Citrus Sinensis ID: 045903

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MESKPNPLLKLRFFTSFSKIRPPVQSLLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccHHcHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEccccccccccHHHHHHHccccHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHccHHHHHHHHHHccccHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHccccHHHHHHccHEEEccHHHHccHHHHHHHHHHHccccccccccccHHHHHcccHHHHHHHHHcHcHHHHHHHHHHHHHHcccHHHHHHcHHHHHHccccc
Coil and Loop (DISEMBL)
meskpnpllklrfftsfskirppvQSLLFITLKSATYSTICQAEAVVEEITQdqannysdnhpknsTEVLkkwgcsdsdITKLFarrptlqkaDALNLRFKLSVLnelglnsddlVKIINcrprflssrinICFEERVDFLIKLFGSREMLCKAIvrnpslltydldktiKPVVALYEQvgisrhdlipmlmsrptliprtslndqkmEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANlekfgmseDEIWSlfgrsplllTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQdmglvpeikgLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRkninkgfpf
Flexible Loop (DISEMBL)
meskpnpllklrfftsfskirppVQSLLFITLKSATYSTICQAEAVVEEITQDQannysdnhpknSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLnelglnsddlvKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRnpslltydldktiKPVVALYEQVGisrhdlipmlmsRPTLIprtslndqkmeyisrtqvsraskmyKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKrlaatsrkninkgfpf
Low Complexity Region (SEG)
MESKPNPLLKLRFFTSFSKIRPPVQSLLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF
Disordered region (IsUnstruct)
*******LLKLRFFTSFSKIRPPVQSLLFITLKSATYSTICQAEAVVEEIT*****************VLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRL**************
Disordered Region (DISOPRED)
****PNP*LKLRFFTS**************TLKSATYSTICQAEAVV***************PKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKG************N***P*
Disordered Region (DISEMBL)
MESKPNPLLKLRFFTSFSKIRPPVQSLLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF
Disordered Region (DISPRO)
**SKPNPLLKLRFFTSFSKIRPPVQSLLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESKPNPLLKLRFFTSFSKIRPPVQSLLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
255544618	384	conserved hypothetical protein [Ricinus	0.914	0.916	0.641	1e-134
297736154	410	unnamed protein product [Vitis vinifera]	0.997	0.936	0.557	1e-123
225465014	492	PREDICTED: uncharacterized protein LOC10	0.997	0.780	0.557	1e-122
224096612	318	predicted protein [Populus trichocarpa]	0.825	1.0	0.652	1e-120
147827602	545	hypothetical protein VITISV_041212 [Viti	0.914	0.645	0.486	1e-104
357513285	370	hypothetical protein MTR_8g012210 [Medic	0.893	0.929	0.540	1e-104
297839783	405	mitochondrial transcription termination	0.836	0.795	0.557	1e-103
356558967	372	PREDICTED: uncharacterized protein LOC10	0.893	0.924	0.534	1e-102
255641160	372	unknown [Glycine max]	0.948	0.981	0.515	1e-102
18412304	399	Mitochondrial transcription termination	0.818	0.789	0.559	1e-101

>gi|255544618|ref|XP_002513370.1| conserved hypothetical protein [Ricinus communis] gi|223547278|gb|EEF48773.1| conserved hypothetical protein [Ricinus communis]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/360 (64%), Positives = 286/360 (79%), Gaps = 8/360 (2%)

Query: 26  SLLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFA 85
           SL FIT K ATYST+C A+  VE  T+          PK+S  VL+KWGCSD D+ K+ +
Sbjct: 33  SLFFITTKPATYSTLCHAQ--VENDTEGGLE-----QPKDSIGVLRKWGCSDRDLLKILS 85

Query: 86  RRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLF 145
           RRP+L+ AD  +L+ KL++L  LG+   DLVKIINCRPRFLSSRIN CF+ER+ + + LF
Sbjct: 86  RRPSLRNADLTHLQSKLNLLQGLGIKPADLVKIINCRPRFLSSRINHCFDERLQYFMTLF 145

Query: 146 GSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLND 205
           GS+E+L KAIVRNPSLLTYD    IKP +ALYE++G+S++DLIPML+SRPT+IPRTS +D
Sbjct: 146 GSKEVLLKAIVRNPSLLTYDFHNCIKPAIALYERMGVSKNDLIPMLLSRPTVIPRTSFDD 205

Query: 206 QKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLL 265
           QK+EYI RT V   SKMYKYVVT+I IS+IETIREKVAN EKFG S++E+W  FGRSPL 
Sbjct: 206 QKIEYIRRTGVPNTSKMYKYVVTIIGISKIETIREKVANFEKFGFSDEEVWRFFGRSPLF 265

Query: 266 LTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEI 325
           LTLSVDKVQRNMTFVVGTMK+PANV+L+YP+LL+NNL+ V+KPR+LLA K+QDM L P+I
Sbjct: 266 LTLSVDKVQRNMTFVVGTMKLPANVVLQYPYLLYNNLDGVLKPRMLLAGKIQDMNLCPQI 325

Query: 326 KGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF 385
           KG P ++ A+RM E+RFLK F+ CHP D A+ELM  Y+ AK  KRLA +S+K I KGFPF
Sbjct: 326 KG-PLLMRAMRMTEQRFLKAFVSCHPTDVAEELMVFYEKAKCCKRLAESSKKMITKGFPF 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736154|emb|CBI24192.3| unnamed protein product [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/411 (55%), Positives = 292/411 (71%), Gaps = 27/411 (6%)

Query: 1   MESKPNPLLKLRFF-------------TSFSKIR--PPVQSLLFITL--------KSATY 37
           M++KP+  +KLRF              T  +K R   PV ++  IT         K+  +
Sbjct: 1   MKTKPHVWIKLRFLFSVSSSFFNLIPKTPVAKTRVWAPVAAISTITASVNESPVAKNRVW 60

Query: 38  STICQAEAVVEEITQDQANN---YSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKAD 94
           + I +  A    I      N     D+HP NST+V +KWGCSDS+I K+F RRP+L++AD
Sbjct: 61  TQISRTAATTALINGTPDGNLVEVRDDHPINSTDVFRKWGCSDSEIAKIFVRRPSLRRAD 120

Query: 95  ALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKA 154
              ++ KL+VL+ LGL S DLVKIINCRPRFLS RIN CF+ER++F ++LFGSR+ L KA
Sbjct: 121 PNLIQSKLNVLSLLGLTSADLVKIINCRPRFLSCRINRCFDERIEFFLELFGSRDFLRKA 180

Query: 155 IVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRT 214
           IVRNPSLL YDL+  IK VV LYE +G++R D I M+ SRPT+I RTS ND+K+EYI RT
Sbjct: 181 IVRNPSLLIYDLNSKIKRVVELYEGMGVARKDFILMVSSRPTMISRTSFNDEKLEYIRRT 240

Query: 215 QVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQ 274
            VS+ SKMYKYVV L+ ISR+ETIREKV NLEKFG SEDE+  LFGRSPL+LTLSVDKVQ
Sbjct: 241 GVSKKSKMYKYVVVLMGISRLETIREKVGNLEKFGFSEDEVLGLFGRSPLVLTLSVDKVQ 300

Query: 275 RNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSA 334
           RNMT+V+GTMK+PA  +L+ PFLL+ NLE V+KPR LLA K+++MGL P+IKG P +  A
Sbjct: 301 RNMTYVLGTMKLPARAVLDCPFLLYANLEVVLKPRFLLAGKIEEMGLAPQIKG-PKLFRA 359

Query: 335 LRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF 385
           LRM E RFL  F+ CHP+  ++ LM  Y+  KG+KRLA  S+KN+ +GFPF
Sbjct: 360 LRMKEDRFLGAFVTCHPESLSNALMEYYRNMKGLKRLAVASKKNLRQGFPF 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465014|ref|XP_002264095.1| PREDICTED: uncharacterized protein LOC100254688 [Vitis vinifera]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/411 (55%), Positives = 292/411 (71%), Gaps = 27/411 (6%)

Query: 1   MESKPNPLLKLRFF-------------TSFSKIR--PPVQSLLFITL--------KSATY 37
           M++KP+  +KLRF              T  +K R   PV ++  IT         K+  +
Sbjct: 83  MKTKPHVWIKLRFLFSVSSSFFNLIPKTPVAKTRVWAPVAAISTITASVNESPVAKNRVW 142

Query: 38  STICQAEAVVEEITQDQANN---YSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKAD 94
           + I +  A    I      N     D+HP NST+V +KWGCSDS+I K+F RRP+L++AD
Sbjct: 143 TQISRTAATTALINGTPDGNLVEVRDDHPINSTDVFRKWGCSDSEIAKIFVRRPSLRRAD 202

Query: 95  ALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKA 154
              ++ KL+VL+ LGL S DLVKIINCRPRFLS RIN CF+ER++F ++LFGSR+ L KA
Sbjct: 203 PNLIQSKLNVLSLLGLTSADLVKIINCRPRFLSCRINRCFDERIEFFLELFGSRDFLRKA 262

Query: 155 IVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRT 214
           IVRNPSLL YDL+  IK VV LYE +G++R D I M+ SRPT+I RTS ND+K+EYI RT
Sbjct: 263 IVRNPSLLIYDLNSKIKRVVELYEGMGVARKDFILMVSSRPTMISRTSFNDEKLEYIRRT 322

Query: 215 QVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQ 274
            VS+ SKMYKYVV L+ ISR+ETIREKV NLEKFG SEDE+  LFGRSPL+LTLSVDKVQ
Sbjct: 323 GVSKKSKMYKYVVVLMGISRLETIREKVGNLEKFGFSEDEVLGLFGRSPLVLTLSVDKVQ 382

Query: 275 RNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSA 334
           RNMT+V+GTMK+PA  +L+ PFLL+ NLE V+KPR LLA K+++MGL P+IKG P +  A
Sbjct: 383 RNMTYVLGTMKLPARAVLDCPFLLYANLEVVLKPRFLLAGKIEEMGLAPQIKG-PKLFRA 441

Query: 335 LRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF 385
           LRM E RFL  F+ CHP+  ++ LM  Y+  KG+KRLA  S+KN+ +GFPF
Sbjct: 442 LRMKEDRFLGAFVTCHPESLSNALMEYYRNMKGLKRLAVASKKNLRQGFPF 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096612|ref|XP_002310671.1| predicted protein [Populus trichocarpa] gi|222853574|gb|EEE91121.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/319 (65%), Positives = 259/319 (81%), Gaps = 1/319 (0%)

Query: 67  TEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFL 126
            EVL+++GCSD DI K+F RRP+L+ AD   L+FKL++L  LG+ S+DLVKIINCRPR L
Sbjct: 1   VEVLRRYGCSDDDIEKMFLRRPSLRNADLSQLQFKLNLLWGLGITSNDLVKIINCRPRLL 60

Query: 127 SSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHD 186
           S RIN  F+ER+++ + LFGSRE L KAI+RNPSLLTYD    IKPV+ LYE +GISR D
Sbjct: 61  SVRINHFFDERLEYFMTLFGSRETLLKAIIRNPSLLTYDFHNRIKPVITLYEGLGISRED 120

Query: 187 LIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLE 246
           L+P+L+SRPT+IPRTS ND+KMEYI ++ VS+ S M+K+VV++I +SR +TI EK AN+E
Sbjct: 121 LVPLLLSRPTMIPRTSFNDEKMEYIRKSGVSKDSNMFKHVVSIIGVSRSQTICEKAANIE 180

Query: 247 KFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVM 306
           KFGMS +E+W L GRSP LLTLSVDKVQRNMTFVVGTMK+PANVILE+PFLL+NNLEAV+
Sbjct: 181 KFGMSNEEVWHLIGRSPYLLTLSVDKVQRNMTFVVGTMKLPANVILEHPFLLYNNLEAVL 240

Query: 307 KPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAK 366
           KPR LLA K+++MGL P+IKG   +L ALRM E+RFLK F+ CHP   A ELM  Y TAK
Sbjct: 241 KPRWLLAGKIEEMGLCPKIKG-SLMLRALRMAEQRFLKAFVSCHPDVVAKELMEFYTTAK 299

Query: 367 GIKRLAATSRKNINKGFPF 385
            +KRLA +S+K + KGFPF
Sbjct: 300 CVKRLAVSSKKAVFKGFPF 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147827602|emb|CAN64077.1| hypothetical protein VITISV_041212 [Vitis vinifera]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/411 (48%), Positives = 263/411 (63%), Gaps = 59/411 (14%)

Query: 33  KSATYSTICQAEAVVEEITQDQANN---YSDNHPKNSTEVLKKWGCSDSDITKLFARRPT 89
           K+  ++ I +  A    I      N     D+HP NST+V +KWGCSDS+I K+F RRP+
Sbjct: 56  KNRVWTQISRTAATTALINGTPDGNLVEVRDDHPINSTDVFRKWGCSDSEIAKIFVRRPS 115

Query: 90  LQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSRE 149
           L++AD   ++ KL+VL+ LGL S DLVKIINCRPRFLS RIN CF+ER++F ++LFGSR+
Sbjct: 116 LRRADPNLIQSKLNVLSLLGLTSADLVKIINCRPRFLSCRINRCFDERIEFFLELFGSRD 175

