Citrus Sinensis ID: 045919

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDDLRYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDDDRGGEKKRNLNSDNENSNSFMVPTEEKGKEMNENNNGHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ
Secondary Structure (PSIPRED)
ccEEEccccccHHHHHHHHHccccEEEEcccccHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHccHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHcHccccEEEEEccccccEEEHHHHccHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHEEEEcccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHcc
Coil and Loop (DISEMBL)
manvdisnidsLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFflekpisfddlkyVWQHSYIYkrrskiqledarkPEQEILLNrgnisqgkrineggddvsrnianasatddlRYSINAdqneknnkqMEVDAQVhifdensvkesqNACNMEQHLVMANDQIQEQGgliktkrsldddrggekkrnlnsdnensnsfmvpteekgkemnennnghvkkkrkprivwtSELHLKFIEAVSslgdikarPKLILQkmnvpgltQRQVASHLQ
Flexible Loop (DISEMBL)
manvdisnidslsfVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEkpisfddlKYVWQHSYIYKrrskiqledarKPEQEillnrgnisqgkrineggddvsRNIANasatddlrySINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLiktkrsldddrggekkrnlnsdnensnsfmvpteekgkemnennnghvkkkrkprivWTSELHLKFIEAVSSLGDIKARPKLILQkmnvpgltqRQVASHLQ
Low Complexity Region (SEG)
MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDDLRYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDDDRGGEKKRNLNSDNENSNSFMVPTeekgkemnennngHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ
Disordered region (IsUnstruct)
*****ISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKI***********************************************************************************************************************************************************RIVWTSELHLKFIEAVSSLGDIKARPKLILQKM***************
Disordered Region (DISOPRED)
MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKI**************************EGGDDVSRNIANASATDDLRYSINADQNEKNNKQMEVDAQVHIFDEN*****QNA**********************************************************************KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHL*
Disordered Region (DISEMBL)
MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDDLRYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKR***********RNLNSDNENSNSFMVPTEEKGKEMNENNNGHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLT*********
Disordered Region (DISPRO)
**NVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR**************************************************************KQMEVDAQVHIFDENSVKESQ*************************************************************************RKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLT*RQV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDDLRYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDDDRGGEKKRNLNSDNENSNSFMVPTEEKGKEMNENNNGHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q6LA43	535	Two-component response re	yes	no	0.873	0.452	0.277	6e-13
Q940D0	690	Two-component response re	no	no	0.241	0.097	0.507	2e-12
Q9ZWJ9	664	Two-component response re	no	no	0.480	0.200	0.342	6e-12
Q9FGT7	635	Two-component response re	no	no	0.227	0.099	0.5	5e-10
Q8L9Y3	382	Two-component response re	no	no	0.184	0.133	0.588	1e-09
Q9M9B9	407	Putative two-component re	no	no	0.194	0.132	0.551	1e-09
O49397	552	Two-component response re	no	no	0.212	0.106	0.533	2e-09
Q7Y0W3	341	Two-component response re	N/A	no	0.263	0.214	0.460	4e-09
Q7Y0W5	341	Two-component response re	no	no	0.263	0.214	0.460	4e-09
Q9FFH0	386	Transcription activator G	no	no	0.187	0.134	0.576	6e-09

>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 46/288 (15%)

Query: 10  DSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69
           +S  F+    K+ +P I++S+      + + +  GA  FL+KP+S + LK +WQH  ++K
Sbjct: 84  ESFKFLEA-AKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNIWQH-VVHK 141

Query: 70  R----RSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDDLRYSINA 125
                 S + +  + KP +E +++  ++     I E           A +T  L+     
Sbjct: 142 AFNDGGSNVSI--SLKPVKESVVSMLHLETDMTIEEKDP--------APSTPQLK----- 186

Query: 126 DQNEKNNKQMEVDAQVHI-FDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDD 184
               ++++ ++ D Q +I F   +V  S    NME H       I E   +  T R LDD
Sbjct: 187 ----QDSRLLDGDCQENINFSMENVNSSTEKDNMEDH-----QDIGESKSVDTTNRKLDD 237

Query: 185 DRGGEKKRNLNSD-----------NENSNSFMV-PTEEKGKEMNENN---NGHVKKKRKP 229
           D+   K+   +S+           +E ++S  +   E++ K +N+++   N    K  + 
Sbjct: 238 DKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRK 297

Query: 230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           ++ WT ELH KF++AV  LG  +A P  IL+ M V  LT+  VASHLQ
Sbjct: 298 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQ 345

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.
Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query: 209 EEKGKEMNENNNGHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLT 268
           +E+G+E  ++ +      +KPR+VW+ ELH +F+ AV+ LG  KA PK IL+ MNVPGLT
Sbjct: 218 DEEGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLT 277

Query: 269 QRQVASHLQ 277
           +  VASHLQ
Sbjct: 278 RENVASHLQ 286

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 16/149 (10%)

Query: 133 KQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDDDRGGEKKR 192
           K + ++A  +I+ ++ V++ +N  N+ +H   +   I++ GG        D DR  + + 
Sbjct: 129 KPVRIEALKNIW-QHVVRKKRNEWNVSEH---SGGSIEDTGG--------DRDRQQQHRE 176

Query: 193 NLNSDNENSNSFMVPTEEKGKEMNENNNGHVKKK----RKPRIVWTSELHLKFIEAVSSL 248
           + ++++ + N     +  K KE   ++ G  K+     +KPR+VW+ ELH +F+ AV+ L
Sbjct: 177 DADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQL 236

Query: 249 GDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           G  KA PK IL+ MNVPGLT+  VASHLQ
Sbjct: 237 GVDKAVPKKILEMMNVPGLTRENVASHLQ 265

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 212 GKEMNENNNGHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQ 271
           G E + + +G    ++KPR+VW+ ELH KF+ AV  LG  KA PK IL  M++ GLT+  
Sbjct: 181 GSEQDGDGSG---TRKKPRVVWSQELHQKFVSAVQQLGLDKAVPKKILDLMSIEGLTREN 237

Query: 272 VASHLQ 277
           VASHLQ
Sbjct: 238 VASHLQ 243

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 227 RKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           +K R+VW+ ELH +F+ AV+ LG  KA PK IL+ MNVPGL++  VASHLQ
Sbjct: 199 KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQ 249

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis thaliana GN=ARR19 PE=2 SV=2

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 4/58 (6%)

Query: 224 KKKRKPRIVWTSELHLKFIEAVSSLGDI-KARPKLI---LQKMNVPGLTQRQVASHLQ 277
           KK RKPR+ WT ELH KF+EA+  +G I KA PK++   LQ+M + G+T+  VASHLQ
Sbjct: 211 KKPRKPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQ 268

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 40/60 (66%)

Query: 218 NNNGHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           N+N     ++KPR++WT ELH KF+ AV  LG  +A PK IL  MNV  LT+  VASHLQ
Sbjct: 173 NDNDDPTAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 232

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 205 MVPTEEKGKEMNENNNGHVKKKR---KPRIVWTSELHLKFIEAVSSLGDIKARPKLILQK 261
           + P E + ++   N NG +   R   K R+ WT++LH +FI AV+ LG+ KA PK IL  
Sbjct: 172 LAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGI 231

Query: 262 MNVPGLTQRQVASHLQ 277
           M V  LT+ QVASHLQ
Sbjct: 232 MKVKHLTREQVASHLQ 247

Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 205 MVPTEEKGKEMNENNNGHVKKKR---KPRIVWTSELHLKFIEAVSSLGDIKARPKLILQK 261
           + P E + ++   N NG +   R   K R+ WT++LH +FI AV+ LG+ KA PK IL  
Sbjct: 172 LAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGI 231

Query: 262 MNVPGLTQRQVASHLQ 277
           M V  LT+ QVASHLQ
Sbjct: 232 MKVKHLTREQVASHLQ 247

Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates HD3A and other FT-like genes independently from HD1. May also activate MADS-box transcription factors involved in flowering regulation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 37/52 (71%)

Query: 226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           K+KP++ WT ELH KF++AV  LG  KA P  IL+ MNV  LT+  VASHLQ
Sbjct: 145 KKKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQ 196

Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
449503419	557	PREDICTED: uncharacterized protein LOC10	0.837	0.416	0.342	4e-27
449458817	607	PREDICTED: uncharacterized protein LOC10	0.837	0.382	0.342	4e-27
297737760	500	unnamed protein product [Vitis vinifera]	0.844	0.468	0.334	2e-18
224108401	295	predicted protein [Populus trichocarpa]	0.787	0.738	0.297	7e-16
255570679	549	hypothetical protein RCOM_0577360 [Ricin	0.184	0.092	0.725	7e-14
224138036	448	pseudo response regulator [Populus trich	0.967	0.598	0.286	2e-13
326515596	580	predicted protein [Hordeum vulgare subsp	0.685	0.327	0.248	3e-13
168009967	193	predicted protein [Physcomitrella patens	0.487	0.699	0.335	2e-12
356540587	570	PREDICTED: two-component response regula	0.978	0.475	0.300	1e-11
225427316	557	PREDICTED: two-component response regula	0.967	0.481	0.262	1e-11

>gi|449503419|ref|XP_004161993.1| PREDICTED: uncharacterized protein LOC101230585 [Cucumis sativus]

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 141/286 (49%), Gaps = 54/286 (18%)

Query: 1   MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKY 60
           MANV + ++DS SF+ VL+K  I +I MSS  N   + +AL EGAC+FL+KPIS  DLKY
Sbjct: 74  MANVSMPDMDSFSFLHVLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKPISRGDLKY 133

Query: 61  VWQHSY-----IYKRRSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASA 115
           +WQH Y     I K+  K    +  KP +E        S G +I +    +SR+ A  S 
Sbjct: 134 MWQHVYRWNRNITKQTYKANCIETAKPRKE--------SVGIQITDAV-VLSRSAAAVS- 183

Query: 116 TDDLRYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGL 175
                Y+ N   N K  +  E D  V I   +S+                       G  
Sbjct: 184 -----YNNNCCINYKPMENKEKDKSVQIGSHDSL----------------------VGSF 216

Query: 176 IKTKRSLDDDRGGEKKRNLNSDNENSNSFMVPTEEKGKEMNENN----NGHVKKKRKPRI 231
              KR  DD  G  +++ +   +E       PT+     ++E++      ++    + R+
Sbjct: 217 FGGKRLSDDIEGISREKRVKYYSE-------PTKFGFSRIDEDHERRKEYYIASDSRTRV 269

Query: 232 VWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           VW +E   KF +A++ LGD K+RPKLIL+ MN P LT RQVA+HLQ
Sbjct: 270 VWNAERRRKFTDALNKLGD-KSRPKLILKMMNEPCLTLRQVANHLQ 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458817|ref|XP_004147143.1| PREDICTED: uncharacterized protein LOC101203501 [Cucumis sativus]

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 141/286 (49%), Gaps = 54/286 (18%)

Query: 1   MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKY 60
           MANV + ++DS SF+ VL+K  I +I MSS  N   + +AL EGAC+FL+KPIS  DLKY
Sbjct: 74  MANVSMPDMDSFSFLHVLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKPISRGDLKY 133

Query: 61  VWQHSY-----IYKRRSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASA 115
           +WQH Y     I K+  K    +  KP +E        S G +I +    +SR+ A  S 
Sbjct: 134 MWQHVYRWNRNITKQTYKANCIETAKPRKE--------SVGIQITDAV-VLSRSAAAVS- 183

Query: 116 TDDLRYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGL 175
                Y+ N   N K  +  E D  V I   +S+                       G  
Sbjct: 184 -----YNNNCCINYKPMENKEKDKSVQIGSHDSLV----------------------GSF 216

Query: 176 IKTKRSLDDDRGGEKKRNLNSDNENSNSFMVPTEEKGKEMNENN----NGHVKKKRKPRI 231
              KR  DD  G  +++ +   +E       PT+     ++E++      ++    + R+
Sbjct: 217 FGGKRLSDDIEGISREKRVKYYSE-------PTKFGFSRIDEDHERRKEYYIASDSRTRV 269

Query: 232 VWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           VW +E   KF +A++ LGD K+RPKLIL+ MN P LT RQVA+HLQ
Sbjct: 270 VWNAERRRKFTDALNKLGD-KSRPKLILKMMNEPCLTLRQVANHLQ 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737760|emb|CBI26961.3| unnamed protein product [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 134/257 (52%), Gaps = 23/257 (8%)

Query: 27  LMSSR-RNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQLEDARKPEQE 85
           +MSSR   +I + +AL  GACFFL+KP+S +DL+ +WQH Y  +R S+   E ++    +
Sbjct: 4   MMSSRYPGKIVAEQALRNGACFFLQKPVSDNDLRDLWQHVYRKRRSSEFPKERSKSQGVK 63

Query: 86  ILLNRGNISQGKRINEGGDDVSRNIANASATDDLRYSINADQN----EKNNKQMEVDAQV 141
           I     +  +     E G  VSR  +  +  +DL +  N +Q     +  NKQ++ D+ +
Sbjct: 64  IKEESASAFRNDWFREVGS-VSRTNSRTANENDL-HGTNHEQWIADLKGKNKQIKPDSGL 121

Query: 142 HIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDDDRGGEK-KRNLNSDNEN 200
              D  + +         + L MA DQ   + G    KRS +D+    K KR + S+  +
Sbjct: 122 VKGDAQTTER--------ELLRMAADQ---KPGCNDRKRSNEDNTEKRKCKRKIYSEQIH 170

Query: 201 SNSFMVPTEEKGKEMNENNNGHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQ 260
           S   + P EE G E  + ++   K++    + WT +LH KF EA+  LG+ KA PK IL+
Sbjct: 171 SQG-ISPIEEDGNEKKQKSSTLEKRQC---MRWTPDLHFKFTEAIRKLGEKKASPKAILE 226

Query: 261 KMNVPGLTQRQVASHLQ 277
            M VP L Q  ++SHLQ
Sbjct: 227 LMKVPDLRQGHISSHLQ 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108401|ref|XP_002314834.1| predicted protein [Populus trichocarpa] gi|222863874|gb|EEF01005.1| predicted protein [Populus trichocarpa]

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 142/303 (46%), Gaps = 85/303 (28%)

Query: 44  GACFFLEKPISFDDLKYVWQHSYIYKRRSKIQLEDARKPEQEILLNRGNISQGKRI-NEG 102
           GA   L+KPIS  DLKY+WQ  Y++++ +  +++          +N   ISQG  + +EG
Sbjct: 4   GASLCLDKPISLYDLKYLWQ--YVFEKTTICRVK----------VNFRKISQGIVVKDEG 51

Query: 103 GD---------DVSRNIANASAT-----------DDL----------------------R 120
           G+         D +    N +A            +DL                      R
Sbjct: 52  GETEVPDGIVLDGAAGYQNDTAPSSKGNGQVVGFEDLDATNRQQTIAGLEVEVEEDGASR 111

Query: 121 YSINADQNEKNNKQME------VDAQVHIFDENSVKESQN-ACNMEQHLVMANDQIQEQG 173
             + AD   K N  +E         QV +  EN  K++++ A  M    V+A  Q Q++ 
Sbjct: 112 LQMKADPKGKANDSVEDTREEKWSEQVAVMKENFTKDAESTAIEMS---VLAEIQEQDES 168

Query: 174 GLIKT------KRSLDDDRGGE-KKRNLNSDNENSNSFMVPTEEKGKEMNENNNGHVKKK 226
            + ++      KR  D D G   K+R + +++E  +S      EK KE+ E N G   ++
Sbjct: 169 VITRSQQQSGSKRPTDGDEGRRNKERRVEANSEIISSGTKINLEKQKEI-EGNKGEGTER 227

Query: 227 ------------RKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVAS 274
                       ++PR++W  +L LKF+ A+S+LGD KARP+ IL+KM+VP L+QRQV+S
Sbjct: 228 FKNYINTDSSTEKRPRLIWNQDLQLKFMSAISALGDKKARPEKILEKMDVPCLSQRQVSS 287

