_pred CCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHHHHHHHH
Q 045902 277 VGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTG 356 (1472)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqrkRvsia 356 (1472)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122110 0 012 233355565
Q ss_pred HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH--hCCcEEEEEEecCcchHHhccCeEEEecCCeEEEe
Q 045902 357 EMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH--ITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427 (1472)
Q Consensus 357 ~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~--~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~ 427 (1472)
+ +.+++++++| |.|+|+.....+.+..+-+.. ..+.++|+...+...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 999998776554443332211 11223344223334566666676656666777653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-06 Score=101.04 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=79.7
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... . .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-------------hHH-HHHH
Confidence 678887 99999999999999999999999987654 6788887654311 0 000 0000
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
.+.+..|++.... + .+-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112233332110 0 0123345
Q ss_pred HHHHHHHHHHhCCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 045902 350 KKRVTTGEMLVGPAKALFMDEI-STGLDSSTTFQIVRFMRQM 390 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEp-tsgLDs~t~~~i~~~L~~l 390 (1472)
.+|.+++++...+++++++||| +.|+|.....++.+..+.+
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988889999999999 9999988877777776654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.9e-08 Score=107.11 Aligned_cols=64 Identities=23% Similarity=0.185 Sum_probs=41.9
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCC
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMV 67 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHH
Confidence 56788999999999999999999999999753 34555543221 112345688888754443333
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-08 Score=122.44 Aligned_cols=167 Identities=11% Similarity=0.066 Sum_probs=91.4
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcC--CCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC-CC-CCHHHH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS-PN-VTIYES 983 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g--~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~-~~-lTv~e~ 983 (1472)
.+++.+..+.-++|.|++||||||++++|.. .... ..|++.+.+.+.+...+.. | ..-+.+. +- ..+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 4677788899999999999999999999875 2221 1245555554433222211 0 0001110 00 112222
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH----------HHHHHHhhCCC-CccccCCCCC
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL----------TIAVELVANPS-IIFMDEPTSG 1052 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl----------~iA~aL~~~p~-il~LDEPTsg 1052 (1472)
...-.++.... +...+.++..|..++.+..... ...+|+||+|+. .+++++...|. ++++||++.-
T Consensus 233 ~~~L~~~~~Em-erR~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 233 ANALRWCVNEM-ERRYKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 21111111000 1223556666665554321000 013677877652 35566677898 6899999999
Q ss_pred CCHHHHHHHHHHHHHHhh----CCCEEEEEecCccH
Q 045902 1053 LDARAAAIVMRTVRNTVD----TGRTVVCTIHQPSI 1084 (1472)
Q Consensus 1053 LD~~~~~~i~~~l~~l~~----~g~tvi~t~H~~~~ 1084 (1472)
+|.. ...+.+.|.++++ .|.++|+++|+|+.
T Consensus 310 l~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 310 MMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred Hhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 8843 3445555555543 27799999999983
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=7.1e-07 Score=105.58 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=49.4
Q ss_pred HHHHHHHHhC--CCcEeEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhCCcEEEEEEecCcc------
Q 045902 352 RVTTGEMLVG--PAKALFMDEISTGL----------DS---STTFQIVRFMRQM---VHITDVTMIISLLQPAP------ 407 (1472)
Q Consensus 352 Rvsia~aL~~--~p~illLDEptsgL----------Ds---~t~~~i~~~L~~l---~~~~~~tvii~~~q~~~------ 407 (1472)
-+.++++++. +|+++++||+++.+ |+ ..+..+.+.++++ ++..+.++|++-|....
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 3557777765 49999999999998 33 2222344444444 46678888876653321
Q ss_pred ---------hHHhccCeEEEecCCeEEEecC
Q 045902 408 ---------ETYDLFDDIILLSEGEIVYQGP 429 (1472)
Q Consensus 408 ---------~~~~~fD~iilL~~G~iv~~G~ 429 (1472)
.+...+|.++.++.++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1446788888888777655443
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-09 Score=121.83 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=81.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCC-CCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDI-HSPN 977 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~-~~~~ 977 (1472)
+..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 346899999999999 89999999999999999998654 5788888865321 111233556666542 4566
Q ss_pred CCHHHHHHHHHHcCCC----chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC
Q 045902 978 VTIYESLLYSAWLRLP----KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1049 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~----~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP 1049 (1472)
+++.|++......+.. ......+.+..+ . ..|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l---------l-----~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL---------L-----VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHH---------H-----HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHH---------H-----HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777776432211110 011111111111 1 24789999999999999999987 4543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-07 Score=115.43 Aligned_cols=166 Identities=12% Similarity=0.100 Sum_probs=91.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhC--CCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCC--CHHH
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSG--KSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEM--TVRE 266 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G--~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 266 (1472)
.+++.+..+..++|.|++||||||+|++|.. ....+ .|+|.+.+.+.+..... .-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh--------hhccCCcccceeec
Confidence 3677788899999999999999999999875 22222 35666655554431110 00011111 1222
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccc--ccccCccCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICAD--IMVGNEMRRG 344 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d--t~vg~~~~~g 344 (1472)
+...+.+.. .....++.+| ..+++..|+.+..+ ..+. ..
T Consensus 228 d~~~a~~~L-----~~~~~EmerR------------------------------~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANAL-----RWCVNEMERR------------------------------YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHH-----HHHHHHHHHH------------------------------HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHH-----HHHHHHHHHH------------------------------HHHHHHcCCccHHHHHHHHH----HH
Confidence 222211100 0011122111 12455556554322 1111 23
Q ss_pred CChHHHHHH----------HHHHHHhCCCc-EeEEeCCCCCCCHHHHHHHHHHHHHH---HHhCCcEEEEEEecCcc
Q 045902 345 ISGGQKKRV----------TTGEMLVGPAK-ALFMDEISTGLDSSTTFQIVRFMRQM---VHITDVTMIISLLQPAP 407 (1472)
Q Consensus 345 LSGGqrkRv----------sia~aL~~~p~-illLDEptsgLDs~t~~~i~~~L~~l---~~~~~~tvii~~~q~~~ 407 (1472)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++ .+..|.++|++.+.|..
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 788988763 24556677887 89999999998843 34455555544 34447789988888873
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-09 Score=122.31 Aligned_cols=75 Identities=23% Similarity=0.407 Sum_probs=52.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCC-CCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHD-LHHGEM 262 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 262 (1472)
.+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++..... .+.+++++|+. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 99999999999999999999874 5889888866432211 12234444442 133444
Q ss_pred CHHHHH
Q 045902 263 TVRETL 268 (1472)
Q Consensus 263 TV~E~l 268 (1472)
++.|++
T Consensus 136 ~~iDei 141 (278)
T 1iy2_A 136 VFIDEI 141 (278)
T ss_dssp EEEETH
T ss_pred Eehhhh
Confidence 555555
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-07 Score=100.08 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHh
Q 045902 1031 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1069 (1472)
Q Consensus 1031 l~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~ 1069 (1472)
...|++|+.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 99999999999888887653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-09 Score=118.87 Aligned_cols=47 Identities=32% Similarity=0.618 Sum_probs=41.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 240 (1472)
.+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 5789999999999 99999999999999999999864 58888887654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.6e-06 Score=104.35 Aligned_cols=113 Identities=25% Similarity=0.324 Sum_probs=76.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
..++++++.+++| +.|.||+|+|||||.++|++..... -+.+++.+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~--------------------------- 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDF--------------------------- 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGT---------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHH---------------------------
Confidence 4567788888888 7899999999999999999843210 011111000
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCC----------CCCC
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP----------TSGL 1053 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEP----------TsgL 1053 (1472)
.+..+| .+++++|-.++.+....|.|||+||+ ++|.
T Consensus 86 ---------------------------~~~~~g-------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~ 131 (476)
T 2ce7_A 86 ---------------------------VELFVG-------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131 (476)
T ss_dssp ---------------------------TTCCTT-------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------
T ss_pred ---------------------------HHHHhc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC
Confidence 000011 26788888999999999999999999 4477
Q ss_pred CHHHHHHHHHHHHHHh----hCCCEEEEEecCcc
Q 045902 1054 DARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~----~~g~tvi~t~H~~~ 1083 (1472)
|......+.+++..+- ..+..||+++|+|+
T Consensus 132 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp -CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 7777777777777663 34778999999975
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-06 Score=98.14 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=23.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHh-CCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALS-GKSDK 225 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~-G~~~~ 225 (1472)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98753
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.4e-08 Score=116.61 Aligned_cols=140 Identities=11% Similarity=0.037 Sum_probs=80.3
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCC-CCCCCHH
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIH-SPNVTIY 981 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~-~~~lTv~ 981 (1472)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+...+.+. ..+...+|+++|...+ +.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999853 35555422221 1112235677776532 2333321
Q ss_pred HHHHHHHHcCCCch----HHHHHHHH---Hccccc-cc---ccccC----CCCCCCCCHHHHHHHHHHHHHhhCCCCcc-
Q 045902 982 ESLLYSAWLRLPKD----MFVEEVME---LVEMKA-LR---NSLVG----LPGVDGLSTEQRKRLTIAVELVANPSIIF- 1045 (1472)
Q Consensus 982 e~l~~~~~l~~~~~----~~~~~v~~---~l~l~~-~~---~~~~~----~~~~~~LSgGqrqRl~iA~aL~~~p~il~- 1045 (1472)
..+. ..++.... ..+...++ .+.+.. .. +.+.. ......+++|+++|+..+.+++.+|++++
T Consensus 229 ~~~~--r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 229 GGES--RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp TTTT--TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred HHHH--hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 1110 00000000 11122221 000110 00 10000 00123588999999999888899999876
Q ss_pred ccCCCC
Q 045902 1046 MDEPTS 1051 (1472)
Q Consensus 1046 LDEPTs 1051 (1472)
||+|+.
T Consensus 307 Ld~~~~ 312 (377)
T 1svm_A 307 LERSEF 312 (377)
T ss_dssp HHTCTH
T ss_pred EeCCHH
Confidence 999997
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-06 Score=92.86 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQ 389 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~ 389 (1472)
.+++.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999 999999999999988865
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-07 Score=103.98 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=39.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-----------CceEEEEcCC
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-----------QRTCAYISQH 255 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-----------~~~~~yv~Q~ 255 (1472)
++.+.+ ++++|+|||||||||||++|+|.+.++ +|+|.++|.++....+ ++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 899999999999999999999999887 8999999987732211 2457888873
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-06 Score=101.87 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=48.7
Q ss_pred eeccce--eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEE-EEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 905 LLQDVS--GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGS-ISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 905 iL~~vs--~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~-i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
-|+.+- +-+++|+++.|.||||+|||||+..+++.... ..|. +.+++.......+.+.+|+.+|+..+....++.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e 125 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence 344443 47999999999999999999999999875321 1233 466665433223344556666554444444554
Q ss_pred HHH
Q 045902 982 ESL 984 (1472)
Q Consensus 982 e~l 984 (1472)
+.+
T Consensus 126 ~~l 128 (356)
T 3hr8_A 126 QAL 128 (356)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.95 E-value=5.1e-06 Score=98.83 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=86.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-------CC-CceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHHHHHHhh
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDK-------SL-RVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 272 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~-------~~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 272 (1472)
.++|+|+||||||||++.|+|.... +. ..+|.|.++|.++. ...++|++.+.+...-+ ..+.++....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve-~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD-AFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-HHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-HHHHHHHHHH
Confidence 4899999999999999999997531 00 24689999886542 11234554442211100 0111211110
Q ss_pred hccCCCchhHHHHHhhHHHHhcCCCCChh--HHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHHH
Q 045902 273 RCLGVGTRFELLAELSRREKDAGIKPDPE--IDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQK 350 (1472)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGqr 350 (1472)
.....-.-. + . .++. .+... ..+..+++.+++.+..-..|+|. ..-+|+|++
T Consensus 257 ~aD~il~Vv-----------D--~-s~~~~~~~~~~-----------~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~ 310 (364)
T 2qtf_A 257 YSDALILVI-----------D--S-TFSENLLIETL-----------QSSFEILREIGVSGKPILVTLNK-IDKINGDLY 310 (364)
T ss_dssp GSSEEEEEE-----------E--T-TSCHHHHHHHH-----------HHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHH
T ss_pred hCCEEEEEE-----------E--C-CCCcchHHHHH-----------HHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHH
Confidence 000000000 0 0 0011 11100 01245677777765543444543 334788888
Q ss_pred HHHHHH----HHH-hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 045902 351 KRVTTG----EML-VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVH 392 (1472)
Q Consensus 351 kRvsia----~aL-~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~ 392 (1472)
+|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 311 ~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 311 KKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 988877 555 434444 89999999999999999887654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=94.62 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=28.6
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
|=+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999986543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.7e-05 Score=97.18 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEecC
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEI----------STGLDSSTTFQIVRFMRQMV---HITDVTMIISLLQP 405 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEp----------tsgLDs~t~~~i~~~L~~l~---~~~~~tvii~~~q~ 405 (1472)
|+++.|..++++....|.|||+||+ +.|.|......+.+.|..+- ...+..+|.+.+.|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 34677766666666666553 22355666666655
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.6e-07 Score=96.83 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=39.2
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh--cccceeEEeccCC
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE--TFARISGYCEQND 972 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~--~~~~~~gyv~Q~~ 972 (1472)
....++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 3556789999999999999999999999854 6788888765321 1122357777753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.6e-07 Score=101.25 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=39.0
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-----------hcccceeEEeccC
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-----------ETFARISGYCEQN 971 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-----------~~~~~~~gyv~Q~ 971 (1472)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999997763 47899999876521 1124557888874
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-06 Score=103.78 Aligned_cols=141 Identities=15% Similarity=0.152 Sum_probs=80.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCC---------CeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH---HHH
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTG---------GYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE---SLL 985 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~---------~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e---~l~ 985 (1472)
.++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+. ..+.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHHHHHHHHHH
Confidence 4999999999999999999996431 13578999988543 12233455544221 11111 111
Q ss_pred HHH--H--c-----CCCc---hH---HHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHH----HHH-hhCCCCcc
Q 045902 986 YSA--W--L-----RLPK---DM---FVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIA----VEL-VANPSIIF 1045 (1472)
Q Consensus 986 ~~~--~--l-----~~~~---~~---~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA----~aL-~~~p~il~ 1045 (1472)
... . + ..+. .. .+.++++.+++.+..--++.+. ...+|+++++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 000 0 0 0111 11 1234555555443321111211 235788888888887 444 333444
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhh
Q 045902 1046 MDEPTSGLDARAAAIVMRTVRNTVD 1070 (1472)
Q Consensus 1046 LDEPTsgLD~~~~~~i~~~l~~l~~ 1070 (1472)
+|||++|......+.+.|.++..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999888654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.8e-05 Score=92.56 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=89.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
...-|+.+.+-++||+++.|.|+||+|||||+.-++...... . ..+.|++- +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g----------------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---D----------------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---T----------------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---C----------------CeEEEEeC------CCCH
Confidence 455688888889999999999999999999998887643211 1 23455543 4554
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
.+... | +. ... .++ ..+.+. + | .
T Consensus 87 ~ql~~---R---------ll----s~~--~~v----------------------~~~~l~---------~---g-----~ 109 (338)
T 4a1f_A 87 EQLAL---R---------AL----SDL--TSI----------------------NMHDLE---------S---G-----R 109 (338)
T ss_dssp HHHHH---H---------HH----HHH--HCC----------------------CHHHHH---------H---T-----C
T ss_pred HHHHH---H---------HH----HHh--hCC----------------------CHHHHh---------c---C-----C
Confidence 44331 0 00 000 000 001110 0 2 3
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCcchHHhccCeEEEecC
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHIT-DVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~-~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
||++|.+|++.|...+.++++++.|+|... ..+|...++++.+.. +..+|+. |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI------------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI------------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE------------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE------------echHHhcC
Confidence 999999999999999999999999998643 346667777776655 5565554 66666654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.8e-07 Score=97.79 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=45.3
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC--CCceEEEEcCCCCCCCCCCHHHHHH
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV--PQRTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|++...+.+++.|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 3556789999999999999999999999864 77888887654211 0123466666544444445555543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.4e-05 Score=93.46 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=82.0
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
.-|+.+.+-++||+++.|.|++|+|||||+..++..... .| ..+.|+. ..++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fS------lEms~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFS------LEMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEE------SSSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEe------CCCCHHHH
Confidence 457777778999999999999999999999888753210 11 1233332 23444333
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHH
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~ 1063 (1472)
..- .......+++..+++ | .||.++.+|+..|...+.++++.+.|+|...+| .|..
T Consensus 90 ~~R-----------lls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~ 145 (338)
T 4a1f_A 90 ALR-----------ALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRL 145 (338)
T ss_dssp HHH-----------HHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHH
T ss_pred HHH-----------HHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHH
Confidence 210 000111122222222 2 599999999999999999999999999865432 5556
Q ss_pred HHHHHhhC--CCEEEEEec
Q 045902 1064 TVRNTVDT--GRTVVCTIH 1080 (1472)
Q Consensus 1064 ~l~~l~~~--g~tvi~t~H 1080 (1472)
.++++.++ |..+|++=|
T Consensus 146 ~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 146 QLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 66666543 567776643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.5e-05 Score=89.22 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcccc-CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEe--cCc
Q 045902 1021 DGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQP 1082 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~~~p~il~LD-EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~--H~~ 1082 (1472)
..+|++|+|++. +.+...++-++++| +|++|+|......+.+.+++... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 358999998876 55555667788999 99999999998888887777653 67777777 664
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.2e-05 Score=85.66 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=32.4
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS 226 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~ 226 (1472)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6788999999 99999999999999999999876553
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.4e-05 Score=86.39 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 045902 353 VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMV 391 (1472)
Q Consensus 353 vsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~ 391 (1472)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998886643
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=1e-05 Score=105.53 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCccccCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEE-ecCccHHHHHhhCeEEEE
Q 045902 1021 DGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~t-~H~~~~~~~~~~D~v~~l 1096 (1472)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||++. ++.+.+++..++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 3579999999999999999999999999996 999887777777666655455677775 88764 566677654333
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=2.9e-05 Score=84.51 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=72.8
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHH
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMF 997 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~ 997 (1472)
+++|+|+|||||||+.+.|++. |...+++-. ..+.+. .+....
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-------g~~~id~d~-----~~~~~~-------------------------~~~~~~ 46 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-------GVPLVDADV-----VAREVV-------------------------AKDSPL 46 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-------TCCEEEHHH-----HHHHTT-------------------------CSSCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-------CCcccchHH-----HHHHHc-------------------------cCChHH
Confidence 6899999999999999999983 222333211 111000 001122
Q ss_pred HHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEE
Q 045902 998 VEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1077 (1472)
Q Consensus 998 ~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~ 1077 (1472)
..++.+.+|...+ .+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.+++. .+.+||+
T Consensus 47 ~~~i~~~~g~~~~------------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~ 110 (206)
T 1jjv_A 47 LSKIVEHFGAQIL------------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLF 110 (206)
T ss_dssp HHHHHHHHCTTCC------------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEE
T ss_pred HHHHHHHhCHHHh------------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEE
Confidence 3445555543211 3578899999999988888765444 3456666666666555433 3568888
Q ss_pred EecCccHH-HHHhhCeEEEEe
Q 045902 1078 TIHQPSID-IFEAFDELFLMK 1097 (1472)
Q Consensus 1078 t~H~~~~~-~~~~~D~v~~l~ 1097 (1472)
.+|..... ....||.++++.
T Consensus 111 ~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 111 VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ECTTTTTTTCGGGCSEEEEEE
T ss_pred EechhhhcCcHhhCCEEEEEE
Confidence 88864321 245678888875
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.6e-05 Score=86.33 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=27.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS 226 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~ 226 (1472)
.+++|++++|+|||||||||++++|++.+.++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998553
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.4e-05 Score=102.45 Aligned_cols=133 Identities=15% Similarity=0.096 Sum_probs=75.0
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCHHHHHHH
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTIYESLLY 986 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 986 (1472)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ...++.+++..|...+... +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~------- 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-G------- 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-T-------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-C-------
Confidence 3467889999999999999999999999643221234666 45544321 1223334444443322110 0
Q ss_pred HHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHH
Q 045902 987 SAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066 (1472)
Q Consensus 987 ~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~ 1066 (1472)
-...+.|+ ||...++ .......-..+.-++++| |+.|+|+.+... ++
T Consensus 74 -------------------~~~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~----~~ 120 (665)
T 2dy1_A 74 -------------------HRVFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA----WT 120 (665)
T ss_dssp -------------------EEEEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH----HH
T ss_pred -------------------EEEEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH----HH
Confidence 00112222 2222222 112222335677888999 999999887743 23
Q ss_pred HHhhCCCEEEEEecCccH
Q 045902 1067 NTVDTGRTVVCTIHQPSI 1084 (1472)
Q Consensus 1067 ~l~~~g~tvi~t~H~~~~ 1084 (1472)
.+.+.|.++|+++|..+.
T Consensus 121 ~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 121 VAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHTTCCEEEEEECGGG
T ss_pred HHHHccCCEEEEecCCch
Confidence 333457888999998663
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.58 E-value=8.6e-06 Score=95.09 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=59.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC---------C---CceEEEE-cC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV---------P---QRTCAYI-SQ 254 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---------~---~~~~~yv-~Q 254 (1472)
+++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999988664 688998877653211 1 3457888 67
Q ss_pred CCCCCCCCCHHHHHHH
Q 045902 255 HDLHHGEMTVRETLDF 270 (1472)
Q Consensus 255 ~d~~~~~lTV~E~l~f 270 (1472)
.....|..++.+++..
T Consensus 171 ~~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 171 KLNADPASVVFDAIKK 186 (320)
T ss_dssp STTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6555555566666654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.55 E-value=2.4e-05 Score=84.90 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=26.5
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999763
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=84.13 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=31.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
..-|+++.+-+++|+++.|.|++|+|||||+..++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346788888899999999999999999999888874
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.9e-05 Score=83.17 Aligned_cols=40 Identities=25% Similarity=0.081 Sum_probs=24.8
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
....+++|||+.+++|+.++|+|+|||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999765
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=1.2e-06 Score=108.02 Aligned_cols=49 Identities=33% Similarity=0.617 Sum_probs=42.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~ 242 (1472)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 3688999999999 99999999999999999999864 5788888876644
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.47 E-value=1.1e-05 Score=90.92 Aligned_cols=63 Identities=21% Similarity=0.118 Sum_probs=45.4
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhc---CCCCCCeeEEEEE--------EcCccCCh----hcccceeEEec
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLA---GRKTGGYIEGSIS--------ISGYPKKQ----ETFARISGYCE 969 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~---g~~~~~~~~G~i~--------i~G~~~~~----~~~~~~~gyv~ 969 (1472)
++++.+ ++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ...++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 445544 789999999999999999999999 8755 4578888 78876532 23455678887
Q ss_pred cCC
Q 045902 970 QND 972 (1472)
Q Consensus 970 Q~~ 972 (1472)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.44 E-value=9e-06 Score=91.80 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=44.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHh---CCCCCCCCceeEEE--------EcCeeCCCCCC----CceEEEE
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALS---GKSDKSLRVSGRVT--------YCGHELTEFVP----QRTCAYI 252 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~---G~~~~~~~~~G~I~--------~~G~~~~~~~~----~~~~~yv 252 (1472)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++..... .+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887666 78888 88887643211 2456777
Q ss_pred cCC
Q 045902 253 SQH 255 (1472)
Q Consensus 253 ~Q~ 255 (1472)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=6.1e-06 Score=89.64 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=42.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEE--EEcCeeCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRV--TYCGHELT 241 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I--~~~G~~~~ 241 (1472)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445667777789999999999999999999999999875 2 5766 78776553
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.43 E-value=1.2e-06 Score=108.02 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=78.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChh---cccceeEEeccCCC-CCCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQE---TFARISGYCEQNDI-HSPNV 978 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~---~~~~~~gyv~Q~~~-~~~~l 978 (1472)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+..++|... ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 45789999999999 89999999999999999998653 46788888654221 11122344555432 33444
Q ss_pred CHHHHHHHHHHcCC-----CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCC
Q 045902 979 TIYESLLYSAWLRL-----PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1051 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~-----~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTs 1051 (1472)
++.|.+......+. ..+...+.+.+++ ..|||||+|+..|+++...+|++ |||+..
