Citrus Sinensis ID: 045909
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 268 | ||||||
| 356546130 | 468 | PREDICTED: probable glycosyltransferase | 0.675 | 0.386 | 0.619 | 1e-60 | |
| 356565153 | 398 | PREDICTED: probable glycosyltransferase | 0.600 | 0.404 | 0.666 | 6e-60 | |
| 359484716 | 477 | PREDICTED: probable glycosyltransferase | 0.910 | 0.511 | 0.509 | 7e-59 | |
| 357478279 | 617 | Xylogalacturonan beta-1,3-xylosyltransfe | 0.626 | 0.272 | 0.621 | 1e-58 | |
| 356546126 | 490 | PREDICTED: xylogalacturonan beta-1,3-xyl | 0.929 | 0.508 | 0.476 | 2e-57 | |
| 449443279 | 447 | PREDICTED: probable glycosyltransferase | 0.574 | 0.344 | 0.598 | 8e-56 | |
| 356565155 | 496 | PREDICTED: xylogalacturonan beta-1,3-xyl | 0.600 | 0.324 | 0.605 | 9e-56 | |
| 334187794 | 458 | Exostosin family protein [Arabidopsis th | 0.705 | 0.412 | 0.518 | 2e-54 | |
| 292630785 | 466 | RecName: Full=Probable glycosyltransfera | 0.705 | 0.405 | 0.518 | 2e-54 | |
| 297818734 | 422 | exostosin family protein [Arabidopsis ly | 0.593 | 0.376 | 0.605 | 2e-54 |
| >gi|356546130|ref|XP_003541484.1| PREDICTED: probable glycosyltransferase At5g20260-like [Glycine max] | Back alignment and taxonomy information |
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Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/189 (61%), Positives = 145/189 (76%), Gaps = 8/189 (4%)
Query: 72 LATALYNSSINKFYKARSIRV-EEDLAQARAAIRKAIHLQNYTSHSHRTETFIPTGSIYK 130
LA + Y S ++ K S V EE LA+ARA+IR+AI +N+ S+S + E FIP GSIY+
Sbjct: 59 LANSAYRSLEHRIKKRTSFDVVEEGLAKARASIREAILSRNH-SNSGKQEDFIPKGSIYR 117
Query: 131 NA-----SHTEMVKKFKVWIYKEGEHPTVHIGPMHNKYAIEGQFIDEME-SKNNPFRASH 184
N SH EMVK+FKVW+Y+EG+ P VH GP+++ YAIEGQFIDEM+ SK +PF+A +
Sbjct: 118 NPHAFHQSHIEMVKRFKVWVYEEGDQPLVHYGPVNDIYAIEGQFIDEMDNSKRSPFKAKN 177
Query: 185 PDEAHAFFLPFSVANVVQYVYQPITTVKDYSRDRLQRLLTDYVTVVADKYPYWNRSNGAD 244
PDEAHAFFLPFSV NVV Y Y+P + DY RDRLQRL+ DY+ VVADKYPYWNRSNGAD
Sbjct: 178 PDEAHAFFLPFSVVNVVHYAYKPYMSQNDYRRDRLQRLVEDYIVVVADKYPYWNRSNGAD 237
Query: 245 HFMVSCHDW 253
HF++SCHDW
Sbjct: 238 HFLLSCHDW 246
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565153|ref|XP_003550809.1| PREDICTED: probable glycosyltransferase At5g20260-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|359484716|ref|XP_002263848.2| PREDICTED: probable glycosyltransferase At5g20260-like [Vitis vinifera] gi|296084516|emb|CBI25537.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357478279|ref|XP_003609425.1| Xylogalacturonan beta-1,3-xylosyltransferase [Medicago truncatula] gi|355510480|gb|AES91622.1| Xylogalacturonan beta-1,3-xylosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356546126|ref|XP_003541482.1| PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449443279|ref|XP_004139407.1| PREDICTED: probable glycosyltransferase At3g42180-like [Cucumis sativus] gi|449494024|ref|XP_004159425.1| PREDICTED: probable glycosyltransferase At3g42180-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356565155|ref|XP_003550810.1| PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|334187794|ref|NP_197526.5| Exostosin family protein [Arabidopsis thaliana] gi|332005439|gb|AED92822.1| Exostosin family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|292630785|sp|Q3E9A4.3|GLYT5_ARATH RecName: Full=Probable glycosyltransferase At5g20260 | Back alignment and taxonomy information |