Query: 275 HLQ 277
            LQ
Sbjct: 288 RLQ 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570679|ref|XP_002526294.1| hypothetical protein RCOM_0577360 [Ricinus communis] gi|223534375|gb|EEF36083.1| hypothetical protein RCOM_0577360 [Ricinus communis]

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query: 227 RKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           R+ R++WT ELHLKF  A+S+LGD KARPK IL+ MNVP LTQRQVASHLQ
Sbjct: 205 RRSRVLWTPELHLKFTAAISALGDKKARPKPILEMMNVPHLTQRQVASHLQ 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138036|ref|XP_002326502.1| pseudo response regulator [Populus trichocarpa] gi|222833824|gb|EEE72301.1| pseudo response regulator [Populus trichocarpa]

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 133/286 (46%), Gaps = 18/286 (6%)

Query: 1   MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKY 60
           +  V +SN  S SF  +   +++P I+ SS        + +  GA  FL KP+S D L+ 
Sbjct: 68  IVEVSMSN-SSRSFKFLETSKDLPTIMTSSIDCLNTMMKCIALGAVEFLRKPLSEDKLRN 126

Query: 61  VWQHSY--IYKRRSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDD 118
           +WQH     +     +Q   + KP ++ +++   +  G   NE  +        A +T  
Sbjct: 127 IWQHVVHKAFNAGGSVQ-SKSLKPVKDSVVSMLELKDGLEENENKNMEKTENYPAPSTPQ 185

Query: 119 L----RYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGG 174
           L    R   + D  +  N  +E ++   +  E   K  +  C M +  + A D       
Sbjct: 186 LKQGERLLDDGDCQDHINCLIEKES---VEQEGDSKSVETTCAMSEETLQAGDPQSFTET 242

Query: 175 LIKTKRSLDDDRGGEKKRN---LNSDNENSNSFMVPTEEKGKEMNENNNGHVKKKRKPRI 231
           +IK +   DD   G K  N    NS N+++ +      EK   ++ N++G    ++K ++
Sbjct: 243 VIKEE---DDSTDGVKSENNMCPNSQNKDTLNHSNGCAEKASSLH-NSHGTRANRKKMKV 298

Query: 232 VWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
            WT ELH KF++AV  LG  +A P  IL+ M V GLT+  VASHLQ
Sbjct: 299 DWTPELHRKFVQAVEKLGVDQAIPSRILEVMKVEGLTRHNVASHLQ 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326515596|dbj|BAK07044.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 88/278 (31%)

Query: 1   MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLK 59
           +++V + ++D    + ++  E ++P+I++S         + +  GAC +L KP+  ++LK
Sbjct: 74  ISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRIEELK 133

Query: 60  YVWQHSYIYKRRSKIQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDDL 119
            +WQH  + +R+                                                
Sbjct: 134 NIWQH--VVRRKFST--------------------------------------------- 146

Query: 120 RYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTK 179
           R S+NAD  E+ NK    D+  +++D+                             +K  
Sbjct: 147 RDSLNADMYEECNKPPSSDSD-YLYDQ-----------------------------VKCG 176

Query: 180 RSLDDDRGGEKKRNLNSDNENSNSFMVPTEEKGKEMNENNNGHVKKKRKPRIVWTSELHL 239
            S+   R  +K++  +S+ E         +E G    ++N+     KR PR+VW+ ELH 
Sbjct: 177 SSVQSGRPNKKRKEYHSEEE---------DEDGDSSGQDNDDPSAPKR-PRVVWSVELHR 226

Query: 240 KFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           KF+ AV+ LG  KA PK IL+ MNV  LT+  VASHLQ
Sbjct: 227 KFVTAVNHLGIDKAVPKRILELMNVEKLTRENVASHLQ 264

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168009967|ref|XP_001757676.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690952|gb|EDQ77316.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 17/152 (11%)

Query: 131 NNKQMEVDAQVHIFDENSVKESQNA-CNMEQHLVMANDQIQEQGGLIKTKRSLDDDRGGE 189
           ++K ++  A V  F    V     A  + E H    + Q+Q       T  S +  +GG 
Sbjct: 21  SSKSLKSSAMVSCFSIQPVSSKSTADLSRESHASFLDLQVQRS-----TPMSFNPSKGGG 75

Query: 190 KKRNL----NSDNENSNSFMVPTEEKGKEMNENNNGHVKKKRKPRIVWTSELHLKFIEAV 245
             +N     +SD E+       T+  G  +N N   + +  ++PR+VWT +LH +F++AV
Sbjct: 76  SAKNARKLADSDFED-------TDSGGGPVNSNEEANARTLKRPRLVWTPQLHKRFVDAV 128

Query: 246 SSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
             LG   A PK I+Q MNV GLT+  VASHLQ
Sbjct: 129 GHLGIKNAVPKTIMQLMNVEGLTRENVASHLQ 160

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540587|ref|XP_003538769.1| PREDICTED: two-component response regulator-like APRR2-like [Glycine max]

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 144/303 (47%), Gaps = 32/303 (10%)

Query: 1   MANVDISNIDSLSFVRVLV-KEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLK 59
           +A V++S   SL   + L   +++P I+ S  +      + +  GA  FL KP+S D LK
Sbjct: 66  VAIVEVSTSCSLGGFKFLENAKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLK 125

Query: 60  YVWQHSYIYKRRSKIQ--LEDARKPEQE----ILLNRGNISQGK-RINEGGDDVSRNIAN 112
            +WQH  ++K  +  +  L ++ KP +E    +L  + +I Q K RI+   ++VSR   N
Sbjct: 126 NIWQH-VVHKAFNSGENVLSESLKPVKESVESMLQLQTDIGQDKSRISIDLENVSRFSDN 184

Query: 113 ------------ASATDDLRYSI----NADQNEKNNKQMEVDAQVHIFDENSVKESQNAC 156
                       A +T  L+       + D +E+ N   E ++  H  +  SV+ S    
Sbjct: 185 DHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHEQTNCSTEKESGEHDRECKSVETSCGNL 244

Query: 157 NMEQHLVMANDQIQEQG-GLIKTKRSLDDDRGGEKKRNLNSDNENSNSFMVPTEEKGKEM 215
           N E     ++ Q +E    LI+ +    +   GE   +LN  N+   S         K  
Sbjct: 245 NAE-----SSPQPREPDKTLIREEDDFANVSKGESAVSLNPHNKKFLSNADGNTSPNKTG 299

Query: 216 NENNNGHVKKKRKP-RIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVAS 274
             N++  +K  RK  ++ WT ELH KF++AV  LG  +A P  IL+ M V GLT+  VAS
Sbjct: 300 VLNDSCEIKANRKKVKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVAS 359

Query: 275 HLQ 277
           HLQ
Sbjct: 360 HLQ 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427316|ref|XP_002279150.1| PREDICTED: two-component response regulator-like APRR2 [Vitis vinifera] gi|297742160|emb|CBI33947.3| unnamed protein product [Vitis vinifera]

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 133/309 (43%), Gaps = 41/309 (13%)

Query: 1   MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKY 60
           +A V++S  ++ SF  +   +++P I++SS        + +  GA  FL KP+S D L+ 
Sbjct: 66  VAIVEVSTGNNGSFKFLETAKDLPTIMISSIHCLSTMMKCIALGAVEFLRKPLSEDKLRN 125

Query: 61  VWQHSYIYKR-------------------RSKIQL----EDARKPEQEILLNRGNISQGK 97
           +WQH  ++K                     S +QL    E+ R       LN  N+ +  
Sbjct: 126 IWQH-VVHKAFNAGGSVLPESLKPVKESVASMLQLQMENEEPRNESSAETLNVSNVHEND 184

Query: 98  RINEGGDDVSRNIANASATDDLRYSINADQNEKNNKQMEVDAQVHIFDENSVKESQNACN 157
            +   G D     +        R   + D  ++ N   E ++     +  SV   +  C 
Sbjct: 185 HMQSAGTDKYPAPSTPQLKQGGRSLDDGDCLDQTNCSTEKESGEQDGESKSV---ETTCG 241