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL---------------~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL---------------VEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH---------------HHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHH---------------HHhcccccCccEEEEEecCChhh--cCcccc
Confidence 54444422111111 1111111111111 13778888888889999999987 898875
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.41 E-value=2.7e-05 Score=90.84 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=53.6
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hcc-----cceeEEe-ccC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-------ETF-----ARISGYC-EQN 971 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-------~~~-----~~~~gyv-~Q~ 971 (1472)
+++++++.+++|++++|+|+||+||||++..|++.... ..|+|.+.+.+... ..+ +..++++ .|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 34789999999999999999999999999999996542 25788887766532 112 3456788 665
Q ss_pred CCCCCCCCHHHHH
Q 045902 972 DIHSPNVTIYESL 984 (1472)
Q Consensus 972 ~~~~~~lTv~e~l 984 (1472)
....|..++.+++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4443433444444
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.40 E-value=1.4e-05 Score=89.89 Aligned_cols=38 Identities=34% Similarity=0.519 Sum_probs=35.6
Q ss_pred ceeeccceeEEeC---CeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 903 LQLLQDVSGAFRP---GVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 903 ~~iL~~vs~~i~~---Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+|+|+|++|++ |++++|+|++||||||+.++|++..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5699999999999 9999999999999999999999854
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.39 E-value=5.3e-05 Score=80.60 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=32.4
Q ss_pred eee--ccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 904 QLL--QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 904 ~iL--~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
..+ +++++.+.+| +++|+||||||||||+++|.+...
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 345 7889999999 999999999999999999987543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.35 E-value=6.8e-05 Score=81.24 Aligned_cols=38 Identities=29% Similarity=0.148 Sum_probs=24.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0001 Score=85.35 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=80.5
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCC-----CCCC--HHHHHH
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHS-----PNVT--IYESLL 985 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~-----~~lT--v~e~l~ 985 (1472)
+++| .++|+|++|+|||||++.|.|.... + ..+.+ ..+..+..|++.+++..+ |..- ....+
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l- 74 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAI- 74 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHH-
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeEEEEECcCCCccchhhH-
Confidence 3444 8999999999999999999996420 0 11122 112234557776654211 1111 00000
Q ss_pred HHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCccccCCCCCCCHHH-HHHHH
Q 045902 986 YSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVM 1062 (1472)
Q Consensus 986 ~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~--~~p~il~LDEPTsgLD~~~-~~~i~ 1062 (1472)
... ..+.+.+.+...++.-..+. ... +|.|++ .+++.+. ..|.++++ +.+|... ...+.
T Consensus 75 -~~~-------~~~~~~~~l~~~D~vl~Vvd--~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 75 -NRL-------MNKAASSSIGDVELVIFVVE--GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp -HHH-------HTCCTTSCCCCEEEEEEEEE--TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred -HHH-------HHHHHHHHHhcCCEEEEEEe--CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 000 00001111111111111111 112 888886 5566666 67888888 7899876 56677
Q ss_pred HHHHHHhhC-CC--EEEEEecCccHHHHHhhCeEE
Q 045902 1063 RTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 1094 (1472)
Q Consensus 1063 ~~l~~l~~~-g~--tvi~t~H~~~~~~~~~~D~v~ 1094 (1472)
+.++++.+. |. .+.+++|+-. .+.+.+|.+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888888654 43 5556666543 3444555443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=9.9e-06 Score=96.41 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEec
Q 045902 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1080 (1472)
Q Consensus 1023 LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g-~tvi~t~H 1080 (1472)
.+..++++..+++..+.+|+++++.-..+..|... ...++.++.+...| ++|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788899999999999999777664333445433 44566677765555 57777766
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=4.7e-05 Score=84.55 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=35.3
Q ss_pred ceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 909 VSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 909 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3445689999999999999999999999986 36788888763
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=9.2e-05 Score=96.53 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEIST-GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++..++...+.+++++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTS
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcC
Confidence 389999999999999999999999999996 9998877777766655432 3456777655566666677764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=7.9e-05 Score=79.38 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=30.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEc
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYC 236 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~ 236 (1472)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987532 25655543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00052 Score=81.79 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.3
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHHHhh---CCCEEEEEecCcc
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1083 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~---~g~tvi~t~H~~~ 1083 (1472)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45789999999876 88888888887766654 5789999999874
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00056 Score=80.68 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=78.2
Q ss_pred eeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcCC--CCC---CeeEEEEEEcCccCChhcccceeEEeccCCCCCCCC
Q 045902 905 LLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GYIEGSISISGYPKKQETFARISGYCEQNDIHSPNV 978 (1472)
Q Consensus 905 iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~--~~~---~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~l 978 (1472)
-|+.+- +-+++|+++.|.||+|+|||||+..++.. .+. +...+. .|+.-+..+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~v-----------------lyi~~E~~~---- 168 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKI-----------------IFIDTENTF---- 168 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEE-----------------EEEESSSCC----
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeE-----------------EEEECCCCC----
Confidence 345443 57999999999999999999999988863 210 001122 333322211
Q ss_pred CHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH-HHHHHHHHHHHh----hCCCCccccCCCCCC
Q 045902 979 TIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE-QRKRLTIAVELV----ANPSIIFMDEPTSGL 1053 (1472)
Q Consensus 979 Tv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG-qrqRl~iA~aL~----~~p~il~LDEPTsgL 1053 (1472)
....-......+..+ .+++++.+-.. + ..++. +.+.+..++.++ .+++++++|+.++-.
T Consensus 169 ~~~~l~~~~~~~g~~----~~~~l~~l~~~---~---------~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 169 RPDRLRDIADRFNVD----HDAVLDNVLYA---R---------AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp CHHHHHHHHHHTTCC----HHHHHHTEEEE---E---------CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred CHHHHHHHHHHcCCC----HHHHHhceeEe---e---------cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 121111112222222 12233322111 1 12333 335555666666 568999999999865
Q ss_pred CHH------------HHHHHHHHHHHHhhC-CCEEEEEecCc
Q 045902 1054 DAR------------AAAIVMRTVRNTVDT-GRTVVCTIHQP 1082 (1472)
Q Consensus 1054 D~~------------~~~~i~~~l~~l~~~-g~tvi~t~H~~ 1082 (1472)
+.. ....+++.|++++++ |.+||++.|-.
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 432 134556666666654 89999988853
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=5.1e-05 Score=84.31 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=34.8
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 240 (1472)
++..++|++++|.|++|||||||+++|+|. .|+|.+++.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 345579999999999999999999999997 37788887654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00058 Score=79.52 Aligned_cols=132 Identities=13% Similarity=0.102 Sum_probs=82.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCH
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 264 (1472)
..+-|+++.+-++||+++.|.|+||+|||||+.-++...-. .| ..+.|++- +++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g---------------~~vl~~sl------E~s~ 108 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND---------------DVVNLHSL------EMGK 108 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT---------------CEEEEEES------SSCH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---------------CeEEEEEC------CCCH
Confidence 44568888888999999999999999999998888753211 11 23556553 3455
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
.+...=.. .. ..++ ..+.+ .+ |. ..
T Consensus 109 ~~l~~R~~----------------~~--~~~i----------------------~~~~l---------~~---~~---~~ 133 (315)
T 3bh0_A 109 KENIKRLI----------------VT--AGSI----------------------NAQKI---------KA---AR---RD 133 (315)
T ss_dssp HHHHHHHH----------------HH--HTTC----------------------CHHHH---------HS---CH---HH
T ss_pred HHHHHHHH----------------HH--HcCC----------------------CHHHH---------hc---CC---CC
Confidence 44331000 00 0000 00000 00 00 12
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE--EEEE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVT--MIIS 401 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t--vii~ 401 (1472)
||++|++|+..|...+.++++++.|+|... ..++.+.++++.+..+.. +|+.
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVI 187 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMI 187 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 899999999999888888899999988632 455667777776655555 5443
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.19 E-value=3.2e-05 Score=86.94 Aligned_cols=38 Identities=37% Similarity=0.462 Sum_probs=35.7
Q ss_pred ceeeeceeeEEeC---CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 186 LEILHDVSGIVKP---SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 186 ~~iL~~vs~~i~~---Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|+|+.+++ |+.++|+|+|||||||+.++|++.+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999 9999999999999999999999865
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00073 Score=79.03 Aligned_cols=145 Identities=20% Similarity=0.194 Sum_probs=78.6
Q ss_pred eeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHHH
Q 045902 905 LLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYES 983 (1472)
Q Consensus 905 iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 983 (1472)
.|+.+- +-+++|+++.|.||+|+|||||+..++.........| |. ...+.|+.-+..+ ...+-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-------~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-------SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-------SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-------CCeEEEEECCCCC----CHHHH
Confidence 345443 6799999999999999999999998875311000000 00 0122333322211 11111
Q ss_pred HHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHH-HHHHHHHHHHHh---hCCCCccccCCCCCCCH----
Q 045902 984 LLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSGLDA---- 1055 (1472)
Q Consensus 984 l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG-qrqRl~iA~aL~---~~p~il~LDEPTsgLD~---- 1055 (1472)
......+..+ .+++++.+- +. +..+.. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 159 ~~~~~~~g~~----~~~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 159 ENMAKALGLD----IDNVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp HHHHHHTTCC----HHHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred HHHHHHhCCC----HHHHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1111122222 122222111 11 113333 346677788887 57899999999975532
Q ss_pred ----HH----HHHHHHHHHHHhhC-CCEEEEEecC
Q 045902 1056 ----RA----AAIVMRTVRNTVDT-GRTVVCTIHQ 1081 (1472)
Q Consensus 1056 ----~~----~~~i~~~l~~l~~~-g~tvi~t~H~ 1081 (1472)
.. ...+++.|++++++ |.+||++.|-
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 24455566666544 8999998874
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00012 Score=78.02 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=30.1
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG 953 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G 953 (1472)
.+|++++|+||||||||||++.|++..++ ...|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 36899999999999999999999996542 1345555443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.001 Score=76.45 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCCCCCHH----------HHHHHHHHHHHHhh----CCCEEEEEecCcc---HHH
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1086 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~t~H~~~---~~~ 1086 (1472)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467777888888888899999999998776532 22234444443321 2356788888753 334
Q ss_pred HHhhCeE
Q 045902 1087 FEAFDEL 1093 (1472)
Q Consensus 1087 ~~~~D~v 1093 (1472)
...||+.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 4455543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=7.1e-05 Score=81.14 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=40.5
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEE--EEcCccC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSI--SISGYPK 956 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i--~i~G~~~ 956 (1472)
....+.++...++|++++|+||||||||||.++|++... ..|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 345677778889999999999999999999999999753 13555 7777543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00019 Score=78.42 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=27.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.11 E-value=6.9e-05 Score=89.17 Aligned_cols=44 Identities=32% Similarity=0.348 Sum_probs=38.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEE
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY 235 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~ 235 (1472)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 466654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0023 Score=75.39 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=29.2
Q ss_pred eecee-eEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 189 LHDVS-GIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 189 L~~vs-~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55443 57999999999999999999999998874
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0011 Score=78.68 Aligned_cols=56 Identities=9% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMD-EISTGLDSSTTFQIVRFMRQMVHITDVTMIISL 402 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLD-EptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~ 402 (1472)
.+|+||+|++. +.+...++-++++| ++..|+|......+++.+++... +..+++..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999998876 55566788899999 99999999988888877776532 45555554
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0003 Score=76.42 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=27.7
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
-.+++|++++|+|+|||||||+.+.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999763
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0015 Score=77.47 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=27.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
..+|+++++.++ .++|+|++|||||||+++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999988 8999999999999999999994
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00016 Score=76.33 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=30.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
.+|++++|+|||||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999863 566776643
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0023 Score=73.42 Aligned_cols=27 Identities=44% Similarity=0.818 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++.-++|.||||+|||||.++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467788999999999999999999864
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00026 Score=77.27 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999765
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00012 Score=79.35 Aligned_cols=41 Identities=24% Similarity=0.126 Sum_probs=33.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999987554 5677665443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00044 Score=84.42 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=47.5
Q ss_pred hCCCCccccCCCCCCCH-HHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEE-EecCcEEEEEcCCC
Q 045902 1039 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~-~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~-l~~gg~v~~~g~~~ 1109 (1472)
.+|++||+||+..-.+. .+...+...+..+.+.|+.||+++|.+..++....+++.- + ..|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~-~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH-HSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc-cCCeEEEeCCCC
Confidence 38999999999887764 6777888999888888999999999864321111122211 2 235666666664
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0029 Score=73.97 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=29.5
Q ss_pred eeecee-eEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 188 ILHDVS-GIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 188 iL~~vs-~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 355543 67999999999999999999999988864
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00054 Score=74.44 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=27.2
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
-.+++|++++|+|++|||||||.+.|++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357889999999999999999999999865
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00011 Score=94.36 Aligned_cols=48 Identities=38% Similarity=0.369 Sum_probs=33.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCC
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~ 242 (1472)
|+.+++|+.++|+|++|+|||||++.|++..... ...|+| .+|..+.+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 3457789999999999999999999999754331 125766 55554433
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00027 Score=74.57 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=30.0
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999999753 556777654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.82 E-value=8.9e-05 Score=86.22 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=34.7
Q ss_pred ccceeeccceeEEeCCe------EEEEEcCCCCChhHHHhhhcCCCC
Q 045902 901 NRLQLLQDVSGAFRPGV------LTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge------~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
+..+.|++++..+..++ ++||+||||||||||+++|.+...
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567888888887776 999999999999999999998653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0047 Score=73.43 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=30.6
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEecC
Q 045902 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHI--TDVTMIISLLQP 405 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~--~~~tvii~~~q~ 405 (1472)
++|.++++||+... |......+.+.+.+.... .+.++|++.+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 56889999999876 887777777777654331 355666665554
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00054 Score=70.64 Aligned_cols=30 Identities=30% Similarity=0.712 Sum_probs=24.8
Q ss_pred ccceeEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 907 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
++.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566665 99999999999999999986
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00026 Score=88.37 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=36.1
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee-EEE-EcCee
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG-RVT-YCGHE 239 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~I~-~~G~~ 239 (1472)
..+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 357899999999999999999999999998775 54 674 77643
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00046 Score=74.48 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=26.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999865
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00014 Score=84.69 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=28.8
Q ss_pred eeeceeeEEeCCe------EEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 188 ILHDVSGIVKPSR------MTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 188 iL~~vs~~i~~Ge------~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.|++++..+..++ +++|+||||||||||+++|++.+.
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444444 899999999999999999999875
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00028 Score=86.20 Aligned_cols=69 Identities=9% Similarity=0.205 Sum_probs=44.9
Q ss_pred CCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE-ecCCeEEEecCh
Q 045902 361 GPAKALFMDEISTGLDS-STTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL-LSEGEIVYQGPR 430 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs-~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil-L~~G~iv~~G~~ 430 (1472)
.++++|++||+..-.+. .+...+...+..+.. .+..+|++.+.|..++..+.+++.- +..|.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 38899999999887765 667778888887754 5677888777765543323333332 345555555443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0037 Score=70.16 Aligned_cols=34 Identities=35% Similarity=0.806 Sum_probs=24.3
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++++++..++| ++|.||||+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555555 88999999999999999998653
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00073 Score=69.69 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=23.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 045902 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 192 vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~ 220 (1472)
.+..+.+| +++|+|||||||||+|++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34445555 99999999999999999987
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00051 Score=72.09 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.|++++|+|||||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0003 Score=76.27 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=31.7
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
..++|++++|+|+||||||||++.|++.... ..|.|.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 3578999999999999999999999986531 1355655443
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00098 Score=77.05 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=26.4
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.++++.-+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999754
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=80.39 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=91.7
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC--CCeeEEEEEEcCccCChhcc-cceeE---EeccCCCCCCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GGYIEGSISISGYPKKQETF-ARISG---YCEQNDIHSPN 977 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~~~~G~i~i~G~~~~~~~~-~~~~g---yv~Q~~~~~~~ 977 (1472)
.-|+.+.+-+++|+++.|.|++|+|||||...++.... .+ ...+.+... .+.... .|..+ -++.+......
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l~~g~ 264 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLE-MPAAQLTLRMMCSEARIDMNRVRLGQ 264 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESS-SCHHHHHHHHHHHHTTCCTTTCCGGG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhCCC
Confidence 45777777899999999999999999999988876321 11 012222221 111111 11100 01110000001
Q ss_pred CCHHHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCccccCCCCCCCH
Q 045902 978 VTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 978 lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~--~~p~il~LDEPTsgLD~ 1055 (1472)
++-.|. ..+.+.++.+...++ .+.. ..++|..+- .+.++.+. .+|+++++|..+.=.+.
T Consensus 265 l~~~~~------------~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 265 LTDRDF------------SRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp CCHHHH------------HHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred CCHHHH------------HHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 111110 112222332221111 1111 125777665 34556665 47999999998753322
Q ss_pred ----------HHHHHHHHHHHHHhhC-CCEEEEEecC-----------ccH-------HHHHhhCeEEEEec
Q 045902 1056 ----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PSI-------DIFEAFDELFLMKR 1098 (1472)
Q Consensus 1056 ----------~~~~~i~~~l~~l~~~-g~tvi~t~H~-----------~~~-------~~~~~~D~v~~l~~ 1098 (1472)
.....+.+.|+.++++ +.+||+++|- |.. .+.+.+|.++.|.+
T Consensus 326 ~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 326 GSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1234677888888765 8999999982 211 23456788888864
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00065 Score=73.27 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999998643
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0042 Score=71.75 Aligned_cols=29 Identities=41% Similarity=0.736 Sum_probs=26.0
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+++++-++|.||||+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35688899999999999999999999865
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0021 Score=77.64 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=33.1
Q ss_pred HHHHHHhhCCCCccccCCC-CC--CCHHHHHHHHHHHHHHhhCCCEEEEEecC
Q 045902 1032 TIAVELVANPSIIFMDEPT-SG--LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1081 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPT-sg--LD~~~~~~i~~~l~~l~~~g~tvi~t~H~ 1081 (1472)
+++.+...+++++++|+|. .+ .|+....++.++++.+......+|+.+|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 4555555689999999997 45 78877777777666554334445555553
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00047 Score=81.86 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999999753
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00029 Score=83.05 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCe
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 238 (1472)
.+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 5778888888999999999999999999999999976543 455655443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0033 Score=66.00 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00073 Score=79.84 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=32.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999976554 5777665544
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.001 Score=69.77 Aligned_cols=27 Identities=37% Similarity=0.334 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
.|++++|+||||||||||.++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998643
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0083 Score=70.81 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=28.4
Q ss_pred eeccce--eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 905 LLQDVS--GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 905 iL~~vs--~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 4689999999999999999999988875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00056 Score=85.32 Aligned_cols=42 Identities=36% Similarity=0.534 Sum_probs=34.1
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE-EEE-EcCcc
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG-SIS-ISGYP 955 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G-~i~-i~G~~ 955 (1472)
.+++|++++|+|+||||||||+++|+|...+ ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 5789999999999999999999999997653 244 574 77754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0035 Score=65.77 Aligned_cols=27 Identities=37% Similarity=0.697 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999853
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.04 Score=64.99 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=25.9
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+=+++|+++.|.|+||+|||||...++..
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999999888754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0079 Score=72.60 Aligned_cols=37 Identities=30% Similarity=0.281 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG 237 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G 237 (1472)
++.+++++|||||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999877543 45555533
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0023 Score=69.47 Aligned_cols=29 Identities=31% Similarity=0.735 Sum_probs=24.3
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999886
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.011 Score=72.15 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
.-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35677777799999999999999999999877775
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.012 Score=67.78 Aligned_cols=28 Identities=39% Similarity=0.570 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568899999999999999999987644
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.00089 Score=83.90 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=38.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCG 237 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G 237 (1472)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3567777777 89999999999999999999999988654 67776655
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0025 Score=70.55 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=27.4
Q ss_pred eeceeeEEe---CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 189 LHDVSGIVK---PSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 189 L~~vs~~i~---~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 677777776 9999999999999999999999987653
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0016 Score=77.24 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0007 Score=79.78 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=35.5
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
...+++++++.+.+|.+++|+|++|||||||++.|++..
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999854
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.012 Score=71.86 Aligned_cols=37 Identities=19% Similarity=0.458 Sum_probs=32.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457777778999999999999999999999888864
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0037 Score=66.64 Aligned_cols=35 Identities=34% Similarity=0.444 Sum_probs=20.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999988887 5689999999999999999973
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0043 Score=66.21 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=27.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC------CCCeeEEEEEEcC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGYIEGSISISG 953 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~------~~~~~~G~i~i~G 953 (1472)
.+++++++..++. .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 4789999998887 67999999999999999999732 1223455666655
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0056 Score=74.61 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC-------C--CCceeEEEEcCeeC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDK-------S--LRVSGRVTYCGHEL 240 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~-------~--~~~~G~I~~~G~~~ 240 (1472)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47899999999999999999997431 0 02368999999865
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0014 Score=72.69 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHhhCCCCccccCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhC
Q 045902 1024 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1091 (1472)
Q Consensus 1024 SgGqrqRl~iA~aL~~~p~il~LDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D 1091 (1472)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-++++++.--+.....+.|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 445555543 33578899999999976 6887766544444444333334666665544433444444
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0034 Score=68.13 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=22.9
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 045902 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 192 vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~ 220 (1472)
.++.+.| .+++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3444555 499999999999999999986
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0056 Score=69.70 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.++.-+.|.||+|+|||||.++|+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999998754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.025 Score=62.61 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=28.8
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHHHhh--CCCEEEEEec
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1080 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~--~g~tvi~t~H 1080 (1472)
.+|+++++..+.+.++......+...++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46799999999888888666555555443321 1258888888
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0021 Score=69.18 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=30.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888875 689999999999999999974
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0055 Score=74.68 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCC------C----CeeEEEEEEcCcc
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKT------G----GYIEGSISISGYP 955 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~------~----~~~~G~i~i~G~~ 955 (1472)
-.++|+|+||+|||||++.|+|... + .+..|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 3689999999999999999999642 1 1346889999864
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0032 Score=69.77 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.5
Q ss_pred eccceeEEe---CCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 906 LQDVSGAFR---PGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 906 L~~vs~~i~---~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
|.++++++. +|.+++|.|++||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566777766 999999999999999999999998654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.012 Score=66.98 Aligned_cols=28 Identities=43% Similarity=0.845 Sum_probs=24.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.++.-++|.||||+|||||.++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999865
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0014 Score=71.41 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=33.6
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee--EEEEcCee
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG--RVTYCGHE 239 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G--~I~~~G~~ 239 (1472)
.+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 35689999999999999999999999987643 46 66666543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0048 Score=67.89 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=41.9
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCcchHHhccCeEEEec
Q 045902 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL---------QPAPETYDLFDDIILLS 420 (1472)
Q Consensus 361 ~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~---------q~~~~~~~~fD~iilL~ 420 (1472)
.+++++++||.-. |+. ++++.++.+++ .+..+|++=+ .+++++..++|.|.-|.
T Consensus 88 ~~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999964 664 35556677666 4888888877 67788899999999975
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.02 Score=66.57 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=28.5
Q ss_pred eeccce-eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 905 LLQDVS-GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 905 iL~~vs-~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444 6799999999999999999999988774
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0017 Score=76.22 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=30.5
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
|+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999874
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0039 Score=67.14 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHhhhcCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.-+.|.||+|+|||||+++|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0086 Score=69.69 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.4
Q ss_pred hhCCCCccccCCCC-CCCHHHHHHHHHHHHHHhhCCCEEEEEecCc
Q 045902 1038 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082 (1472)
Q Consensus 1038 ~~~p~il~LDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~ 1082 (1472)
..+|++||+||+-. .-|..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999866 2344677788888888877777788877754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0027 Score=68.34 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=31.3
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999998888 4789999999999999999974
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0041 Score=66.19 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.2
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999875
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0041 Score=65.68 Aligned_cols=39 Identities=31% Similarity=0.253 Sum_probs=30.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCcee--EEEEcCee
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSG--RVTYCGHE 239 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G--~I~~~G~~ 239 (1472)
++|++++|.|++||||||+.+.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47999999999999999999999987643 24 45555543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.002 Score=76.07 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=30.5
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
+++.+++|+|++|||||||++.|+|...+ ..|.|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEeec
Confidence 46889999999999999999999985431 13556555543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0042 Score=67.28 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=26.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0054 Score=71.45 Aligned_cols=46 Identities=9% Similarity=0.160 Sum_probs=31.2
Q ss_pred CCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc
Q 045902 361 GPAKALFMDEISTG-LDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407 (1472)
Q Consensus 361 ~~p~illLDEptsg-LDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 407 (1472)
.++++|++||+-.- .|..+...+...+..+.. .+..+|++...+..