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| >gi|297818734|ref|XP_002877250.1| exostosin family protein [Arabidopsis lyrata subsp. lyrata] gi|297323088|gb|EFH53509.1| exostosin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 268 | ||||||
| TAIR|locus:2100814 | 470 | AT3G42180 "AT3G42180" [Arabido | 0.791 | 0.451 | 0.506 | 8.9e-54 | |
| TAIR|locus:2145924 | 500 | XGD1 "AT5G33290" [Arabidopsis | 0.600 | 0.322 | 0.540 | 1.3e-45 | |
| TAIR|locus:1009023450 | 518 | AT5G03795 [Arabidopsis thalian | 0.570 | 0.295 | 0.446 | 4.6e-34 | |
| TAIR|locus:2091122 | 470 | AT3G07620 "AT3G07620" [Arabido | 0.615 | 0.351 | 0.417 | 7.4e-34 | |
| TAIR|locus:2145472 | 480 | AT5G25310 "AT5G25310" [Arabido | 0.570 | 0.318 | 0.437 | 9.5e-34 | |
| TAIR|locus:2145254 | 654 | AT5G25820 "AT5G25820" [Arabido | 0.451 | 0.185 | 0.421 | 6.9e-22 | |
| TAIR|locus:2125687 | 593 | AT4G32790 "AT4G32790" [Arabido | 0.585 | 0.264 | 0.337 | 1.4e-20 | |
| TAIR|locus:2144231 | 546 | AT5G11610 "AT5G11610" [Arabido | 0.634 | 0.311 | 0.333 | 1.9e-20 | |
| TAIR|locus:2152632 | 547 | AT5G37000 "AT5G37000" [Arabido | 0.429 | 0.210 | 0.396 | 1.3e-18 | |
| TAIR|locus:2120933 | 425 | AT4G38040 "AT4G38040" [Arabido | 0.705 | 0.444 | 0.288 | 2.9e-16 |
| TAIR|locus:2100814 AT3G42180 "AT3G42180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 114/225 (50%), Positives = 146/225 (64%)
Query: 41 FSTFETRNVRVAQFFINAXXXXX---XXXXXXXXLATALYNSSINKFYKARSIRVEEDLA 97
FS+F QFF + +++LY+ I ++ + EE+L
Sbjct: 27 FSSFPNNESPPQQFFSSLTMSSLLVHTNALQSSSSSSSLYSPPITVKRRSNLEKREEELR 86
Query: 98 QARAAIRKAIHLQNYTSHSHRTETFIPTGSIYKNA-----SHTEMVKKFKVWIYKEGEHP 152
+ARAAIR+A+ +N TS+ T+IPTG IY+N+ SH EM+K FKVW YKEGE P
Sbjct: 87 KARAAIRRAVRFKNCTSNEE-VITYIPTGQIYRNSFAFHQSHIEMMKTFKVWSYKEGEQP 145
Query: 153 TVHIGPMHNKYAIEGQFIDE----MESKNNPFRASHPDEAHAFFLPFSVANVVQYVYQPI 208
VH GP+++ Y IEGQFIDE M + FRAS P+EAHAFFLPFSVAN+V YVYQPI
Sbjct: 146 LVHDGPVNDIYGIEGQFIDELSYVMGGPSGRFRASRPEEAHAFFLPFSVANIVHYVYQPI 205
Query: 209 TTVKDYSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVSCHDW 253
T+ D++R RL R+ DYV VVA K+P+WN+SNGADHFMVSCHDW
Sbjct: 206 TSPADFNRARLHRIFNDYVDVVAHKHPFWNQSNGADHFMVSCHDW 250
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| TAIR|locus:2145924 XGD1 "AT5G33290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:1009023450 AT5G03795 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091122 AT3G07620 "AT3G07620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2145472 AT5G25310 "AT5G25310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2145254 AT5G25820 "AT5G25820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2125687 AT4G32790 "AT4G32790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2144231 AT5G11610 "AT5G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2152632 AT5G37000 "AT5G37000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2120933 AT4G38040 "AT4G38040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 268 | |||