Query: 150 MLCKAIVRNPSLLTYDLDKTI--------------------------------------- 170
            L KAIVRNPSLL YDL+  +                                       
Sbjct: 176 FLRKAIVRNPSLLIYDLNTDLVKIINCRPRFLSCRINRCFDERIEFFLELFGSRDFLRKA 235

Query: 171 ---KPVVALY-------------EQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRT 214
               P + +Y             E +G++R D I M+ SRPT+I RTS ND+K+EYI RT
Sbjct: 236 IVRNPSLLIYDLNSKIKRVVELYEGMGVARKDFILMVSSRPTMISRTSFNDEKLEYIRRT 295

Query: 215 QVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQ 274
            VS+ SKMYKYVV L+ ISR+ETIREKV NLEKFG SEDE+  LFGRSPL+LTLSVDKVQ
Sbjct: 296 GVSKKSKMYKYVVVLMGISRLETIREKVGNLEKFGFSEDEVLGLFGRSPLVLTLSVDKVQ 355

Query: 275 RNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSA 334
           RNMT+V+GTMK+PA  +L+ PFLL+ NLE V+KPR LLA K+++MGL P+IKG P +  A
Sbjct: 356 RNMTYVLGTMKLPARAVLDCPFLLYANLEVVLKPRFLLAGKIEEMGLAPQIKG-PKLFRA 414

Query: 335 LRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF 385
           LRM E RFL  F+ CHP+  ++ LM  Y+  +  + ++ + ++ +    PF
Sbjct: 415 LRMKEDRFLGAFVTCHPESLSNALMEYYRNMQRSQAISCSFKEELASRIPF 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513285|ref|XP_003626931.1| hypothetical protein MTR_8g012210 [Medicago truncatula] gi|355520953|gb|AET01407.1| hypothetical protein MTR_8g012210 [Medicago truncatula]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/361 (54%), Positives = 261/361 (72%), Gaps = 17/361 (4%)

Query: 28  LFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARR 87
           +F     ATYST   A+  VE        N  D   K++TEVL KWGC D D+T++F R 
Sbjct: 24  VFPVFTPATYSTKVPAQNEVE------LQNVKDEW-KDATEVLSKWGCGDDDLTRIFTRC 76

Query: 88  PTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGS 147
           P+L+ AD   ++ KL +L++LGL S +LVKIINCRPRF  +R+N  F+ER+D L+ +F S
Sbjct: 77  PSLRNADPSQVQSKLRLLSDLGLGSAELVKIINCRPRFFRTRLNHNFDERLDSLMSVFDS 136

Query: 148 REMLCKAIVRNPSLL---TYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLN 204
           + ML KAI RNPSLL   +YD+++ +K     YE++G+ + DL+ M++ RPT+I RTS +
Sbjct: 137 KAMLHKAIARNPSLLCENSYDIERIVKQ----YEELGVPKRDLVQMMILRPTVISRTSFD 192

Query: 205 DQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPL 264
           D+KMEYISR  +S+ SK+YKYVVTLI ISR+ETIREKV N  K+G S+DEI+ LFG+SP 
Sbjct: 193 DEKMEYISRIGLSKDSKLYKYVVTLIGISRVETIREKVLNFTKYGFSDDEIFCLFGKSPN 252

Query: 265 LLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPE 324
           +LTLS+DKVQRNMTF++GTMK+ AN+I  YP+LLF+N+E V+KPRVLLA KVQ+M     
Sbjct: 253 ILTLSIDKVQRNMTFILGTMKLEANIIFTYPYLLFSNMETVLKPRVLLAMKVQNMD--SN 310

Query: 325 IKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFP 384
           +K  P+IL ALRM+E+RF   F+ CH ++ ADELM  YK  K +KRLA +SR    +GFP
Sbjct: 311 MKT-PSILRALRMSEERFFNTFVRCHDKEIADELMEFYKRTKQVKRLAVSSRNWTTRGFP 369

Query: 385 F 385
           F
Sbjct: 370 F 370

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839783|ref|XP_002887773.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297333614|gb|EFH64032.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/323 (55%), Positives = 246/323 (76%), Gaps = 1/323 (0%)

Query: 63  PKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCR 122
           P +  +VL++WGC D +I+KLF RRP LQ+A+   L FKLS+L  LG+ S DLVKI+NCR
Sbjct: 84  PSSPLQVLRRWGCDDDEISKLFTRRPALQRANVAQLEFKLSLLKPLGITSSDLVKILNCR 143

Query: 123 PRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGI 182
           PRF S RI++  +ER+++ +++ GS+E+L + I+RNPSL+ YDLD  IKP +  Y+ +G 
Sbjct: 144 PRFFSCRIHLVLDERINYFMEILGSKEVLRRVIIRNPSLMLYDLDDKIKPAIEFYKGLGC 203

Query: 183 SRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKV 242
           S+ DL+ ML+SRPTLIPRT+ N +K EYI +T V+R SKM+KYV  +I +SR+ETI EKV
Sbjct: 204 SQQDLVTMLISRPTLIPRTNFNKEKFEYIQKTGVTRESKMFKYVAAIIGVSRMETIEEKV 263

Query: 243 ANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNL 302
            NLEKFG SE+EIW L G+ P+LL+LSV+KVQRNMTFV+ +MK+PA+ ++++P LL  NL
Sbjct: 264 RNLEKFGFSEEEIWHLCGKCPILLSLSVEKVQRNMTFVIASMKLPAHSVVKHPCLLLLNL 323

Query: 303 EAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVY 362
           E+ +KPR  L  +V +M L P IK +  I +ALRM+EKRFLKV++ CHP+D ADELM  Y
Sbjct: 324 ESRLKPRADLVKRVLEMRLKPLIKEV-NIFTALRMSEKRFLKVYVMCHPKDIADELMEFY 382

Query: 363 KTAKGIKRLAATSRKNINKGFPF 385
           + +K +KRLA   +K I KGFPF
Sbjct: 383 EKSKNMKRLAEKYKKYIRKGFPF 405

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558967|ref|XP_003547773.1| PREDICTED: uncharacterized protein LOC100799629 [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/352 (53%), Positives = 257/352 (73%), Gaps = 8/352 (2%)

Query: 34  SATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKA 93
           SAT STI   +  VE   +D  N  SD     + E+L KWGCSD D+ ++F+R P+L+ A
Sbjct: 29  SATCSTIGLTQTQVE--FEDDKNKCSD-----AAELLSKWGCSDDDLVRIFSRCPSLRNA 81

Query: 94  DALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCK 153
           D + ++ KL +L++LGL + +LVKI+NCRPRF  SRIN C EER+  L  LF ++E+L K
Sbjct: 82  DPMQVQSKLCLLSDLGLCASELVKIVNCRPRFFRSRINSCLEERMAHLTSLFETKEVLQK 141

Query: 154 AIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISR 213
           AIVRNPSLL       +K  V LYE++G+ + DLI ML+ RPT+I RTS + +K+EY+S+
Sbjct: 142 AIVRNPSLLLSAGRYNVKATVELYEKLGVKKEDLIQMLLLRPTVISRTSFDAEKLEYLSK 201

Query: 214 TQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKV 273
           T +++ SKMYKYVVTLI +SR+ETIR+KVAN  KFG SE+EI+ L G+SP +LTLS +KV
Sbjct: 202 TGLTKDSKMYKYVVTLIGVSRVETIRDKVANFVKFGFSEEEIFGLVGKSPNVLTLSTEKV 261

Query: 274 QRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILS 333
           QRNMTF++GTMK+ A ++L+ P+LL+ N++ V+KPRVLLA K+QDM    +I G P I+S
Sbjct: 262 QRNMTFILGTMKLDAKMVLKLPYLLYANVDTVLKPRVLLALKMQDMDAELQIMG-PTIVS 320

Query: 334 ALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF 385
           +LRM E+RFLK+FI CH +D A++LM  YK  K +KRL  +S+K    GFPF
Sbjct: 321 SLRMPEQRFLKLFIQCHDEDVANQLMEFYKRTKEVKRLGESSKKYSKSGFPF 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641160|gb|ACU20857.1| unknown [Glycine max]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/376 (51%), Positives = 267/376 (71%), Gaps = 11/376 (2%)

Query: 10  KLRFFTSFSKIRPPVQSLLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEV 69
           +L  F SF      V++L   T  SAT STI   +  VE   +D  N  SD     + E+
Sbjct: 8   ELNIFQSFPHF-AVVKALRVFT--SATCSTIGLTQTQVE--FEDDKNKCSD-----AAEL 57

Query: 70  LKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSR 129
           L KWGCSD D+ ++F+R P+L+ AD + ++ KL +L++LGL + +LVKI+NCRPRF  SR
Sbjct: 58  LSKWGCSDDDLVRIFSRCPSLRNADPMQVQSKLCLLSDLGLCASELVKIVNCRPRFFRSR 117

Query: 130 INICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIP 189
           IN C EER+  L  LF ++E+L KAIVRNPSLL       +K  V LYE++G+ + DLI 
Sbjct: 118 INSCLEERMAHLTSLFETKEVLQKAIVRNPSLLLSAGRYNVKATVELYEKLGVKKEDLIQ 177

Query: 190 MLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFG 249
           ML+ RPT+I RTS + +K+EY+S+T +++ SKMYKYVVTLI +SR+ETIR+KVAN  KFG
Sbjct: 178 MLLLRPTVISRTSFDAEKLEYLSKTGLTKDSKMYKYVVTLIGVSRVETIRDKVANFVKFG 237

Query: 250 MSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPR 309
            SE+EI+ L G+SP +LTLS +KVQRNMTF++GTMK+ A ++L+ P+LL+ N++ V+KPR
Sbjct: 238 FSEEEIFGLVGKSPNVLTLSTEKVQRNMTFILGTMKLDAKMVLKLPYLLYANVDTVLKPR 297

Query: 310 VLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKGIK 369
           VLLA K+QD+    +I G P I+S+LRM E+RFLK+FI CH +D A++LM  YK  K +K
Sbjct: 298 VLLALKMQDVDAELQIMG-PTIVSSLRMPEQRFLKLFIQCHDEDVANQLMEFYKRTKEVK 356

Query: 370 RLAATSRKNINKGFPF 385
           RL  +S+K    GFPF
Sbjct: 357 RLGESSKKYSKSGFPF 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412304|ref|NP_565202.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|3152561|gb|AAC17042.1| Contains similarity to myb protein homolog gb|Z13997 from Petunia hybrida [Arabidopsis thaliana] gi|332198097|gb|AEE36218.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/318 (55%), Positives = 244/318 (76%), Gaps = 3/318 (0%)

Query: 68  EVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLS 127
           +VL++WGC D +I+KLF RRP LQ+A+   L FKLS+L  LG+ S DLVKI+NCRPRF S
Sbjct: 85  QVLRRWGCDDDEISKLFTRRPALQRANVAQLEFKLSLLKPLGITSSDLVKILNCRPRFFS 144

Query: 128 SRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDL 187
            R+    +ER+++ +++ GS+E+L + I+RNPSL+ YDLD  IKP +  Y+ +G S+ DL
Sbjct: 145 CRL--VLDERINYFMEILGSKEVLRRVIIRNPSLMLYDLDDKIKPAIEYYKGLGFSQQDL 202

Query: 188 IPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEK 247
           + ML+SRPTLIPRT+ N++K EYI +T V+R SKM+KYV  +I +SR+ETI EKV NLEK
Sbjct: 203 VAMLISRPTLIPRTNFNNEKFEYIEKTGVTRESKMFKYVAVIIGVSRMETIEEKVRNLEK 262

Query: 248 FGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMK 307
           FG SE+EIW L+G+ P+LL+LSV+KVQRNMTFV+ +MK+PA+ ++++P LL  NLE+ +K
Sbjct: 263 FGFSEEEIWHLYGKCPILLSLSVEKVQRNMTFVIASMKLPAHSVVKHPCLLLLNLESRLK 322

Query: 308 PRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKG 367
           PR  L  +V +M L P IK + +I  A+RM+EKRFLKV++ CHPQD A ELM  Y+ +K 
Sbjct: 323 PRADLVKRVLEMRLKPLIKEV-SIFRAVRMSEKRFLKVYVMCHPQDIATELMEFYEKSKN 381

Query: 368 IKRLAATSRKNINKGFPF 385
           +KRLA  S+K I KGFPF
Sbjct: 382 MKRLAEKSKKYIRKGFPF 399

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:2207265	399	AT1G79220 [Arabidopsis thalian	0.981	0.947	0.492	9.7e-96
TAIR|locus:2172798	457	AT5G23930 "AT5G23930" [Arabido	0.818	0.689	0.255	2.5e-15
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.789	0.777	0.242	2.5e-13
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.774	0.735	0.245	1.1e-12
TAIR|locus:2036878	414	AT1G61990 "AT1G61990" [Arabido	0.664	0.618	0.233	6e-10
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.696	0.540	0.215	6.8e-10
TAIR|locus:2036868	418	AT1G61980 "AT1G61980" [Arabido	0.714	0.657	0.222	1.8e-08
TAIR|locus:2018042	462	AT1G62110 "AT1G62110" [Arabido	0.657	0.547	0.245	2.2e-08
TAIR|locus:2036813	415	AT1G62010 "AT1G62010" [Arabido	0.701	0.650	0.228	2.3e-08
TAIR|locus:2036843	457	AT1G61960 "AT1G61960" [Arabido	0.846	0.713	0.225	3.6e-08