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 46899999998662 233677778888877655 45566666655544
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.015 Score=63.83 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=42.6
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CccHHHHHhhCeEEEEe
Q 045902 1040 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1040 ~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H---------~~~~~~~~~~D~v~~l~ 1097 (1472)
+|+++++||.-. |+.. +++.++.+++.|.+||++-| .++.++.+.+|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 6643 55566777777999999999 66778889999999875
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0023 Score=80.16 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=40.1
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
..+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 45678888888 899999999999999999999998654 34677777664
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0045 Score=67.87 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.+++|+|||||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0039 Score=65.95 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
.+++|+|++|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999998754321224777776554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0051 Score=64.99 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999854
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.006 Score=72.67 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=26.4
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 192 VSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 192 vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456778889999999999999999999986
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0015 Score=77.61 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=28.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 45678888876 9999999999999999988643
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0024 Score=70.86 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccC
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEIST-GLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFD 414 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEpts-gLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD 414 (1472)
.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... .-.++++|-.-|.+...++|+
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTT
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcC
Confidence 35544442 33578899999999966 6887766555555444322 234566666555555445554
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0014 Score=77.69 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.7
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 456788999877 999999999999999998853
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.014 Score=60.41 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0054 Score=66.39 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=25.2
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999998754
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0069 Score=65.46 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcch--HHhccCeEEEec
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPE--TYDLFDDIILLS 420 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~--~~~~fD~iilL~ 420 (1472)
+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .+.++|+..+- ..+ ....+|.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~-l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPL-LIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTT-TTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEech-hhhcCcHhhCCEEEEEE
Confidence 678899999999888887654333 2345555555554444322 24456655432 222 246788887773
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0054 Score=67.25 Aligned_cols=56 Identities=21% Similarity=0.083 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCCC-CeeEEEEEE--------cCccCCh----hcccceeEEeccC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKTG-GYIEGSISI--------SGYPKKQ----ETFARISGYCEQN 971 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i--------~G~~~~~----~~~~~~~gyv~Q~ 971 (1472)
+.+++|+|||||||||+.+.|++.... -...|++.. +|.+... ...++.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999975321 133566665 5654431 1233456777665
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.013 Score=60.65 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0065 Score=64.61 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=26.2
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0041 Score=66.17 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
++|.++.|.|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.031 Score=66.06 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999998643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0046 Score=74.52 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=37.8
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 190 HDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 190 ~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999988764 5778776544
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0024 Score=74.67 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=32.3
Q ss_pred eeeeceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhCCC
Q 045902 187 EILHDVSGIVKPSRM--TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~--~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++++++..+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367777788888888 9999999999999999999865
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.017 Score=60.96 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.085 Score=64.14 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
...-|+.+.+=+.||+++.|.|+||+|||||+.-++.
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3456777777799999999999999999999887775
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0051 Score=69.11 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=32.1
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 240 (1472)
..+++.+++|+|+|||||||+.+.|+..+.. |.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHH
Confidence 4567889999999999999999999987642 4566666443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=61.68 Aligned_cols=22 Identities=41% Similarity=0.768 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0084 Score=69.21 Aligned_cols=44 Identities=7% Similarity=0.073 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHHh--CCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q 045902 345 ISGGQKKRVTTGEMLV--GPAKALFMDEISTGLDSST-TFQIVRFMRQMVHITD 395 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~--~~p~illLDEptsgLDs~t-~~~i~~~L~~l~~~~~ 395 (1472)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++..+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 5566666 78999999 7899876 6667777877765433
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.07 Score=58.95 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5789999999999999999997543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0085 Score=64.58 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=62.54 Aligned_cols=26 Identities=35% Similarity=0.661 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+|..++|.|+|||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.019 Score=67.96 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998743
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.062 Score=59.95 Aligned_cols=27 Identities=48% Similarity=0.789 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++..-++|.||||+|||||.++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.18 Score=58.53 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=24.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+|..-++|.||||+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566788999999999999999999865
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0045 Score=67.36 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=31.5
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEE--EEEEcC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEG--SISISG 953 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G--~i~i~G 953 (1472)
.+++|.+++|+|++||||||+.+.|++...+ ..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECC
Confidence 3578999999999999999999999986531 235 566664
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0031 Score=73.66 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=33.6
Q ss_pred eeeccceeEEeCCeE--EEEEcCCCCChhHHHhhhcCCC
Q 045902 904 QLLQDVSGAFRPGVL--TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.+++++++.+++|+. ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999998 9999999999999999999853
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0076 Score=70.77 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=31.3
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.87 E-value=0.0035 Score=72.25 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=36.5
Q ss_pred ec-eeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCee
Q 045902 190 HD-VSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHE 239 (1472)
Q Consensus 190 ~~-vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 239 (1472)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 35 677766 9999999999999999999999987653 4667665443
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.081 Score=62.43 Aligned_cols=27 Identities=41% Similarity=0.800 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999999764
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.17 Score=62.56 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=30.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.+-|+.+.+-+.+|+++.|.|+||+|||||+.-++-
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 345677766799999999999999999999877764
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.012 Score=70.19 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=33.6
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC---------CCeeEEEEEEcCc
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---------GGYIEGSISISGY 954 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---------~~~~~G~i~i~G~ 954 (1472)
-+.++.|..++|+|+||+|||||+++|+|... ..+..|.+.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34667888999999999999999999999621 1244688877664
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.0095 Score=64.18 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.013 Score=61.93 Aligned_cols=38 Identities=34% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCCC-CCeeEEEEEEcCc
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRKT-GGYIEGSISISGY 954 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~G~ 954 (1472)
.+++|+|+||||||||++.|.+... .+..-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999998532 2233467776654
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.046 Score=64.67 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.7
Q ss_pred eeccce--eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 905 LLQDVS--GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 905 iL~~vs--~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344443 4789999999999999999999887764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.2 Score=59.19 Aligned_cols=28 Identities=39% Similarity=0.584 Sum_probs=25.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
+-+++|+++.|.||||+|||||...++-
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4689999999999999999999887764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.017 Score=60.69 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.0041 Score=73.03 Aligned_cols=40 Identities=33% Similarity=0.576 Sum_probs=34.8
Q ss_pred ceeeeceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 186 LEILHDVSGIVKPSRM--TLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~--~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3577788888889988 999999999999999999997644
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.011 Score=63.58 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.016 Score=60.31 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.11 Score=60.40 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=23.8
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..|..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566678999999999999999999754
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.14 Score=63.24 Aligned_cols=35 Identities=20% Similarity=0.099 Sum_probs=29.4
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34666666799999999999999999999877764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.015 Score=61.72 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=25.7
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..++|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999999854
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.017 Score=61.27 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++.++.|.|+|||||||+.+.|+-.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998643
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.044 Score=61.15 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=21.9
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++..-+.|.||+|+|||||.++|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455789999999999999999874
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.061 Score=74.54 Aligned_cols=148 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred ecccee--EEeCCeEEEEEcCCCCChhHHHhhhcC-CCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHHH
Q 045902 906 LQDVSG--AFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 906 L~~vs~--~i~~Ge~~al~G~nGaGKTTLl~~L~g-~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
|+.+.+ -+++|+++.|.||+|+|||||+..++. ....+ .--+.+++.........+..|+-.++-.+....++.+
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~lee 797 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHH
Q ss_pred HHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHh--hCCCCccccCCCCCCC------
Q 045902 983 SLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLD------ 1054 (1472)
Q Consensus 983 ~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~--~~p~il~LDEPTsgLD------ 1054 (1472)
.+ ..++.++ .+|+++++|+.+.=..
T Consensus 798 i~-----------------------------------------------~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~ 830 (1706)
T 3cmw_A 798 AL-----------------------------------------------EICDALARSGAVDVIVVDSVAALTPKAEIEG 830 (1706)
T ss_dssp HH-----------------------------------------------HHHHHHHHHTCCSEEEESCSTTCCCHHHHHS
T ss_pred HH-----------------------------------------------HHHHHHHHccCCCEEEEechhhhcccccccc
Q ss_pred ----------HHHHHHHHHHHHHHhhC-CCEEEEEec----------Cc-----cHHHHHhhCeEEEEecCcEE
Q 045902 1055 ----------ARAAAIVMRTVRNTVDT-GRTVVCTIH----------QP-----SIDIFEAFDELFLMKRGGHV 1102 (1472)
Q Consensus 1055 ----------~~~~~~i~~~l~~l~~~-g~tvi~t~H----------~~-----~~~~~~~~D~v~~l~~gg~v 1102 (1472)
......++..|+.++++ |.+||++.| +| +-.+.+.+|-++.+.+++..
T Consensus 831 ~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~~~ 904 (1706)
T 3cmw_A 831 EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 904 (1706)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEE
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEecccc
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.02 Score=60.52 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.009 Score=71.98 Aligned_cols=46 Identities=26% Similarity=0.105 Sum_probs=36.9
Q ss_pred ccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 907 QDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 907 ~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
+++++. +|++++++|+||+||||++..|++.... ..|.|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 577887 8999999999999999999999996542 146777766554
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.02 Score=60.47 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.024 Score=65.10 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.1
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
+-+.+| ++.|.||+|+|||||+-.++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 568899 99999999999999955443
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.0089 Score=67.08 Aligned_cols=45 Identities=29% Similarity=0.347 Sum_probs=34.1
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGY 954 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 954 (1472)
++++.+ ..+++.++.|+|++||||||+.+.|+..... +.+.++|-
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecH
Confidence 444544 5678899999999999999999999976531 34566663
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.022 Score=63.03 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.02 Score=60.48 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.08 E-value=0.0078 Score=69.28 Aligned_cols=46 Identities=28% Similarity=0.190 Sum_probs=34.5
Q ss_pred cc-ceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 907 QD-VSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 907 ~~-vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
++ +++..+ |++++++|++|+||||++..|++.... ..+.+.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 777766 999999999999999999999986431 13455554443
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.05 Score=64.25 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++..++|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.023 Score=59.96 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.0071 Score=70.97 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=34.6
Q ss_pred cceeeccceeEEeCCeE--EEEEcCCCCChhHHHhhhcCCC
Q 045902 902 RLQLLQDVSGAFRPGVL--TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~--~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34578888889999998 9999999999999999999864
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.12 Score=56.01 Aligned_cols=53 Identities=17% Similarity=0.351 Sum_probs=42.7
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCcchHHhccCeEEEec
Q 045902 362 PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLL---------QPAPETYDLFDDIILLS 420 (1472)
Q Consensus 362 ~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~---------q~~~~~~~~fD~iilL~ 420 (1472)
+.+++++||.-- +|.. +++.++.++. .+..||++=+ .+++++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999876 6643 3366777766 4889999988 89999999999999885
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.059 Score=66.34 Aligned_cols=28 Identities=50% Similarity=0.899 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.02 Score=61.65 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.15 Score=61.50 Aligned_cols=29 Identities=45% Similarity=0.815 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++|-.=+++.||||+|||+|.++||+...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 55667789999999999999999998653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.027 Score=58.44 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 045902 201 MTLLLGPPGSGKTTLLQAL 219 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L 219 (1472)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.027 Score=59.46 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999998654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.023 Score=62.90 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999999754
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.03 Score=60.27 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999997654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.03 Score=58.54 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.03 Score=59.99 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999999876
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.054 Score=58.02 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=41.4
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec---------CccHHHHHhhCeEEEEe
Q 045902 1040 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1097 (1472)
Q Consensus 1040 ~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H---------~~~~~~~~~~D~v~~l~ 1097 (1472)
+.+++++||.-- +|+. +++.++++++.|..||++-+ .++.++.+.+|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6643 35677887777999999999 55678889999988774
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.2 Score=60.22 Aligned_cols=29 Identities=45% Similarity=0.890 Sum_probs=24.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++|-+=+++.||||+|||+|.++||+.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45556689999999999999999998653
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.027 Score=59.35 Aligned_cols=25 Identities=48% Similarity=0.575 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+..++|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5677899999999999999999844
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.029 Score=58.79 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
|.++.|+|++||||||+.+.|+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1472 | ||||
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-16 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-21 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-22 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-17 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-16 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-16 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-24 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-21 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-18 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-17 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-16 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-04 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.002 | |
| d1e69a_ | 308 | c.37.1.12 (A:) Smc head domain {Thermotoga maritim | 0.003 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.003 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 0.003 | |
| g1xew.1 | 329 | c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi | 0.003 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.004 |
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 110 bits (276), Expect = 2e-27
Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 19/214 (8%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQET 960
+ ++ + G + L+G +GAGKTT + +AG R G I +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEM----KALRNSLVG 1016
+ P +T+YE+L+ A+ R K+ ++ + + K L G
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1076
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1077 CTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
+ A ++++ G ++ G
Sbjct: 194 LVEQ----NALGALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 77.6 bits (191), Expect = 3e-16
Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 42/252 (16%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD-KSLRVSGRVTYCGHELTEF 243
+ + + V ++ L+G G+GKTT L A++G + ++ ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 244 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
+ + A + + E+TV E L R+ GIK D E
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAY---------------NRKDKEGIKRDLE-- 120
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
L + G +SGG+++ + G L+
Sbjct: 121 -----------------WIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRP 158
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
K L MDE S GL ++ ++++ + T+++ Q A + +L G+
Sbjct: 159 KLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLV-EQNALGALKVAHYGYVLETGQ 216
Query: 424 IVYQGPREYVLD 435
IV +G +LD
Sbjct: 217 IVLEGKASELLD 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (272), Expect = 4e-27
Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 13/216 (6%)
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSIS 950
K+ + E + L++V+ + G +++G SG+GK+T+++++ + T G + +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 951 ISGYPKKQETFARIS--GYCEQNDIHSPNVTIYESLLYSAWLR----LPKDMFVEEVMEL 1004
+ + T R G+ Q P +T E++ + + + + +E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 1005 VEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
++M L + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 129 LKMAELEERFANHK-PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1065 VRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
++ + G+TVV H I++ + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.7 bits (225), Expect = 8e-21
Identities = 44/263 (16%), Positives = 91/263 (34%), Gaps = 57/263 (21%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+ + + L +V+ +K ++GP GSGK+T+L + + G V
Sbjct: 11 YKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNI 67
Query: 239 ELT-----EFVPQRTC--AYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRRE 291
+ E R ++ Q +T E ++ F+ +S E
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL-------PLIFKYRGAMSGEE 120
Query: 292 KDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKK 351
+ ++ M+ L+ +SGGQ++
Sbjct: 121 RRKRA---------LECLKMAELEERFANHKP-------------------NQLSGGQQQ 152
Query: 352 RVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYD 411
RV L + D+ + LDS T +I++ ++++ T+++ T+D
Sbjct: 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THD 205
Query: 412 L-----FDDIILLSEGEIVYQGP 429
+ + II L +GE+ +
Sbjct: 206 INVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (273), Expect = 6e-27
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 33/249 (13%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQET 960
+ L VS + G +T ++G +G+GK+TL++V+ G + G + + E
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 961 FARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMF-----------------VEEVME 1003
+ Q +T+ E+LL + +++E
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 1004 LVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
+++ L + G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 137 FLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 1064 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLGRQSHKLVEYFEAVP 1123
V G T + H+ + D L++M G +I G E + V
Sbjct: 192 HVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE-------EEIKNVL 242
Query: 1124 GVPKIRDGY 1132
PK+ + Y
Sbjct: 243 SDPKVVEIY 251
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.7 bits (235), Expect = 5e-22
Identities = 58/255 (22%), Positives = 93/255 (36%), Gaps = 35/255 (13%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
+ + L VS V +TL++GP GSGK+TL+ ++G GRV + ++T
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 245 P----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
P Q EMTV E L C G L + +++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------ 126
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
M A +L+ L L D G +SGGQ K V G L+
Sbjct: 127 -----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420
K + MDE G+ I + ++ +T +I + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLII-EHRLDIVLNYIDHLYVMF 224
Query: 421 EGEIVYQGPREYVLD 435
G+I+ +G E +
Sbjct: 225 NGQIIAEGRGEEEIK 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (266), Expect = 4e-26
Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQ-E 959
+ ++ + G L+G SG GKTT + ++AG T EG I
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRIYFGDRDVTYLP 74
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKD---MFVEEVMELVEMKALRNSLV 1015
R Q+ P++T+YE++ + ++ PKD V EL++++ L N
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP 134
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1074
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ T
Sbjct: 135 A-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 189
Query: 1075 VVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
+ H D EA D + +M R G ++ G
Sbjct: 190 TIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 100 bits (251), Expect = 4e-24
Identities = 48/252 (19%), Positives = 94/252 (37%), Gaps = 44/252 (17%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
++ ++ +K +LLGP G GKTT L+ ++G + + GR+ + ++T
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLP 74
Query: 245 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
P+ R + + Q MTV E + F + + E D +
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK----------FPKDEIDKRV------- 117
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
+ ++L ++ + +SGGQ++RV +V
Sbjct: 118 -----------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEP 155
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
L MDE + LD+ + ++++ VT I E + D I +++ G+
Sbjct: 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQ 214
Query: 424 IVYQGPREYVLD 435
++ G V
Sbjct: 215 LLQIGSPTEVYL 226
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 103 bits (259), Expect = 5e-25
Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 37/230 (16%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQE 959
++L+ VS R G + +++G SG+GK+T + + + + G I +I+ K
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 960 TFARIS-----------GYCEQNDIHSPNVTIYESLLYSA--WLRLPKDMFVEEVMELVE 1006
Q+ ++T+ E+++ + L L K E ++ +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 134
Query: 1007 MKALRNSLVGLPG------VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1060
VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 135 K-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 1061 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
V+R ++ + G+T+V H ++ A + + G + G
Sbjct: 188 VLRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 80.3 bits (198), Expect = 5e-17
Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 28/252 (11%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
E+L VS + + ++G GSGK+T L+ ++ S G + G +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVR 70
Query: 245 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRFELLAELSRREKDAGIKPDPEID 303
+ ++ + L L V F L + ++ E +
Sbjct: 71 DKDGQLKVAD----------KNQLRLLRTRLTMVFQHFNLWSHMTVLENVM--------E 112
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
A ++ +S L +G+D A + +SGGQ++RV+ L
Sbjct: 113 APIQVLGLSKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEP 168
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
L DE ++ LD +++R M+Q+ TM++ + + +I L +G+
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FARHVSSHVIFLHQGK 226
Query: 424 IVYQGPREYVLD 435
I +G E V
Sbjct: 227 IEEEGDPEQVFG 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 5e-25
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 24/241 (9%)
Query: 894 KSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSIS 950
K +Q L +VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 951 ISGYPKKQETFARIS-GYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMK 1008
++ + + T AR G Q+ + T++ ++ L PKD V EL+ +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL- 127
Query: 1009 ALRNSLVGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063
VGL LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 128 ------VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 1064 TVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP----LGRQSHKLVEY 1118
+++ G T++ H+ + + D + ++ G +I L +
Sbjct: 182 LLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDTVSEVFSHPKTPLAQK 239
Query: 1119 F 1119
F
Sbjct: 240 F 240
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 4e-22
Identities = 54/263 (20%), Positives = 95/263 (36%), Gaps = 49/263 (18%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
F R ++ L++VS V ++ ++G G+GK+TL++ ++ + G V G
Sbjct: 11 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQ 67
Query: 239 ELTEFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREK 292
ELT R I QH TV + + E
Sbjct: 68 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----------PKDEV 117
Query: 293 DAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKR 352
+ +L ++GL D N +SGGQK+R
Sbjct: 118 KRRV------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQR 148
Query: 353 VTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDL 412
V L K L DE ++ LD +TT I+ ++ + +T+++ + +
Sbjct: 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRI 207
Query: 413 FDDIILLSEGEIVYQGPREYVLD 435
D + ++S GE++ Q V
Sbjct: 208 CDCVAVISNGELIEQDTVSEVFS 230
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 103 bits (259), Expect = 7e-25
Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 19/205 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARIS 965
L++++ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 966 GYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPG--VDG 1022
+C Q P TI E++++ V+ ++ + G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 158
Query: 1023 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1082
LS QR R+++A + + + +D P LD V + + +T + +
Sbjct: 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 218
Query: 1083 SIDIFEAFDELFLMKRGGHVIYAGP 1107
D++ ++ + G + G
Sbjct: 219 E--HLRKADKILILHQ-GSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.7 bits (217), Expect = 3e-19
Identities = 54/364 (14%), Positives = 107/364 (29%), Gaps = 96/364 (26%)
Query: 105 LLESILKVVEEDNEKFLLRLRERTDRVGIEIPKIEVRFENLSIEGDAYVGTRALPTLLNT 164
++E++ EE + L ++++ + V F +L + G+
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN-------------- 49
Query: 165 SLNAIEGVLGFLRLFPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSD 224
+L +++ ++ M + G GSGKT+LL + G+ +
Sbjct: 50 ----------------------PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87
Query: 225 KSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELL 284
S G + + G F Q + T++E + F
Sbjct: 88 AS---EGIIKHSGR--VSFCSQFSWIM---------PGTIKENIIFGVSYDEY------- 126
Query: 285 AELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344
K ++ I + ++G E
Sbjct: 127 -RYKSVVKACQLQ--------------------------QDITKFAEQDNTVLG-EGGVT 158
Query: 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQ 404
+SGGQ+ R++ + A +D LD T Q+ + + T I+ +
Sbjct: 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK 217
Query: 405 PAPETYDLFDDIILLSEGEIVYQGPRE--------YVLDFFESVGFRCPERKGAADFLQE 456
E D I++L +G + G + F + + L E
Sbjct: 218 --MEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTE 275
Query: 457 VTSR 460
R
Sbjct: 276 TLRR 279
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 102 bits (255), Expect = 8e-25
Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 21/212 (9%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP---KKQETFA 962
L +SG R G + LVG +GAGK+TL+ +AG +G +GSI +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDG 1022
Y Q ++ L + + + +V + + +
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK-TRTELLNDVAGALALDDKLGRS-----TNQ 125
Query: 1023 LSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1075
LS + +R+ +A ++ ++ +DEP + LD + + + + G +
Sbjct: 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAI 185
Query: 1076 VCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
V + H + +L+K GG ++ +G
Sbjct: 186 VMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 76.1 bits (187), Expect = 9e-16
Identities = 49/258 (18%), Positives = 83/258 (32%), Gaps = 60/258 (23%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ- 246
L +SG V+ + L+GP G+GK+TLL ++G G + + G L +
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWSATK 69
Query: 247 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
AY+SQ V L K E+
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQH----------------------DKTRTELL- 106
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA- 363
+ V L LD +SGG+ +RV +++
Sbjct: 107 ----------------NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITP 145
Query: 364 ------KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417
+ L +DE LD + + + + + + +++S T
Sbjct: 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-CQQGLAIVMSSHDLN-HTLRHAHRAW 203
Query: 418 LLSEGEIVYQGPREYVLD 435
LL G+++ G RE VL
Sbjct: 204 LLKGGKMLASGRREEVLT 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (251), Expect = 1e-24
Identities = 35/184 (19%), Positives = 78/184 (42%), Gaps = 13/184 (7%)
Query: 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFAR 963
+L+ ++ G + G +G GKTTL+ ++ ++G I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 964 ISGYCEQNDIHSPNVTIYESLLYSAWLRLPK--DMFVEEVMELVEMKALRNSLVGLPGVD 1021
+ + I +++ + L A L K + + +E VE+ L+ +
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKK------LG 124
Query: 1022 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1080
LS +R+ +A L+ N I +D+P +D + V++++ + + G ++ +
Sbjct: 125 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184
Query: 1081 QPSI 1084
+ S
Sbjct: 185 ELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 75.7 bits (186), Expect = 6e-16
Identities = 31/221 (14%), Positives = 75/221 (33%), Gaps = 47/221 (21%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240
S +L ++ ++ + GP G GKTTLL+ +S G + Y G +
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 241 TEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
T+ + ++ + + +++V + L GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------- 110
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
L+ + + + +S G +RV L+
Sbjct: 111 -----------------------LESVEVLDLKKKL------GELSQGTIRRVQLASTLL 141
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIIS 401
A+ +D+ +D + ++++ + +++ + +I S
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 182
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 102 bits (255), Expect = 1e-24
Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 37/250 (14%)
Query: 871 LPFQPLSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKT 930
+ + + DHV++ +N +L+D++ + G A VG+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSF-----------QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 931 TLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCE--QNDIHSPNVTIYESLLYSA 988
TL++++ G I I G+ K + Q D + T+ E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG- 115
Query: 989 WLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE-----------QRKRLTIAVEL 1037
EEV+E +M + ++ LP G TE Q++RL+IA
Sbjct: 116 ----RPTATDEEVVEAAKMANAHDFIMNLP--QGYDTEVGERGVKLSGGQKQRLSIARIF 169
Query: 1038 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1097
+ NP I+ +DE TS LD + +I+ + + RT + H+ S D++ +++
Sbjct: 170 LNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIE 226
Query: 1098 RGGHVIYAGP 1107
GH++ G
Sbjct: 227 -NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.9 bits (231), Expect = 3e-21
Identities = 52/255 (20%), Positives = 91/255 (35%), Gaps = 43/255 (16%)
Query: 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242
+ IL D++ ++ +G G GK+TL+ + D + SG++ GH + +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 243 FVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
F+ I Q D TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANA--HD 135
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
I + G T +G E +SGGQK+R++ + +
Sbjct: 136 FIMNLPQ-----GYDTEVG--------------------ERGVKLSGGQKQRLSIARIFL 170
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420
L +DE ++ LD + I + + D T +I + T D I+++
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIE 226
Query: 421 EGEIVYQGPREYVLD 435
G IV G ++
Sbjct: 227 NGHIVETGTHRELIA 241
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (250), Expect = 4e-24
Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 9/209 (4%)
Query: 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIEGSISISGYPKKQE 959
+ ++L+ +S G + L+G +GAGKTT + +++ + + G + + ++
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPH 71
Query: 960 TFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLP 1018
++ Y + N+ E L + A E V E+ L +
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV 131
Query: 1019 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1078
S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++ +
Sbjct: 132 S--TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 189
Query: 1079 IHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
H ++ D + L+ G ++ G
Sbjct: 190 SHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 82.3 bits (203), Expect = 7e-18
Identities = 56/267 (20%), Positives = 96/267 (35%), Gaps = 55/267 (20%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
K EIL +S ++ + L+GP G+GKTT L+ +S S SG VT G + E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 70
Query: 245 PQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEI 302
+ + +Y+ + + M E L F EI
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS--------------------SSSEI 110
Query: 303 DAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGP 362
+ + + +I GL V S G +++ L+
Sbjct: 111 EEMV--------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVN 151
Query: 363 AKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422
+ +DE ++GLD ++ + ++Q +T+++S E L D I L+ G
Sbjct: 152 PRLAILDEPTSGLDVLNAREVRKILKQA-SQEGLTILVSSHNM-LEVEFLCDRIALIHNG 209
Query: 423 EIVYQGP---------REYVLDFFESV 440
IV G + + + FE V
Sbjct: 210 TIVETGTVEELKERYKAQNIEEVFEEV 236
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.8 bits (246), Expect = 2e-23
Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 27/223 (12%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ 958
+ L++++ G ALVG SG+GK+T+ ++ EG I + G+ ++
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLRE 81
Query: 959 ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLV 1015
+ QN + ++ E++ E M + +
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-----RTEEYSREQIEEAARMAYAMDFIN 136
Query: 1016 GLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1064
+ +GL T QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 137 KMD--NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 194
Query: 1065 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
+ + RT + H+ S E DE+ +++ G ++ G
Sbjct: 195 LDE-LQKNRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 83.7 bits (207), Expect = 4e-18
Identities = 47/255 (18%), Positives = 97/255 (38%), Gaps = 44/255 (17%)
Query: 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTE 242
R++ L +++ + + L+G GSGK+T+ ++ D G + GH+L E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 243 FVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
+ + A +SQ+ + T ++ + A
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYA--M 132
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
I+ GL T +G E +SGGQ++R+ L
Sbjct: 133 DFINKMDN-----GLDTIIG--------------------ENGVLLSGGQRQRIAIARAL 167
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419
+ + L +DE ++ LD+ + I + ++ + T ++ + T + D+I+++
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVV 223
Query: 420 SEGEIVYQGPREYVL 434
+G IV +G +L
Sbjct: 224 EDGIIVERGTHSELL 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.7 bits (230), Expect = 2e-21
Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 14/216 (6%)
Query: 899 EENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP--- 955
+ + +L +++ + + G + +VG SG+GK+TL ++ G + I G+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLAL 69
Query: 956 KKQETFARISGYCEQNDIHSPNVTIYESLLYSAWL----RLPKDMFVEEVMELVEMKALR 1011
R G Q D N +I +++ + ++ + + +
Sbjct: 70 ADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREG 128
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
+ + GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 129 YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICK 187
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
GRTV+ H+ S + D + +M+ G ++ G
Sbjct: 188 GRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 80.7 bits (199), Expect = 3e-17
Identities = 48/248 (19%), Positives = 91/248 (36%), Gaps = 39/248 (15%)
Query: 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQR 247
IL +++ +K + ++G GSGK+TL + + +G+V GH+L P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 248 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMK 307
+ + L + + ++ + + ++
Sbjct: 75 LRRQVGVVLQDN--------------VLLNRSIIDNISLANPGMSVEKVIYAAKLAG--- 117
Query: 308 ATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALF 367
+ + E G+SGGQ++R+ LV K L
Sbjct: 118 ---------------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 368 MDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQ 427
DE ++ LD + I+R M ++ T+II + T D II++ +G+IV Q
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQ 218
Query: 428 GPREYVLD 435
G + +L
Sbjct: 219 GKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.0 bits (231), Expect = 2e-21
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP---KKQETFA 962
LQ ++ RPG +TALVG +G+GK+T+ +L G + + G P +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 963 RISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDG 1022
R Q + ++ E++ Y L + +EE+ + + GLP
Sbjct: 88 RQVAAVGQ-EPQVFGRSLQENIAYG----LTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142
Query: 1023 ---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1072
LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + +
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202
Query: 1073 RTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
R+V+ S + E D + ++ GG + G
Sbjct: 203 RSVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (224), Expect = 2e-20
Identities = 49/260 (18%), Positives = 102/260 (39%), Gaps = 43/260 (16%)