Query: 158 MEQHLVMANDQIQEQGGLIKTKRSLDDDR--GGEKKRNLNSDNENSNSFMVPTEEKGKEM 215
                V A  Q+    GL ++    +DD   G + + N++   +N +S    +E  G   
Sbjct: 242 TSVAEVTA--QVSPPQGLGESVIKEEDDSADGCKSESNMSPHPQNKDSL---SEFGGDAR 296

Query: 216 N-------ENNNGHVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLT 268
           N        +  G    ++K ++ WT ELH KF++AV  LG  +A P  IL+ M V GLT
Sbjct: 297 NPRKASGVHSPCGTRANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLT 356

Query: 269 QRQVASHLQ 277
           +  VASHLQ
Sbjct: 357 RHNVASHLQ 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2093668	690	RR1 "response regulator 1" [Ar	0.184	0.073	0.627	1.7e-18
TAIR|locus:2199342	755	APRR6 "pseudo-response regulat	0.577	0.211	0.289	1.6e-17
TAIR|locus:2040194	596	RR12 "response regulator 12" [	0.187	0.087	0.596	8.6e-16
TAIR|locus:2116587	552	RR10 "response regulator 10" [	0.187	0.094	0.576	1.6e-15
TAIR|locus:2065398	382	RR14 "response regulator 14" [	0.184	0.133	0.588	1.7e-14
TAIR|locus:2008585	521	ARR11 "response regulator 11"	0.184	0.097	0.596	1.4e-13
TAIR|locus:2141020	535	APRR2 [Arabidopsis thaliana (t	0.880	0.456	0.272	1.8e-13
TAIR|locus:2130095	664	RR2 "response regulator 2" [Ar	0.494	0.206	0.324	1.1e-11
UNIPROTKB|Q7Y0W3	341	Q7Y0W3 "Two-component response	0.180	0.146	0.58	5.5e-11
UNIPROTKB|Q7Y0W5	341	EHD1 "Two-component response r	0.180	0.146	0.58	5.5e-11

TAIR|locus:2093668 RR1 "response regulator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 32/51 (62%), Positives = 40/51 (78%)

Query:   227 RKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
             +KPR+VW+ ELH +F+ AV+ LG  KA PK IL+ MNVPGLT+  VASHLQ
Sbjct:   236 KKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQ 286

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI;RCA

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2199342 APRR6 "pseudo-response regulator 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 50/173 (28%), Positives = 90/173 (52%)

Query:     1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKY 60
             +AN+++ +IDS SF+  L+ ++IP+IL++           L + ACF L+KPIS DD+K 
Sbjct:    63 IANIEMPHIDSHSFLNALLLKDIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKN 122

Query:    61 VWQHSYIYKRRS--KIQL-EDAR----KPEQEILLNRGNISQGKRINEGGDDVSRNIANA 113
             +WQH +  K +   KI + ED      K   +I   R N+ + +RI++      R   + 
Sbjct:   123 MWQHVFSKKSQELKKINITEDQENVMDKDTYQIEAFRANLKR-QRISQASLLGRRPFIDT 181

Query:   114 SATDDL---RYSI-NADQNEKNNKQMEVDAQVHIFDENSVKESQNACNMEQHL 162
              +T +    R SI N +     +  +E++ +   + + SV   ++  N E+H+
Sbjct:   182 FSTYETFQKRKSIANVEWKTTPSYAIEIENKRKEW-KKSVGRRKSLWNSERHM 233

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

TAIR|locus:2040194 RR12 "response regulator 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
 Identities = 31/52 (59%), Positives = 37/52 (71%)

Query:   226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
             ++K R+VWT ELH KF+ AV+ LG  KA PK IL  MNV  LT+  VASHLQ
Sbjct:   193 QKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQ 244

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

TAIR|locus:2116587 RR10 "response regulator 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 30/52 (57%), Positives = 37/52 (71%)

Query:   226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
             ++KPR++WT ELH KF+ AV  LG  +A PK IL  MNV  LT+  VASHLQ
Sbjct:   181 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 232

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI;RCA

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2065398 RR14 "response regulator 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query:   227 RKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
             +K R+VW+ ELH +F+ AV+ LG  KA PK IL+ MNVPGL++  VASHLQ
Sbjct:   199 KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQ 249

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2008585 ARR11 "response regulator 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 31/52 (59%), Positives = 38/52 (73%)

Query:   227 RKPRIVWTSELHLKFIEAVSSLG-DIKARPKLILQKMNVPGLTQRQVASHLQ 277
             +K R+VW+ ELH KF+ AV+ +G D KA PK IL  MNVP LT+  VASHLQ
Sbjct:   192 KKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQ 243

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2141020 APRR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 78/286 (27%), Positives = 127/286 (44%)

Query:    10 DSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK 69
             +S  F+    K+ +P I++S+      + + +  GA  FL+KP+S + LK +WQH  ++K
Sbjct:    84 ESFKFLEA-AKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNIWQH-VVHK 141

Query:    70 RRSK--IQLEDARKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDDLRYSINADQ 127
               +     +  + KP +E +++  ++     I E           A +T  L+       
Sbjct:   142 AFNDGGSNVSISLKPVKESVVSMLHLETDMTIEEKDP--------APSTPQLK------- 186

Query:   128 NEKNNKQMEVDAQVHI-FDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDDD- 185
               ++++ ++ D Q +I F   +V  S    NME H       I E   +  T R LDDD 
Sbjct:   187 --QDSRLLDGDCQENINFSMENVNSSTEKDNMEDH-----QDIGESKSVDTTNRKLDDDK 239

Query:   186 ------RGGEKKR------NLNSDNENSNSFMVPTXXXXXXXXXXXXXHVK--KKRKPRI 231
                   RG  +K       +L S+  +S                    +V   K  + ++
Sbjct:   240 VVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKKV 299

Query:   232 VWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
              WT ELH KF++AV  LG  +A P  IL+ M V  LT+  VASHLQ
Sbjct:   300 DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQ 345

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2130095 RR2 "response regulator 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 47/145 (32%), Positives = 73/145 (50%)

Query:   133 KQMEVDAQVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDDDRGGEKKR 192
             K + ++A  +I+ ++ V++ +N  N+ +H   +   I++ GG     R        +   
Sbjct:   129 KPVRIEALKNIW-QHVVRKKRNEWNVSEH---SGGSIEDTGG----DRDRQQQHREDADN 180

Query:   193 NLNSDNENSNSFMVPTXXXXXXXXXXXXXHVKKKRKPRIVWTSELHLKFIEAVSSLGDIK 252
             N +S NE +                         +KPR+VW+ ELH +F+ AV+ LG  K
Sbjct:   181 NSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDK 240

Query:   253 ARPKLILQKMNVPGLTQRQVASHLQ 277
             A PK IL+ MNVPGLT+  VASHLQ
Sbjct:   241 AVPKKILEMMNVPGLTRENVASHLQ 265

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IEP;IGI

GO:0010150 "leaf senescence" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0007623 "circadian rhythm" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

UNIPROTKB|Q7Y0W3 Q7Y0W3 "Two-component response regulator EHD1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 136 (52.9 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
 Identities = 29/50 (58%), Positives = 36/50 (72%)

Query:   228 KPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
             K R+ WT++LH +FI AV+ LG+ KA PK IL  M V  LT+ QVASHLQ
Sbjct:   198 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQ 247

GO:0003677 "DNA binding" evidence=IDA

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q7Y0W5 EHD1 "Two-component response regulator EHD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 136 (52.9 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
 Identities = 29/50 (58%), Positives = 36/50 (72%)

Query:   228 KPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
             K R+ WT++LH +FI AV+ LG+ KA PK IL  M V  LT+ QVASHLQ
Sbjct:   198 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQ 247

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-13
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	3e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-04
pfam00072	111	pfam00072, Response_reg, Response regulator receiv	0.002

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 1/51 (1%)

Query: 228 KPRIVWTSELHLKFIEAVSSLGDI-KARPKLILQKMNVPGLTQRQVASHLQ 277
           KPR+VWT +LH +F++AV  LG    A PK IL+ M V GLT+ QVASHLQ
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQ 51

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 59.8 bits (144), Expect = 3e-10
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 22/151 (14%)