TAIR|locus:2207265 AT1G79220 [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 196/398 (49%), Positives = 279/398 (70%)

Query:     4 KPNPLLKLRF-FTSFSKIRPP-VQSLLFITLKSATYSTIC--QAEAVVEE--ITQ----- 52
             K N L  +R  FTS S +R    ++L+  T  +   ST+C  ++E  +E+  ++      
Sbjct:     6 KRNFLAVIRLLFTSSSLVRKAGCRNLISATFTTRC-STLCLNESEECIEDSDLSSRRKKF 64

Query:    53 DQANNYSDNHP-KNST----EVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNE 107
             D      +    ++ T    +VL++WGC D +I+KLF RRP LQ+A+   L FKLS+L  
Sbjct:    65 DYVGEVGEKEKVRDITSSPLQVLRRWGCDDDEISKLFTRRPALQRANVAQLEFKLSLLKP 124

Query:   108 LGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLD 167
             LG+ S DLVKI+NCRPRF S R+ +  +ER+++ +++ GS+E+L + I+RNPSL+ YDLD
Sbjct:   125 LGITSSDLVKILNCRPRFFSCRLVL--DERINYFMEILGSKEVLRRVIIRNPSLMLYDLD 182

Query:   168 KTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVV 227
               IKP +  Y+ +G S+ DL+ ML+SRPTLIPRT+ N++K EYI +T V+R SKM+KYV 
Sbjct:   183 DKIKPAIEYYKGLGFSQQDLVAMLISRPTLIPRTNFNNEKFEYIEKTGVTRESKMFKYVA 242

Query:   228 TLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMP 287
              +I +SR+ETI EKV NLEKFG SE+EIW L+G+ P+LL+LSV+KVQRNMTFV+ +MK+P
Sbjct:   243 VIIGVSRMETIEEKVRNLEKFGFSEEEIWHLYGKCPILLSLSVEKVQRNMTFVIASMKLP 302

Query:   288 ANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFI 347
             A+ ++++P LL  NLE+ +KPR  L  +V +M L P IK + +I  A+RM+EKRFLKV++
Sbjct:   303 AHSVVKHPCLLLLNLESRLKPRADLVKRVLEMRLKPLIKEV-SIFRAVRMSEKRFLKVYV 361

Query:   348 HCHPQDAADELMAVYKTAKGIKRLAATSRKNINKGFPF 385
              CHPQD A ELM  Y+ +K +KRLA  S+K I KGFPF
Sbjct:   362 MCHPQDIATELMEFYEKSKNMKRLAEKSKKYIRKGFPF 399

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172798 AT5G23930 "AT5G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 87/340 (25%), Positives = 159/340 (46%)

Query:    27 LLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFAR 86
             L F+ L  A+ S + +  + V +I   +   +  ++     E+L+    S S  +K   R
Sbjct:   127 LHFLKLNGASSSELTEIVSKVPKILGKRGGKWISHYYDYVKEILQDQDSSSSS-SK---R 182

Query:    87 RPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFG 146
             + T       N    +SVL +LG+    L+ ++  R + +  +    FEE V  ++++ G
Sbjct:   183 KQT-------NRNRNVSVLRKLGVPQRLLLNLLISRAKPVCGKER--FEESVKKIVEM-G 232

Query:   147 SREMLCKAIVRNPSLLTYDL-DKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLND 205
                   K +  N   + Y+L DKTI+  V  Y ++G+S +++  +    P  +  +  N 
Sbjct:   233 FDPKSPKFV--NALYVFYELSDKTIEEKVNAYIRLGLSVNEVWAVFKKWPFSLKYSEKNI 290

Query:   206 -QKMEYISRTQVSRASK--MYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRS 262
              QK E + R  +++     + K     +  S  E I + V    + G ++DE+  +  R 
Sbjct:   291 IQKFETLKRVGLTKEEVCLVVKKYPECVGTSE-EKIVKSVKTFLELGFTKDEVLMIIKRH 349

Query:   263 PLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLV 322
             P  + L+ D V++   F+V TM  P  V+   P +L  +LE  + PR  +   +   GL+
Sbjct:   350 PQCIGLAADSVKKKTEFLVKTMGWPLKVVASTPIVLGFSLEKFVLPRCNVIKALMSNGLI 409

Query:   323 PEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVY 362
              E   +PAI S L   + +FLK+F+  H QD   EL +++
Sbjct:   410 GE---MPAISSVLTSPKLKFLKLFVEKH-QDVLPELNSIF 445

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 77/317 (24%), Positives = 142/317 (44%)

Query:    56 NNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALN-LRFKLSVLNELGLNSDD 114
             N  S   P++  ++LK +  SD+ I K     P +   +    L  KL    ++G     
Sbjct:    64 NLKSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSG 123

Query:   115 LVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPS--LLTYDLDKTIKP 172
             L K ++     +   +       V+ L  +   +      I+      LL+ D +  + P
Sbjct:   124 LGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLP 183

Query:   173 VVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKME-YISRTQ---VSRASKMYKY-VV 227
              ++  E  GI    L  +L  +P +    +L+++K+  Y+SR      +  S+M  + V+
Sbjct:   184 NISYLETCGIVGSQLASLLRRQPRIF---NLSEEKLRGYVSRALDLGFTLNSRMLVHAVI 240

Query:   228 TLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMP 287
             +L ++S  +T   KV      G SEDEI  +  RSP L+  S DK+     F +  M + 
Sbjct:   241 SLSSLSE-KTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLE 299

Query:   288 ANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLV-PEIKGLPAILSALRMNEKRFLKVF 346
                + + P +L  NLE  + PR+ +   +++ GL+  E K    ++  + M E+ FL+ +
Sbjct:   300 REALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKY 359

Query:   347 IHCHPQDAADELMAVYK 363
             +     + A+EL+  YK
Sbjct:   360 VVRFGDEIAEELLVAYK 376

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 76/309 (24%), Positives = 140/309 (45%)

Query:    59 SDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRF-KLSVLNELGLNSDDLVK 117
             S   P     +L+  G + + I+ L  +RP L  A+A ++   KLS    +G++   L +
Sbjct:    97 SPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLAR 156

Query:   118 IINCRPRFLS-SRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVAL 176
              +   P  L+ S +N       +FL  +  S E +  A+ R   +   D  K + P +  
Sbjct:   157 TLASDPTILTRSLVNQLIPS-YNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINY 215

Query:   177 YEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRI- 235
               + G+    +  +L   P  + + +   Q +   ++       K   +V+ + A+S   
Sbjct:   216 MAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKS-TFVLAIHALSGKG 274

Query:   236 -ETIREKVANL-EKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILE 293
              ++I +K   + +++G SED+I   F + P  + LS  K+ R M + V  M M    I +
Sbjct:   275 NKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQ 334

Query:   294 YPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQD 353
              P +LF +LE  + PR  +   +   GLV E   L ++L  +   EK FL+  +  + ++
Sbjct:   335 CPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPV---EKVFLEKLVIKYEEE 391

Query:   354 AADELMAVY 362
                ELM +Y
Sbjct:   392 LP-ELMNLY 399

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2036878 AT1G61990 "AT1G61990" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 66/283 (23%), Positives = 137/283 (48%)

Query:    43 AEAVVEEIT-QDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALN-LRF 100
             AE++  +++ +D+ N      P +   + + +G +DS I+ +    P L  ADA   L  
Sbjct:    69 AESISRKVSFEDKVN------PDSVLSLFRSYGFTDSQISTIITDYPLLLVADAKKALGR 122

Query:   101 KLSVLNELGLNSDDLVKIINCRPRFLSSR-INICFEERVDFLIKLFGSREMLCKAIVRNP 159
             KL +L   G +S ++ +I++  PR L  + I + ++   D ++    S   L +    N 
Sbjct:   123 KLQILQSRGASSSEITEIVSTVPRILGKKSITVYYDAVKDIIVADTSSSYELPQGSQGNK 182

Query:   160 SLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRA 219
                       I+ V AL E +G+    L+P+L+S+   +      D  ++ +   ++   
Sbjct:   183 ----------IRNVSALRE-LGMPSRLLLPLLVSKSQPVCGKENFDASLKKV--VEMGFD 229

Query:   220 SKMYKYVVTLIAISRI--ETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNM 277
                 K+V+ L  + ++  +TI EKV      G + D++W +F ++P +L +S  K+ ++ 
Sbjct:   230 PTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLKVSKKKILKSA 289

Query:   278 -TFV-VGTMKMPANVILE-YPFLLFNNLEAVMKPRVLLAAKVQ 317
              TF+ +G  +    ++++ YP  +  ++E+V K    L  K++
Sbjct:   290 ETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMK 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 61/283 (21%), Positives = 134/283 (47%)

Query:    68 EVLKKWGCSDSDITKLFARR-PTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFL 126
             + L  +G  +S   +++ R  P+LQ  +  + + +L  L  +G+   D+ +++  +P+ L
Sbjct:   189 DYLSTFGLKESHFVQMYERHMPSLQ-INVFSAQERLDYLLSVGVKHRDIKRMLLRQPQIL 247

Query:   127 SSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVA-LYEQVGISRH 185
                +    +  + FL+ L      + + +   PSL +Y ++ +++P +  L E+VGI   
Sbjct:   248 QYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKET 307

Query:   186 DLIPMLMSRPT-LIPRTSLN-DQKMEYISRTQ-VSRAS--KMYKYVVTLIAISRIETIRE 240
             D+  ++   P  L+ R  +  + +  ++S+     R S  KM K    L+  S  +    
Sbjct:   308 DVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLP 367

Query:   241 KVANLEKFGMSEDEIWSLFGRSPLLLTLSV-DKVQRNMTFVVGTMKMPANVILEYPFLLF 299
             ++  L   GM   +I  +      +L+LS+ D ++    ++V  +    +++ +YP  L 
Sbjct:   368 RINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLS 427

Query:   300 NNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRF 342
              +L+  ++PR     +++ +      KG P  LS+L  N++ F
Sbjct:   428 LSLDQRIRPRHRFLVELKKVR-----KG-PFPLSSLVPNDESF 464

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2036868 AT1G61980 "AT1G61980" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 66/297 (22%), Positives = 139/297 (46%)

Query:    33 KSATYSTICQAEAVVEEITQDQAN--NYSD-NHPKNSTEVLKKWGCSDSDITKLFARRPT 89
             KS T S +  +  + +++ +  +   ++ D ++P +   +L+  G +DS I+ +    P 
Sbjct:    51 KSFTVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQ 110

Query:    90 LQKADA-LNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSR----INICFEERVDFLIKL 144
             L  ADA  +L  KL  L   G +S +L +I++  P+ L  R    I++ ++   + L+  
Sbjct:   111 LLVADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLLDK 170

Query:   145 FGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLN 204
                 E  C+   +       +L+  I+ +  L E +G+    L P+L+S    +      
Sbjct:   171 SSKSEKSCQPFPQG------NLENKIRNLSVLRE-LGMPHKLLFPLLISCDVPVFGKEKF 223

Query:   205 DQKMEYISRTQVSRASKMYKYVVTLIAISRI--ETIREKVANLEKFGMSEDEIWSLFGRS 262
             ++ ++ +       ++   K+V  L  + R+  + I +KV   ++ G   + +W++F R 
Sbjct:   224 EESLKKVVEMGFDPSTS--KFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRW 281

Query:   263 PLLLTLSVDKVQRNM-TFV-VGTMKMPANVILE-YPFLLFNNLEAVMKPRVLLAAKV 316
             P  LT S  K+   + TF+ +G  +   +V+++ +P  +  + E V K    L  K+
Sbjct:   282 PNFLTHSEKKILNTIETFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKM 338

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2018042 AT1G62110 "AT1G62110" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 66/269 (24%), Positives = 125/269 (46%)

Query:   102 LSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSL 161
             +SVL +LG+    L  ++    + +  + N  FEE +  ++++ G      K +    ++
Sbjct:   195 VSVLRDLGVPQKLLFSLLISDAQPVCGKEN--FEESLKKVVEM-GFDPTTSKFVQALRAV 251

Query:   162 LTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASK 221
               +  DKTI+  V +Y+  G +  D+  M    P  +   + +++K+     T + +   
Sbjct:   252 YRFT-DKTIEERVNVYKGFGFAVEDVWAMFKKCPYFL---NSSEKKIGQTIET-LKKCGL 306

Query:   222 MYKYVVTLIAI--SRIETIREKVAN-LEKF---GMSEDEIWSLFGRSPLLLTLSVDKVQR 275
             +   V++++      I T  +K+ N +E F   G S DE  ++  R P  L LS + V++
Sbjct:   307 LEDEVISVLKKYPQCIGTSEQKILNSIEIFLGLGFSRDEFITMVKRFPQCLILSAETVKK 366