Query: 179 FPSKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238
+P++ L +L ++ ++P +T L+GP GSGK+T+ L + G++ G
Sbjct: 21 YPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGK 76
Query: 239 ELTEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAG 295
L ++ + R A + Q + +++E + + G
Sbjct: 77 PLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------G 111
Query: 296 IKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTT 355
+ P ++ A SG I GL D V E +SGGQ++ V
Sbjct: 112 LTQKPTMEEITAAAVKSGAH--------SFISGLPQGYDTEVD-EAGSQLSGGQRQAVAL 162
Query: 356 GEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415
L+ L +D+ ++ LD+++ Q+ + + + ++++ + D
Sbjct: 163 ARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADH 220
Query: 416 IILLSEGEIVYQGPREYVLD 435
I+ L G I G + +++
Sbjct: 221 ILFLEGGAIREGGTHQQLME 240
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 90.0 bits (223), Expect = 1e-20
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 15/211 (7%)
Query: 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFA 962
+ + +D++ G VG SG GK+TL+ ++AG +T + + I A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPA 70
Query: 963 RIS-GYCEQNDIHSPNVTIYESLLYSAWLRLPK----DMFVEEVMELVEMKALRNSLVGL 1017
G Q+ P++++ E++ + L K + V +V E++++ L +
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK- 129
Query: 1018 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1076
LS QR+R+ I LVA PS+ +DEP S LDA + + GRT++
Sbjct: 130 ----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 185
Query: 1077 CTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
H D++ ++ G V G
Sbjct: 186 YVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 2e-17
Identities = 49/271 (18%), Positives = 95/271 (35%), Gaps = 52/271 (19%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV 244
++ + D++ + + +GP G GK+TLL+ ++G + SG + + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 245 PQRTC-AYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEID 303
P + Q + ++V E + F + G + + +
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA----------KKEVINQRV------- 111
Query: 304 AFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPA 363
+ V ++L L D +SGGQ++RV G LV
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 364 KALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423
+DE + LD++ Q+ + ++ TMI E L D I++L G
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 424 IVYQGPREYVLDFFESVGFRCPERKGAADFL 454
+ G + + P + A F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.2 bits (221), Expect = 4e-20
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 15/216 (6%)
Query: 900 ENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ- 958
++ Q+L+D+S +P + A G SG GK+T+ +L G I+I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNI 69
Query: 959 --ETFARISGYCEQ-----NDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR 1011
E + G+ Q N+T Y+ + M
Sbjct: 70 SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL 129
Query: 1012 NSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1071
N+ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + +
Sbjct: 130 NTEVGERGV-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMK 187
Query: 1072 GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
GRT + H+ S D+++ +++ G + +G
Sbjct: 188 GRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.0 bits (205), Expect = 5e-18
Identities = 48/251 (19%), Positives = 87/251 (34%), Gaps = 42/251 (16%)
Query: 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ 246
+IL D+S +P+ + GP G GK+T+ L + +G +T G + +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 247 RTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDA 304
+ I D T+RE L + + +L+ PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD----- 127
Query: 305 FMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAK 364
L T +G E ISGGQ++R+ + K
Sbjct: 128 --------QLNTEVG--------------------ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 365 ALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424
L +DE + LDS + + + + ++ T ++ + T D I + +G+I
Sbjct: 160 ILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQI 215
Query: 425 VYQGPREYVLD 435
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.3 bits (213), Expect = 3e-19
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 10/213 (4%)
Query: 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE--GSISISGYPK 956
++ L +V+ G ++G SGAGKTT M ++AG + G + + S
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 957 KQETFARISGYCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLV 1015
R G Q PN+T +E++ + + K+ + V E+ ++ + + L
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 1016 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1074
P LS Q++R+ +A LV +PS++ +DEP S LDAR V+ G T
Sbjct: 136 HFPR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 1075 VVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107
++ H P+ DIF D + ++ G ++ G
Sbjct: 194 LLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 77.8 bits (191), Expect = 3e-16
Identities = 52/257 (20%), Positives = 98/257 (38%), Gaps = 43/257 (16%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYCGH 238
KK K+ L +V+ ++ +LGP G+GKTT ++ ++G S L R+
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 239 ELTEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKP 298
+L R + Q + +T E + F + + R++
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------IRKR------ 120
Query: 299 DPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEM 358
+ V KIL + + R +SG Q++RV
Sbjct: 121 ---------------------VEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARA 154
Query: 359 LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418
LV L +DE + LD+ ++++ VT+++ PA + + + D + +
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213
Query: 419 LSEGEIVYQGPREYVLD 435
L +G++V G E + D
Sbjct: 214 LVKGKLVQVGKPEDLYD 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.6 bits (209), Expect = 1e-18
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 27/217 (12%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETFA 962
++++S + G L+G SG GKTT + ++AG + G I G ++ K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 963 RISG--YCEQNDIHSPNVTIYESLLYSAWLR-LPKDMFVEEVMELVEMKALRNSLVGLPG 1019
+ Q+ P++T+Y+++ + LR +P+ + V E+ E+ +GL
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL-------LGLTE 131
Query: 1020 -----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1073
LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 132 LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV 191
Query: 1074 TVVCTIHQPSIDIFEAF---DELFLMKRGGHVIYAGP 1107
T + H D EA D + +M R G + G
Sbjct: 192 TTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 78.8 bits (194), Expect = 1e-16
Identities = 54/255 (21%), Positives = 98/255 (38%), Gaps = 44/255 (17%)
Query: 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG---KSDKSLRVSGRVTYCGHELT 241
++ + ++S VK +LLGP G GKTT L+ ++G S + + ++ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 242 EFVPQRT-CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDP 300
P+ A + Q + MTV + + F + V P
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV--------------------PRQ 114
Query: 301 EIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLV 360
EID ++ V ++LGL + +SGGQ++RV G +V
Sbjct: 115 EIDQRVRE--------------VAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIV 155
Query: 361 GPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420
+ MDE + LD+ ++ ++++ VT I E + D I +++
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN 214
Query: 421 EGEIVYQGPREYVLD 435
G + G + V D
Sbjct: 215 RGVLQQVGSPDEVYD 229
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 80.9 bits (199), Expect = 2e-17
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 10/204 (4%)
Query: 906 LQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISG-YPKKQETFARI 964
L ++S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 965 SGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLS 1024
+ QN P++ + ++L + +R+ K + V++ + + L P LS
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEF--GMRMKKIKDPKRVLDTARDLKIEHLLDRNP--LTLS 129
Query: 1025 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1083
+++R+ +A LV NP I+ +DEP S LD R + TV+ H +
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 1084 IDIFEAFDELFLMKRGGHVIYAGP 1107
+ D + ++ G +I G
Sbjct: 190 -EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.9 bits (186), Expect = 1e-15
Identities = 53/256 (20%), Positives = 100/256 (39%), Gaps = 47/256 (18%)
Query: 181 SKKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240
S+K K L ++S V+ ++LGP G+GKT L+ ++G SGR+ G ++
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 241 TEFVPQR-TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPD 299
T+ P++ A++ Q+ M V++ L+F R + +R D
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT----- 111
Query: 300 PEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEML 359
+ L ++ D +SGG+++RV L
Sbjct: 112 ------------------------ARDLKIEHLLD-----RNPLTLSGGEQQRVALARAL 142
Query: 360 VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILL 419
V K L +DE + LD T + + +T++ E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVV 201
Query: 420 SEGEIVYQGPREYVLD 435
+G+++ G E + +
Sbjct: 202 MDGKLIQVGKPEEIFE 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.1 bits (179), Expect = 1e-14
Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 24/229 (10%)
Query: 915 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGYIE-GSISISGYPKKQETFARISGYCEQN 971
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 972 DIHSPNVTIYESLLYSAWLRLPKDMF--VEEVMELVEMKALRNSLVGLPGVDGLSTEQRK 1029
P++++Y ++ Y + V E+ E + + L + LS +R+
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133
Query: 1030 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFE 1088
R+ +A LV P ++ +DEP S +D + ++M +R + ++ H +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAM 192
Query: 1089 AFDELFLMKRGGHVIYAGP----LGRQSHKLVEYFEA---VPGVPKIRD 1130
DE+ +M G ++ G ++ ++ E+ A + V KI D
Sbjct: 193 LADEVAVM-LNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKILD 240
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 66.2 bits (161), Expect = 2e-12
Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 46/233 (19%)
Query: 204 LLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEM 262
LLGP G+GK+ L+ ++G G V G ++T P +R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDY 322
+V + + R + R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 323 VLKILGLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQ 382
+ + + +SGG+++RV LV + L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 383 IVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGPREYVLD 435
++ +R + DV ++ E L D++ ++ G IV +G + +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 50.0 bits (118), Expect = 3e-07
Identities = 25/191 (13%), Positives = 42/191 (21%), Gaps = 29/191 (15%)
Query: 920 ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVT 979
+ G G GKTTL+ + R R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 980 IYESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVA 1039
+ + S + K + V
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE---------------ELAIPILERAYREAKKD 98
Query: 1040 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1099
+I +DE + + D VV TI + E+ + G
Sbjct: 99 RRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKEIRRLP-G 154
Query: 1100 GHVIYAGPLGR 1110
+I P R
Sbjct: 155 AVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 203 LLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEM 262
++ G PG GKTTL++ + + K + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 263 TVRETLDFSGRCLGVGTRFELL 284
+ T GV ++
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (90), Expect = 0.002
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 199 SRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTY 235
SR ++ GP G+GK+TLL+ L + S S T
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTT 37
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (90), Expect = 0.003
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 198 PSRMTLLLGPPGSGKTTLLQALS----GKSDKSLRVSGRVTYCGHELTEFVPQRTCAYIS 253
R+T ++GP GSGK+ ++ A+ +S K LR S + P +
Sbjct: 23 SDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVEL 82
Query: 254 QHDLHHGEMTVR 265
+ + E+TV
Sbjct: 83 VFEENGEEITVA 94
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.5 bits (88), Expect = 0.003
Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 15/185 (8%)
Query: 203 LLLGPPGSGKTTLLQALSGKSDK----SLRVSGRVTYCGHELTEFVP-----QRTCAYIS 253
++ GP SGKT+LL L+ S + S Y G +T R
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDY 66
Query: 254 QHDLHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSG 313
+ +D + + T E L ++ + + + A K S
Sbjct: 67 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK----SE 122
Query: 314 LKTSLGTDYVLKIL--GLDICADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEI 371
L T+ + L + + + ++ ++ +
Sbjct: 123 LFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANL 182
Query: 372 STGLD 376
+
Sbjct: 183 EASVV 187
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 38.8 bits (89), Expect = 0.003
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 182 KKRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS-LRVSG 231
LE L V+ LL G PGSGKT+L A+ ++ + + +
Sbjct: 15 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 65
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.0 bits (87), Expect = 0.004
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 200 RMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVT----YCGHELTEFVPQRTCAYISQH 255
R +L GP G+GK+TLL+ L + S T G E + T + +
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 60
Query: 256 DLHHGEMTVRETLDFSGR 273
+ E
Sbjct: 61 IAAGDFIEHAEFSGNLYG 78
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1472 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.44 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.3 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.29 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.71 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.42 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.3 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.28 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.88 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.32 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.3 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.27 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.08 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.97 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.48 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.39 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.39 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.16 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.08 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.06 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.06 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.96 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.93 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.91 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.86 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.77 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.74 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.73 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.71 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.71 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.59 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.56 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.48 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.45 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.42 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.36 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.3 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.2 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.12 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.12 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.05 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.05 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.0 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.97 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.86 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.78 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.76 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.75 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.64 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.63 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.62 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.58 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.57 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.54 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.48 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.47 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.42 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.38 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.38 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.37 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.36 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.36 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.22 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.08 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.08 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.07 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.06 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.03 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.01 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.99 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.9 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.89 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.89 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.88 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.86 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.85 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.83 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.82 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.82 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.79 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.76 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.74 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.74 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.69 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.68 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.67 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.66 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.64 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.62 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.6 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.59 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.57 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 93.55 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.55 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.54 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.52 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.43 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.41 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.38 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.32 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.29 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.26 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.24 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.24 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.23 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.16 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.15 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.14 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.12 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.11 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.11 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.05 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.04 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.04 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.02 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.99 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.94 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.93 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.89 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.86 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.85 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.76 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.75 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.74 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.73 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.66 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.63 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.56 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.49 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.49 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.48 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.44 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.43 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.42 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.36 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.17 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.99 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.98 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.9 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.87 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.76 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.74 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.7 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.65 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.63 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.61 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.58 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.53 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.33 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.27 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.23 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.22 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.21 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.17 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.13 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.12 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.05 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.98 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.95 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.94 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.9 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 90.83 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.81 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.77 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.76 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.73 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.73 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.7 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.7 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.63 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.59 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.57 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.57 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.55 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.47 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.41 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.35 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.33 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.3 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.29 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.25 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.18 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.04 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.04 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.99 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.93 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.92 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.91 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.88 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.87 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.87 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.8 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.8 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.72 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.71 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.71 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.67 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.39 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.36 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.25 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.24 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.16 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.16 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.12 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.11 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.1 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.1 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.09 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.01 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.95 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.92 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.89 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 88.87 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.86 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.84 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.83 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.82 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.72 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.71 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.7 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.56 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.56 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.55 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.55 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.53 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.52 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.44 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.43 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.34 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.25 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.22 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.16 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.15 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.12 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.08 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.06 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 88.06 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.04 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.01 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.0 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.0 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.98 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.95 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.86 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.85 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.84 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.79 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.74 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.73 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.62 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.62 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.6 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 87.53 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.52 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.51 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.44 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.41 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.38 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.27 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.26 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.09 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.08 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.03 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.88 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.83 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.82 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 86.76 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 86.72 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 86.67 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.6 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.57 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.55 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.4 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.37 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 86.33 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 86.27 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.25 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.2 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.19 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.18 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.15 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.11 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.05 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.96 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.94 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 85.92 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.89 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 85.84 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.78 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.7 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.7 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 85.67 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.61 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.59 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 85.55 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.53 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 85.5 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.49 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.42 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.38 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.29 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.29 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.23 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.18 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 85.13 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.05 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.02 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 84.93 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 84.93 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 84.86 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.84 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 84.66 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.6 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 84.55 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.54 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.48 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.36 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.32 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 84.22 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.18 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.64 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 83.53 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 83.51 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 83.51 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.5 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.48 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.48 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.46 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.46 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.33 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.3 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 83.29 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.29 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.16 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.11 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.03 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.87 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 82.76 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 82.67 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 82.62 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 82.4 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.35 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 82.29 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.18 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 82.17 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 82.08 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 81.96 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 81.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.84 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.84 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.76 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 81.73 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 81.69 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.61 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.56 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 81.42 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 81.4 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 81.37 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 81.16 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 81.03 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.8 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 80.67 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 80.55 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.45 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 80.39 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 80.28 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.25 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 80.09 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-44 Score=398.17 Aligned_cols=206 Identities=23% Similarity=0.356 Sum_probs=176.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC-ceEEEEcCCCCCCCCCCH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-RTCAYISQHDLHHGEMTV 264 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV 264 (1472)
+++|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++....+. |.+|||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchH
Confidence 57999999999999999999999999999999999999998 99999999999876553 679999999999999999
Q ss_pred HHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCC
Q 045902 265 RETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRG 344 (1472)
Q Consensus 265 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~g 344 (1472)
+||+.|.++.++... .+. +..++++++.+||++.+|..+. .
T Consensus 96 ~enl~~~~~~~~~~~----------~~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------DEI------------------------DKRVRWAAELLQIEELLNRYPA-----Q 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------HHH------------------------HHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHHcCCCH----------HHH------------------------HHHHHHHHHHcCChhhhcCChh-----h
Confidence 999999877654321 110 1135678999999998887665 5
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++.+..|.|+|++.|+ ..++.+++|||++|++|+|
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999988779999988765 5688999999999999999
Q ss_pred EEecChhHHH
Q 045902 425 VYQGPREYVL 434 (1472)
Q Consensus 425 v~~G~~~~~~ 434 (1472)
+++|+++++.
T Consensus 216 v~~G~~~el~ 225 (239)
T d1v43a3 216 LQIGSPTEVY 225 (239)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999984
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.8e-45 Score=398.21 Aligned_cols=208 Identities=23% Similarity=0.350 Sum_probs=149.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-CceEEEEcCCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-QRTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 263 (1472)
.+++|+|||+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+||+++.+..+ +|.+|||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 357999999999999999999999999999999999999998 9999999999987765 467999999999999999
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
|+||+.|+.++.+.. +. +. +..++.+++.+||++.+|..+.+
T Consensus 89 v~eni~~~~~~~~~~----------~~----------~~--------------~~~v~~~l~~~~l~~~~~~~~~~---- 130 (232)
T d2awna2 89 VAENMSFGLKLAGAK----------KE----------VI--------------NQRVNQVAEVLQLAHLLDRKPKA---- 130 (232)
T ss_dssp --------------------------C----------HH--------------HHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCC----------HH----------HH--------------HHHHHHHHHhCCChhhhhCChhh----
Confidence 999999987654321 00 01 11246789999999999887765
Q ss_pred CCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCe
Q 045902 344 GISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGE 423 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~ 423 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..|.|+|++.|. ..++.+++|||++|++|+
T Consensus 131 -LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 131 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999988889999988754 568999999999999999
Q ss_pred EEEecChhHHHH
Q 045902 424 IVYQGPREYVLD 435 (1472)
Q Consensus 424 iv~~G~~~~~~~ 435 (1472)
++++|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHh
Confidence 999999999854
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.7e-44 Score=395.67 Aligned_cols=208 Identities=22% Similarity=0.310 Sum_probs=182.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCC-----C-CceEEEEcCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFV-----P-QRTCAYISQHDLH 258 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~-~~~~~yv~Q~d~~ 258 (1472)
+..+|+|||+.|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.... + ++.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 467999999999999999999999999999999999999998 999999999986432 1 3579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+|.+||+||+.|+.+..+... .+. +..++++++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------~~~------------------------~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------EEI------------------------RKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------HHH------------------------HHHHHHHHHHTTCGGGTTSCGG
T ss_pred cccccHHHHhhhhhHhhcCCH----------HHH------------------------HHHHHHHHhhcChHhhhhCChh
Confidence 999999999999877554321 000 1125678999999998887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+..|.|+|++.|. ..++.+++|||++
T Consensus 140 ~-----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 E-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGV 213 (242)
T ss_dssp G-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred h-----CCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECC-HHHHHHhCCEEEE
Confidence 5 999999999999999999999999999999999999999999999987778999888765 5688899999999
Q ss_pred ecCCeEEEecChhHHHH
Q 045902 419 LSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~~ 435 (1472)
|++|+|++.|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-44 Score=397.60 Aligned_cols=199 Identities=26% Similarity=0.388 Sum_probs=142.8
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCC
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVT 979 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lT 979 (1472)
++.++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.. ...+|.+|||+|++.+++.+|
T Consensus 11 g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 45789999999999999999999999999999999999987 459999999998754 234577999999999999999
Q ss_pred HHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCH
Q 045902 980 IYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1055 (1472)
Q Consensus 980 v~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~ 1055 (1472)
|+||+.|...++. +.+ ++++++++.+++.+..|+.. ..|||||||||+|||||+.+|++|+|||||+|||+
T Consensus 89 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~ 163 (232)
T d2awna2 89 VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 163 (232)
T ss_dssp ----------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTTSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 9999999877653 222 46788999999988887764 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1056 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1056 ~~~~~i~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.++..+++.|+++.+ .|.|||++||++. ++.+.|||+++|.+ |+++..|++
T Consensus 164 ~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 164 ALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 999999999999964 5999999999986 57888999999985 799999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.6e-44 Score=397.41 Aligned_cols=209 Identities=23% Similarity=0.357 Sum_probs=176.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|++..+ ++.++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 7 I~v~nlsk~y-------------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 71 (239)
T d1v43a3 7 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 71 (239)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEEcceecc
Confidence 5677776554 457899999999999999999999999999999999999874 5999999999875
Q ss_pred h-hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCc-h---HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHH
Q 045902 958 Q-ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPK-D---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLT 1032 (1472)
Q Consensus 958 ~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~-~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~ 1032 (1472)
. ...+|.+|||+|++.+++.+||+||+.|.+.++.-. + +.++++++.+++.++.|+.. ..|||||||||+
T Consensus 72 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRva 146 (239)
T d1v43a3 72 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVA 146 (239)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHH
T ss_pred cCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHH
Confidence 4 334567999999999999999999999887665432 2 45778899999988877653 479999999999
Q ss_pred HHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1033 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1033 iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++|||+. ++.+.|||+++|++ |+++..|++
T Consensus 147 iAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 221 (239)
T d1v43a3 147 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 221 (239)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999765 999999999986 57889999999986 799999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.3e-44 Score=392.38 Aligned_cols=202 Identities=24% Similarity=0.342 Sum_probs=180.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC-ceEEEEcCCCCCCCCCCHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-RTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~ 265 (1472)
.+|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+..+. +.+|||+|++.++|.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHH
Confidence 3799999999999999999999999999999999999998 99999999999876653 5799999999999999999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.|+.+.++... ...++.+++.+||++.+|..+++ |
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPLT-----L 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGGG-----S
T ss_pred HHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCChhh-----C
Confidence 99999876543211 01245578899999998877765 9
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEE
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv 425 (1472)
||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..|.|+|++.|. ..++.+++|||++|++|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd-~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEE
T ss_pred CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCC-HHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999988788999887765 56889999999999999999
Q ss_pred EecChhHHH
Q 045902 426 YQGPREYVL 434 (1472)
Q Consensus 426 ~~G~~~~~~ 434 (1472)
++|+++++.