Query: 140 QVHIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTKRSLDDDRG---GEKKRNLNS 196
           Q  + +  S+  S+N+ N+E         + + G L++    LD   G   GE++  L +
Sbjct: 143 QGELLESMSLDCSRNSENLE---------LGDLGELLEGSERLDSVPGNEVGEEEALLLA 193

Query: 197 DNENSNSFMVPTEEKGK--EMNENNNGHVKK--------KRKPRIVWTSELHLKFIEAVS 246
           +   +   +V   + G+   ++  +N    K        K+K ++ WT ELH +F+ AV 
Sbjct: 194 EAAKATGDVVSASDSGECSSVDRKDNQASPKSCKNAAPGKKKAKVDWTPELHRRFVHAVE 253

Query: 247 SLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
            LG  KA P  IL+ M V  LT+  +ASHLQ
Sbjct: 254 QLGVEKAFPSRILELMGVQCLTRHNIASHLQ 284

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           R  WT E     IEAV   G        I + +  PG T  Q  +   
Sbjct: 1   RGPWTPEEDELLIEAVKKHG--NGNWSKIAKHL--PGRTDNQCKNRWN 44

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|200976 pfam00072, Response_reg, Response regulator receiver domain

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 4   VDISNIDSLSFVRVLVKEE--IPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLK 59
           + +  +D L  +R + +     P+I++++  +E  +  AL  GA  FL KP   ++L 
Sbjct: 50  IRMPGMDGLELLRRIRRRPPTTPVIVLTAHGDEEDAVEALKAGANDFLSKPFDPEELV 107

This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PLN03162	526	golden-2 like transcription factor; Provisional	99.86
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.78
COG0745	229	OmpR Response regulators consisting of a CheY-like	99.25
COG4566	202	TtrR Response regulator [Signal transduction mecha	99.11
COG2204	464	AtoC Response regulator containing CheY-like recei	98.98
COG4565	224	CitB Response regulator of citrate/malate metaboli	98.9
PF00072	112	Response_reg: Response regulator receiver domain;	98.86
COG4753	475	Response regulator containing CheY-like receiver d	98.84
COG3437	360	Response regulator containing a CheY-like receiver	98.72
COG2197	211	CitB Response regulator containing a CheY-like rec	98.7
PRK10046	225	dpiA two-component response regulator DpiA; Provis	98.68
PRK11475	207	DNA-binding transcriptional activator BglJ; Provis	98.65
PLN03029	222	type-a response regulator protein; Provisional	98.62
PRK10529	225	DNA-binding transcriptional activator KdpE; Provis	98.61
PRK11173	237	two-component response regulator; Provisional	98.57
PRK10430	239	DNA-binding transcriptional activator DcuR; Provis	98.56
COG3706	435	PleD Response regulator containing a CheY-like rec	98.54
PRK10816	223	DNA-binding transcriptional regulator PhoP; Provis	98.54
PRK10643	222	DNA-binding transcriptional regulator BasR; Provis	98.54
PRK09836	227	DNA-binding transcriptional activator CusR; Provis	98.53
PRK10766	221	DNA-binding transcriptional regulator TorR; Provis	98.53
KOG0519	786	consensus Sensory transduction histidine kinase [S	98.52
PRK10955	232	DNA-binding transcriptional regulator CpxR; Provis	98.49
COG0784	130	CheY FOG: CheY-like receiver [Signal transduction	98.48
PRK10336	219	DNA-binding transcriptional regulator QseB; Provis	98.47
PRK09581	457	pleD response regulator PleD; Reviewed	98.46
PRK10693	303	response regulator of RpoS; Provisional	98.46
PRK10701	240	DNA-binding transcriptional regulator RstA; Provis	98.45
PRK09468	239	ompR osmolarity response regulator; Provisional	98.45
PRK11517	223	transcriptional regulatory protein YedW; Provision	98.45
TIGR01387	218	cztR_silR_copR heavy metal response regulator. Mem	98.43
PRK13856	241	two-component response regulator VirG; Provisional	98.43
PRK10161	229	transcriptional regulator PhoB; Provisional	98.42
CHL00148	240	orf27 Ycf27; Reviewed	98.41
TIGR03787	227	marine_sort_RR proteobacterial dedicated sortase s	98.41
PRK11083	228	DNA-binding response regulator CreB; Provisional	98.4
TIGR02154	226	PhoB phosphate regulon transcriptional regulatory	98.39
PRK10840	216	transcriptional regulator RcsB; Provisional	98.37
TIGR02875	262	spore_0_A sporulation transcription factor Spo0A.	98.36
PRK09935	210	transcriptional regulator FimZ; Provisional	98.32
PRK09958	204	DNA-binding transcriptional activator EvgA; Provis	98.31
PRK10360	196	DNA-binding transcriptional activator UhpA; Provis	98.3
PRK09483	217	response regulator; Provisional	98.27
COG4567	182	Response regulator consisting of a CheY-like recei	98.26
PRK14084	246	two-component response regulator; Provisional	98.25
PRK10841	924	hybrid sensory kinase in two-component regulatory	98.24
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	98.23
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.22
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.2
PRK15479	221	transcriptional regulatory protein TctD; Provision	98.19
PRK15347	921	two component system sensor kinase SsrA; Provision	98.14
PRK15115	444	response regulator GlrR; Provisional	98.14
PRK10100	216	DNA-binding transcriptional regulator CsgD; Provis	98.13
PRK10710	240	DNA-binding transcriptional regulator BaeR; Provis	98.13
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	98.11
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.11
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	98.1
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	98.1
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.09
PRK11697	238	putative two-component response-regulatory protein	98.09
COG3947	361	Response regulator containing CheY-like receiver a	98.09
PRK10610	129	chemotaxis regulatory protein CheY; Provisional	98.08
PRK09581	457	pleD response regulator PleD; Reviewed	98.06
PRK10403	215	transcriptional regulator NarP; Provisional	98.05
PRK15369	211	two component system sensor kinase SsrB; Provision	98.05
PRK10651	216	transcriptional regulator NarL; Provisional	98.01
PRK09959	1197	hybrid sensory histidine kinase in two-component r	97.98
PRK09390	202	fixJ response regulator FixJ; Provisional	97.97
PRK12555	337	chemotaxis-specific methylesterase; Provisional	97.9
PRK11091	779	aerobic respiration control sensor protein ArcB; P	97.86
PRK13435	145	response regulator; Provisional	97.83
cd00156	113	REC Signal receiver domain; originally thought to	97.7
PRK13558	665	bacterio-opsin activator; Provisional	97.68
PRK00742	354	chemotaxis-specific methylesterase; Provisional	97.62
COG3707	194	AmiR Response regulator with putative antiterminat	97.61
PRK09191	261	two-component response regulator; Provisional	97.56
PRK13837	828	two-component VirA-like sensor kinase; Provisional	97.18
PRK13557	540	histidine kinase; Provisional	97.15
COG2201	350	CheB Chemotaxis response regulator containing a Ch	97.1
PRK15411	207	rcsA colanic acid capsular biosynthesis activation	97.04
COG3279	244	LytT Response regulator of the LytR/AlgR family [T	96.65
COG3706	435	PleD Response regulator containing a CheY-like rec	96.6
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	96.26
smart00426	68	TEA TEA domain.	94.11
PRK15029	755	arginine decarboxylase; Provisional	92.14
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	90.57
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	87.79

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.86  E-value=2.7e-22  Score=187.96  Aligned_cols=56  Identities=46%  Similarity=0.678  Sum_probs=53.3

Q ss_pred             CCCCCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919          222 HVKKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ  277 (277)
Q Consensus       222 ~~~~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlq  277 (277)
                      .....||+||+||+|||++||+||++||+++||||+||++|+|+||||+|||||||
T Consensus       229 ~~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQ  284 (526)
T PLN03162        229 AAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQ  284 (526)
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHH
Confidence            33457999999999999999999999999999999999999999999999999998

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.78  E-value=1.6e-19  Score=129.59  Aligned_cols=50  Identities=60%  Similarity=0.876  Sum_probs=48.6