Query:   276 NMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKG-LPAILSA 334
              + FVV  M  P   ++  P +L  NLE    PR  +   +    L+ +    LP + S 
Sbjct:   367 KIEFVVKKMNWPLKDVVSNPTVLGYNLEKRTVPRCNVIEALMSKRLLGDTGSELPPMSSV 426

Query:   335 LRMNEKRFLKVFIHCH-PQDAADELMAVY 362
             L   ++ FLK ++  H  ++   ELM +Y
Sbjct:   427 LVCTDELFLKRYVRNHGDKELVLELMTIY 455

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036813 AT1G62010 "AT1G62010" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 65/284 (22%), Positives = 129/284 (45%)

Query:    55 ANNYSDNHPKNST-EVLKKWGCSDSDITKLF-ARRPTLQKADALNLRFKLSVLNELGLNS 112
             A   +D    +S  ++L+ +G +DS I+ +  +    L   DA +L  KL  L   G +S
Sbjct:    61 ATKLTDKGNSDSVLDLLRSYGFTDSQISSIIRSDSRVLIDNDATSLGSKLQFLQSRGASS 120

Query:   113 DDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKP 172
              +L ++++  P+ L  R         DF IK+    +   K    + SL        I+ 
Sbjct:   121 SELTEVVSTVPKILGKREGKSLSRYYDF-IKVIIEADKSSKYEKISHSLAQ---GNKIRN 176

Query:   173 VVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAI 232
             ++ L E +G+ +  L+ +L+S+   +      D  ++ +        +  + + + ++  
Sbjct:   177 ILVLRE-LGVPQKRLLLLLISKSQPVCGKEKFDASLKKVVEMGFDPTTSTFVHALHMLYQ 235

Query:   233 SRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNM-TFV-VGTMKMPANV 290
                +TI EK+      G S D++W++F + P  LT S  KV  ++ TF+ +G  +    +
Sbjct:   236 MSDKTIEEKIRVYRSVGFSVDDVWAMFKKWPRSLTHSEKKVANSIETFLGLGFSRDVFMM 295

Query:   291 ILE-YPFLLFNNLEAVMKPRVLLAAKVQDMGL-VPEIKGLPAIL 332
             + + +P  +  + EAV K    L   V++M   V  +  +P +L
Sbjct:   296 MFKRFPPCIGYSTEAVKKKTEFL---VKEMNWPVKAVASIPQVL 336

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036843 AT1G61960 "AT1G61960" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 81/359 (22%), Positives = 153/359 (42%)

Query:    20 IRPPVQSLLFITLKSATYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSD 79
             I P +QSL     + A+ S + Q  + V +I   + +     +     ++++      S 
Sbjct:   120 IAPKLQSL---QSRGASSSELTQIVSTVPKILGKRGHKSITVYYDFVKDIIE--ADKSSS 174

Query:    80 ITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVD 139
               KL    P   K + +     +SVL ELG+    L       P  +S    +C +ER +
Sbjct:   175 YEKLCHSFPQGNKKNKIR---NISVLRELGVAQRLLF------PLLISDGQPVCGKERFE 225

Query:   140 FLIKL---FGSREMLCKAIVRNPSLLTYDL-DKTIKPVVALYEQVGISRHDLIPMLMSRP 195
               +K     G      K +      + Y + DKTI+  V +Y+++G    D+  +    P
Sbjct:   226 ESLKKVVEMGFDPETTKFV--EALRVIYRMSDKTIEEKVNVYKRLGFGVADVWAIFKKWP 283

Query:   196 TLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETI---REKVAN-LEKF--- 248
             + +   S +++K+ +   T   ++  + K+ V L+     + I    +K+ N +E F   
Sbjct:   284 SFL---SYSEKKITHTFETL--KSCGLLKHEVLLLLKKHPKCICSSEQKIVNSIETFLGL 338

Query:   249 GMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKP 308
             G S DE   +  R P  +  + + V++   F+V  M  P   ++  P +   +LE    P
Sbjct:   339 GFSRDEFAMMVKRYPQCIDYTAETVKKKTEFIVKNMNWPLEALVSIPQVFGYSLEKRTVP 398

Query:   309 RVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDAADELMAVYKTAKG 367
             R  +   +   GL+ +    P + S L   ++ FL+ ++  H +  A ELMA++    G
Sbjct:   399 RCNVIKTLISKGLMKDGSEAPPMSSVLTSTDQAFLRRYVMKHDK-LAPELMAIFTGENG 456

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
pfam02536	345	pfam02536, mTERF, mTERF	5e-49
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	1e-14
pfam02536	345	pfam02536, mTERF, mTERF	6e-11
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	1e-06
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-05

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  168 bits (428), Expect = 5e-49
 Identities = 72/276 (26%), Positives = 122/276 (44%), Gaps = 6/276 (2%)

Query: 69  VLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSS 128
           + K         +KL     +L + +  N    +SVL ELG+    L  ++  RPR +  
Sbjct: 76  LKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVCG 135

Query: 129 RINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLI 188
           +    FEE +  ++++        + I + P LL Y  DKTIKP V   + +G S  D+ 
Sbjct: 136 KEV--FEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVW 193

Query: 189 PMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKF 248
            +L   P L+  +     + + I +T            +        + I  K+  L   
Sbjct: 194 AILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKIEFLLGL 253

Query: 249 GMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKP 308
           G S +EI  +  R P LL LSV+KV++   F+V  M  P   ++E+P +   +LE  +KP
Sbjct: 254 GFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKP 313

Query: 309 RVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLK 344
           R  +   +   G       LP++ S L+  ++ FL+
Sbjct: 314 RCNVVKALMSKGKSI----LPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 58/259 (22%), Positives = 117/259 (45%), Gaps = 29/259 (11%)

Query: 68  EVLKKWGCSDSDITKLFARRPTLQKADALNLRFKL------SV--LNELGLNSDDLVKII 119
           + L+       DI ++  R P L       L FKL      SV  L  +G+   D+  ++
Sbjct: 165 KYLQGLDVKRQDIPRVLERYPEL-------LGFKLEGTMSTSVAYLVSIGVAPRDIGPML 217

Query: 120 NCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQ 179
              P  L  R+    + +VD+L  L   R  + + + + P +L +DL++T+KP V    +
Sbjct: 218 TRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLE 277

Query: 180 VGISRHDLIPMLMSRPTLIP---RTSLNDQKMEYISRTQVSRAS------KMYKYVVTLI 230
            G+ +  L  ++   P ++    +  L +Q+    S+ ++          K+ +    ++
Sbjct: 278 FGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQ----IV 333

Query: 231 AISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANV 290
           +++R     + V  L   G S  ++  +  R P +L L+++ ++ ++ F    MK P   
Sbjct: 334 SLNRN-VALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKE 392

Query: 291 ILEYPFLLFNNLEAVMKPR 309
           ++E+P      LE+ +KPR
Sbjct: 393 LVEFPAYFTYGLESRIKPR 411

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 62.9 bits (153), Expect = 6e-11
 Identities = 52/244 (21%), Positives = 105/244 (43%), Gaps = 4/244 (1%)

Query: 69  VLKKWGCSDSDITKLFARRPTLQKADAL-NLRFKLSVLNELGLNSDDLVKIINCRPRFLS 127
           +L+  G +DS I+ +    P L  ADA  NL+ KL  L   G +  +L KI++  P+ L 
Sbjct: 3   LLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILG 62

Query: 128 SRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDL 187
            +         DFL K+  +       + + P  L    +      V++  ++G+    L
Sbjct: 63  KKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLL 122

Query: 188 IPMLMSRPTLIPRTSLNDQKMEYISRTQVSRAS--KMYKYVVTLIAISRIETIREKVANL 245
             +L+SRP  +    + ++ ++ +        +  ++      L+  S  +TI+  V  L
Sbjct: 123 FSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFL 182

Query: 246 EKFGMSEDEIWSLFGRSPLLLTLSVDK-VQRNMTFVVGTMKMPANVILEYPFLLFNNLEA 304
           +  G S +++W++  + P LL  S  K +Q         +    +VI + P  +  + + 
Sbjct: 183 KSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQK 242

Query: 305 VMKP 308
           ++  
Sbjct: 243 ILNK 246

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 47/216 (21%), Positives = 100/216 (46%), Gaps = 9/216 (4%)

Query: 102 LSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSL 161
           L  L +LG+    L +++   P+ L + + +     V +L  L   R+ + + + R P L
Sbjct: 128 LDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPEL 187

Query: 162 LTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIP-RTSLN-DQKMEYISRTQVSR- 218
           L + L+ T+   VA    +G++  D+ PML   P ++  R   N   K++Y+    + R 
Sbjct: 188 LGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRL 247

Query: 219 -ASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVD-KVQRN 276
             +++ +    ++     ET++  V  L +FG+ ++ + S+  + P +L L +  K+   
Sbjct: 248 AVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQ 307

Query: 277 MTFVVGTMKMP----ANVILEYPFLLFNNLEAVMKP 308
             ++   +K+       VI + P ++  N    +K 
Sbjct: 308 QYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKH 343

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 28/214 (13%)

Query: 136 ERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRP 195
           ERV+FL KL  + E     I   P +L   + K + PV+   E++G++R  L  +L   P
Sbjct: 94  ERVEFLHKLGLTIE----DINEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYP 149

Query: 196 TLIPRTSLNDQK--MEY-----ISRTQVSRASKMYKYVVTLIAISRIE-TIREKVANLEK 247
            ++  + + D    ++Y     + R  + R  + Y  ++      ++E T+   VA L  
Sbjct: 150 QVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGF----KLEGTMSTSVAYLVS 205

Query: 248 FGMSEDEIWSLFGRSPLLLTLSVDKV-QRNMTFVVG---TMKMPANVILEYPFLLFNNLE 303
            G++  +I  +  R P +L + V    +  + ++          A ++ + P++L  +LE
Sbjct: 206 IGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLE 265

Query: 304 AVMKPRV--LLAAKVQDMGL------VPEIKGLP 329
             +KP V  LL   V+   L       P+I GL 
Sbjct: 266 ETVKPNVECLLEFGVRKEALPSVIAQYPDILGLD 299

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.96
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.95
KOG1267	413	consensus Mitochondrial transcription termination	99.82
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.1
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.01
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	92.62
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	92.27
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	90.95

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=7.8e-54  Score=435.09  Aligned_cols=281  Identities=19%  Similarity=0.328  Sum_probs=245.9

Q ss_pred             chHHHHHHHhCCCChHHHHHHHHhCCCccccCcc-cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHH
Q 045903           63 PKNSTEVLKKWGCSDSDITKLFARRPTLQKADAL-NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFL  141 (385)
Q Consensus        63 ~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e-~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL  141 (385)
                      ...+++||+++|+++++|++++.++|++|.++++ ++.++++||.++|++.++|++++.++|++|++++++++.|+++||
T Consensus       160 L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL  239 (487)
T PLN03196        160 LAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYL  239 (487)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHH
Confidence            3447888888888888888888888888888887 588888888888888888888888888888888888888888888


Q ss_pred             HhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCChhhHHHHHhhCCcccccCC--CChhHHHHH-HhhCCCc
Q 045903          142 IKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTS--LNDQKMEYI-SRTQVSR  218 (385)
Q Consensus       142 ~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~~~--~~~~kv~~L-~~lG~~~  218 (385)
                      +++|++.++|++++.++|++|++++|++++|++++|+++|++.+++..+++++|.+++.+.  ...++++++ .++|+++
T Consensus       240 ~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~  319 (487)
T PLN03196        240 ESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDP  319 (487)
T ss_pred             HHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCH
Confidence            8888888888888888888888888878888888888888888888888888888887642  345566676 6789988


Q ss_pred             ch--hhHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhcCC
Q 045903          219 AS--KMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPF  296 (385)
Q Consensus       219 ~~--~~~~~~p~il~~s~~~~l~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~  296 (385)
                      ++  .++...|+++++| +++|+++++||+++||+.++++.||+++|++|++|.++|+++++||+++||++.++|++||+
T Consensus       320 e~i~~~v~k~P~il~lS-e~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~  398 (487)
T PLN03196        320 EDFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPA  398 (487)
T ss_pred             HHHHHHHHhcchhhccc-HHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChH
Confidence            87  4678889999987 58999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcccccHHHHHHHHHHHHCCCCcccccCCcchhhhcccHHhHHHhhcccCCCC
Q 045903          297 LLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQD  353 (385)
Q Consensus       297 ~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~Se~~F~~~~v~~~~~~  353 (385)
                      ||+||||+||+|||++   |+++|+.      .++.++|+|||++|+++|+.+|.|.
T Consensus       399 ~LsySLEkRI~PR~~~---L~~kGl~------~sL~~~L~~sd~~F~~r~v~~y~e~  446 (487)
T PLN03196        399 YFTYGLESRIKPRYER---VAKKGIK------CSLAWFLNCSDDKFEQRMSGDFIEG  446 (487)
T ss_pred             HhccChhhhhHHHHHH---HHHcCCC------CCHHHHhccCHHHHHHHHhhhcccc
Confidence            9999999999999997   4899973      6899999999999999999999874