T Consensus 208 ~~g~~~el~ 216 (229)
T d3d31a2 208 QVGKPEEIF 216 (229)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.8e-44 Score=393.06 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=182.7
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.++|++..+ ++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~i~v~nl~k~y-------------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 35677776654 35679999999999999999999999999999999999987 4599999999875
Q ss_pred Ch---h----cccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCH
Q 045902 957 KQ---E----TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLST 1025 (1472)
Q Consensus 957 ~~---~----~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSg 1025 (1472)
.. . ..+|.+|||+|++.++|.+||+||+.|...++. +.+ ++++++++.+++.+..+... ..|||
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSG 142 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----RELSG 142 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCH
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCH
Confidence 32 1 125679999999999999999999999887764 322 45788889999888777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIY 1104 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~ 1104 (1472)
||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++|||++ ++...|||+++|.+ |++++
T Consensus 143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~iv~ 220 (240)
T d1g2912 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQ 220 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999766 999999999976 57788999999985 79999
Q ss_pred EcCC
Q 045902 1105 AGPL 1108 (1472)
Q Consensus 1105 ~g~~ 1108 (1472)
.|++
T Consensus 221 ~G~~ 224 (240)
T d1g2912 221 VGSP 224 (240)
T ss_dssp EECH
T ss_pred EcCH
Confidence 9986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.2e-44 Score=393.67 Aligned_cols=196 Identities=22% Similarity=0.291 Sum_probs=176.7
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYE 982 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e 982 (1472)
.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|+++.. ...+|.+|||+|++.++|.+||+|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCCEEEEccEeccccchhHhcceeeccccccCccccHHH
Confidence 489999999999999999999999999999999999874 59999999998754 234567999999999999999999
Q ss_pred HHHHHHHcCC-CchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH
Q 045902 983 SLLYSAWLRL-PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1061 (1472)
Q Consensus 983 ~l~~~~~l~~-~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i 1061 (1472)
|+.|...++. +..++++++++.+++.++.|+.. ..|||||||||+|||||+++|++|+|||||+|||+.++..+
T Consensus 92 nl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i 166 (229)
T d3d31a2 92 NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166 (229)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHH
Confidence 9999887653 44567899999999998888764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1062 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1062 ~~~l~~l~~-~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
++.|+++.+ .|.|||++||++. ++.+.|||+++|++ |+++..|++
T Consensus 167 ~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 167 REMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999965 5999999999986 58889999999986 799999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-44 Score=394.73 Aligned_cols=208 Identities=25% Similarity=0.335 Sum_probs=182.5
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC------ceEEEEcCCC
Q 045902 183 KRKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ------RTCAYISQHD 256 (1472)
Q Consensus 183 ~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~------~~~~yv~Q~d 256 (1472)
+....+|+|||+.|++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++.....+ +.+|||+|++
T Consensus 15 ~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~ 91 (240)
T d3dhwc1 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (240)
T ss_dssp SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhcccccccccc
Confidence 34457999999999999999999999999999999999999998 99999999999776532 5699999999
Q ss_pred CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccc
Q 045902 257 LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIM 336 (1472)
Q Consensus 257 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 336 (1472)
.+++.+||+||+.|+.+..+... .+. ...++.+|+.+||++.+|..
T Consensus 92 ~l~~~~tv~eni~~~l~~~~~~~--------------------~~~--------------~~~v~~~L~~vgL~~~~~~~ 137 (240)
T d3dhwc1 92 NLLSSRTVFGNVALPLELDNTPK--------------------DEV--------------KRRVTELLSLVGLGDKHDSY 137 (240)
T ss_dssp CCCTTSBHHHHHHHHHHTTTCCT--------------------THH--------------HHHHHHHHHHHSTTTTTSSC
T ss_pred ccCCCccHHHHHHHHHHHcCCCH--------------------HHH--------------HHHHHHHHHHcCCchhhhCC
Confidence 99999999999999876554321 111 11246789999999988877
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 337 VGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 337 vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
+++ |||||||||+|||||+.+|++||+||||+|||+.++.+|++.|+++.+..|.|+|++.|+ ..++..++|||
T Consensus 138 ~~~-----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-l~~~~~~~dri 211 (240)
T d3dhwc1 138 PSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCV 211 (240)
T ss_dssp BSC-----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC-HHHHHHHCSEE
T ss_pred hhh-----CCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC-HHHHHHhCCEE
Confidence 654 999999999999999999999999999999999999999999999988778999887754 56888999999
Q ss_pred EEecCCeEEEecChhHH
Q 045902 417 ILLSEGEIVYQGPREYV 433 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~ 433 (1472)
++|++|+|++.|+++++
T Consensus 212 ~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 212 AVISNGELIEQDTVSEV 228 (240)
T ss_dssp EEEETTEEEEEEETTTT
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999999987
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-44 Score=392.13 Aligned_cols=214 Identities=24% Similarity=0.333 Sum_probs=182.7
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|++..+... ....++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 4677777655321 123468999999999999999999999999999999999987 45999999999863
Q ss_pred h---h---cccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHH
Q 045902 958 Q---E---TFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 958 ~---~---~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq 1027 (1472)
. . .+++.+|||+|++.+++.+||+||+.|...++. +.+ +.++++++.++|.+..|... ..|||||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~ 145 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQ 145 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHH
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 2 1 244679999999999999999999999887653 333 45778888888887776654 4799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||+|||||+.+|++|||||||+|||+.++..|++.|+++.++ |.|||++|||+. ++...|||+++|++ |++++.|
T Consensus 146 ~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv~~G 223 (240)
T d3dhwc1 146 KQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQD 223 (240)
T ss_dssp HHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999766 999999999976 47778999999985 7999999
Q ss_pred CCC
Q 045902 1107 PLG 1109 (1472)
Q Consensus 1107 ~~~ 1109 (1472)
++.
T Consensus 224 ~~~ 226 (240)
T d3dhwc1 224 TVS 226 (240)
T ss_dssp ETT
T ss_pred CHH
Confidence 874
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.1e-44 Score=393.46 Aligned_cols=211 Identities=27% Similarity=0.401 Sum_probs=183.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.++ .++..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 4 i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i~ 70 (242)
T d1oxxk2 4 IIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVA 70 (242)
T ss_dssp EEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-----------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC--CCceEEECCEEee
Confidence 56788877652 1346799999999999999999999999999999999998874 5999999998753
Q ss_pred h------hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-Cch---HHHHHHHHHcccccccccccCCCCCCCCCHHH
Q 045902 958 Q------ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRL-PKD---MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 958 ~------~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-~~~---~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGq 1027 (1472)
. ...+|.+|||+|++.++|.+||+||+.|....+. +.+ ++++++++.+++.+..|... ..|||||
T Consensus 71 ~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LSGGq 145 (242)
T d1oxxk2 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQ 145 (242)
T ss_dssp ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred cCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhCCHHH
Confidence 2 2235679999999999999999999999876543 322 45788999999988777664 4799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.+.|||+++|++ |+++..|
T Consensus 146 kQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv~~g 223 (242)
T d1oxxk2 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVG 223 (242)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEE
T ss_pred HhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999655 999999999986 57889999999986 7999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
++
T Consensus 224 ~~ 225 (242)
T d1oxxk2 224 KP 225 (242)
T ss_dssp CH
T ss_pred CH
Confidence 86
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-43 Score=387.48 Aligned_cols=216 Identities=23% Similarity=0.359 Sum_probs=176.8
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|++..+... .+...+|+||||+|++||++||+|||||||||||++|+|..+ +.+|+|.++|+++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 4677777665421 123468999999999999999999999999999999999887 45999999999864
Q ss_pred h---hc----ccceeEEeccCCCCCCCCCHHHHHHHHHHcCC----CchHHHHHHHHHcccccccccccCCCCCCCCCHH
Q 045902 958 Q---ET----FARISGYCEQNDIHSPNVTIYESLLYSAWLRL----PKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 958 ~---~~----~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~----~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
. .. +++.+|||+|++.++|.+||+||+.+....+. +.++..+++.+.+++.++.+.... ..+..||||
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~p~~LSGG 149 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN-HKPNQLSGG 149 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTT-CCGGGSCHH
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhc-CChhhCCHH
Confidence 3 11 23569999999999999999999999877642 233455566666666665554322 124579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+|||||+.+|+||+|||||+|||+.++..|++.|+++.++ |.|||++|||++ +.+.|||+++|.+ |+++..
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~Iv~~ 226 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVERE 226 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEE
T ss_pred HHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999765 999999999964 4589999999986 799998
Q ss_pred cCC
Q 045902 1106 GPL 1108 (1472)
Q Consensus 1106 g~~ 1108 (1472)
|++
T Consensus 227 g~~ 229 (230)
T d1l2ta_ 227 EKL 229 (230)
T ss_dssp EEC
T ss_pred ccC
Confidence 864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.6e-43 Score=390.02 Aligned_cols=207 Identities=25% Similarity=0.339 Sum_probs=181.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC-------CceEEEEcCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP-------QRTCAYISQHDLH 258 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 258 (1472)
+++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhh
Confidence 56999999999999999999999999999999999999998 9999999998754321 3679999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCccccccccc
Q 045902 259 HGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVG 338 (1472)
Q Consensus 259 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 338 (1472)
+|.+||+||+.|+.+..+... .+. +..++++++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------~e~------------------------~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------QEI------------------------DQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------HHH------------------------HHHHHHHHHHHTCGGGTTCCGG
T ss_pred cchhhhhHhhhhhHHHcCCCH----------HHH------------------------HHHHHHHHHHcCChhHhcCChh
Confidence 999999999999877654321 110 1135678999999998887765
Q ss_pred CccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 339 NEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 339 ~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
+ |||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..|.|+|++.|+ .+++.+++|||++
T Consensus 139 ~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-~~~~~~~~drv~v 212 (240)
T d1g2912 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAV 212 (240)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCC-HHHHHHhCCEEEE
Confidence 4 999999999999999999999999999999999999999999999988778999988764 5688999999999
Q ss_pred ecCCeEEEecChhHHHH
Q 045902 419 LSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 419 L~~G~iv~~G~~~~~~~ 435 (1472)
|++|++++.|+++++.+
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999853
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8e-43 Score=382.59 Aligned_cols=206 Identities=20% Similarity=0.253 Sum_probs=174.9
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC-------ceEEEEcCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-------RTCAYISQHD 256 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q~d 256 (1472)
....+|+|||+.|++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++....++ +.+|||+|++
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecch
Confidence 3457899999999999999999999999999999999999998 99999999999876543 3599999999
Q ss_pred CCCCCCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcc-cccc
Q 045902 257 LHHGEMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDI-CADI 335 (1472)
Q Consensus 257 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt 335 (1472)
.++|.+||+||+.++......+.. +..+. ...+..+++.+||.+ .+|.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~-------~~~~~------------------------~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAM-------SGEER------------------------RKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCC-------CHHHH------------------------HHHHHHHHHHTTCCGGGTTC
T ss_pred hhCcCccHHHHHhHHHHHhccCCC-------CHHHH------------------------HHHHHHHHHhhchhhhhhcC
Confidence 999999999999998765432210 00000 012345788999976 4676
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCe
Q 045902 336 MVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDD 415 (1472)
Q Consensus 336 ~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ 415 (1472)
.+. .|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+..|.|+|++.|++ .+ .++|||
T Consensus 142 ~p~-----~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~-a~~~dr 214 (230)
T d1l2ta_ 142 KPN-----QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NV-ARFGER 214 (230)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HH-HTTSSE
T ss_pred Chh-----hCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HH-HHhCCE
Confidence 665 49999999999999999999999999999999999999999999999888899999998875 34 489999
Q ss_pred EEEecCCeEEEecCh
Q 045902 416 IILLSEGEIVYQGPR 430 (1472)
Q Consensus 416 iilL~~G~iv~~G~~ 430 (1472)
|++|++|+|+++|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEeccC
Confidence 999999999999864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-42 Score=386.23 Aligned_cols=213 Identities=21% Similarity=0.364 Sum_probs=180.7
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|++..+ ++.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|++
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred eEEEEeeEEEEE-------------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEecccc
Confidence 456778877654 457899999999999999999999999999999999998874 59999999998
Q ss_pred CChh---cc-cceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch---HHHHHHHHHc-ccccccccccCCCCCCCCCHHH
Q 045902 956 KKQE---TF-ARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD---MFVEEVMELV-EMKALRNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 956 ~~~~---~~-~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~---~~~~~v~~~l-~l~~~~~~~~~~~~~~~LSgGq 1027 (1472)
+... .. +..++|++|+..+++.+||+||+.+.+..+.+.+ ...+++++.+ ++.+..++.. ..|||||
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSGG~ 144 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGE 144 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHH
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCch-----hhCCHHH
Confidence 6432 22 2348999999999999999999988776554433 2345566655 5666666654 3799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+.+ ++.+.|||+++|++ |++++.|+
T Consensus 145 ~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 222 (240)
T d1ji0a_ 145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGK 222 (240)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999988999999999986 57889999999985 79999998
Q ss_pred CCc
Q 045902 1108 LGR 1110 (1472)
Q Consensus 1108 ~~~ 1110 (1472)
+.+
T Consensus 223 ~~e 225 (240)
T d1ji0a_ 223 ASE 225 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-42 Score=385.47 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=183.6
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|++..+ +++++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|++..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECcEecc
Confidence 4567776543 567899999999999999999999999999999999999874 5999999999864
Q ss_pred h--hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCch----HHHHHHHHHcccccccccccCCCCCCCCCHHHHHHH
Q 045902 958 Q--ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKD----MFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRL 1031 (1472)
Q Consensus 958 ~--~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~----~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl 1031 (1472)
. ...++.+|||||++.+++.+|+.||+.|.+.++.... +.++++++.+++.+..+..++ .||||||||+
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv 142 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKL 142 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHH
T ss_pred cChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHH
Confidence 3 3456789999999999999999999998876654333 346778888888888877654 7999999999
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+|||||+++|+||+|||||+|||+.++..++++|++++++|+|||++||+++ ++...|||+++|++ |++++.|++.
T Consensus 143 ~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~ 218 (238)
T d1vpla_ 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVE 218 (238)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEHH
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999999999999999989999999999986 57788999999985 7999999863
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-41 Score=375.07 Aligned_cols=210 Identities=25% Similarity=0.357 Sum_probs=171.4
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCC
Q 045902 184 RKLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHG 260 (1472)
Q Consensus 184 ~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 260 (1472)
..+.+|+|||+.|++||.++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+|
T Consensus 14 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf- 89 (241)
T d2pmka1 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL- 89 (241)
T ss_dssp TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-
T ss_pred CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-
Confidence 3457999999999999999999999999999999999999998 9999999999988764 46899999998876
Q ss_pred CCCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCc
Q 045902 261 EMTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNE 340 (1472)
Q Consensus 261 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 340 (1472)
..||+|||.|+..... . +++....+.+.+ .. ....++...||.+|.
T Consensus 90 ~~Ti~eNi~~~~~~~~----~------------------~~~~~~~~~~~~---------~~--~i~~~~~~~~t~i~~- 135 (241)
T d2pmka1 90 NRSIIDNISLANPGMS----V------------------EKVIYAAKLAGA---------HD--FISELREGYNTIVGE- 135 (241)
T ss_dssp TSBHHHHHCTTSTTCC----H------------------HHHHHHHHHHTC---------HH--HHTTSTTGGGSBCST-
T ss_pred CccccccccccCcccc----H------------------HHHHHHHHHHhh---------HH--HHHhhhcchhhhcCC-
Confidence 5699999987532110 0 111111111110 11 122355667888874
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
.+..|||||||||+|||||+.+|+||+||||||+||+.++.+|++.|+++.+ ++|+|++.|++. ..+.||+|++|+
T Consensus 136 ~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~i~vl~ 211 (241)
T d2pmka1 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS--TVKNADRIIVME 211 (241)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGG--GGTTSSEEEEEE
T ss_pred CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHH--HHHhCCEEEEEE
Confidence 5678999999999999999999999999999999999999999999999864 789998887763 457899999999
Q ss_pred CCeEEEecChhHHHH
Q 045902 421 EGEIVYQGPREYVLD 435 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~~ 435 (1472)
+|+|+++|++++++.
T Consensus 212 ~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 212 KGKIVEQGKHKELLS 226 (241)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.2e-42 Score=374.82 Aligned_cols=199 Identities=23% Similarity=0.351 Sum_probs=175.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC-ceEEEEcCCCCCCCCCCHHHHHH
Q 045902 191 DVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ-RTCAYISQHDLHHGEMTVRETLD 269 (1472)
Q Consensus 191 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E~l~ 269 (1472)
|||+.+. +|+++|+|||||||||||++|+|.++|+ +|+|.+||+++....+. +.+|||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999998 99999999999887654 67999999999999999999999
Q ss_pred HhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCChHH
Q 045902 270 FSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGISGGQ 349 (1472)
Q Consensus 270 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLSGGq 349 (1472)
|+.+... +.+. +..++++++.+||++.+|..+.. |||||
T Consensus 93 ~~l~~~~------------~~~~------------------------~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~ 131 (240)
T d2onka1 93 YGLRNVE------------RVER------------------------DRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131 (240)
T ss_dssp TTCTTSC------------HHHH------------------------HHHHHHHHHTTTCTTTTTCCGGG-----SCHHH
T ss_pred hhhcccC------------HHHH------------------------HHHHHHHHHhcCcHhhhhCChhh-----CCHHH
Confidence 9753210 1111 01246789999999988877764 99999
Q ss_pred HHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEEEecC
Q 045902 350 KKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIVYQGP 429 (1472)
Q Consensus 350 rkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv~~G~ 429 (1472)
||||+|||||+.+|++|+|||||+|||+.++.++.+.++++.+..+.|+|++.|+ ..++.+++|+|++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd-~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC-HHHHHHhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999988778898887765 568899999999999999999999
Q ss_pred hhHHHH
Q 045902 430 REYVLD 435 (1472)
Q Consensus 430 ~~~~~~ 435 (1472)
++++.+
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999863
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.9e-42 Score=383.13 Aligned_cols=210 Identities=24% Similarity=0.335 Sum_probs=179.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+..+|++..+ ++.++|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 5 L~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i~ 69 (254)
T d1g6ha_ 5 LRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDIT 69 (254)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC--CCcEEEECCEecc
Confidence 5666765443 457899999999999999999999999999999999999874 5999999999864
Q ss_pred hh---c-ccceeEEeccCCCCCCCCCHHHHHHHHHHcCC-------------C-ch---HHHHHHHHHcccccccccccC
Q 045902 958 QE---T-FARISGYCEQNDIHSPNVTIYESLLYSAWLRL-------------P-KD---MFVEEVMELVEMKALRNSLVG 1016 (1472)
Q Consensus 958 ~~---~-~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~-------------~-~~---~~~~~v~~~l~l~~~~~~~~~ 1016 (1472)
.. . .++.++|++|++.+++.+||.||+.++...+. + .+ +.++++++.+++.+..|+.++
T Consensus 70 ~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (254)
T d1g6ha_ 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 149 (254)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred chhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh
Confidence 32 2 23458999999999999999999987543221 1 11 345677888888888777654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1017 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1017 ~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|
T Consensus 150 -----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm 223 (254)
T d1g6ha_ 150 -----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 223 (254)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred -----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEE
Confidence 79999999999999999999999999999999999999999999999988999999999997 588999999999
Q ss_pred ecCcEEEEEcCCC
Q 045902 1097 KRGGHVIYAGPLG 1109 (1472)
Q Consensus 1097 ~~gg~v~~~g~~~ 1109 (1472)
.+ |+++..|+..
T Consensus 224 ~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 224 FN-GQIIAEGRGE 235 (254)
T ss_dssp ET-TEEEEEEESH
T ss_pred eC-CEEEEEecHH
Confidence 85 7999999874
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.4e-41 Score=378.93 Aligned_cols=199 Identities=22% Similarity=0.307 Sum_probs=170.1
Q ss_pred ccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh----------------hcccce
Q 045902 901 NRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ----------------ETFARI 964 (1472)
Q Consensus 901 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~----------------~~~~~~ 964 (1472)
++.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.
T Consensus 13 g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ 90 (258)
T d1b0ua_ 13 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90 (258)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC--CCCCEEECCEEeccCCccchhcccccHhHHHHHhcc
Confidence 456899999999999999999999999999999999998874 59999999987631 124567
Q ss_pred eEEeccCCCCCCCCCHHHHHHHHHH-c-CCCch---HHHHHHHHHcccccc-cccccCCCCCCCCCHHHHHHHHHHHHHh
Q 045902 965 SGYCEQNDIHSPNVTIYESLLYSAW-L-RLPKD---MFVEEVMELVEMKAL-RNSLVGLPGVDGLSTEQRKRLTIAVELV 1038 (1472)
Q Consensus 965 ~gyv~Q~~~~~~~lTv~e~l~~~~~-l-~~~~~---~~~~~v~~~l~l~~~-~~~~~~~~~~~~LSgGqrqRl~iA~aL~ 1038 (1472)
+|||+|++.+++.+||.||+.+... . ..+.. +.+.++++.+++.+. .++. +..|||||||||+|||||+
T Consensus 91 ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----p~~LSGG~~QRv~iAraL~ 165 (258)
T d1b0ua_ 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARALA 165 (258)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----GGGSCHHHHHHHHHHHHHH
T ss_pred eEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccC-----cccccHHHHHHHHHHHHHh
Confidence 9999999999999999999988643 2 22333 345667777777553 2332 3479999999999999999
Q ss_pred hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1039 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1039 ~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.+|++|||||||+|||+.++..|++.|++++++|.|||++|||+. ++...|||+++|.+ |++++.|++
T Consensus 166 ~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999989999999999986 57788999999985 799999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-41 Score=378.13 Aligned_cols=212 Identities=22% Similarity=0.345 Sum_probs=173.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 261 (1472)
++.+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+|+
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG- 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccC-
Confidence 457999999999999999999999999999999999999998 9999999999987654 367999999998875
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||+||+.|+...... .. +. ....+.. + ... ..-+|++..||.++ +.