Q ss_pred             CCccccChHHHHHHHHHHHhcC-CCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919          228 KPRIVWTSELHLKFIEAVSSLG-DIKARPKLILQKMNVPGLTQRQVASHLQ  277 (277)
Q Consensus       228 k~r~~Wt~~lh~~Fv~av~~lg-~~~a~pk~il~~m~v~~lt~~~v~shlq  277 (277)
                      |+|+.||+|+|.+|++||++|| .+.|+||.|+++|++++||+.||+||||
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~Q   51 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQ   51 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHH
Confidence            6899999999999999999999 4999999999999999999999999998

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Probab=99.25  E-value=1.7e-11  Score=110.55  Aligned_cols=71  Identities=24%  Similarity=0.284  Sum_probs=66.7

Q ss_pred             CccccCCCCCHHHHHHHHHH---cCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVK---EEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire---~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|++||+++|+++++.++.   ..+||||+|+.++......++.+||+|||.|||++.+|..+++.++++...
T Consensus        48 iLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~  121 (229)
T COG0745          48 LLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG  121 (229)
T ss_pred             EEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence            58999999999999999994   278999999999999999999999999999999999999999999998765

>COG4566 TtrR Response regulator [Signal transduction mechanisms]

Probab=99.11  E-value=1.6e-10  Score=101.27  Aligned_cols=71  Identities=23%  Similarity=0.376  Sum_probs=66.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|.+|...+.+.  .+|||++|+.++.....+++..||.|||.||++...|+.+++.++++...
T Consensus        53 llDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~  125 (202)
T COG4566          53 LLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDAS  125 (202)
T ss_pred             EEecCCCCCchHHHHHHHHhcCCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHH
Confidence            589999999999999999876  89999999999999999999999999999999999999999999987543

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=98.98  E-value=1.4e-09  Score=106.99  Aligned_cols=71  Identities=23%  Similarity=0.417  Sum_probs=66.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..  .+|||+||+..+...+..|+..||.|||.|||+++.|...+.+++..+..
T Consensus        53 l~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~  125 (464)
T COG2204          53 LLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL  125 (464)
T ss_pred             EEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence            589999999999999999876  89999999999999999999999999999999999999999999987654

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Probab=98.90  E-value=4.4e-09  Score=93.75  Aligned_cols=71  Identities=14%  Similarity=0.248  Sum_probs=66.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+.+|++|+..++..  .+-||++|+..+.+.+.++++.||.|||.|||..+.|..++....+++..
T Consensus        51 LLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~  123 (224)
T COG4565          51 LLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHA  123 (224)
T ss_pred             EEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHH
Confidence            589999999999999999976  78899999999999999999999999999999999999999988877664

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=98.86  E-value=9e-09  Score=79.70  Aligned_cols=63  Identities=24%  Similarity=0.381  Sum_probs=58.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQ   63 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq   63 (277)
                      |+|+.||+++|+++++.|+..  .+|+|+++...+......++.+|+++||.||+++++|..+|+
T Consensus        48 iid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~  112 (112)
T PF00072_consen   48 IIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN  112 (112)
T ss_dssp             EEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred             EEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence            579999999999999999875  899999999999999999999999999999999999998874

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Probab=98.84  E-value=7.5e-09  Score=102.05  Aligned_cols=75  Identities=13%  Similarity=0.277  Sum_probs=69.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhhhhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQ   75 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~~~~   75 (277)
                      |+|+.||+|||+++++.+++.  ++.+|++|+..+.+.+..|+..|+.+||+||++-++|..++.+++.+...+...
T Consensus        53 iTDI~MP~mdGLdLI~~ike~~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~~~~  129 (475)
T COG4753          53 ITDINMPGMDGLDLIKAIKEQSPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQQKV  129 (475)
T ss_pred             EEecCCCCCcHHHHHHHHHHhCCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999985  899999999999999999999999999999999999999999998887655443

>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Probab=98.72  E-value=2.5e-08  Score=94.78  Aligned_cols=74  Identities=27%  Similarity=0.342  Sum_probs=66.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc-----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhhhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKI   74 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~~~   74 (277)
                      |+|++||+|+|++++.+|+..     .+|||++|+..+.....+++..||++||.||+++.+|...+...+..+++...
T Consensus        63 llD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~  141 (360)
T COG3437          63 LLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDF  141 (360)
T ss_pred             EeeccCCCccHHHHHHHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999873     89999999999999999999999999999999999999999766666644433

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Probab=98.70  E-value=5e-08  Score=86.81  Aligned_cols=69  Identities=19%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.|++.  +++||++|...+...+..++.+||.+|+.|..++++|..+|+.++...
T Consensus        51 l~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~  121 (211)
T COG2197          51 LLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG  121 (211)
T ss_pred             EEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence            589999999999999999855  889999999999999999999999999999999999999999998665

>PRK10046 dpiA two-component response regulator DpiA; Provisional

Probab=98.68  E-value=9.6e-08  Score=84.45  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||+++...+......++..||++||.||++.++|..+++++...+.
T Consensus        55 llD~~mp~~~gle~~~~l~~~~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~  126 (225)
T PRK10046         55 LLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH  126 (225)
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence            579999999999999999864  7889999999999999999999999999999999999999988876544

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional

Probab=98.65  E-value=9.8e-08  Score=84.87  Aligned_cols=69  Identities=14%  Similarity=0.028  Sum_probs=60.1

Q ss_pred             ccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            2 ANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRAL-VEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         2 lDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al-~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      +|+.||+++|+++++.++..  .+|||++|+..+......++ ..||.+||.||.++++|..+|+.+++...
T Consensus        46 ~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~  117 (207)
T PRK11475         46 SAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR  117 (207)
T ss_pred             cccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence            68899999999999999765  89999999987776566655 79999999999999999999999987643

>PLN03029 type-a response regulator protein; Provisional

Probab=98.62  E-value=1.6e-07  Score=83.92  Aligned_cols=71  Identities=24%  Similarity=0.380  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..    .+|||++++........+++..|+++||.||+...+|...+.++++.+..
T Consensus        77 llD~~mp~~~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~~~  151 (222)
T PLN03029         77 ITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKSK  151 (222)
T ss_pred             EEcCCCCCCCHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999864    78999999999999999999999999999999999999888888766543

>PRK10529 DNA-binding transcriptional activator KdpE; Provisional

Probab=98.61  E-value=1.9e-07  Score=80.62  Aligned_cols=69  Identities=26%  Similarity=0.389  Sum_probs=63.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++.++|...++.++++.
T Consensus        50 ild~~l~~~~g~~~~~~lr~~~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~  119 (225)
T PRK10529         50 ILDLGLPDGDGIEFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH  119 (225)
T ss_pred             EEeCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence            578999999999999999865 899999999999999999999999999999999999999999888764

>PRK11173 two-component response regulator; Provisional

Probab=98.57  E-value=2.6e-07  Score=80.99  Aligned_cols=70  Identities=17%  Similarity=0.294  Sum_probs=63.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++..+|...+..++++..
T Consensus        52 ild~~l~~~~g~~~~~~lr~~~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~~  122 (237)
T PRK11173         52 IMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM  122 (237)
T ss_pred             EEcCCCCCCCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhccc
Confidence            578999999999999999865 8999999999888888899999999999999999999999999887753

>PRK10430 DNA-binding transcriptional activator DcuR; Provisional

Probab=98.56  E-value=3.1e-07  Score=81.81  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..|+.+||.||++.++|..++..+...+
T Consensus        54 ilD~~~p~~~G~eli~~l~~~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~  124 (239)
T PRK10430         54 LLDIYMQQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK  124 (239)
T ss_pred             EEecCCCCCCcHHHHHHHHhhCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence            578999999999999999865  789999999999999999999999999999999999999998765543

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Probab=98.54  E-value=2.8e-07  Score=90.35  Aligned_cols=72  Identities=26%  Similarity=0.430  Sum_probs=66.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS   72 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~   72 (277)
                      |+|+.||++||++++.+++..    .+|||++++.++.....+++..|+.|||.||+...+|...+...+++++-+
T Consensus       181 l~d~~mp~~dg~el~~~lr~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~  256 (435)
T COG3706         181 LLDANMPDMDGLELCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE  256 (435)
T ss_pred             EEecCCCccCHHHHHHHHhcccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHH
Confidence            579999999999999999854    899999999999999999999999999999999999999999998887743