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3.6e-47  Score=373.60  Aligned_cols=276  Identities=26%  Similarity=0.435  Sum_probs=172.4

Q ss_pred             chHHHHHHHhCCCChHHHHHHHHhCCCccccCcc-cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHH
Q 045903           63 PKNSTEVLKKWGCSDSDITKLFARRPTLQKADAL-NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFL  141 (385)
Q Consensus        63 ~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e-~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL  141 (385)
                      ...+++||.+.|++.+++++++.++|.++..+.+ ++.|.++||+++|++++|+++++.++|++|..+.+.++.+++.||
T Consensus        33 l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L  112 (345)
T PF02536_consen   33 LLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFL  112 (345)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHH
T ss_pred             hhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhhhhhHH
Confidence            3345666666666666666666666666666533 466666666666666666666666666665555555566666666


Q ss_pred             HhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCChhhHHHHHhhCCcccccC--CCChhHHHHHHhhCCCcc
Q 045903          142 IKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRT--SLNDQKMEYISRTQVSRA  219 (385)
Q Consensus       142 ~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~~--~~~~~kv~~L~~lG~~~~  219 (385)
                      +++|++.+.+.+++..+|..+...  +++.+.++++.++|++.+++.+++..+|+++..+  ....+++++++++|++.+
T Consensus       113 ~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~  190 (345)
T PF02536_consen  113 RSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKE  190 (345)
T ss_dssp             HHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GH
T ss_pred             hhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccch
Confidence            666666554555555555543322  1233333333333333333333333333322221  134666777777777666


Q ss_pred             h--hhHHHHHHHHHhCc--------------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Q 045903          220 S--KMYKYVVTLIAISR--------------------------------IETIREKVANLEKFGMSEDEIWSLFGRSPLL  265 (385)
Q Consensus       220 ~--~~~~~~p~il~~s~--------------------------------~~~l~~kv~~L~~~G~s~~ev~~mv~~~P~l  265 (385)
                      +  .++...|.+++.+.                                .+++.+++++|.++|||.+|+++|+.++|++
T Consensus       191 ~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~i  270 (345)
T PF02536_consen  191 DIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQI  270 (345)
T ss_dssp             HHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGG
T ss_pred             hhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcch
Confidence            5  45555554444333                                3589999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHhcCCChhhHhhcCCccccCcccccHHHHHHHHHHHHCCCCcccccCCcchhhhcccHHhHHH
Q 045903          266 LTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLK  344 (385)
Q Consensus       266 L~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~Se~~F~~  344 (385)
                      |++|.++++++++||+++||++.++|+++|++|+||+|+||+|||+++++|+++|+ .   ..+++.++|++||++|++
T Consensus       271 L~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~---~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  271 LSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-I---INPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             GGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-G---GGGGS-HHHHHHHHHHT-
T ss_pred             hhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-C---CCCCHHHHhhccHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999996 2   238999999999999975

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.7e-41  Score=344.80  Aligned_cols=303  Identities=17%  Similarity=0.276  Sum_probs=267.6

Q ss_pred             cccccchHHHHHhhchhccccCCC-CCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcc-cHHHHHHHHHhCCCChHh
Q 045903           37 YSTICQAEAVVEEITQDQANNYSD-NHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADAL-NLRFKLSVLNELGLNSDD  114 (385)
Q Consensus        37 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e-~l~~~l~~L~~lG~~~~~  114 (385)
                      ..++|++.....  .-|++.-.+. .+..++++||+++|++.++|++++.++|++|..+++ ++.|+++||+++|++.++
T Consensus        99 L~s~G~~~~~i~--~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~  176 (487)
T PLN03196         99 LHKLGLTIEDIN--EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQD  176 (487)
T ss_pred             HHHcCCChHHhc--cCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHH
Confidence            345555554333  1222322233 467779999999999999999999999999999998 699999999999999999


Q ss_pred             HHHHHHhCccccccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCChhhHHHHHhhC
Q 045903          115 LVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSR  194 (385)
Q Consensus       115 I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~  194 (385)
                      |++++.++|++|++++++++.|+++||.++|++.+++++++.++|++|+++++++++|+++||+++|++.++|++++.++
T Consensus       177 i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~  256 (487)
T PLN03196        177 IPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKR  256 (487)
T ss_pred             HHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCC--CChhHHHHHHhhCCCcch--hhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCccccC
Q 045903          195 PTLIPRTS--LNDQKMEYISRTQVSRAS--KMYKYVVTLIAISRIETIREKVANLE-KFGMSEDEIWSLFGRSPLLLTLS  269 (385)
Q Consensus       195 P~il~~~~--~~~~kv~~L~~lG~~~~~--~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~ev~~mv~~~P~lL~~s  269 (385)
                      |++|+.+.  ...+++++|.++|+++++  .++...|.+++++.++++.+++++|. ++||+.+++..++.++|+++++|
T Consensus       257 P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lS  336 (487)
T PLN03196        257 PYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN  336 (487)
T ss_pred             CceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhccc
Confidence            99999873  567889999999999987  56778889999887789999999996 79999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCChhhH----hhcCCccccCcccccHHHHHHHHHHHHCCCCcccccCCcchhhhccc-HHhHHH
Q 045903          270 VDKVQRNMTFVVGTMKMPANVI----LEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMN-EKRFLK  344 (385)
Q Consensus       270 ~e~l~~k~~fL~~~mg~~~~~i----~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~S-e~~F~~  344 (385)
                      .++++++++||.+ +|++.++|    .++|++|+||.+ .|++++.|+  ..++|+..  ........+|++| |++...
T Consensus       337 e~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~-~l~~k~dFl--vneMg~~~--~~Iv~fP~~LsySLEkRI~P  410 (487)
T PLN03196        337 RNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLE-IMKPSLEFF--KKEMKRPL--KELVEFPAYFTYGLESRIKP  410 (487)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHH-HHHHHHHHH--HHHhCCCH--HHHHhChHHhccChhhhhHH
Confidence            9999999999997 99999887    699999999996 999999997  56778743  3446677888999 778888


Q ss_pred             hhc
Q 045903          345 VFI  347 (385)
Q Consensus       345 ~~v  347 (385)
                      ||-
T Consensus       411 R~~  413 (487)
T PLN03196        411 RYE  413 (487)
T ss_pred             HHH
Confidence            773

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.96  E-value=2.1e-28  Score=246.07  Aligned_cols=277  Identities=21%  Similarity=0.395  Sum_probs=241.9

Q ss_pred             ccccccchHHHHHhhchhccccCCCCCchHHHHHHHhCCCChHHHHHHHHhCCCccccCccc-HHHHHHHHHhCCCChHh
Q 045903           36 TYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALN-LRFKLSVLNELGLNSDD  114 (385)
Q Consensus        36 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~-l~~~l~~L~~lG~~~~~  114 (385)
                      -.+++|+..+.+..+++. +.++...+|++++++|+++|+++.+|..++..+|.++..+.++ +.+++.+|.+.|++.++
T Consensus        65 ~~~s~~~~~~~~~~~~~~-~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~  143 (413)
T KOG1267|consen   65 LVDSLGLSIKLARKLSRE-VSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSE  143 (413)
T ss_pred             eccccccchhhHHHHHHH-HHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccc
Confidence            347788888888888776 8889999999999999999999999999999999999999985 88999899999999999


Q ss_pred             HHHHHHhCccccccccchhhHhHHHHHHhhh--c---------------------------------ChhhHh-------
Q 045903          115 LVKIINCRPRFLSSRINICFEERVDFLIKLF--G---------------------------------SREMLC-------  152 (385)
Q Consensus       115 I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g--~---------------------------------~~~~v~-------  152 (385)
                      +++++...|.+|+.+.+.++.+.++|+++++  .                                 ..+.+.       
T Consensus       144 l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~  223 (413)
T KOG1267|consen  144 LSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQP  223 (413)
T ss_pred             cchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCc
Confidence            9999999999999888888999999999975  1                                 111111       


Q ss_pred             -------------------------hhhhhCCcccccCccccHHHHHHHHHHcCCChhhHHHHHhhCCcccccCC-CChh
Q 045903          153 -------------------------KAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTS-LNDQ  206 (385)
Q Consensus       153 -------------------------~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~~~-~~~~  206 (385)
                                               +++.++|.+++++.++.+++++++|+++|++.++|..++.++|++++++. .+..
T Consensus       224 ~~~~~~~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~  303 (413)
T KOG1267|consen  224 RPVLLYLKLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLK  303 (413)
T ss_pred             cceeeehhhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhH
Confidence                                     33445677777789999999999999999999999999999999999875 3456


Q ss_pred             HHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccCHH-HHHHHHHHHHHhcC
Q 045903          207 KMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVD-KVQRNMTFVVGTMK  285 (385)
Q Consensus       207 kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e-~l~~k~~fL~~~mg  285 (385)
                      +++++.+.  .++   +...|+++..+ +..+.++++++..+|++.+++..|++++|+++++|.+ .++.+.+|+.+.|+
T Consensus       304 ~~~~~~~~--~~~---~~k~p~~l~~s-~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~  377 (413)
T KOG1267|consen  304 TTEYLLKN--PKH---ILKFPQLLRSS-EDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLL  377 (413)
T ss_pred             HHHHHHhc--chh---hhhhhhhhhcc-chhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcC
Confidence            67777666  333   67788888554 6999999999999999999999999999999999999 78899999999999


Q ss_pred             CChhhHhhcCCccccCcccccHHHHHHHHHHHHC
Q 045903          286 MPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDM  319 (385)
Q Consensus       286 ~~~~~i~~~P~~L~~Sle~rIkpR~~~l~~L~~~  319 (385)
                      ++.++++.+|++++|++|+|+.||+.+..++..+
T Consensus       378 ~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  378 RPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             chHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            9999999999999999999999999998766544

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.95  E-value=1.2e-28  Score=242.12  Aligned_cols=244  Identities=24%  Similarity=0.373  Sum_probs=192.1

Q ss_pred             cccccccchHHHHHhh--chhccccCC-CCCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcc-cHHHHHHHHHhCCC
Q 045903           35 ATYSTICQAEAVVEEI--TQDQANNYS-DNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADAL-NLRFKLSVLNELGL  110 (385)
Q Consensus        35 ~~~~~~g~~~~~~~~~--~~~~~~~~~-~~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e-~l~~~l~~L~~lG~  110 (385)
                      .+.-++|++.....++  .-|++...+ .++..+.+++|+++|++++|+.+++.++|+++..+.+ ++.+++++|+++|+
T Consensus        38 ~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv  117 (345)
T PF02536_consen   38 EFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGV  117 (345)
T ss_dssp             HHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT-
T ss_pred             HHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCC
Confidence            4557888885554433  222233344 4567789999999999999999999999999998877 79999999999999


Q ss_pred             ChHhHHHHHHhCccccccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCChhhHHHH
Q 045903          111 NSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPM  190 (385)
Q Consensus       111 ~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~~~~i~~l  190 (385)
                      +.+.+.+++..+|.++...  +++.+.++++.++|++++++.+++.++|+++..+.+++++++++||+++|++.+++.++
T Consensus       118 ~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~  195 (345)
T PF02536_consen  118 PPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKL  195 (345)
T ss_dssp             -HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHH
T ss_pred             cHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhhhHH
Confidence            9998999999988876655  58999999999999999999999999999998888889999999999999999999999


Q ss_pred             HhhCCcccccCC----------------------------------CChhHHHHHHhhCCCcch--hhHHHHHHHHHhCc
Q 045903          191 LMSRPTLIPRTS----------------------------------LNDQKMEYISRTQVSRAS--KMYKYVVTLIAISR  234 (385)
Q Consensus       191 l~~~P~il~~~~----------------------------------~~~~kv~~L~~lG~~~~~--~~~~~~p~il~~s~  234 (385)
                      +.++|.+++.+.                                  ...++++++.++|+++++  .|+...|++++++.
T Consensus       196 l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~  275 (345)
T PF02536_consen  196 LRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSI  275 (345)
T ss_dssp             HHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-H
T ss_pred             hhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcch
Confidence            999999998763                                  134567899999999988  79999999999986


Q ss_pred             HHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCccccCHHH-HHHH---HHHHHHhcCC
Q 045903          235 IETIREKVANLE-KFGMSEDEIWSLFGRSPLLLTLSVDK-VQRN---MTFVVGTMKM  286 (385)
Q Consensus       235 ~~~l~~kv~~L~-~~G~s~~ev~~mv~~~P~lL~~s~e~-l~~k---~~fL~~~mg~  286 (385)
                       +.++++++||. ++|++.++|    .++|.+|++|.|+ |+++   ++++.+ .|.
T Consensus       276 -e~l~~k~~fl~~~m~~~~~~i----~~~P~~l~~sLe~ri~PR~~~~~~l~~-~g~  326 (345)
T PF02536_consen  276 -EKLKPKFEFLVKEMGLPLEEI----VEFPQYLSYSLEKRIKPRYEVLKVLKS-KGL  326 (345)
T ss_dssp             -HHHHHHHHHHHHCCT--HHHH----HHSCHHHCS-HHHHHHHHHHHHHTT---TTT
T ss_pred             -hhhhHHHHHHHHHhCcCHHHH----hhCCceeEechhhhhhhHHHHHHHHHH-CcC
Confidence             66999999998 599999988    4899999999995 9999   777776 563