T Consensus 102 ~tv~eni~~g~~~~~~--~~----~~---------------~~~~~~~---~------~~~--~i~~l~~g~~~~i~-~~ 148 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKPT--ME----EI---------------TAAAVKS---G------AHS--FISGLPQGYDTEVD-EA 148 (251)
T ss_dssp SBHHHHHHCSCSSCCC--HH----HH---------------HHHHHHH---T------CHH--HHHTSTTGGGCBCC-SS
T ss_pred cchhhhhhhhhcccch--HH----HH---------------HHHHHHH---H------HHH--HHHhccccchhhHh-cc
Confidence 6999999886432110 00 00 0000000 0 011 12356667788887 56
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+..|||||||||+|||||+.+|+|++||||||+||+.++.+|++.|+++.+..++|+|++.|+. +..+.||+|++|++
T Consensus 149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEG 226 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEET
T ss_pred CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH--HHHHhCCEEEEEEC
Confidence 7789999999999999999999999999999999999999999999998776789999988775 35577999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+|+++|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1e-40 Score=369.76 Aligned_cols=208 Identities=26% Similarity=0.309 Sum_probs=181.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC--CceEEEEcCCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP--QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~l 262 (1472)
++++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||||++.+++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCCc
Confidence 457999999999999999999999999999999999999998 9999999999865422 36799999999999999
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.|.+.+.+... .++ ...++.+++.+||.+..|..+++
T Consensus 91 tv~e~l~~~~~~~~~~~--------------------~~~--------------~~~~~~~l~~~~l~~~~~~~~~~--- 133 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS--------------------SEI--------------EEMVERATEIAGLGEKIKDRVST--- 133 (238)
T ss_dssp BHHHHHHHHHHHHCCCH--------------------HHH--------------HHHHHHHHHHHCCGGGGGSBGGG---
T ss_pred cHHHHHHHHHHhcCCCH--------------------HHH--------------HHHHHHHHHhCCCHHHHhhhhhh---
Confidence 99999999765543210 001 11245678899999998887765
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
|||||||||+||+||+++|++|+|||||+|||+.++.++.+.++++++ .|.|++++.|+ ..++..+||||++|++|
T Consensus 134 --lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~-l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 134 --YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHN-MLEVEFLCDRIALIHNG 209 (238)
T ss_dssp --CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECC-HHHHTTTCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 48899988765 56899999999999999
Q ss_pred eEEEecChhHHHHH
Q 045902 423 EIVYQGPREYVLDF 436 (1472)
Q Consensus 423 ~iv~~G~~~~~~~~ 436 (1472)
++++.|+++++.+.
T Consensus 210 ~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 210 TIVETGTVEELKER 223 (238)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEEcCHHHHHhc
Confidence 99999999999764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-41 Score=371.67 Aligned_cols=190 Identities=23% Similarity=0.380 Sum_probs=166.8
Q ss_pred cceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeEEeccCCCCCCCCCHHHHHHH
Q 045902 908 DVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ-ETFARISGYCEQNDIHSPNVTIYESLLY 986 (1472)
Q Consensus 908 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~~ 986 (1472)
||||++. ||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...+|.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 689999999999999999999999874 59999999998754 2345779999999999999999999998
Q ss_pred HHHcCCCc---hHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHH
Q 045902 987 SAWLRLPK---DMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1063 (1472)
Q Consensus 987 ~~~l~~~~---~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~ 1063 (1472)
+.+. .+. +++++++++.+++.++.+... ..|||||||||+|||||+++|++|+|||||+|||+.++..+++
T Consensus 94 ~l~~-~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~ 167 (240)
T d2onka1 94 GLRN-VERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167 (240)
T ss_dssp TCTT-SCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred hhcc-cCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHH
Confidence 6432 222 246788888888888777664 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1064 TVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1064 ~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.|+++.++ |.|||++||+++ ++.+.|||+++|.+ |+++..|++
T Consensus 168 ~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 168 ELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 99999765 999999999986 68889999999985 799999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-40 Score=370.06 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=173.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC----ceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ----RTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....++ ..++|++|+..+++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCCc
Confidence 57999999999999999999999999999999999999998 99999999999876442 349999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHh-CCcccccccccCc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKIL-GLDICADIMVGNE 340 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~ 340 (1472)
+||+||+.+.+....... ..++ ..+.+++.+ +|++.+|..+++
T Consensus 96 ltv~en~~~~~~~~~~~~---------------------~~~~--------------~~~~~~~~~~~l~~~~~~~~~~- 139 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKE---------------------GIKR--------------DLEWIFSLFPRLKERLKQLGGT- 139 (240)
T ss_dssp SBHHHHHHGGGTTCCCSS---------------------HHHH--------------HHHHHHHHCHHHHTTTTSBSSS-
T ss_pred ccHHHHHHHHHHhcCCHH---------------------HHHH--------------HHHHHHHHhhChHHHHhCchhh-
Confidence 999999988764332110 0000 123344444 577777877765
Q ss_pred cCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEec
Q 045902 341 MRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLS 420 (1472)
Q Consensus 341 ~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~ 420 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++++ .|.|++++.|+ ..++.+++|||++|+
T Consensus 140 ----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH~-l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 140 ----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQN-ALGALKVAHYGYVLE 213 (240)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESC-HHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999977 48888887654 568899999999999
Q ss_pred CCeEEEecChhHHH
Q 045902 421 EGEIVYQGPREYVL 434 (1472)
Q Consensus 421 ~G~iv~~G~~~~~~ 434 (1472)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999999875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-40 Score=369.31 Aligned_cols=210 Identities=26% Similarity=0.390 Sum_probs=172.9
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.|+|++|.++ .+++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+||+++.
T Consensus 2 I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred eEEEEEEEEeC-----------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC--CCCEEEECCEEec
Confidence 67899988763 2346799999999999999999999999999999999998874 5999999999874
Q ss_pred h---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHHH
Q 045902 958 Q---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgGq 1027 (1472)
. ..+++.+|||+|++.+++ .||+||+.+... ....+.+.++.+..++... .++.++.. ...|||||
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g~~LSGGq 144 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ-GAGLSGGQ 144 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTT-TTCCCHHH
T ss_pred ccchhhhhceEEEEecccccCC-ccccccccccCc--cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCC-CCccCHHH
Confidence 3 456788999999998764 699999977421 1223444455554444322 33444443 35799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|||++||+++ ..+.||+|++|++ |+++..|+
T Consensus 145 ~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~-G~Iv~~G~ 220 (241)
T d2pmka1 145 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGK 220 (241)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-TEEEEEEC
T ss_pred HHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECC
Confidence 9999999999999999999999999999999999999999864 899999999986 4578999999985 89999998
Q ss_pred C
Q 045902 1108 L 1108 (1472)
Q Consensus 1108 ~ 1108 (1472)
.
T Consensus 221 ~ 221 (241)
T d2pmka1 221 H 221 (241)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.1e-40 Score=368.86 Aligned_cols=209 Identities=24% Similarity=0.384 Sum_probs=171.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 261 (1472)
..++|+|||+.|++||.++|+||||||||||+++|+|+++|+ +|+|.+||+++.++.. ++.++||+|++.+| .
T Consensus 30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 105 (255)
T d2hyda1 30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-S 105 (255)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-S
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-C
Confidence 356899999999999999999999999999999999999998 9999999999987654 46899999998877 5
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.||+|||.|+.... . ++++.+..+. .+. .+ . ...|++..||.+|+ .
T Consensus 106 ~Ti~eNi~~g~~~~---~-------------------~~~~~~al~~---~~l-----~~-~--i~~lp~gl~t~i~~-~ 151 (255)
T d2hyda1 106 DTVKENILLGRPTA---T-------------------DEEVVEAAKM---ANA-----HD-F--IMNLPQGYDTEVGE-R 151 (255)
T ss_dssp SBHHHHHGGGCSSC---C-------------------HHHHHHHHHH---TTC-----HH-H--HHTSTTGGGCBCCG-G
T ss_pred CCHHHHHhccCcCC---C-------------------HHHHHHHHHH---hCC-----HH-H--HHhccccccchhcC-C
Confidence 69999998863211 0 0111111111 111 11 1 23567778999984 6
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+..|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|++.|++. ....||+|++|++
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~--~~~~~D~ii~l~~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS--TITHADKIVVIEN 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG--GTTTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 678999999999999999999999999999999999999999999998864 689888877653 5578999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+|++.|+++++++
T Consensus 228 G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 228 GHIVETGTHRELIA 241 (255)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-40 Score=369.71 Aligned_cols=219 Identities=26% Similarity=0.342 Sum_probs=181.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC----ceEEEEcCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ----RTCAYISQHDLHHGE 261 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 261 (1472)
+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....++ +.++|++|++.+++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCCC
Confidence 56999999999999999999999999999999999999998 99999999999876653 359999999999999
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
+||+||+.++....+....... ........+.+. ...++.+++.+|+++..|+.+++
T Consensus 94 ltv~enl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~-- 150 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLNSL-------FYKKWIPKEEEM--------------VEKAFKILEFLKLSHLYDRKAGE-- 150 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHHHH-------HHCSSCCCCHHH--------------HHHHHHHHHHTTCGGGTTSBGGG--
T ss_pred Ceeeeeeeehhhhccccchhhh-------hhhcccccHHHH--------------HHHHHHHHHhcCcchhccCchhh--
Confidence 9999999997655432211000 000111111111 01245678999999999988876
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++++ .|.|++++.| ..+++.++||||++|++
T Consensus 151 ---LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsH-dl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 151 ---LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEH-RLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECS-CCSTTGGGCSEEEEEET
T ss_pred ---CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-cHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999976 5888888654 56689999999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+++++|+++|+.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEecHHHHhh
Confidence 99999999987643
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.7e-40 Score=367.70 Aligned_cols=206 Identities=24% Similarity=0.319 Sum_probs=173.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC----------------CceE
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP----------------QRTC 249 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----------------~~~~ 249 (1472)
.++|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|++++...+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 46999999999999999999999999999999999999998 9999999999864322 2469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhhh-ccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhC
Q 045902 250 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILG 328 (1472)
Q Consensus 250 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 328 (1472)
|||+|++.+++.+||+||+.++.. ..+.. +.+ .+ ..+..+++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------~~~----------~~--------------~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KHD----------AR--------------ERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HHH----------HH--------------HHHHHHHHHTT
T ss_pred EEEEechhhccchhcchhhhhhHHHhcCCC----------HHH----------HH--------------HHHHHHHHHcC
Confidence 999999999999999999998642 21110 000 00 12356788999
Q ss_pred Cccc-ccccccCccCCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcc
Q 045902 329 LDIC-ADIMVGNEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAP 407 (1472)
Q Consensus 329 L~~~-~dt~vg~~~~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~ 407 (1472)
|.+. .|..++ .|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++++ .|.|+|++. |...
T Consensus 138 l~~~~~~~~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vt-Hdl~ 210 (258)
T d1b0ua_ 138 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEMG 210 (258)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEEC-SCHH
T ss_pred CchhhhccCcc-----cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEe-CCHH
Confidence 9763 455554 4999999999999999999999999999999999999999999999986 578877765 5567
Q ss_pred hHHhccCeEEEecCCeEEEecChhHHHH
Q 045902 408 ETYDLFDDIILLSEGEIVYQGPREYVLD 435 (1472)
Q Consensus 408 ~~~~~fD~iilL~~G~iv~~G~~~~~~~ 435 (1472)
++..+||||++|++|+|+++|+++++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 8899999999999999999999999853
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=6.4e-41 Score=372.72 Aligned_cols=209 Identities=21% Similarity=0.311 Sum_probs=169.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCCC
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGEM 262 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 262 (1472)
+++|+|||+.|+|||+++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|+.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc-
Confidence 36899999999999999999999999999999999999998 9999999999987654 4679999999988865
Q ss_pred CHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccC
Q 045902 263 TVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMR 342 (1472)
Q Consensus 263 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 342 (1472)
||+||+.++...... . .++....+.+.... ....+++..||.+|. .+
T Consensus 91 ti~eNi~~~~~~~~~--~-------------------~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~-~g 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDYT--D-------------------EDLWQVLDLAFARS-----------FVENMPDQLNTEVGE-RG 137 (242)
T ss_dssp EHHHHTTSCTTSCSC--H-------------------HHHHHHHHHHTCTT-----------TTTSSTTGGGCEEST-TS
T ss_pred chhhheecccccccc--h-------------------hhHHHHHHHHHhhh-----------hhccCcccccccccC-CC
Confidence 999999775332110 0 01111111111100 112455667888884 56
Q ss_pred CCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCC
Q 045902 343 RGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEG 422 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G 422 (1472)
..|||||||||+|||||+.+|+||+||||||+||+.++.+|++.|+++.+ ++|+|++.|++. ....||+|++|++|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLS--TIVDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSHH--HHHHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCHH--HHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999863 789998887653 44679999999999
Q ss_pred eEEEecChhHHHH
Q 045902 423 EIVYQGPREYVLD 435 (1472)
Q Consensus 423 ~iv~~G~~~~~~~ 435 (1472)
+|+++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.4e-40 Score=366.50 Aligned_cols=210 Identities=22% Similarity=0.355 Sum_probs=169.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCC---CceEEEEcCCCCCCCC
Q 045902 185 KLEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVP---QRTCAYISQHDLHHGE 261 (1472)
Q Consensus 185 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 261 (1472)
+.++|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.++.
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~- 102 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN- 102 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-
T ss_pred CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccCC-
Confidence 356999999999999999999999999999999999999998 9999999999987654 357999999987774
Q ss_pred CCHHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCcc
Q 045902 262 MTVRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEM 341 (1472)
Q Consensus 262 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 341 (1472)
.|+++|+.++..... . ++++. +++...+ ....++. |++..||.+| +.
T Consensus 103 ~ti~~n~~~~~~~~~--~-------------------~~~i~---~a~~~~~------l~~~i~~--l~~gl~t~~~-~~ 149 (253)
T d3b60a1 103 DTVANNIAYARTEEY--S-------------------REQIE---EAARMAY------AMDFINK--MDNGLDTIIG-EN 149 (253)
T ss_dssp SBHHHHHHTTTTSCC--C-------------------HHHHH---HHHHTTT------CHHHHHH--STTGGGSBCC-TT
T ss_pred cchhhhhhhcCcccC--C-------------------HHHHH---HHHHHHh------HHHHHHh--ccccchhhhc-CC
Confidence 699999988531110 0 01111 1111111 0112222 4455688887 45
Q ss_pred CCCCChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 342 RRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
+..|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|++.|++. ..+.||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHHhCCEEEEEEC
Confidence 778999999999999999999999999999999999999999999999864 789888877653 4578999999999
Q ss_pred CeEEEecChhHHHH
Q 045902 422 GEIVYQGPREYVLD 435 (1472)
Q Consensus 422 G~iv~~G~~~~~~~ 435 (1472)
|+|+++|+++++++
T Consensus 226 G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 226 GIIVERGTHSELLA 239 (253)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.5e-41 Score=373.98 Aligned_cols=211 Identities=28% Similarity=0.444 Sum_probs=173.0
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
++++|++|.++ +.+.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEec
Confidence 56888887653 235699999999999999999999999999999999999874 5899999999875
Q ss_pred h---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHcccccc-------cccccCCCCCCCCCHHH
Q 045902 958 Q---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKAL-------RNSLVGLPGVDGLSTEQ 1027 (1472)
Q Consensus 958 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~-------~~~~~~~~~~~~LSgGq 1027 (1472)
. ..+++.+|||+|++.+++. |++||+.+..... ..+....++++..++... .++.++.. ...|||||
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~LSGGq 144 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGD-YTDEDLWQVLDLAFARSFVENMPDQLNTEVGER-GVKISGGQ 144 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSC-SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-SBCCCHHH
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccccc-cchhhHHHHHHHHHhhhhhccCcccccccccCC-CCCCCHHH
Confidence 4 4567889999999988876 9999997643221 223445555555544332 33444443 35799999
Q ss_pred HHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcC
Q 045902 1028 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGP 1107 (1472)
Q Consensus 1028 rqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~ 1107 (1472)
||||+|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||++||+++ ....||++++|++ |++++.|+
T Consensus 145 kQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G~iv~~G~ 220 (242)
T d1mv5a_ 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220 (242)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSC
T ss_pred HHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECC
Confidence 999999999999999999999999999999999999999997 5899999999975 5567999999985 89999998
Q ss_pred CC
Q 045902 1108 LG 1109 (1472)
Q Consensus 1108 ~~ 1109 (1472)
..
T Consensus 221 ~~ 222 (242)
T d1mv5a_ 221 HN 222 (242)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-40 Score=370.85 Aligned_cols=215 Identities=22% Similarity=0.300 Sum_probs=172.1
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.|+|++|.++. .++..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEECCC----------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CcCEEEECCEec
Confidence 4889999987642 1235699999999999999999999999999999999999874 599999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHc-------ccccccccccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELV-------EMKALRNSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l-------~l~~~~~~~~~~~~~~~LSgG 1026 (1472)
.. ..+++.++||+|++.+++ .||+||+.++..... ......+..+.. .+.+-.++.++.. ...||||
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~-~~~LSGG 155 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKP-TMEEITAAAVKSGAHSFISGLPQGYDTEVDEA-GSQLSGG 155 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSS-CSSSCHH
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhcccc-hHHHHHHHHHHHHHHHHHHhccccchhhHhcc-CccCChh
Confidence 43 456788999999998875 699999987533222 122222222221 1222234444432 3579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||+|||||+++|+||+||||||+||+.++..|++.|+++.++ |+|||++||+++ ..+.||+|++|++ |+++..
T Consensus 156 qkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G~iv~~ 232 (251)
T d1jj7a_ 156 QRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-GAIREG 232 (251)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-TEEEEE
T ss_pred HceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998754 899999999964 5678999999985 799999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 233 Gt~~ 236 (251)
T d1jj7a_ 233 GTHQ 236 (251)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9863
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6e-40 Score=366.46 Aligned_cols=213 Identities=27% Similarity=0.396 Sum_probs=176.2
Q ss_pred eEEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 045902 876 LSLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 955 (1472)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 955 (1472)
..+.++|++|.++. ....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc--cccccccCCEE
Confidence 35889999887631 235799999999999999999999999999999999998874 59999999998
Q ss_pred CCh---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCH
Q 045902 956 KKQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLST 1025 (1472)
Q Consensus 956 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSg 1025 (1472)
+.. ..+++.++||+|++.+++ .||+||+.|+. ....++.+.++++..++.+.. |+.++.. ...|||
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~--~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~-g~~LSg 157 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR--PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER-GVKLSG 157 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC--SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTSCH
T ss_pred cccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC--cCCCHHHHHHHHHHhCCHHHHHhccccccchhcCC-CCCcCH
Confidence 643 457788999999998775 69999998752 122345566677766664432 3344432 347999
Q ss_pred HHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEE
Q 045902 1026 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYA 1105 (1472)
Q Consensus 1026 GqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~ 1105 (1472)
|||||++|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||++||+++ ....||+|++|++ |+++..
T Consensus 158 Gq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~-G~iv~~ 233 (255)
T d2hyda1 158 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIEN-GHIVET 233 (255)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999864 899999999986 4578999999985 899999
Q ss_pred cCCC
Q 045902 1106 GPLG 1109 (1472)
Q Consensus 1106 g~~~ 1109 (1472)
|+..
T Consensus 234 G~~~ 237 (255)
T d2hyda1 234 GTHR 237 (255)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9863
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-39 Score=364.80 Aligned_cols=212 Identities=23% Similarity=0.310 Sum_probs=174.9
Q ss_pred EEEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 045902 877 SLAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 956 (1472)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 956 (1472)
.+.|+|++|.++. ....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC--CccEEEECCccc
Confidence 4889999887631 235699999999999999999999999999999999998874 589999999986
Q ss_pred Ch---hcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCCchHHHHHHHHHccccccc-------ccccCCCCCCCCCHH
Q 045902 957 KQ---ETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLPKDMFVEEVMELVEMKALR-------NSLVGLPGVDGLSTE 1026 (1472)
Q Consensus 957 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~-------~~~~~~~~~~~LSgG 1026 (1472)
.. ..+++.++||+|++.++. .|+++|+.+... ....++.++++++..++.++. ++.++.. +..||||
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~-~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~-~~~LSGG 156 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGG 156 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHH
T ss_pred chhhhhhhhheEEEEeeccccCC-cchhhhhhhcCc-ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCC-CCCcCHH
Confidence 43 456778999999998775 599999987522 222334556666665554432 3444432 4579999
Q ss_pred HHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEc
Q 045902 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAG 1106 (1472)
Q Consensus 1027 qrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g 1106 (1472)
|||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||++||+++ ..+.||+|++|++ |++++.|
T Consensus 157 qkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~-G~Iv~~G 232 (253)
T d3b60a1 157 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED-GIIVERG 232 (253)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999964 899999999976 4578999999985 8999999
Q ss_pred CC
Q 045902 1107 PL 1108 (1472)
Q Consensus 1107 ~~ 1108 (1472)
+.
T Consensus 233 ~~ 234 (253)
T d3b60a1 233 TH 234 (253)
T ss_dssp CH
T ss_pred CH
Confidence 86
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-37 Score=342.79 Aligned_cols=195 Identities=22% Similarity=0.355 Sum_probs=168.0
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeEEeccCCCCCCCCCH
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQ---ETFARISGYCEQNDIHSPNVTI 980 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 980 (1472)
.+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|+++.. ...+...+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccH
Confidence 46999999999999999999999999999999999753 37999999998643 2344567999999877777899
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhh-------CCCCccccCCCCCC
Q 045902 981 YESLLYSAWLRLPKDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGL 1053 (1472)
Q Consensus 981 ~e~l~~~~~l~~~~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~-------~p~il~LDEPTsgL 1053 (1472)
.+++.+...- ....+.++++++.+++.+..++.. ..|||||||||+||++|++ +|+||+|||||+||
T Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gL 163 (231)
T d1l7vc_ 90 WHYLTLHQHD-KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 163 (231)
T ss_dssp HHHHHHHCSC-TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTC
T ss_pred HHHhhhccch-hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCC
Confidence 9998775432 233466788999999888776654 4799999999999999997 77999999999999
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1054 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1054 D~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
|+.++..+++.|++++++|.|||+++|+++ ++.+.|||+++|++ |++++.|+..
T Consensus 164 D~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~ 217 (231)
T d1l7vc_ 164 DVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 217 (231)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHH
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999987 58899999999985 8999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-36 Score=345.55 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=158.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHH
Q 045902 186 LEILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVR 265 (1472)
Q Consensus 186 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 265 (1472)
++||+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++| .++|++|++.+++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccC-ceee
Confidence 47999999999999999999999999999999999999998 99999988 3899999998886 5999
Q ss_pred HHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCC
Q 045902 266 ETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGI 345 (1472)
Q Consensus 266 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gL 345 (1472)
||+.|+.... ..+ .....+.+. .......+.+..++.+| +.+..|
T Consensus 115 eni~~~~~~~----~~~-------------------~~~~~~~~~-----------~~~~i~~l~~~~~~~~~-~~~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD----EYR-------------------YKSVVKACQ-----------LQQDITKFAEQDNTVLG-EGGVTL 159 (281)
T ss_dssp HHHTTTSCCC----HHH-------------------HHHHHHHTT-----------CHHHHTTSTTGGGCEEC-TTCTTS
T ss_pred cccccccccc----chH-------------------HHHHHHHHH-----------hHHHHHhchhhhhhhhh-hhccCC
Confidence 9998864221 000 000011000 01123456666788887 456679
Q ss_pred ChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeEE
Q 045902 346 SGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEIV 425 (1472)
Q Consensus 346 SGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~iv 425 (1472)
||||||||+|||||+.+|+||+|||||+|||+.+..++++.+..... .++|+|++.|+. +..+.||+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKM--EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCH--HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechH--HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999876433222 468888877764 456889999999999999
Q ss_pred EecChhHHHH
Q 045902 426 YQGPREYVLD 435 (1472)
Q Consensus 426 ~~G~~~~~~~ 435 (1472)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.8e-36 Score=341.40 Aligned_cols=188 Identities=21% Similarity=0.357 Sum_probs=153.2
Q ss_pred cceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccCCCCCCCCCHH
Q 045902 902 RLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQNDIHSPNVTIY 981 (1472)
Q Consensus 902 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 981 (1472)
++++|+||||+|++||++||+||||||||||+++|+|..++ .+|.|.++| +++|++|++.+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC--CCcEEEECC----------EEEEEeccccccC-ceee
Confidence 45799999999999999999999999999999999999874 599999998 3799999998876 4999
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHcccc-------cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCC
Q 045902 982 ESLLYSAWLRLPKDMFVEEVMELVEMK-------ALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1054 (1472)
Q Consensus 982 e~l~~~~~l~~~~~~~~~~v~~~l~l~-------~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD 1054 (1472)
||+.|+.. ..+...+++++..++. +..++.++.. ..+|||||||||+|||||+++|+||+|||||||||
T Consensus 115 eni~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD 190 (281)
T d1r0wa_ 115 ENIIFGVS---YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 190 (281)
T ss_dssp HHHTTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSC
T ss_pred cccccccc---ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcCccccCC
Confidence 99987532 1233344444444332 2234444433 34799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCCC
Q 045902 1055 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPLG 1109 (1472)
Q Consensus 1055 ~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~~ 1109 (1472)
+.+...+++.+.+....|+|+|+++|++ +..+.||+|++|++ |++++.|+..
T Consensus 191 ~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 191 VFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999998876444445689999999996 45688999999985 7999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.3e-36 Score=322.57 Aligned_cols=193 Identities=18% Similarity=0.263 Sum_probs=157.2
Q ss_pred EEEeceeeEEeccchhhccccccccceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 045902 878 LAFDHVNYFVDMPAEMKSQGIEENRLQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKK 957 (1472)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 957 (1472)
+.++|+++.+ + +++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||+++.