| pfam03016 | 292 | pfam03016, Exostosin, Exostosin family | 5e-15 |
| >gnl|CDD|217320 pfam03016, Exostosin, Exostosin family | Back alignment and domain information |
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Score = 72.9 bits (179), Expect = 5e-15
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 21/135 (15%)
Query: 137 MVKKFKVWIY-------KEGEHPTVHIGPMHNKYAIEGQFIDEMESKNNPFRASHPDEAH 189
K KV++Y + + ++YA E + N+ R PDEA
Sbjct: 1 SCKGLKVYVYDLPRRFNLLEDVLPETSWYLTHQYAAESILHKSIL--NSRCRTLDPDEAD 58
Query: 190 AFFLPFSVANVVQYVYQPITTVKDYSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVS 249
FF+PF + V RD L L +++ PYWNRS G DH +V+
Sbjct: 59 LFFVPFYTSL---SVGTNAV-----ERDLLPSELVEWLE----SLPYWNRSGGRDHIIVN 106
Query: 250 CHDWVSTYIYVLLNL 264
H + + L L
Sbjct: 107 SHPFGGSAFDRLPAL 121
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The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. Length = 292 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 268 | |||
| KOG1021 | 464 | consensus Acetylglucosaminyltransferase EXT1/exost | 99.93 | |
| PF03016 | 302 | Exostosin: Exostosin family; InterPro: IPR004263 H | 99.89 | |
| KOG2264 | 907 | consensus Exostosin EXT1L [Signal transduction mec | 84.62 |
| >KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
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Probab=99.93 E-value=2.6e-26 Score=224.47 Aligned_cols=123 Identities=37% Similarity=0.652 Sum_probs=108.3
Q ss_pred ChHHhhccCeEEEecCCCCCccccC--CCCCCchhHHHHHHHHhhcCCCcccCCcCCcceEEEeeecceee-eeeecccc
Q 045909 133 SHTEMVKKFKVWIYKEGEHPTVHIG--PMHNKYAIEGQFIDEMESKNNPFRASHPDEAHAFFLPFSVANVV-QYVYQPIT 209 (268)
Q Consensus 133 sY~eMe~~lKIYVY~eg~~p~~h~~--p~~~iYssEg~F~~eL~~~~s~fRT~DPeeAhlFFVPfs~~~l~-~~ly~p~~ 209 (268)
+|..|++.+|+|+|.+|+.+.+|.+ +++++|+.|++|+..|+.+.++|||.||+|||+||||||+++.+ ++++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~ 186 (464)
T KOG1021|consen 107 SYKLNEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDE 186 (464)
T ss_pred hhhhhcccCceEEecCCCCccccCCCcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhcccCCc
Confidence 9999999999999999988899987 78999999999999997435789999999999999999999876 66677653
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhcCcccccCCCCceEEEccCCchhhHHH
Q 045909 210 TVKDYSRDRLQRLLTDYVTVVADKYPYWNRSNGADHFMVSCHDWVSTYIY 259 (268)
Q Consensus 210 ~~~~~~~~~L~~~l~dyV~~Ia~kyPyWNRS~GaDHF~VscHDwG~~~~~ 259 (268)
. ....+...+.+||..+.++||||||++|+|||+|+|||||.+...
T Consensus 187 ~----~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~ 232 (464)
T KOG1021|consen 187 R----VNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRR 232 (464)
T ss_pred c----cchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeec
Confidence 2 334567778888888889999999999999999999999998874
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| >PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses [] | Back alignment and domain information |
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| >KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00