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.82  E-value=6.2e-20  Score=184.72  Aligned_cols=234  Identities=21%  Similarity=0.329  Sum_probs=185.4

Q ss_pred             hCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHHhhhcChhhH
Q 045903           72 KWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREML  151 (385)
Q Consensus        72 ~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v  151 (385)
                      ++|.+...+..+..   .+...+..+....+++|+++|++..+|.+++..+|.++..+.++.+.++..+|.+.|.+...+
T Consensus        68 s~~~~~~~~~~~~~---~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l  144 (413)
T KOG1267|consen   68 SLGLSIKLARKLSR---EVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSEL  144 (413)
T ss_pred             ccccchhhHHHHHH---HHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCcccccc
Confidence            46655544444332   233345557889999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhCCcccccCccccHHHHHHHHHHc-----------------------------------CCChhhHHHHHhhCCc
Q 045903          152 CKAIVRNPSLLTYDLDKTIKPVVALYEQV-----------------------------------GISRHDLIPMLMSRPT  196 (385)
Q Consensus       152 ~~il~~~P~lL~~s~e~~l~~~v~~L~~l-----------------------------------Gl~~~~i~~ll~~~P~  196 (385)
                      ..++..-|.+|+.+.+.++.+.++|++++                                   |+..+.+..++..+|.
T Consensus       145 ~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~  224 (413)
T KOG1267|consen  145 SSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQPR  224 (413)
T ss_pred             chhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCcc
Confidence            99998888888876666677777776665                                   3344444444444455


Q ss_pred             ccccCCCChhHHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHH
Q 045903          197 LIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRN  276 (385)
Q Consensus       197 il~~~~~~~~kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k  276 (385)
                      .+.........+.++.++||++.+.++.+++.+++.+.++++++++++|+++||+.+|++.|++++|++|++|.+++..+
T Consensus       225 ~~~~~~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~  304 (413)
T KOG1267|consen  225 PVLLYLKLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKT  304 (413)
T ss_pred             ceeeehhhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHH
Confidence            44332234555678899999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhcCCChhhHhhcCCccccCcccccHHHHHHH
Q 045903          277 MTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLA  313 (385)
Q Consensus       277 ~~fL~~~mg~~~~~i~~~P~~L~~Sle~rIkpR~~~l  313 (385)
                      ++|+.+.    .+++.++|+++.+|.. .+.+|++++
T Consensus       305 ~~~~~~~----~~~~~k~p~~l~~s~~-~l~~~ie~l  336 (413)
T KOG1267|consen  305 TEYLLKN----PKHILKFPQLLRSSED-KLKPRIEFL  336 (413)
T ss_pred             HHHHHhc----chhhhhhhhhhhccch-hhhhhHHHH
Confidence            8888875    3347788888866654 788887765

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.10  E-value=0.00032  Score=42.95  Aligned_cols=30  Identities=33%  Similarity=0.697  Sum_probs=19.7

Q ss_pred             hhhhhCCcccccCccccHHHHHHHHHHcCCC
Q 045903          153 KAIVRNPSLLTYDLDKTIKPVVALYEQVGIS  183 (385)
Q Consensus       153 ~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~  183 (385)
                      +++.++|.+|+++ +++++++++||+++|++
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLKELGFS   31 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHHHcCCC
Confidence            4566677777777 45577777777766653

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.01  E-value=0.00063  Score=41.61  Aligned_cols=30  Identities=17%  Similarity=0.388  Sum_probs=25.4

Q ss_pred             HHHHhCCCccccCHHHHHHHHHHHHHhcCCC
Q 045903          257 SLFGRSPLLLTLSVDKVQRNMTFVVGTMKMP  287 (385)
Q Consensus       257 ~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~  287 (385)
                      +++.++|.++++|.++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4678899999999888999999999 58874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=92.62  E-value=3.2  Score=40.79  Aligned_cols=31  Identities=19%  Similarity=0.507  Sum_probs=16.9

Q ss_pred             HHHHHHH-HcCCCHHHHHHHHHhCCCccccCHH
Q 045903          240 EKVANLE-KFGMSEDEIWSLFGRSPLLLTLSVD  271 (385)
Q Consensus       240 ~kv~~L~-~~G~s~~ev~~mv~~~P~lL~~s~e  271 (385)
                      +++..|+ ++|++ ..+..++.+||.|+..|..
T Consensus       262 ~~L~~fr~ef~lp-~k~~~~l~rHPgIFYvS~k  293 (335)
T PF11955_consen  262 DHLTHFRKEFGLP-QKFRRLLLRHPGIFYVSLK  293 (335)
T ss_pred             HHHHHHHHHhCCc-HHHHHHHHhCCCeEEEecc
Confidence            4444444 46665 4555566666666655544

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=92.27  E-value=0.23  Score=44.02  Aligned_cols=51  Identities=16%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             cccccccchHHHHHhhchhccccCCCCCchH--HHHHHHhCCCChHHHHHHHHhC
Q 045903           35 ATYSTICQAEAVVEEITQDQANNYSDNHPKN--STEVLKKWGCSDSDITKLFARR   87 (385)
Q Consensus        35 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~~G~s~~~i~~iv~~~   87 (385)
                      +.|+..|+-.....  ....-+.++.++...  .+..|++.|++-++|..++...
T Consensus        19 RyYe~~GLl~p~~r--~~~gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~   71 (172)
T cd04790          19 LYYERIGLLSPSAR--SESNYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQP   71 (172)
T ss_pred             HHHHHCCCCCCCcc--CCCCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            67888886442111  122234555554443  4677888888888888877654

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=90.95  E-value=2.4  Score=37.59  Aligned_cols=54  Identities=6%  Similarity=0.068  Sum_probs=32.2

Q ss_pred             HHHHHHhCCCChHHHHHHHHhCCCccccCccc--HHHHHHHHHhCCCChHhHHHHHHhCc
Q 045903           66 STEVLKKWGCSDSDITKLFARRPTLQKADALN--LRFKLSVLNELGLNSDDLVKIINCRP  123 (385)
Q Consensus        66 ~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~--l~~~l~~L~~lG~~~~~I~~il~~~P  123 (385)
                      ++.|....|+=...    .+....--.++.+.  -...+..|+++|++-++|..++....
T Consensus        17 tLRyYe~~GLl~p~----~r~~~gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~~   72 (172)
T cd04790          17 TLLYYERIGLLSPS----ARSESNYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQPG   72 (172)
T ss_pred             HHHHHHHCCCCCCC----ccCCCCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Confidence            66677777763211    01111222333332  23777888999999999999887543

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	4e-42
3mva_O	343	Transcription termination factor, mitochondrial; a	9e-31
3mva_O	343	Transcription termination factor, mitochondrial; a	4e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  147 bits (373), Expect = 4e-42
 Identities = 47/264 (17%), Positives = 97/264 (36%), Gaps = 6/264 (2%)

Query: 94  DALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCK 153
           D ++    L  L  LG++   + K        L        ++ + FL  +      L  
Sbjct: 1   DYVDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGA 60

Query: 154 AIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLI-PRTSLNDQKMEYIS 212
            + +N ++ + DL+  +K  VA       S+ D+  M+   P L+       D ++ +  
Sbjct: 61  FLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQ 119

Query: 213 RT---QVSRASKMYKYVVTLIAISRIETIREKVANLEKFGMSEDEIWSLFGRSPLLLTLS 269
           +     V +   +   +  L+  S             + G   +EI  +  R P +LT +
Sbjct: 120 KELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN 179

Query: 270 VDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLP 329
             K+     FV   M +P ++I+++P +    L   +K R L    +      P      
Sbjct: 180 KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYI 238

Query: 330 AILSALRMNEKRFLKVFIHCHPQD 353
           ++   + + ++ F +       QD
Sbjct: 239 SLDKLVSIPDEIFCEEIAKASVQD 262

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  119 bits (299), Expect = 9e-31
 Identities = 50/305 (16%), Positives = 120/305 (39%), Gaps = 25/305 (8%)

Query: 57  NYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLV 116
           +    + ++    L   G S   I  + +R P        NL  +  +  ++  +  ++V
Sbjct: 45  HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIV 104

Query: 117 KIINCRPR-FLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVA 175
            I+   P  F  S  N+  E  + FL  +  +R+ LC+ +   P   +  LD   K +V 
Sbjct: 105 NILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVE 163

Query: 176 LYEQVGIS------RHDLIPMLMSRPTLIPRTSLN-DQKMEYISRTQVSRASKMYKYVVT 228
             +  G+S         +  ++   P ++ +++      +E++  T    + ++   +  
Sbjct: 164 FLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICG 223

Query: 229 L---IAISRIETIREKVANLEKF----GMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVV 281
               I     +  R   AN+++     G +E+E+       P ++ L+  K    +  ++
Sbjct: 224 PGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLM 283

Query: 282 GTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKR 341
               +  + I+E P +L +++   +K R+    ++ + G           ++ L  ++KR
Sbjct: 284 -EENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGCNLSTLN----ITLLSWSKKR 334

Query: 342 FLKVF 346
           +    
Sbjct: 335 YEAKL 339

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  100 bits (251), Expect = 4e-24
 Identities = 54/294 (18%), Positives = 112/294 (38%), Gaps = 24/294 (8%)

Query: 59  SDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKI 118
           +D+ P  + ++LK       DI     R+P +      N +     L   G + + +  I
Sbjct: 12  TDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASI 71

Query: 119 INCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNP-SLLTYDLDKTIKPVVALY 177
           I+  PR ++        +R D   K+  S   +   + R+P S    + +  ++  +   
Sbjct: 72  ISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFL 130

Query: 178 EQVGISRHDLIPMLMSRPTLIPRT-SLNDQKMEYISRTQVSRASKMYKYVVT-------L 229
             VG++R  L  +L + P     +  LN Q +E++    +S         V         
Sbjct: 131 YSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPF 190

Query: 230 IAISRIETIREKVANLEK-FGMSEDEIWSLF-GRSPLLLTLSVDKVQRNMTFVV------ 281
           I I   + ++  +  L   F ++ +E+  L  G    +L LS D  +R+   +       
Sbjct: 191 ILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSL 250

Query: 282 -GTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGL-VPEIKGLPAILS 333
             T +     +L YP ++F   +     ++     + +  + + +I   P +L 
Sbjct: 251 GCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDC---LMEENISISQIIENPRVLD 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 62/479 (12%), Positives = 137/479 (28%), Gaps = 151/479 (31%)

Query: 1   MESKPNPLLKLRFFTSFSKIRPPVQS--LLFITLKSATYSTICQAEAVVEEITQDQANNY 58
           ++  P  +L           +  V     LF TL S     +   +  VEE+ +    NY
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRI---NY 91

Query: 59  SDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKI 118
                        K+         L +   T Q+  ++  R  +   + L  ++    K 
Sbjct: 92  -------------KF---------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 119 INCRPRFLSSRINICFEERVDFLIKLFGSREM-------LCKAIVRNPSLLTY------- 164
              R +          E R    + + G   +       +   +  +  +          
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 165 -------DLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLN-DQKMEYISRTQV 216
                    +  ++ +  L        + + P   SR        L        + R   
Sbjct: 187 LNLKNCNSPETVLEMLQKLL-------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL- 238

Query: 217 SRASKMYK--YVV------------------TLIAISR-------IETIREKVANLEKF- 248
              SK Y+   +V                   L+  +R       +        +L+   
Sbjct: 239 --KSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHS 295

Query: 249 -GMSEDEIWSLFGR----------------SPLLLTLSVDKVQRNMTFVVGTMKMPANVI 291
             ++ DE+ SL  +                +P  L++           +  +++      
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----------IAESIRDGLATW 344

Query: 292 LEYPFLLFNNLEAVMKP--RVLLAAKVQ----DMGLVPEIKGLPA-ILSAL--------- 335
             +  +  + L  +++    VL  A+ +     + + P    +P  +LS +         
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 336 --RMNE--KRFLKVFIHCHPQDAADELMAVY-KTAKGIKRLAATSRK-----NINKGFP 384
              +N+  K  L   +   P+++   + ++Y +    ++   A  R      NI K F 
Sbjct: 405 MVVVNKLHKYSL---VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.96
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.93
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.38
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.53
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	85.81
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	85.57
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	85.4
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	84.17
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	81.57
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	81.01

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=2.1e-49  Score=387.95  Aligned_cols=301  Identities=16%  Similarity=0.258  Sum_probs=266.4

Q ss_pred             ccccccchHHHHHhhchhccccCCCCCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhH
Q 045903           36 TYSTICQAEAVVEEITQDQANNYSDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDL  115 (385)
Q Consensus        36 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I  115 (385)
                      ...++|++...+.+..+. +.+.++++++++++||+++|++++||++++.++|.+|.++++++.|+++||+++|++.++|
T Consensus        25 ~L~s~Gl~~~~~~~~~p~-l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i  103 (343)
T 3mva_O           25 NLLTMGVDIDMARKRQPG-VFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEI  103 (343)
T ss_dssp             HHHHHTCCHHHHHHHCGG-GGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHH
T ss_pred             HHHHcCCCHHHHHHhCch-hhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHH
Confidence            347899998888777665 8889999999999999999999999999999999999999989999999999999999999