T Consensus 3 lev~~ls~~y-------------~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~ 66 (200)
T d1sgwa_ 3 LEIRDLSVGY-------------D-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT 66 (200)
T ss_dssp EEEEEEEEES-------------S-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG
T ss_pred EEEEEEEEEe-------------C-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehh
Confidence 5677777653 2 369999999999999999999999999999999999887 45999999999875
Q ss_pred hhcccceeEEeccCCCCCCCCCHHHHHHHHHHcCCC--chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHH
Q 045902 958 QETFARISGYCEQNDIHSPNVTIYESLLYSAWLRLP--KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAV 1035 (1472)
Q Consensus 958 ~~~~~~~~gyv~Q~~~~~~~lTv~e~l~~~~~l~~~--~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~ 1035 (1472)
. .+..++|++|+..++..+|+.|++.+.+.++.. .+..+.+.++.+++.++.+. +..||||||||++|||
T Consensus 67 ~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~LSgG~~qrv~ia~ 138 (200)
T d1sgwa_ 67 K--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKK------LGELSQGTIRRVQLAS 138 (200)
T ss_dssp G--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSB------GGGSCHHHHHHHHHHH
T ss_pred H--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccc------cCcCCCcHHHHHHHHH
Confidence 3 456789999999999999999999887766532 23445566677766554432 2479999999999999
Q ss_pred HHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 045902 1036 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1098 (1472)
Q Consensus 1036 aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l~~ 1098 (1472)
+|+.+|++++|||||+|||+.++..+++.|+++.+++.++|+++|+. .+.||.+.+|.+
T Consensus 139 al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 139 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 99999999999999999999999999999999976644444444431 246999988864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-35 Score=329.33 Aligned_cols=198 Identities=24% Similarity=0.343 Sum_probs=167.4
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCC---ceEEEEcCCCCCCCCCC
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQ---RTCAYISQHDLHHGEMT 263 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 263 (1472)
..|+|||+.|++||+++|+||||||||||+++|+|..+ + +|+|.++|+++....++ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-C---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-C---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 36999999999999999999999999999999999764 4 79999999988765543 35799999987777789
Q ss_pred HHHHHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCC
Q 045902 264 VRETLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRR 343 (1472)
Q Consensus 264 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~ 343 (1472)
+.+++.+...-+. .....+.+++.++|++..+..+.+
T Consensus 89 v~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~---- 125 (231)
T d1l7vc_ 89 VWHYLTLHQHDKT---------------------------------------RTELLNDVAGALALDDKLGRSTNQ---- 125 (231)
T ss_dssp HHHHHHHHCSCTT---------------------------------------CHHHHHHHHHHTTCTTTTTSBGGG----
T ss_pred HHHHhhhccchhh---------------------------------------HHHHHHHHHHhcCCHhHhCcChhh----
Confidence 9999876432100 001235577889999888877664
Q ss_pred CCChHHHHHHHHHHHHhC-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeE
Q 045902 344 GISGGQKKRVTTGEMLVG-------PAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDI 416 (1472)
Q Consensus 344 gLSGGqrkRvsia~aL~~-------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~i 416 (1472)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.++++++ .|.|+|++.|+ ..++.+++|||
T Consensus 126 -LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~~dri 202 (231)
T d1l7vc_ 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRHAHRA 202 (231)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHHCSBC
T ss_pred -cCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHHCCEE
Confidence 99999999999999986 6799999999999999999999999999976 58888887655 56899999999
Q ss_pred EEecCCeEEEecChhHHH
Q 045902 417 ILLSEGEIVYQGPREYVL 434 (1472)
Q Consensus 417 ilL~~G~iv~~G~~~~~~ 434 (1472)
++|++|+++++|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998873
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.1e-34 Score=307.28 Aligned_cols=183 Identities=19% Similarity=0.273 Sum_probs=149.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCCCCHHH
Q 045902 187 EILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGEMTVRE 266 (1472)
Q Consensus 187 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 266 (1472)
+||+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+. ++.++|++|+..+...+|+.|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHHH
Confidence 6999999999999999999999999999999999999998 99999999998754 457999999999999999999
Q ss_pred HHHHhhhccCCCchhHHHHHhhHHHHhcCCCCChhHHHHHHHHHhccccccccHHHHHHHhCCcccccccccCccCCCCC
Q 045902 267 TLDFSGRCLGVGTRFELLAELSRREKDAGIKPDPEIDAFMKATAMSGLKTSLGTDYVLKILGLDICADIMVGNEMRRGIS 346 (1472)
Q Consensus 267 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~~gLS 346 (1472)
++.+.+...+.... .++ +...++.+++.+. +..++ .||
T Consensus 90 ~l~~~~~~~~~~~~---------------------~~~---------------~~~~l~~~~~~~~-~~~~~-----~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN---------------------KNE---------------IMDALESVEVLDL-KKKLG-----ELS 127 (200)
T ss_dssp HHHHHHHHTTCCCC---------------------HHH---------------HHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHhcCCccC---------------------HHH---------------HHHHHHHcCCccc-ccccC-----cCC
Confidence 99887655432110 000 1224555665442 33444 499
Q ss_pred hHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecC
Q 045902 347 GGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSE 421 (1472)
Q Consensus 347 GGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~ 421 (1472)
|||||||+||++|+.+|++++|||||+|||+.++.++++.|+++.+..+ ++|++.||.. ++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~-~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG-IVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS-EEEEEESSCC----TTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCC-EEEEEEechh----hhcchhhheee
Confidence 9999999999999999999999999999999999999999999987654 4555555542 57999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.30 E-value=6.2e-14 Score=147.15 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEEecCCeE
Q 045902 345 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIILLSEGEI 424 (1472)
Q Consensus 345 LSGGqrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iilL~~G~i 424 (1472)
+|+|+++|.++++++..+|+++++|||. .+......+.+.+.+..+..+.+++++.|+. +...++|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~--~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIG--KMELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCS--TTGGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEE
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCC--ccchhhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCEE
Confidence 7999999999999999999999999984 3344456667777776665678888877664 45568899999999999
Q ss_pred EEecC
Q 045902 425 VYQGP 429 (1472)
Q Consensus 425 v~~G~ 429 (1472)
+.-++
T Consensus 158 ~~v~~ 162 (178)
T d1ye8a1 158 IELTP 162 (178)
T ss_dssp EECCT
T ss_pred EEECC
Confidence 86543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=1.7e-13 Score=143.76 Aligned_cols=157 Identities=14% Similarity=0.027 Sum_probs=96.4
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeEEeccC--C--CCCCCCCHHHHHHHHHHcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKKQETFARISGYCEQN--D--IHSPNVTIYESLLYSAWLRLP 993 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~--~--~~~~~lTv~e~l~~~~~l~~~ 993 (1472)
.++|+||||||||||+++|+|..++ ..|.+...|.+...... ..++.... . ......+..+ +..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 69 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSSKFFTS--------KKL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCC--------SSE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhhhhhhh--------hhh
Confidence 4799999999999999999997763 47888888765322111 11221110 0 0000000000 000
Q ss_pred chHHHHHHHHHcccccccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhh-CC
Q 045902 994 KDMFVEEVMELVEMKALRNSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1072 (1472)
Q Consensus 994 ~~~~~~~v~~~l~l~~~~~~~~~~~~~~~LSgGqrqRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~-~g 1072 (1472)
. +-.+... ....+|+|+++|.++++++..+|++|++|||+...+ ....+.+.+.++.+ .+
T Consensus 70 ~-----------~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 70 V-----------GSYGVNV------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPN 130 (178)
T ss_dssp E-----------TTEEECH------HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTT
T ss_pred h-----------hhhhcCc------chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCC
Confidence 0 0000000 011478999999999999999999999999854433 33455566666544 48
Q ss_pred CEEEEEecCccHHHHHhhCeEEEEecCcEEEEEcCC
Q 045902 1073 RTVVCTIHQPSIDIFEAFDELFLMKRGGHVIYAGPL 1108 (1472)
Q Consensus 1073 ~tvi~t~H~~~~~~~~~~D~v~~l~~gg~v~~~g~~ 1108 (1472)
.|||+++|+.+ ....+|++..+. +|+++.-++.
T Consensus 131 ~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 131 VNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp SEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred CEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 99999999965 456788888886 4778766653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=4.5e-08 Score=110.95 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1021 DGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL~----~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
..+|+|||+.+.++..++ .+|+++++|||-++|||.....+.+.|++..+ +.-||+|||.|. +++.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEEE
Confidence 469999999988877653 45789999999999999999999999999864 578999999985 67889998664
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=2.8e-07 Score=104.17 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=62.7
Q ss_pred CCCCChHHHHHHHHHHH----HhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEE
Q 045902 342 RRGISGGQKKRVTTGEM----LVGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDII 417 (1472)
Q Consensus 342 ~~gLSGGqrkRvsia~a----L~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~ii 417 (1472)
...+|+|||+...++.. ...+++++++|||-++||+.....+.+.|++.++ +.-+|++.|.| ++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp--~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNK--IVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH--HHHHhcccEE
Confidence 45699999999887654 3457899999999999999999999999998864 45677776654 7889999986
Q ss_pred E--ecCC
Q 045902 418 L--LSEG 422 (1472)
Q Consensus 418 l--L~~G 422 (1472)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 5666
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=3.2e-07 Score=108.25 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCccHHHHHhhCeEEEE
Q 045902 1021 DGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1096 (1472)
Q Consensus 1021 ~~LSgGqrqRl~iA~aL----~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~~~~~~~~D~v~~l 1096 (1472)
..+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+|. +.+.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 45899999998887654 3567799999999999999999999999998765667999999974 78889998755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.88 E-value=8.3e-06 Score=95.72 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=60.3
Q ss_pred CCCChHHHHHHHHHHHH----hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCcchHHhccCeEEE
Q 045902 343 RGISGGQKKRVTTGEML----VGPAKALFMDEISTGLDSSTTFQIVRFMRQMVHITDVTMIISLLQPAPETYDLFDDIIL 418 (1472)
Q Consensus 343 ~gLSGGqrkRvsia~aL----~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~tvii~~~q~~~~~~~~fD~iil 418 (1472)
..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. .+.-+|++.|+| ++.+.+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCH--HHHHhcccEEE
Confidence 45899999998887433 467889999999999999999999999988754 345577777765 68899999875
Q ss_pred e
Q 045902 419 L 419 (1472)
Q Consensus 419 L 419 (1472)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.32 E-value=0.0003 Score=74.99 Aligned_cols=55 Identities=9% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCCccccCCCCCCCHHHHHHH-HHHHHHHhhCCCEEEEEecCcc
Q 045902 1029 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1029 qRl~iA~aL~~~p~il~LDEPTsgLD~~~~~~i-~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
+|+.-....+.+.+++++||+.+|=|+.....+ ...++.+.+.+..++++||..+
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 333333334456679999999999999776544 4456667777899999999843
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.00044 Score=74.19 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=34.8
Q ss_pred HhCCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEecC
Q 045902 359 LVGPAKALFMDEISTGLDSSTTFQIVRF-MRQMVHITDVTMIISLLQP 405 (1472)
Q Consensus 359 L~~~p~illLDEptsgLDs~t~~~i~~~-L~~l~~~~~~tvii~~~q~ 405 (1472)
-..+..++++||+.+|=|+.....+... ++.+....+..++++.|.+
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 3456679999999999999999888755 5566655555666666543
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.27 E-value=0.00038 Score=74.08 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecC
Q 045902 349 QKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVRFM-RQMVHITDVTMIISLLQP 405 (1472)
Q Consensus 349 qrkRvsia~aL~~~p~illLDEptsgLDs~t~~~i~~~L-~~l~~~~~~tvii~~~q~ 405 (1472)
|-+|++-.-..+++..++++||+.+|=|+.....+...+ ..+.+ .+..++++.|++
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~ 157 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeech
Confidence 333343333344666899999999999998887776443 44544 456677777654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00091 Score=71.64 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=36.5
Q ss_pred HhhCCCCccccCCCCCCCHHHHHHHH-HHHHHHhhC-CCEEEEEecCccH
Q 045902 1037 LVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPSI 1084 (1472)
Q Consensus 1037 L~~~p~il~LDEPTsgLD~~~~~~i~-~~l~~l~~~-g~tvi~t~H~~~~ 1084 (1472)
-+.+.+++++||+.+|=|+.....+. ..++.+... +..+|++||....
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 35556799999999999998877665 456677654 5789999997643
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.97 E-value=0.0003 Score=77.38 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=29.2
Q ss_pred eeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 904 QLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 904 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
+-|+++.+-++||+++.|.|++|+|||||+.-|+-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34666666689999999999999999999887763
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.48 E-value=0.013 Score=63.72 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=28.4
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
-|+++.+=+.||+++.|.|+||+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4566555589999999999999999999888774
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.39 E-value=0.00083 Score=70.98 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEE
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVT 234 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~ 234 (1472)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 47789999999999999999999875433 45554
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.39 E-value=0.015 Score=61.70 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=40.8
Q ss_pred CCCcEeEEeCCCCC---CCHHHHHHHHHHHHHHHHhCCcEEEEEEecC---------cchHHhccCeEEEec
Q 045902 361 GPAKALFMDEISTG---LDSSTTFQIVRFMRQMVHITDVTMIISLLQP---------APETYDLFDDIILLS 420 (1472)
Q Consensus 361 ~~p~illLDEptsg---LDs~t~~~i~~~L~~l~~~~~~tvii~~~q~---------~~~~~~~fD~iilL~ 420 (1472)
.+|++++.|..+.- .+.......+..|.++++..+.+++++.|.. ...+..++|-|+.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 47899999976554 4555555566666677777888887776542 223456789888874
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.16 E-value=0.0012 Score=66.41 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998763
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.00086 Score=67.25 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+++|.|+||||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0014 Score=69.29 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEE
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSIS 950 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~ 950 (1472)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence 478999999999999999999998543 2245554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0077 Score=65.39 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHhhCCCCccccCCCC---C--CCHHHHHHHHHHHHHHhhC-CCEEEEEecC
Q 045902 1036 ELVANPSIIFMDEPTS---G--LDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1081 (1472)
Q Consensus 1036 aL~~~p~il~LDEPTs---g--LD~~~~~~i~~~l~~l~~~-g~tvi~t~H~ 1081 (1472)
+-..+|+++++|--+. + -|......+++.|+++++. |+|||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457899999995542 1 2566667788888888754 8999999884
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0002 Score=74.00 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=27.8
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 189 LHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 189 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+++.++.+.+| +++|+|||||||||+|.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 46677777776 9999999999999999999743
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.017 Score=62.42 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=33.0
Q ss_pred HhCCCcEeEEeCCCC---C--CCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 045902 359 LVGPAKALFMDEIST---G--LDSSTTFQIVRFMRQMVHITDVTMIISLL 403 (1472)
Q Consensus 359 L~~~p~illLDEpts---g--LDs~t~~~i~~~L~~l~~~~~~tvii~~~ 403 (1472)
-..+++++++|-.++ + -|.....++++.|+.+++..+.++++..|
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H 178 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH 178 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhh
Confidence 346899999996653 2 25566677888888888877888777654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.00017 Score=74.51 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=28.2
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
-.++.++.+.+| +++|+|||||||||+|++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 356777888877 999999999999999999963
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.86 E-value=0.0017 Score=66.42 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
|+++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987664
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.77 E-value=0.00096 Score=70.72 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEE
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVT 234 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~ 234 (1472)
+|+.++++|+||+|||||+|+|.|...-. .|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 46788999999999999999999975432 45554
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.74 E-value=0.064 Score=55.82 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=26.6
Q ss_pred eeece-eeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 045902 188 ILHDV-SGIVKPSRMTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 188 iL~~v-s~~i~~Ge~~~ilGp~GsGKSTLL~~L~ 220 (1472)
-|+++ +|=+++|+++.|.|+||+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 35553 4569999999999999999999975443
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.73 E-value=0.0013 Score=66.23 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCe
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGH 238 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 238 (1472)
++++|+|++|||||||++.|...+......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 468999999999999999998876543222345544444
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.71 E-value=0.002 Score=65.98 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
|.++.|+||||||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999998654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0023 Score=64.21 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.+.++.|+|||||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999765
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0022 Score=64.01 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.56 E-value=0.0028 Score=63.77 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++|.++.|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999997653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.48 E-value=0.0031 Score=63.36 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999865
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.45 E-value=0.0029 Score=63.87 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.++|.||+|||||||.+.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.42 E-value=0.069 Score=55.57 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=26.6
Q ss_pred eeccc-eeEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 905 LLQDV-SGAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 905 iL~~v-s~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
-||++ .+-+++|+++.|.|++|+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 35554 3579999999999999999999975544
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.36 E-value=0.0037 Score=61.39 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G 221 (1472)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998864
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.30 E-value=0.0015 Score=69.09 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCCCCCeeEEEEE
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGSIS 950 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~ 950 (1472)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 477889999999999999999998533 2245554
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0034 Score=63.25 Aligned_cols=26 Identities=46% Similarity=0.704 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35789999999999999999987654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.12 E-value=0.0042 Score=63.99 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|++|+|||||+|.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999963
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.12 E-value=0.0046 Score=61.58 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.05 E-value=0.0051 Score=61.59 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+|-.++|.|||||||||+.+.|+-.+.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 456788999999999999999997653
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.005 Score=64.31 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999986544
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.00 E-value=0.0046 Score=61.70 Aligned_cols=22 Identities=59% Similarity=0.800 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|+|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.0049 Score=61.61 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.0066 Score=62.69 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=26.1
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
|=+.+|+++.|.||||||||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998887754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.78 E-value=0.0067 Score=60.64 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.+++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999998764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.76 E-value=0.0048 Score=61.82 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChhHHHhhhcCCCC-CCeeEEEEEEcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRKT-GGYIEGSISISG 953 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~G 953 (1472)
+++|+|++|||||||++.|...+. .|..-|.|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 689999999999999998876432 233345554444
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.006 Score=63.70 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.|.++.|+||||+|||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999987543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.64 E-value=0.0067 Score=60.79 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++|.++.|+|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.63 E-value=0.0074 Score=60.86 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++++|.|++||||||+.+.|+-++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999986553
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.62 E-value=0.0058 Score=62.98 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.+.++.|+|||||||||+-+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.026 Score=60.77 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
..-+.|.||+|+|||+|.+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 344679999999999999999964
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.57 E-value=0.0066 Score=62.42 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.+||+|++|||||||++.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.54 E-value=0.0081 Score=61.68 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.+++|+|||||||||+-+.|+-.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.48 E-value=0.0077 Score=63.88 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+++|+||+|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 5899999999999999999753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.47 E-value=0.0073 Score=61.20 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|+||+|||||+|+|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999963
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.45 E-value=0.0087 Score=60.07 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.42 E-value=0.019 Score=61.46 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.+.||+|+|||+|.++|++.
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 689999999999999999964
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.38 E-value=0.0069 Score=60.94 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..++|.||+|+|||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.38 E-value=0.0059 Score=62.20 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|+|++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999874
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.37 E-value=0.0086 Score=59.82 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++|-.++|.||+||||||+.+.|+-..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.36 E-value=0.0094 Score=60.99 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+|-.++|+|||||||||+-+.|+-.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 5667789999999999999999954
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.0085 Score=58.82 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+.|+|||||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36678999999999999999765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.0068 Score=61.90 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.|-++.|.|+|||||||+-+.|+-++
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.22 E-value=0.0096 Score=58.20 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhHHHhhhcC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g 938 (1472)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.011 Score=60.67 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+++|+|||||||||+-+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.08 E-value=0.01 Score=60.01 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.07 E-value=0.072 Score=56.07 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=25.4
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
+-+++|.++.|.|++|+|||||..-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5699999999999999999999977764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.06 E-value=0.0079 Score=61.20 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.013 Score=57.90 Aligned_cols=23 Identities=39% Similarity=0.801 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
-++|+|++|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.01 E-value=0.0095 Score=61.61 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|+||||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999975
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.99 E-value=0.0093 Score=63.18 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.012 Score=60.15 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.89 E-value=0.01 Score=64.02 Aligned_cols=26 Identities=42% Similarity=0.555 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
..+++.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 45889999999999999999997653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.89 E-value=0.0078 Score=67.26 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=28.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALSGKSDKS 226 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~ 226 (1472)
...++.|.-++|.||.||||||||++|.+..++.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 3345666778999999999999999999998775
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.88 E-value=0.012 Score=59.61 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|++|+|||||+++|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999985
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.014 Score=58.79 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|.+|+|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.85 E-value=0.011 Score=60.33 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.|+|||||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.83 E-value=0.011 Score=59.72 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.82 E-value=0.0093 Score=60.41 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.82 E-value=0.01 Score=59.66 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|++|+|||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999854
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.79 E-value=0.014 Score=58.91 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
+-+++.++|+|||||||+.+.|+-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.76 E-value=0.013 Score=59.64 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++|-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998544
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.74 E-value=0.015 Score=58.78 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|++|+|||||++.|+|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.74 E-value=0.011 Score=57.96 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++.|++.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999863
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.69 E-value=0.014 Score=57.93 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.68 E-value=0.042 Score=59.34 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.+..-+.|.||+|+|||+|.++|++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 334447799999999999999999754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.67 E-value=0.014 Score=58.12 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
..++.|.|++||||||+.+.|+....