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional

Probab=98.54  E-value=3.7e-07  Score=78.86  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=63.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|+|+++...+......++..||++||.||++..+|...+..++++.
T Consensus        49 ild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~  119 (223)
T PRK10816         49 IVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN  119 (223)
T ss_pred             EEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence            478899999999999999864  899999999999999999999999999999999999999999888763

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional

Probab=98.54  E-value=4.2e-07  Score=77.67  Aligned_cols=70  Identities=17%  Similarity=0.294  Sum_probs=63.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|+|+++...+......++..||++|+.||++.++|...++.++++..
T Consensus        49 lld~~~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~  120 (222)
T PRK10643         49 VLDLGLPDEDGLHLLRRWRQKKYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQ  120 (222)
T ss_pred             EEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhc
Confidence            478899999999999999865  7999999999999999999999999999999999999999998877643

>PRK09836 DNA-binding transcriptional activator CusR; Provisional

Probab=98.53  E-value=3.9e-07  Score=78.91  Aligned_cols=68  Identities=21%  Similarity=0.321  Sum_probs=62.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..  .+|+|+++...+......++..||++||.||++.++|...+..++++
T Consensus        49 ild~~~~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~  118 (227)
T PRK09836         49 ILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR  118 (227)
T ss_pred             EEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence            478899999999999999865  79999999999999999999999999999999999999999988765

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional

Probab=98.53  E-value=4e-07  Score=78.42  Aligned_cols=70  Identities=21%  Similarity=0.297  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++..+|...+..++++..
T Consensus        51 ild~~l~~~~g~~~~~~lr~~~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~  121 (221)
T PRK10766         51 LLDINLPGEDGLMLTRELRSRSTVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRIS  121 (221)
T ss_pred             EEeCCCCCCCHHHHHHHHHhCCCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhc
Confidence            478899999999999999865 8999999999988888999999999999999999999999998887643

>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]

Probab=98.52  E-value=1.9e-07  Score=97.81  Aligned_cols=67  Identities=16%  Similarity=0.344  Sum_probs=62.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr   67 (277)
                      |+|++||.|||+++.++||..   .+|||.+|++.......+|++.|.++||.||+..+.|..+++.++.
T Consensus       716 fmD~qMP~mDG~e~~~~irk~~~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~  785 (786)
T KOG0519|consen  716 FMDLQMPEMDGYEATREIRKKERWHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL  785 (786)
T ss_pred             EEEcCCcccchHHHHHHHHHhhcCCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence            589999999999999999865   8999999999999999999999999999999999999988887653

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional

Probab=98.49  E-value=6e-07  Score=77.55  Aligned_cols=69  Identities=19%  Similarity=0.255  Sum_probs=62.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|+|+++...+......++..||++||.||++.++|..++..++++.
T Consensus        49 l~d~~~~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~  118 (232)
T PRK10955         49 LLDVMMPKKNGIDTLKELRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS  118 (232)
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence            578999999999999999865 689999999888888889999999999999999999999999888764

>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]

Probab=98.48  E-value=8.3e-07  Score=70.25  Aligned_cols=67  Identities=27%  Similarity=0.465  Sum_probs=56.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDD-LKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~ee-L~~~Lq~vlr   67 (277)
                      |+|+.||+++|+++++.++..  .+|+|++++.........++..|+++|+.||+...+ |...+.+.+.
T Consensus        56 i~D~~mp~~~G~~~~~~l~~~~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~  125 (130)
T COG0784          56 LLDINMPGMDGIELLRRLRARGPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA  125 (130)
T ss_pred             EEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence            589999999999999999875  788888888888876777899999999999977666 6766664443

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional

Probab=98.47  E-value=7.5e-07  Score=76.12  Aligned_cols=69  Identities=14%  Similarity=0.222  Sum_probs=62.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|+|+++...+......++..||++|+.||++.++|..++..++++.
T Consensus        49 ild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~  119 (219)
T PRK10336         49 ILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT  119 (219)
T ss_pred             EEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence            578899999999999999865  789999999999888899999999999999999999999999887754

>PRK09581 pleD response regulator PleD; Reviewed

Probab=98.46  E-value=3.7e-07  Score=86.79  Aligned_cols=69  Identities=22%  Similarity=0.298  Sum_probs=62.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.+++.    .+|||++|+..+......++..||++||.||+++++|...+....++.
T Consensus       203 i~d~~~p~~~g~~l~~~i~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~~  275 (457)
T PRK09581        203 IVSANFENYDPLRLCSQLRSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRK  275 (457)
T ss_pred             EecCCCCCchHhHHHHHHHhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHHH
Confidence            579999999999999999863    799999999999999999999999999999999999999988766644

>PRK10693 response regulator of RpoS; Provisional

Probab=98.46  E-value=7.3e-07  Score=83.17  Aligned_cols=68  Identities=19%  Similarity=0.311  Sum_probs=61.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..  .+|||++++........+++..||++||.||+ +.++|...+..+++.
T Consensus        22 L~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~   92 (303)
T PRK10693         22 ICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYP   92 (303)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhh
Confidence            578999999999999999865  79999999999999999999999999999999 589999988877653

>PRK10701 DNA-binding transcriptional regulator RstA; Provisional

Probab=98.45  E-value=8.6e-07  Score=77.71  Aligned_cols=70  Identities=20%  Similarity=0.250  Sum_probs=62.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++.. .+|+|+++..........++..||++||.||++..+|...+..++++..
T Consensus        50 ild~~l~~~~g~~~~~~ir~~~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~~  120 (240)
T PRK10701         50 LLDIMLPGKDGMTICRDLRPKWQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE  120 (240)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhccc
Confidence            578999999999999999865 7899999988888888899999999999999999999999998887643

>PRK09468 ompR osmolarity response regulator; Provisional

Probab=98.45  E-value=7.6e-07  Score=77.87  Aligned_cols=69  Identities=23%  Similarity=0.285  Sum_probs=63.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|...+..++++.
T Consensus        54 ild~~l~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~  124 (239)
T PRK09468         54 VLDLMLPGEDGLSICRRLRSQNNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ  124 (239)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence            478899999999999999865  799999999999988899999999999999999999999999888764

>PRK11517 transcriptional regulatory protein YedW; Provisional

Probab=98.45  E-value=8.8e-07  Score=76.06  Aligned_cols=69  Identities=22%  Similarity=0.319  Sum_probs=62.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|+|+++...+......++..||++|+.||++.++|...++.++++.
T Consensus        49 i~d~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~  118 (223)
T PRK11517         49 ILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH  118 (223)
T ss_pred             EEECCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence            478899999999999998865 899999999999999999999999999999999999999999887653

>TIGR01387 cztR_silR_copR heavy metal response regulator

Probab=98.43  E-value=9.1e-07  Score=75.37  Aligned_cols=70  Identities=20%  Similarity=0.317  Sum_probs=63.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||+++...+......++.+||++|+.||++.++|...+..++++..
T Consensus        47 l~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~  118 (218)
T TIGR01387        47 ILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH  118 (218)
T ss_pred             EEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence            468899999999999999864  8999999999999999999999999999999999999999988876543

Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.