Q ss_pred             HHHHHhCccc-cccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCC------hhhHH
Q 045903          116 VKIINCRPRF-LSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGIS------RHDLI  188 (385)
Q Consensus       116 ~~il~~~P~i-L~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~------~~~i~  188 (385)
                      ++++.++|++ ++.+.++++.|+++||+++|++.+++++++.++|++|++++|+ +++++++|+++|++      ++.|.
T Consensus       104 ~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g~~~p~~~I~  182 (343)
T 3mva_O          104 VNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVR  182 (343)
T ss_dssp             HHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcCCCcHHHHHH
Confidence            9999999995 4554435899999999999999999999999999999999987 59999999988774      78999


Q ss_pred             HHHhhCCcccccCC-CChhHHHHHH-hhCCCcch--hhHHH-HHHHHHhCcHHHHHHHHHHHH----HcCCCHHHHHHHH
Q 045903          189 PMLMSRPTLIPRTS-LNDQKMEYIS-RTQVSRAS--KMYKY-VVTLIAISRIETIREKVANLE----KFGMSEDEIWSLF  259 (385)
Q Consensus       189 ~ll~~~P~il~~~~-~~~~kv~~L~-~lG~~~~~--~~~~~-~p~il~~s~~~~l~~kv~~L~----~~G~s~~ev~~mv  259 (385)
                      +++.++|.+++.+. ...++++|+. ++|+++++  .++.. .|.+++.+ .+.|+++++++.    ++||+.+|+..|+
T Consensus       183 ~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~~~lG~s~~ev~~~v  261 (343)
T 3mva_O          183 KIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKLFSLGCTEEEVQKFV  261 (343)
T ss_dssp             HHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            99999999999874 4578899998 59999976  33332 34667776 478999987776    6999999999999


Q ss_pred             HhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhcCCccccCcccccHHHHHHHHHHHHCCCCcccccCCcchhhhcccH
Q 045903          260 GRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNE  339 (385)
Q Consensus       260 ~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~Se  339 (385)
                      .++|++|++|.++++++++||++ ||++.++|+++|++|+||+| ||+|||.+   |+++|+..   . .+..++|++||
T Consensus       262 ~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~---L~~~g~~~---~-~~~~~~l~~s~  332 (343)
T 3mva_O          262 LSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKE---LVNAGCNL---S-TLNITLLSWSK  332 (343)
T ss_dssp             HTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHH---HHTTTCCS---S-SSCGGGGGSCH
T ss_pred             HhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHH---HHHCCCCC---C-CCcchhhcCCH
Confidence            99999999999999999999999 99999999999999999999 99999965   69999853   1 22239999999


Q ss_pred             HhHHHhhcc
Q 045903          340 KRFLKVFIH  348 (385)
Q Consensus       340 ~~F~~~~v~  348 (385)
                      ++|.++|.+
T Consensus       333 ~~F~~~~~~  341 (343)
T 3mva_O          333 KRYEAKLKK  341 (343)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999854

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=4.7e-48  Score=366.42  Aligned_cols=255  Identities=18%  Similarity=0.312  Sum_probs=235.6

Q ss_pred             hHHHHHHHhCCCChHHHHHHHHhCCCccccCcc-cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHH
Q 045903           64 KNSTEVLKKWGCSDSDITKLFARRPTLQKADAL-NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLI  142 (385)
Q Consensus        64 ~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e-~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~  142 (385)
                      +.++++|.++|++.++|.+....+|.+|.++++ ++.++++||+++|++.++|+++++++|++|++++++ +.|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            358999999999999997777777777999997 799999999999999999999999999999999997 999999999


Q ss_pred             hhhcChhhHhhhhhhCCcccccCccccHHHHHHHH-HHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchh
Q 045903          143 KLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALY-EQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASK  221 (385)
Q Consensus       143 ~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L-~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~  221 (385)
                      ++|++++++++++.++|++|++++++ ++++++|| +++|++.+++.+++.++|++++.+                    
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s--------------------  143 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGS--------------------  143 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSC--------------------
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeec--------------------
Confidence            99999999999999999999999985 99999999 589999999999999999999864                    


Q ss_pred             hHHHHHHHHHhCcHHHHHHHHHHH-HHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhcCCcccc
Q 045903          222 MYKYVVTLIAISRIETIREKVANL-EKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFN  300 (385)
Q Consensus       222 ~~~~~p~il~~s~~~~l~~kv~~L-~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~  300 (385)
                                   .+.++++++++ .++||+.+|+.+|+.++|++|++|.++++++++||+++||++.++|+++|++|+|
T Consensus       144 -------------~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~  210 (270)
T 3m66_A          144 -------------LEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNT  210 (270)
T ss_dssp             -------------SHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGS
T ss_pred             -------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhC
Confidence                         26788999976 5899999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccHHHHHHHHHHHHCCCCcccccCCcchhhhcccHHhHHHhhcccCCCCc
Q 045903          301 NLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQDA  354 (385)
Q Consensus       301 Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~Se~~F~~~~v~~~~~~~  354 (385)
                      |+| ||+|||.++++|.++|+.+.-...+++.+++.+||++|+++|++.++||.
T Consensus       211 Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey  263 (270)
T 3m66_A          211 RLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDF  263 (270)
T ss_dssp             CHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHH
T ss_pred             CHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHH
Confidence            999 99999999999999999753112367788999999999999999997653

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=292.82  Aligned_cols=227  Identities=15%  Similarity=0.222  Sum_probs=200.2

Q ss_pred             cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHH
Q 045903           97 NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVAL  176 (385)
Q Consensus        97 ~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~  176 (385)
                      ++...+..|.++|+++++|+++++++|.++..    ++.+.+.||..+|++.++|+++|.++|++|+++++ +|+++++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            47788999999999999999999999999854    47788999999999999999999999999999997 59999999


Q ss_pred             HHHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHHH
Q 045903          177 YEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLE-KFGMSEDEI  255 (385)
Q Consensus       177 L~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~ev  255 (385)
                      |+++|++.+++.+++.++|++|+++                                 .+.+..++.+|. ++||+.++|
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s---------------------------------~e~i~~~v~~L~~~lGfS~~ev  166 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMR---------------------------------QQDINDTVRLLKEKCLFTVQQV  166 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSC---------------------------------HHHHHHHHHHHHHTSCCCHHHH
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccC---------------------------------hHHHHHHHHHHHHHcCCCHHHH
Confidence            9999999999999999999999753                                 367888888886 799999999


Q ss_pred             HHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhcCCccccCcccccHHHHHHHHHHHHCCCCcc----cccCCcc
Q 045903          256 WSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPE----IKGLPAI  331 (385)
Q Consensus       256 ~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~----i~~~~~l  331 (385)
                      ..||.++|+||++|.++|++|++||+++||++.++|++ |++|+||++ ||+|||.+|+.|....+.+.    +...|++
T Consensus       167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL  244 (335)
T 4fp9_B          167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL  244 (335)
T ss_dssp             HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred             HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence            99999999999999999999999999999999999997 999999999 99999999866644322111    1123689


Q ss_pred             hhhhcccHHhHHHhhcccCCCCchHHHHHHHHh
Q 045903          332 LSALRMNEKRFLKVFIHCHPQDAADELMAVYKT  364 (385)
Q Consensus       332 ~~~L~~Se~~F~~~~v~~~~~~~~~~l~~~y~~  364 (385)
                      .+++..||+.|+.++.+.+.++. ..+.+.+.+
T Consensus       245 ~~il~~sd~~F~~~vA~~s~eey-~~F~k~~~~  276 (335)
T 4fp9_B          245 KDILRVSEAEFLARTACTSVEEF-QVFKKLLAR  276 (335)
T ss_dssp             HHHTTSCHHHHHHHTSCCCHHHH-HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhcCHHHH-HHHHHHHHh
Confidence            99999999999999999998875 456666644

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=2.3e-36  Score=295.56  Aligned_cols=277  Identities=16%  Similarity=0.195  Sum_probs=237.8

Q ss_pred             CCCCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHH
Q 045903           59 SDNHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERV  138 (385)
Q Consensus        59 ~~~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v  138 (385)
                      ++..+++++++|.++|++.++   +++.+|.++..++++..++++||+++|++.++|++++.++|++|..+. +++.|++
T Consensus        15 ~~~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l   90 (343)
T 3mva_O           15 EPLKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRW   90 (343)
T ss_dssp             -----CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHH
T ss_pred             CccccHHHHHHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHH
Confidence            456788999999999999665   577899999999999999999999999999999999999999999995 5899999


Q ss_pred             HHHHhhhcChhhHhhhhhhCCcccccCcc-ccHHHHHHHHHHcCCChhhHHHHHhhCCcccccCC-CChhHHHHHHhhCC
Q 045903          139 DFLIKLFGSREMLCKAIVRNPSLLTYDLD-KTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTS-LNDQKMEYISRTQV  216 (385)
Q Consensus       139 ~fL~~~g~~~~~v~~il~~~P~lL~~s~e-~~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~~~-~~~~kv~~L~~lG~  216 (385)
                      +||+++|+++++++++|.++|++|..+.+ ++++|+++||+++|++.++|++++.++|++++.+. ...++++++.++|+
T Consensus        91 ~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv  170 (343)
T 3mva_O           91 DLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGL  170 (343)
T ss_dssp             HHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCC
Confidence            99999999999999999999995544444 48999999999999999999999999999999874 33678899998877


Q ss_pred             C-----cch---hhHHHHHHHHHhCcHHHHHHHHHHHHH-cCCCHHHHHHHHHhCC-CccccCHHHHHHHHHHHHH---h
Q 045903          217 S-----RAS---KMYKYVVTLIAISRIETIREKVANLEK-FGMSEDEIWSLFGRSP-LLLTLSVDKVQRNMTFVVG---T  283 (385)
Q Consensus       217 ~-----~~~---~~~~~~p~il~~s~~~~l~~kv~~L~~-~G~s~~ev~~mv~~~P-~lL~~s~e~l~~k~~fL~~---~  283 (385)
                      +     +.+   .++...|.+++.+ +++++++++||++ +|++.+++..++.+.| .+++++.+.++++++|+.+   +
T Consensus       171 ~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~  249 (343)
T 3mva_O          171 SLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS  249 (343)
T ss_dssp             HTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHT
T ss_pred             CcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHH
Confidence            4     232   5778889999998 7999999999994 9999999999999865 7999999999999999886   6


Q ss_pred             cCCChhhH----hhcCCccccCcccccHHHHHHHHHHHHCCCCcccccCCcchhhhcccHHhHHHhh
Q 045903          284 MKMPANVI----LEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAILSALRMNEKRFLKVF  346 (385)
Q Consensus       284 mg~~~~~i----~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~~~L~~Se~~F~~~~  346 (385)
                      +|++.++|    .++|++|++|.| .|++++.++   .++|+...  .......+|.+|-++-..|+
T Consensus       250 lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl---~~mg~~~~--~i~~~P~~l~~sleri~~R~  310 (343)
T 3mva_O          250 LGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCL---MEENISIS--QIIENPRVLDSSISTLKSRI  310 (343)
T ss_dssp             TTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHH---HTTTCCHH--HHHHSGGGGGSCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHH---HHcCCCHH--HHHhCCHHHhcCHHHHHHHH
Confidence            89998864    789999999999 599999986   44898542  23456788889977877777

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.96  E-value=1.3e-29  Score=239.69  Aligned_cols=210  Identities=18%  Similarity=0.188  Sum_probs=190.0

Q ss_pred             HHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHH
Q 045903           98 LRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALY  177 (385)
Q Consensus        98 l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L  177 (385)
                      =.+.+++|.++|++.++|.+....+|.+|+.++++++.|+++||.++|++++++++++.++|.+|++++|+ ++|+++||
T Consensus         5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            35889999999999999998888888889999999999999999999999999999999999999999998 99999999


Q ss_pred             HHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHH-HHcCCCHHHHH
Q 045903          178 EQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANL-EKFGMSEDEIW  256 (385)
Q Consensus       178 ~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L-~~~G~s~~ev~  256 (385)
                      +++|++.+++++++.++|++|+.+                                 .+++++++++| .++|++.+++.
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s---------------------------------~~~l~~~v~~L~~~lG~~~~~i~  130 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFS---------------------------------VERLDNRLGFFQKELELSVKKTR  130 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSC---------------------------------HHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCC---------------------------------HHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999999999999753                                 25699999999 58999999999


Q ss_pred             HHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhH----hhcCCccccCcccccHHHHHHHHHHHHCCCCcccccCCcch
Q 045903          257 SLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVI----LEYPFLLFNNLEAVMKPRVLLAAKVQDMGLVPEIKGLPAIL  332 (385)
Q Consensus       257 ~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i----~~~P~~L~~Sle~rIkpR~~~l~~L~~~Gl~~~i~~~~~l~  332 (385)
                      +++.++|.++++|.++++++++|+..++|++.++|    .++|++|++|.+ +|+||+.++  ..+.|+...  ......
T Consensus       131 ~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL--~~~mg~~~~--~i~~~P  205 (270)
T 3m66_A          131 DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKM-KLTETFDFV--HNVMSIPHH--IIVKFP  205 (270)
T ss_dssp             HHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHH--HTTSCCCHH--HHHHCG
T ss_pred             HHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHH-HHHHHHHHH--HHHhCCCHH--HHHhCc
Confidence            99999999999999999999999888899998864    689999999996 999999986  367898542  234557