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999998653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.015 Score=57.49 Aligned_cols=25 Identities=40% Similarity=0.769 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
|=.++|+|++|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999999854
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.64 E-value=0.014 Score=58.48 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.014 Score=59.65 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.60 E-value=0.015 Score=58.98 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=0.012 Score=57.65 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999999975
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.013 Score=58.73 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.+.|.||+|+|||||++.++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.55 E-value=0.015 Score=57.93 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.|+|+|||||||+-+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999765
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.017 Score=58.77 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+.+.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4688999999999999999986543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.52 E-value=0.014 Score=58.10 Aligned_cols=22 Identities=45% Similarity=0.598 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHhhhcCCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.|+||+||||||+.+.|+-+.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.018 Score=60.69 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=25.1
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
|=+++|+++.|.||||||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5589999999999999999999887764
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.017 Score=58.00 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.015 Score=59.53 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHhhhcCCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.012 Score=59.33 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|++++|||||+|+|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.29 E-value=0.015 Score=59.12 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++||-||+|||||||.+.|+-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.26 E-value=0.015 Score=57.43 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.24 E-value=0.018 Score=57.14 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|+|++|||||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999999854
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.018 Score=58.56 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999988543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.23 E-value=0.016 Score=58.22 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999884
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.16 E-value=0.018 Score=58.17 Aligned_cols=22 Identities=55% Similarity=0.809 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.15 E-value=0.013 Score=59.19 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+||+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.019 Score=57.97 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|||||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999854
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.019 Score=58.17 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998643
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.11 E-value=0.019 Score=58.17 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++.||||||+++|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.11 E-value=0.019 Score=58.90 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.|+||||||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.05 E-value=0.019 Score=57.58 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHhhhcCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.04 E-value=0.021 Score=58.90 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++++|.||||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999644
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.04 E-value=0.02 Score=58.73 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.02 E-value=0.021 Score=57.64 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.99 E-value=0.021 Score=57.89 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.+||+|++|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.018 Score=57.98 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999854
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.93 E-value=0.021 Score=57.21 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.|+|+|||||||+-+.||-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.019 Score=59.00 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=25.7
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
+-+.+|+++.|.||+|+|||||...++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999999887775
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.86 E-value=0.017 Score=59.50 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.85 E-value=0.02 Score=56.03 Aligned_cols=23 Identities=43% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.76 E-value=0.02 Score=58.66 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.|+||||||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.75 E-value=0.025 Score=57.03 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999997764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.74 E-value=0.019 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999843
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.73 E-value=0.023 Score=56.60 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.++|++||||||+-+.|+-++
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4566999999999999999765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.66 E-value=0.024 Score=56.73 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999985
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.015 Score=59.22 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.|-++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.56 E-value=0.031 Score=59.24 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=23.4
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~ 220 (1472)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999976443
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.49 E-value=0.025 Score=60.93 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.49 E-value=0.023 Score=58.79 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.48 E-value=0.026 Score=57.66 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHhhhcC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++.|+||+||||||+-+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.44 E-value=0.033 Score=58.61 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=27.3
Q ss_pred eec-eeeEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 189 LHD-VSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 189 L~~-vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
|++ +.|=+++|+++.|.|+||+|||||..-++-
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444 345699999999999999999999877764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.098 Score=56.23 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=25.6
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
+-+++|.++-|.||+|+|||||+-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 7899999999999999999999877765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.028 Score=58.39 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++|.|||||||||+-+.|+-++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.36 E-value=0.023 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.|+|++|+|||||++.|++.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999863
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.17 E-value=0.0091 Score=58.99 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||+++|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.031 Score=62.23 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.-.++|.||||||||||++.|...+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.98 E-value=0.033 Score=57.98 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|-|||||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999765
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.90 E-value=0.03 Score=55.57 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHhhhcCCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.|+|++||||||+-+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.87 E-value=0.028 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999875
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.037 Score=57.44 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++|-|++|||||||-+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.74 E-value=0.031 Score=56.47 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+||+|+..||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.70 E-value=0.038 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999984
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.65 E-value=0.038 Score=56.23 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
++|-.+.|+||+||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3677888999999999999999994
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.036 Score=57.56 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++||-|++||||||+-+.|+-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.043 Score=58.00 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=25.0
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 045902 193 SGIVKPSRMTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 193 s~~i~~Ge~~~ilGp~GsGKSTLL~~L~ 220 (1472)
.|=+++|+++.|.||||||||||..-++
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred cCCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999999987776
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.58 E-value=0.037 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
-.++.|+||+||||||+-+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.53 E-value=0.041 Score=58.47 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.+++.||||+||||+.++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999998653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.33 E-value=0.25 Score=56.36 Aligned_cols=29 Identities=38% Similarity=0.572 Sum_probs=25.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
.|+-+++|.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 46779999999999999999999886543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.27 E-value=0.041 Score=55.00 Aligned_cols=21 Identities=52% Similarity=0.751 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++++|++|+|||||++.|.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999774
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.23 E-value=0.042 Score=58.00 Aligned_cols=24 Identities=46% Similarity=0.771 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
+++.||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 689999999999999999986543
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.22 E-value=0.04 Score=60.98 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+.-++++||||+|||+|.|+||..+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc
Confidence 34456889999999999999998653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.21 E-value=0.043 Score=57.67 Aligned_cols=22 Identities=50% Similarity=0.717 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|.||||+||||+.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.17 E-value=0.033 Score=56.99 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.+.++.|+||+||||||+-+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.13 E-value=0.047 Score=54.87 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.4
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
++-+++.++|++||||||+.+-|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3447999999999999999998863
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.12 E-value=0.039 Score=59.32 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.05 E-value=0.039 Score=56.10 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.045 Score=60.26 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCCCCCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQHDLHHGE 261 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 261 (1472)
+++|-|++||||||+-+.|.-.+... .....+..+++++.|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECCc
Confidence 78999999999999998887665321 011246778888887763
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.98 E-value=0.04 Score=54.55 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999988653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.95 E-value=0.016 Score=57.20 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.94 E-value=0.04 Score=58.25 Aligned_cols=23 Identities=48% Similarity=0.806 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+++.||||+||||+.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.90 E-value=0.056 Score=56.10 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=29.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHEL 240 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 240 (1472)
++|-++.+.|.||||||||-+.|.-.+.... -.-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchHH
Confidence 4677899999999999999999985442110 012455666543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=90.83 E-value=0.04 Score=61.28 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.4
Q ss_pred ceeEEeCCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 909 VSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 909 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
+...++.|.-+.|.|+.||||||||++|++..+
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 344556777799999999999999999998655
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.81 E-value=0.046 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHhhhcCCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.|+|++||||||+-+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.77 E-value=0.048 Score=54.77 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++.|.|++||||||+.+.|+.++
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999998754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.049 Score=55.44 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++.|+||+||||||.-+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999853
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.73 E-value=0.059 Score=59.86 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.-.++|.||||||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.057 Score=57.95 Aligned_cols=27 Identities=41% Similarity=0.821 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+..-+++.||||+|||++.++|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 445678999999999999999997653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.70 E-value=0.051 Score=54.53 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999853
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.70 E-value=0.05 Score=62.41 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.057 Score=56.06 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+.|.+++|-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999987553
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.59 E-value=0.055 Score=57.72 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++.++|.||+|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887543
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.57 E-value=0.057 Score=57.63 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.-+++.||||+|||+|.++|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 457899999999999999999754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.57 E-value=0.05 Score=54.01 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHhhhcCCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.|+|++||||||+-+.|+.++
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.55 E-value=0.22 Score=53.45 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=26.2
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+-++.|.++-|-||+|+|||||...++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 68999999999999999999999887763
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.47 E-value=0.049 Score=57.30 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3899999999999999999874
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.41 E-value=0.043 Score=56.55 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.35 E-value=0.055 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.33 E-value=0.056 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHhhhcCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+++++|.+|+|||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999963
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.30 E-value=0.06 Score=54.68 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 045902 201 MTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~ 220 (1472)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999996
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.29 E-value=0.05 Score=54.15 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998874
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.25 E-value=0.051 Score=54.21 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.18 E-value=0.045 Score=59.12 Aligned_cols=29 Identities=41% Similarity=0.797 Sum_probs=24.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+++..-++|.||||+|||+|.++|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 33455588999999999999999998763
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.07 Score=55.14 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
.|.+++|-|+.||||||+.+.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.04 E-value=0.066 Score=55.42 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.+++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999998777753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.99 E-value=0.07 Score=56.78 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999977643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.93 E-value=0.074 Score=55.01 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+.+++++||+|+||||.+-=|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999987777644
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.054 Score=53.67 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.91 E-value=0.055 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
...+.|.||+|+|||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999998553
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.88 E-value=0.065 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.|+||+||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999964
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.87 E-value=0.062 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999997653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.87 E-value=0.064 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
++||.||+||||||+-+.|+-..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999643
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.80 E-value=0.075 Score=55.63 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.1
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
+-+++|+++.|.||+|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999999977664
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.80 E-value=0.059 Score=59.94 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.1
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
...-.+||.||+|||||||++.|..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHH
Confidence 3466899999999999999999985
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.059 Score=53.92 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.71 E-value=0.071 Score=52.64 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997763
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.71 E-value=0.06 Score=56.54 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
.+.+++|-|+-||||||+++.|+..+..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3678999999999999999999987753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.075 Score=53.62 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.39 E-value=0.081 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.36 E-value=0.075 Score=55.68 Aligned_cols=22 Identities=45% Similarity=0.831 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+.+-||||+||||+.++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999754
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.25 E-value=0.073 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.|+||+||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999853
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.24 E-value=0.082 Score=56.34 Aligned_cols=22 Identities=55% Similarity=1.025 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++.||||+|||+|.++|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999765
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.16 E-value=0.18 Score=50.48 Aligned_cols=33 Identities=30% Similarity=0.229 Sum_probs=26.5
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.||.....+ .|.=++|.|+||+|||||...|.-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455444444 899999999999999999988875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.16 E-value=0.068 Score=52.78 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999988763
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.12 E-value=0.097 Score=52.17 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.11 E-value=0.082 Score=52.65 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++++|++|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.088 Score=52.23 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998776
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.07 Score=53.24 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.09 E-value=0.068 Score=52.86 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++++|++|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.01 E-value=0.081 Score=61.25 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCCceeEEEEcCeeCCCCCCCceEEEEcCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSDKSLRVSGRVTYCGHELTEFVPQRTCAYISQH 255 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 255 (1472)
=++++||+|||||-|.+.||+.++- --+..++...++ +|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fTe------aGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFTE------VGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeecceeee------cceeecc
Confidence 4679999999999999999997753 235555544433 7898875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.95 E-value=0.11 Score=51.57 Aligned_cols=22 Identities=45% Similarity=0.833 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999999864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.92 E-value=0.066 Score=53.84 Aligned_cols=21 Identities=48% Similarity=0.626 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++++|++|+|||||++.|.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999998653
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.89 E-value=0.084 Score=54.74 Aligned_cols=26 Identities=42% Similarity=0.507 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.|-+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.87 E-value=0.072 Score=61.03 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
-+||+|.+|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999954
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.86 E-value=0.081 Score=53.65 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHhhhc
Q 045902 918 LTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~ 937 (1472)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.84 E-value=0.086 Score=52.93 Aligned_cols=22 Identities=41% Similarity=0.444 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.|+||+||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999854
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.83 E-value=0.082 Score=54.89 Aligned_cols=25 Identities=44% Similarity=0.583 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+-.+++++||+|+||||.+-=||-+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999998777753
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.82 E-value=0.082 Score=55.33 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=25.6
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 910 SGAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 910 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
.+-+++|+++.|.|++|+|||||..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35699999999999999999999877764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.72 E-value=0.095 Score=56.17 Aligned_cols=24 Identities=42% Similarity=0.783 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
=+++.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 368999999999999999998653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.71 E-value=0.076 Score=52.82 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.70 E-value=0.074 Score=55.86 Aligned_cols=26 Identities=35% Similarity=0.613 Sum_probs=21.8
Q ss_pred EeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 913 FRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 913 i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+++. ++||||+..||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEeCCCccHHHHHHHHHhh
Confidence 3433 4999999999999999999873
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.56 E-value=0.11 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
++|+|...+|||||+++|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 68999999999999999998643
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.56 E-value=0.087 Score=58.42 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCC-CCCeeEEEEEEc
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRK-TGGYIEGSISIS 952 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~-~~~~~~G~i~i~ 952 (1472)
..-.+||.||.|||||||++.|.... ..+..-|-|.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecc
Confidence 35689999999999999999998632 122334555554
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.078 Score=52.46 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.082 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.53 E-value=0.11 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 199 SRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 199 Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
..+++++||+|+||||.+--||-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998888654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.52 E-value=0.091 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+++|.||+||||||+-+.|+...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.44 E-value=0.095 Score=52.07 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|++|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999885
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.43 E-value=0.082 Score=52.51 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHhhhcC
Q 045902 919 TALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g 938 (1472)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.34 E-value=0.086 Score=53.11 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998774
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.25 E-value=0.081 Score=52.69 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++++|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5699999999999999998643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.22 E-value=0.1 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.|+||+||||||+-+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999964
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.16 E-value=0.13 Score=55.32 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=25.8
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
|=+++|++|.|.||||||||||+-.++-.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 67899999999999999999998777654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.2 Score=50.23 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=0.13 Score=51.09 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.08 E-value=0.12 Score=53.51 Aligned_cols=24 Identities=46% Similarity=0.414 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
..+++++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999888754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.06 E-value=0.13 Score=50.51 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 196 VKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 196 i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+||.++++-|+=|||||||.+.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999998544
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=88.06 E-value=0.11 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 914 RPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 914 ~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.|-++-|.|.||||||||-+.|.-+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999999853
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.091 Score=52.58 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.01 E-value=0.092 Score=51.89 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.00 E-value=0.089 Score=52.35 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998763
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.00 E-value=0.11 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 916 GVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 916 Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
+.+++|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.00 E-value=0.11 Score=52.31 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.|+||.||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999854
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.98 E-value=0.085 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998763
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.95 E-value=0.11 Score=54.23 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++-||||+||||+.++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.86 E-value=0.048 Score=60.85 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
.-++|.||||+|||||.+.|++.+++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35799999999999999999998865
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.85 E-value=0.13 Score=54.23 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=23.9
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
+-+++|+++.|.||+|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 469999999999999999999976554
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.84 E-value=0.092 Score=51.68 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.79 E-value=0.077 Score=52.91 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=8.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.74 E-value=0.082 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
++.|.||||+||||++++++-.+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.73 E-value=0.11 Score=54.11 Aligned_cols=22 Identities=45% Similarity=0.822 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++-||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6789999999999999999754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.62 E-value=0.096 Score=52.15 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.11 Score=53.83 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHhhhcCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+++++||+|+||||.+-=||-+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999998878754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.60 E-value=0.21 Score=50.04 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=26.6
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.|| -+...-.|.=+++.|+||+|||||...|..+
T Consensus 4 ~lH-~~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMH-GVLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEE-EEEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEE-EEEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 344 3445668889999999999999998887753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.53 E-value=0.081 Score=57.38 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 8999999999999999998754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.52 E-value=0.12 Score=50.89 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++++|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998774
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.51 E-value=0.12 Score=53.66 Aligned_cols=25 Identities=40% Similarity=0.381 Sum_probs=16.7
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
...+++++||+|+||||.+-=||-+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999998777753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.44 E-value=0.099 Score=53.24 Aligned_cols=20 Identities=45% Similarity=0.702 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|++|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998774
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.41 E-value=0.11 Score=52.25 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++++|++|+|||||++.|.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.38 E-value=0.13 Score=50.58 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998874
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.27 E-value=0.14 Score=50.28 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=24.6
Q ss_pred EEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 912 AFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 912 ~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
..+||.+++|-|+=||||||+.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 347999999999999999999999985
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.26 E-value=0.11 Score=51.96 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++++|++|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.09 E-value=0.14 Score=52.75 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 045902 201 MTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~ 220 (1472)
+++|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999996
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.08 E-value=0.13 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.03 E-value=0.098 Score=52.04 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.88 E-value=0.13 Score=56.74 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|.|-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999985
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.83 E-value=0.12 Score=51.05 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.82 E-value=0.23 Score=49.67 Aligned_cols=34 Identities=29% Similarity=0.248 Sum_probs=26.8
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++.....+ .|.=+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 455555555 7888999999999999999888754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=86.76 E-value=0.14 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+-.+++++||+|+||||.+--||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 33578999999999999987777543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.72 E-value=0.12 Score=54.62 Aligned_cols=21 Identities=48% Similarity=0.626 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|.||+|+||||+.++++-.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999864
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.67 E-value=0.15 Score=50.37 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999999874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=0.15 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.++|+|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998853
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.57 E-value=0.15 Score=52.72 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=17.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.-.+++++||+|+||||.+-=||-.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999988887544
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.55 E-value=0.14 Score=50.53 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.40 E-value=0.14 Score=52.63 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.|.+++|-|+.||||||+.+.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998643
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.37 E-value=0.16 Score=52.29 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
+++|.|++||||||..+.|.-
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 679999999999999999963
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.33 E-value=0.12 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999875
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=86.27 E-value=0.14 Score=56.26 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
=++||-|++||||||+-+.|....
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHH
Confidence 389999999999999988887543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.25 E-value=0.15 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999988753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.20 E-value=0.26 Score=48.99 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=27.0
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 188 ILHDVSGIVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 188 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
-|+. ++..-.|.=++|.|+||+|||||.-.|.-+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3444 556678999999999999999998777643
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.19 E-value=0.13 Score=53.93 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.7
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhc
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~ 937 (1472)
+-+++|+++.|.||+|+|||||...++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999987776
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.18 E-value=0.14 Score=50.77 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 045902 202 TLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998853
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.15 E-value=0.14 Score=53.45 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.11 E-value=0.16 Score=50.56 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.13 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++++|++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.96 E-value=0.14 Score=50.66 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++|+|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999997664
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.94 E-value=0.15 Score=54.03 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+..+.|.||.|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568999999999999999988753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.92 E-value=0.18 Score=52.28 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKSDK 225 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~~~ 225 (1472)
.|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5899999999999999999999977654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.89 E-value=0.19 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999974
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=85.84 E-value=0.17 Score=52.29 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.+++++||+|+||||.+-=||-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999988888654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.78 E-value=0.17 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.70 E-value=0.18 Score=51.46 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+++|-|..||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 468889999999999999997654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.70 E-value=0.17 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.67 E-value=0.14 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5799999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.61 E-value=0.16 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999886
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.59 E-value=0.15 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
.-+.++||+|+|||+|.++|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 455689999999999999999743
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.55 E-value=0.15 Score=50.46 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997643
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.53 E-value=0.14 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999974
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=85.50 E-value=0.17 Score=51.89 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHhhhc
Q 045902 918 LTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~ 937 (1472)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.49 E-value=0.16 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++++|++|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4799999999999999988764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.42 E-value=0.14 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.38 E-value=0.18 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999999884
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.29 E-value=0.15 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.29 E-value=0.15 Score=51.15 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.23 E-value=0.19 Score=49.87 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=85.18 E-value=0.16 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.++|++|+|||||++.+.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5779999999999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.13 E-value=0.19 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|.-+||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.05 E-value=0.2 Score=49.67 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHhhhcC
Q 045902 919 TALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g 938 (1472)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.02 E-value=0.2 Score=49.59 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.93 E-value=0.11 Score=56.14 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
+++|-|+|||||||+.+.|.-.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78999999999999999987654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.93 E-value=0.19 Score=52.08 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHhhhcCCCC
Q 045902 915 PGVLTALVGVSGAGKTTLMDVLAGRKT 941 (1472)
Q Consensus 915 ~Ge~~al~G~nGaGKTTLl~~L~g~~~ 941 (1472)
.|.+++|=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999999999999986543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.86 E-value=0.2 Score=49.14 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHhhhcC
Q 045902 919 TALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g 938 (1472)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.84 E-value=0.17 Score=50.07 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998775
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.66 E-value=0.17 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.60 E-value=0.35 Score=48.23 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++++|.+|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999997766
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.55 E-value=0.16 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.54 E-value=0.22 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
+++|-|++|||||||-+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.48 E-value=0.19 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHhhhcCCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcc
Confidence 6799999999999999999643
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.36 E-value=0.18 Score=56.77 Aligned_cols=28 Identities=43% Similarity=0.438 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 197 KPSRMTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 197 ~~Ge~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
+++..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667899999999999999999998763
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.32 E-value=0.21 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.22 E-value=0.16 Score=50.45 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=9.0
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998876
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.18 E-value=0.21 Score=50.77 Aligned_cols=22 Identities=41% Similarity=0.509 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHhhhcCCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+||+|.-.||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999843
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.64 E-value=0.24 Score=49.83 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=83.53 E-value=0.37 Score=48.08 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=25.1
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.|++.-. .-.|.=+.|.|+||+|||||...|..+
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3443333 345778999999999999998887754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=83.51 E-value=0.24 Score=50.95 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.51 E-value=0.22 Score=50.41 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHhhhcC
Q 045902 919 TALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g 938 (1472)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998775
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.50 E-value=0.23 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999998763
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.48 E-value=0.19 Score=49.80 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHhhhcC
Q 045902 919 TALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g 938 (1472)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.48 E-value=0.2 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.46 E-value=0.24 Score=49.96 Aligned_cols=20 Identities=45% Similarity=0.673 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 045902 201 MTLLLGPPGSGKTTLLQALS 220 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~ 220 (1472)
.++|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999999984
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.46 E-value=0.25 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 488999999999999999999964
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.33 E-value=0.19 Score=52.72 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHhhhcCCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+.+.||+|.|||||.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999743
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.30 E-value=0.26 Score=48.49 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|.+|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.29 E-value=0.33 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
.++++|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.29 E-value=0.25 Score=50.73 Aligned_cols=20 Identities=40% Similarity=0.366 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++|+|+.+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 78999999999999999964
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.16 E-value=0.23 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHhhhcCC
Q 045902 919 TALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 919 ~al~G~nGaGKTTLl~~L~g~ 939 (1472)
+.|-||+|+|||||.++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999964
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.11 E-value=0.25 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
.++|+|.-+||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.03 E-value=0.26 Score=50.28 Aligned_cols=23 Identities=52% Similarity=0.764 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHhhhcCCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
+++|-|+-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.87 E-value=0.23 Score=49.05 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=82.76 E-value=0.27 Score=56.05 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=34.8
Q ss_pred HHHHHHhhCCCCccccCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCcc
Q 045902 1032 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1083 (1472)
Q Consensus 1032 ~iA~aL~~~p~il~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~H~~~ 1083 (1472)
.+..+|=.+|++++..|.. |+.++...+ +.+.+|.-|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 3556677899999999987 666665543 45668999999999765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.67 E-value=0.27 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988763
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.62 E-value=0.26 Score=48.89 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998775
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=82.40 E-value=0.26 Score=54.08 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
|.-.+++.||||+|||.|-++|++..
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHh
Confidence 44467778999999999999999875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.35 E-value=0.32 Score=53.48 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 198 PSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 198 ~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
|...++++||+|+|||.|.+.||-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44457899999999999999999754
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.29 E-value=0.29 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.++|+|++|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998863
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.18 E-value=0.3 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999884
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=82.17 E-value=0.31 Score=52.60 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=24.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhCC
Q 045902 195 IVKPSRMTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 195 ~i~~Ge~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
-+-.|+..+|+|++|+|||||+..|+..
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999999863
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.08 E-value=0.29 Score=48.88 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 045902 202 TLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 202 ~~ilGp~GsGKSTLL~~L~G 221 (1472)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.96 E-value=0.29 Score=49.31 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 045902 201 MTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G 221 (1472)
.++|+|++|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.93 E-value=0.31 Score=48.08 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.84 E-value=0.3 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CCCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALS-GKSDKS 226 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~-G~~~~~ 226 (1472)
.++|||.+|+|||||++-+. +...|+
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pT 34 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLT 34 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence 46899999999999999874 333344
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.84 E-value=0.28 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
-+.|.||+|+|||+|.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4689999999999999999964
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.76 E-value=0.31 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHhhhcCCC
Q 045902 917 VLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 917 e~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+.|.||+|.||||+++.|+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999754
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=81.73 E-value=0.46 Score=47.12 Aligned_cols=34 Identities=29% Similarity=0.172 Sum_probs=25.5
Q ss_pred eeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCC
Q 045902 905 LLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 905 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.|+. ++-.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3444 344456888999999999999998776643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=81.69 E-value=0.32 Score=47.98 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.61 E-value=0.35 Score=52.12 Aligned_cols=35 Identities=40% Similarity=0.712 Sum_probs=27.8
Q ss_pred ceeeccceeEEeCCeEEEEEcCCCCChhHHHhhhcCCC
Q 045902 903 LQLLQDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 940 (1472)
Q Consensus 903 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 940 (1472)
..+|+.++--| .+++|+||-++|||||||.|.|..
T Consensus 22 l~~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 22 LKILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 34566665433 589999999999999999999964
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.56 E-value=0.34 Score=51.93 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.3
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSG 221 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G 221 (1472)
+=++.|+++.+.||+|||||||+..++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 5688999999999999999999766654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.42 E-value=0.32 Score=52.57 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 889999999999999987754
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.40 E-value=0.33 Score=48.91 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHhhhc
Q 045902 918 LTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~ 937 (1472)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999984
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.37 E-value=0.28 Score=51.03 Aligned_cols=22 Identities=50% Similarity=0.679 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGK 222 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~ 222 (1472)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.16 E-value=0.28 Score=48.41 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.+.++|.+|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998875
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=81.03 E-value=0.31 Score=52.52 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=25.7
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcC
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g 938 (1472)
+.|-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4678899999999999999999999885
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.80 E-value=0.49 Score=50.54 Aligned_cols=25 Identities=52% Similarity=0.792 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH---hCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQAL---SGKSD 224 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L---~G~~~ 224 (1472)
+-++|+|+.|||||||..+| +|..+
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~ 30 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKE 30 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSS
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCch
Confidence 34799999999999999999 55443
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=0.33 Score=48.67 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHhhhcC
Q 045902 918 LTALVGVSGAGKTTLMDVLAG 938 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g 938 (1472)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999998775
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.55 E-value=0.31 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHhhhcCC
Q 045902 918 LTALVGVSGAGKTTLMDVLAGR 939 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~g~ 939 (1472)
.+||+|-+-+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 3799999999999999999984
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.45 E-value=0.52 Score=48.12 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 045902 201 MTLLLGPPGSGKTTLLQALSGKSD 224 (1472)
Q Consensus 201 ~~~ilGp~GsGKSTLL~~L~G~~~ 224 (1472)
-++|+|...+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.39 E-value=0.44 Score=51.02 Aligned_cols=30 Identities=37% Similarity=0.574 Sum_probs=26.7
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 045902 194 GIVKPSRMTLLLGPPGSGKTTLLQALSGKS 223 (1472)
Q Consensus 194 ~~i~~Ge~~~ilGp~GsGKSTLL~~L~G~~ 223 (1472)
|=++.|++|-|-||+|||||||...++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 678999999999999999999998887643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.28 E-value=0.37 Score=49.93 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHhhhc
Q 045902 918 LTALVGVSGAGKTTLMDVLA 937 (1472)
Q Consensus 918 ~~al~G~nGaGKTTLl~~L~ 937 (1472)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999875
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.25 E-value=0.48 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH---hCCCCC
Q 045902 200 RMTLLLGPPGSGKTTLLQAL---SGKSDK 225 (1472)
Q Consensus 200 e~~~ilGp~GsGKSTLL~~L---~G~~~~ 225 (1472)
+-++|+|+.|||||||..+| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 35799999999999999998 566554
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.09 E-value=0.27 Score=52.72 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=34.9
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHhhhcCC-CCCCeeEEEEEEcCccCChhcccceeE
Q 045902 911 GAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGYIEGSISISGYPKKQETFARISG 966 (1472)
Q Consensus 911 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~-~~~~~~~G~i~i~G~~~~~~~~~~~~g 966 (1472)
+-++.|.++-|.||+|+|||||+-.++.. ...+ .--|.||....-...+.+.+|
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g--~~~vyIDtE~~~~~e~a~~~G 109 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEHALDPDYAKKLG 109 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTT--CEEEEEESSCCCCHHHHHHHT
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCC--CEEEEEECCccCCHHHHHHhC
Confidence 57899999999999999999997555542 1111 124677776532233333445
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