Q ss_pred             hhhcccHHhHHHhh
Q 045903          333 SALRMNEKRFLKVF  346 (385)
Q Consensus       333 ~~L~~Se~~F~~~~  346 (385)
                      .+|.+|-++-..|+
T Consensus       206 ~~l~~Sleri~pR~  219 (270)
T 3m66_A          206 QVFNTRLFKVKERH  219 (270)
T ss_dssp             GGGGSCHHHHHHHH
T ss_pred             hHhhCCHHHHHHHH
Confidence            88889987888876

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.93  E-value=2.1e-25  Score=215.82  Aligned_cols=182  Identities=19%  Similarity=0.265  Sum_probs=168.1

Q ss_pred             CCchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHH
Q 045903           61 NHPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDF  140 (385)
Q Consensus        61 ~~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~f  140 (385)
                      .+++.++..|.++||++++|++++..+|.++   ..++.+++.+|.++|++.++|++||.++|++|+.+++ +|.++++|
T Consensus        44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il---~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           44 LELERVMSSLLDMGFSNAHINELLSVRRGAS---LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCC---HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCHHHHHHHHHhCcccc---hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            3567799999999999999999999999986   3568899999999999999999999999999999986 79999999


Q ss_pred             HHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHH-HcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcc
Q 045903          141 LIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYE-QVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRA  219 (385)
Q Consensus       141 L~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~-~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~  219 (385)
                      |+++|++.+++.+++.++|.+|+++.++ +..++.+|+ ++|++.++|..++.++|++|+.+                  
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S------------------  180 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED------------------  180 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC------------------
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC------------------
Confidence            9999999999999999999999999874 999999986 79999999999999999999753                  


Q ss_pred             hhhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903          220 SKMYKYVVTLIAISRIETIREKVANLE-KFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM  286 (385)
Q Consensus       220 ~~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~  286 (385)
                                     .+.|++|++||. +||++.++|.    + |.+|+||.++|+++..||.. +|.
T Consensus       181 ---------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          181 ---------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             ---------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             ---------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence                           478999999998 7999999985    3 99999999999999999997 787

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.38  E-value=1.8e-11  Score=102.16  Aligned_cols=179  Identities=17%  Similarity=0.277  Sum_probs=149.8

Q ss_pred             hHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHHHcCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhC
Q 045903          136 ERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYEQVGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQ  215 (385)
Q Consensus       136 p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~~lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG  215 (385)
                      ..+.-+.-+|.+++-++-++.+.|.++...+- +++.+-.||+.+|+.+..+.+++--||.++...              
T Consensus        35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmr--------------   99 (239)
T 4fzv_B           35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR--------------   99 (239)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC--------------
T ss_pred             HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHH--------------
Confidence            34445566889999999999999999998876 488899999999999999999999999998742              


Q ss_pred             CCcchhhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCChhhHhhc
Q 045903          216 VSRASKMYKYVVTLIAISRIETIREKVANLE-KFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMPANVILEY  294 (385)
Q Consensus       216 ~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~~~~i~~~  294 (385)
                                         ...+.+.+..|+ ++-|+..++.+++..||.+|.-....+.-++.|-.-.||+..-+|++ 
T Consensus       100 -------------------qqdindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk-  159 (239)
T 4fzv_B          100 -------------------QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-  159 (239)
T ss_dssp             -------------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-
T ss_pred             -------------------HhhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-
Confidence                               245677788888 59999999999999999999999989999999888889999999988 


Q ss_pred             CCccccCcccccHHHHHHHHHHHH------CCCCcccccCCcchhhhcccHHhHHHhhcccCCC
Q 045903          295 PFLLFNNLEAVMKPRVLLAAKVQD------MGLVPEIKGLPAILSALRMNEKRFLKVFIHCHPQ  352 (385)
Q Consensus       295 P~~L~~Sle~rIkpR~~~l~~L~~------~Gl~~~i~~~~~l~~~L~~Se~~F~~~~v~~~~~  352 (385)
                      ..||.||+. .|+.||-+++.|..      +|-. +|.. |-+..+|+.||.+|..+-.+..-+
T Consensus       160 seylqyslt-kikqrhiylerlgryqtpdkkgqt-qipn-pllkdilrvseaeflartactsve  220 (239)
T 4fzv_B          160 SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQT-QIPN-PLLKDILRVSEAEFLARTACTSVE  220 (239)
T ss_dssp             TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCC-SSCC-CCHHHHHTSCHHHHHHHTSCSCHH
T ss_pred             HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCc-cCCC-hHHHHHHHHhHHHHHHHHhcccHH
Confidence            469999999 89999999887743      3432 3433 778999999999999998866544

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.53  E-value=1.5e-06  Score=72.58  Aligned_cols=149  Identities=19%  Similarity=0.268  Sum_probs=119.5

Q ss_pred             cHHHHHHHHHhCCCChHhHHHHHHhCccccccccchhhHhHHHHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHH
Q 045903           97 NLRFKLSVLNELGLNSDDLVKIINCRPRFLSSRINICFEERVDFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVAL  176 (385)
Q Consensus        97 ~l~~~l~~L~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~  176 (385)
                      .+...+.-|.-+|++++-+.-++.+.|++|...+- .+..+-.||..+|...+.+.+++..+|.++++.-. .+...+..
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrl  109 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRL  109 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHH
Confidence            34566777778999999999999999999998876 68889999999999999999999999999999865 49999999


Q ss_pred             HHH-cCCChhhHHHHHhhCCcccccCCCChhHHHHHHhhCCCcchhhHHHHHHHHHhCcHHHHHHHHHHHH-HcCCCHHH
Q 045903          177 YEQ-VGISRHDLIPMLMSRPTLIPRTSLNDQKMEYISRTQVSRASKMYKYVVTLIAISRIETIREKVANLE-KFGMSEDE  254 (385)
Q Consensus       177 L~~-lGl~~~~i~~ll~~~P~il~~~~~~~~kv~~L~~lG~~~~~~~~~~~p~il~~s~~~~l~~kv~~L~-~~G~s~~e  254 (385)
                      |++ |-++..++.+++..||.++..+.                                 ..++-++.+-- ++|+...+
T Consensus       110 lkekclftvqqvtkilhscpsvlredl---------------------------------gqleykfqyayfrmgikhpd  156 (239)
T 4fzv_B          110 LKEKCLFTVQQVTKILHSCPSVLREDL---------------------------------GQLEYKFQYAYFRMGIKHPD  156 (239)
T ss_dssp             HHHHSCCCHHHHHHHHHHCGGGGTSCT---------------------------------THHHHHHHHHHHTSCCCHHH
T ss_pred             HHHhHHhhHHHHHHHHHhCcHHHHHHH---------------------------------hhhhhhHhHHHHHccCCCcc
Confidence            985 88999999999999999986431                                 23444444333 67777777


Q ss_pred             HHHHHHhCCCccccCHHHHHHHHHHHHHhcCC
Q 045903          255 IWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKM  286 (385)
Q Consensus       255 v~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~  286 (385)
                      +.     -...|.||..+++.+--||.. +|.
T Consensus       157 iv-----kseylqysltkikqrhiyler-lgr  182 (239)
T 4fzv_B          157 IV-----KSEYLQYSLTKIKQRHIYLER-LGR  182 (239)
T ss_dssp             HH-----HTTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred             hh-----HHHHHHHHHHHHHHHHhHHHH-hcc
Confidence            63     234577888888888877776 664

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=85.81  E-value=1.6  Score=29.85  Aligned_cols=35  Identities=14%  Similarity=0.315  Sum_probs=23.4

Q ss_pred             HHhCCCccccCcccHHHHHHHHHhCCCChHhHHHHHHh
Q 045903           84 FARRPTLQKADALNLRFKLSVLNELGLNSDDLVKIINC  121 (385)
Q Consensus        84 v~~~P~lL~~~~e~l~~~l~~L~~lG~~~~~I~~il~~  121 (385)
                      +..+|.+-..   .+..+++||++.|++.++|...+.+
T Consensus        19 FL~dp~V~~s---p~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           19 FLQNSRVRQS---PLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHCTTGGGS---CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCChhhhcC---CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            3445655432   2567888888888888888777654

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=85.57  E-value=7.4  Score=31.08  Aligned_cols=39  Identities=5%  Similarity=0.136  Sum_probs=29.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcC
Q 045903          240 EKVANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMK  285 (385)
Q Consensus       240 ~kv~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg  285 (385)
                      +.+.-|.++||+.+++.++++.+       ...+.+.++||....|
T Consensus        78 ~~v~~L~eMGF~~~~a~~AL~~~-------~nd~erAlewL~~~~~  116 (118)
T 4ae4_A           78 QLMSKFKEMGFELKDIKEVLLLH-------NNDQDNALEDLMARAG  116 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHT-------TTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHHhcc
Confidence            56888889999999999998755       2346677888877554

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=85.40  E-value=7.2  Score=31.13  Aligned_cols=97  Identities=9%  Similarity=0.032  Sum_probs=55.4

Q ss_pred             HHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHH------HhCCCChHhHHHHHHhCccccccccchhhHhHH
Q 045903           65 NSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVL------NELGLNSDDLVKIINCRPRFLSSRINICFEERV  138 (385)
Q Consensus        65 ~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L------~~lG~~~~~I~~il~~~P~iL~~~~~~~l~p~v  138 (385)
                      ..++-|.++||+...+.+.+...-.       +....++||      .+.|++..++...+..+..--..  ...-...+
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~g~-------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~~~v   80 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAAGA-------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFLQLM   80 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHCc-------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCHHHH
Confidence            3788999999999999988876531       344445554      35677777776666543210000  00112345


Q ss_pred             HHHHhhhcChhhHhhhhhhCCcccccCccccHHHHHHHHH
Q 045903          139 DFLIKLFGSREMLCKAIVRNPSLLTYDLDKTIKPVVALYE  178 (385)
Q Consensus       139 ~fL~~~g~~~~~v~~il~~~P~lL~~s~e~~l~~~v~~L~  178 (385)
                      .-|.++|++.+.+.+++..+        ++++..-+++|-
T Consensus        81 ~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~  112 (118)
T 4ae4_A           81 SKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM  112 (118)
T ss_dssp             HHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence            55566666666666555443        234555555553

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=84.17  E-value=2.7  Score=40.53  Aligned_cols=42  Identities=10%  Similarity=0.046  Sum_probs=30.7

Q ss_pred             CchHHHHHHHhCCCChHHHHHHHHhCCCccccCcccHHHHHHHHHhCCCC
Q 045903           62 HPKNSTEVLKKWGCSDSDITKLFARRPTLQKADALNLRFKLSVLNELGLN  111 (385)
Q Consensus        62 ~~~~~l~~L~~~G~s~~~i~~iv~~~P~lL~~~~e~l~~~l~~L~~lG~~  111 (385)
                      .-+..|+-|.++||++.++.+.++..-       .+...-++||-+ |++
T Consensus       167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~-------nn~~~A~e~L~~-gip  208 (368)
T 1oqy_A          167 EYETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT-GIP  208 (368)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSC-------SSTTHHHHTTTT-SST
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHh-CCC
Confidence            455689999999999999999987642       245566777753 343

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=81.57  E-value=1.8  Score=29.69  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHh
Q 045903          236 ETIREKVANLEKFGMSEDEIWSLFGR  261 (385)
Q Consensus       236 ~~l~~kv~~L~~~G~s~~ev~~mv~~  261 (385)
                      ..+..|++||++-|++.+||..++.+
T Consensus        28 sp~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           28 SPLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             SCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            56889999999999999999999876

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=81.01  E-value=1.3  Score=30.24  Aligned_cols=39  Identities=10%  Similarity=0.233  Sum_probs=20.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHhCCCccccCHHHHHHHHHHHHHhcCCC
Q 045903          242 VANLEKFGMSEDEIWSLFGRSPLLLTLSVDKVQRNMTFVVGTMKMP  287 (385)
Q Consensus       242 v~~L~~~G~s~~ev~~mv~~~P~lL~~s~e~l~~k~~fL~~~mg~~  287 (385)
                      ++-|.++||+.+.+..++++      .+...|++.++||.+ |+++
T Consensus        13 lq~L~eMGFd~erae~Alk~------Tg~~Gle~AmewL~k-~~~~   51 (54)
T 2cos_A           13 LQELVNAGCDQEMAGRALKQ------TGSRSIEAALEYISK-MSGP   51 (54)
T ss_dssp             HHHHHHHHCCHHHHHHHHHH------HTSCCHHHHHHHHHH-HSCS
T ss_pred             HHHHHHcCCCHHHHHHHHHH------hCcccHHHHHHHHHH-hcCC
Confidence            45555666666555555542      111236666666665 5554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00