>PRK13856 two-component response regulator VirG; Provisional

Probab=98.43  E-value=1.1e-06  Score=77.60  Aligned_cols=69  Identities=25%  Similarity=0.362  Sum_probs=60.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecC-CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSR-RNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~-~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|+|++++. ........++..||++||.||++..+|...++.++++.
T Consensus        50 i~d~~l~~~~g~~l~~~i~~~~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~  120 (241)
T PRK13856         50 VVDLNLGREDGLEIVRSLATKSDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR  120 (241)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence            578899999999999999865 8999999985 45666778999999999999999999999999888764

>PRK10161 transcriptional regulator PhoB; Provisional

Probab=98.42  E-value=1.2e-06  Score=76.01  Aligned_cols=68  Identities=22%  Similarity=0.339  Sum_probs=62.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..    .+|||+++...+......++.+||++||.||++..+|...+..++++
T Consensus        51 ild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~  122 (229)
T PRK10161         51 LLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR  122 (229)
T ss_pred             EEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence            578899999999999999753    68999999999889999999999999999999999999999988775

>CHL00148 orf27 Ycf27; Reviewed

Probab=98.41  E-value=1.4e-06  Score=75.69  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=62.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||++.++|...+..++++.
T Consensus        55 lld~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~  124 (240)
T CHL00148         55 ILDVMMPKLDGYGVCQEIRKESDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT  124 (240)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence            478899999999999998865 899999999998888899999999999999999999999999887664

>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator

Probab=98.41  E-value=1.5e-06  Score=75.07  Aligned_cols=69  Identities=19%  Similarity=0.249  Sum_probs=62.2

Q ss_pred             CccccCCC--CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISN--IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpd--mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+  .+|+++++.++..  .+|+|++++..+......++.+||++|+.||++..+|..+++.++++.
T Consensus        49 ild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~  121 (227)
T TIGR03787        49 IIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA  121 (227)
T ss_pred             EEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence            47889997  5899999999865  799999999999888999999999999999999999999999888764

This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.

>PRK11083 DNA-binding response regulator CreB; Provisional

Probab=98.40  E-value=1e-06  Score=75.61  Aligned_cols=69  Identities=20%  Similarity=0.320  Sum_probs=62.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+.+|+++++.++..  .+|+|+++...+......++..||++||.||++..+|..++..++++.
T Consensus        52 l~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~  122 (228)
T PRK11083         52 ILDVGLPDISGFELCRQLLAFHPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV  122 (228)
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence            478899999999999999865  899999999888888889999999999999999999999998887664

>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB

Probab=98.39  E-value=1.3e-06  Score=74.68  Aligned_cols=69  Identities=23%  Similarity=0.287  Sum_probs=62.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..    .+|||+++...+......++..||++|+.||++.++|..++..++++.
T Consensus        51 i~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~  123 (226)
T TIGR02154        51 LLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI  123 (226)
T ss_pred             EEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence            578899999999999999753    689999999998888999999999999999999999999999887664

PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.

>PRK10840 transcriptional regulator RcsB; Provisional

Probab=98.37  E-value=1.6e-06  Score=75.73  Aligned_cols=68  Identities=12%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             CccccCCC---CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISN---IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpd---mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+   ++|+++++.++..  .+|||+++...+......++..||++||.||+++++|..+|+.++..
T Consensus        54 llD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g  126 (216)
T PRK10840         54 ITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG  126 (216)
T ss_pred             EEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence            47889998   5999999999764  78999999999999999999999999999999999999999987654

>TIGR02875 spore_0_A sporulation transcription factor Spo0A

Probab=98.36  E-value=1.6e-06  Score=77.92  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=61.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..    .+|||++++.........++..|+++||.||++..+|...++.++..
T Consensus        53 llD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~  124 (262)
T TIGR02875        53 VLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG  124 (262)
T ss_pred             EEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            579999999999999999864    38899999999988889999999999999999999999999887654

Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.

>PRK09935 transcriptional regulator FimZ; Provisional

Probab=98.32  E-value=2.5e-06  Score=72.22  Aligned_cols=69  Identities=19%  Similarity=0.300  Sum_probs=62.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.+|+++|+++++.++..  .+|||+++..........++..|+++|+.||++.++|..+++.++.+.
T Consensus        54 ild~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~  124 (210)
T PRK09935         54 IMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY  124 (210)
T ss_pred             EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence            478899999999999999864  799999999988888899999999999999999999999998887653

>PRK09958 DNA-binding transcriptional activator EvgA; Provisional

Probab=98.31  E-value=2.6e-06  Score=72.31  Aligned_cols=68  Identities=18%  Similarity=0.271  Sum_probs=61.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.+|+++|+++++.++..  .+|+|+++..........++..||++||.||+++++|..+++.++++
T Consensus        50 i~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~  119 (204)
T PRK09958         50 IIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG  119 (204)
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence            478899999999999999864  68999999988888889999999999999999999999999988765

>PRK10360 DNA-binding transcriptional activator UhpA; Provisional

Probab=98.30  E-value=2.7e-06  Score=71.72  Aligned_cols=67  Identities=24%  Similarity=0.276  Sum_probs=60.9

Q ss_pred             CccccCCCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.+|+++|+++++.++. .+|||+++..........++..||++|+.||++.++|..+++.++++
T Consensus        52 i~d~~~~~~~g~~~~~~l~~-~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~  118 (196)
T PRK10360         52 ICDISMPDISGLELLSQLPK-GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG  118 (196)
T ss_pred             EEeCCCCCCCHHHHHHHHcc-CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence            47888999999999998863 78999999999999899999999999999999999999999988865

>PRK09483 response regulator; Provisional

Probab=98.27  E-value=3.4e-06  Score=72.22  Aligned_cols=69  Identities=13%  Similarity=0.257  Sum_probs=62.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.+|+++|+++++.++..  .+|+|+++..........++..|+++|+.||++.++|..+++.+++..
T Consensus        52 i~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~  122 (217)
T PRK09483         52 LMDMNMPGIGGLEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ  122 (217)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence            578899999999999998764  799999999988888899999999999999999999999999887654

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Probab=98.26  E-value=1.3e-06  Score=74.57  Aligned_cols=64  Identities=19%  Similarity=0.362  Sum_probs=59.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQH   64 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~   64 (277)
                      ++|+.|.+.+|+.+++.|++.  +..+|+++++.+......++..||++||.||.+.+++..++..
T Consensus        58 vvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~  123 (182)
T COG4567          58 VVDLKLGDGSGLAVIEALRERRADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR  123 (182)
T ss_pred             EEEeeecCCCchHHHHHHHhcCCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence            479999999999999999876  9999999999999999999999999999999999998877653

>PRK14084 two-component response regulator; Provisional

Probab=98.25  E-value=3.8e-06  Score=74.43  Aligned_cols=67  Identities=13%  Similarity=0.209  Sum_probs=56.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  ..++|++++..  ....+++..||.+||.||++.++|..++..+.+..
T Consensus        51 ~lDi~m~~~~G~~~~~~i~~~~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~  119 (246)
T PRK14084         51 FLDINLMDESGIELAAKIQKMKEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK  119 (246)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence            579999999999999999875  56677777654  35678999999999999999999999999887553

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

Probab=98.24  E-value=3.6e-06  Score=89.66  Aligned_cols=70  Identities=23%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+|+|+++++.+++.  .+|||++++.........++.+|+++||.||++.++|...+..+.++.+
T Consensus       850 l~D~~mP~mdG~el~~~ir~~~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~r  921 (924)
T PRK10841        850 LTDVNMPNMDGYRLTQRLRQLGLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERVR  921 (924)
T ss_pred             EEcCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            579999999999999999875  7999999999999999999999999999999999999999988766543

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=98.23  E-value=4.2e-06  Score=81.25  Aligned_cols=68  Identities=18%  Similarity=0.311  Sum_probs=61.4

Q ss_pred             CccccCCC-----CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISN-----IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpd-----mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+     ++|+++++.++..  .+|||++++..+......++..||++||.||+++++|..++..++..
T Consensus        45 llD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~  119 (445)
T TIGR02915        45 TLDLGLPPDADGASEGLAALQQILAIAPDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL  119 (445)
T ss_pred             EEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence            57889995     8999999998765  79999999999999999999999999999999999999999887654

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.22  E-value=3.2e-06  Score=88.26  Aligned_cols=68  Identities=21%  Similarity=0.215  Sum_probs=62.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+.........++..|+++||.||++..+|...+..++..
T Consensus       716 l~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  787 (919)
T PRK11107        716 LMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG  787 (919)
T ss_pred             EEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence            589999999999999999863    79999999999999999999999999999999999999998877654

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.20  E-value=4e-06  Score=87.89  Aligned_cols=69  Identities=14%  Similarity=0.194  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++++.........++..|+++||.||++.++|...+.++++..
T Consensus       731 l~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~  801 (914)
T PRK11466        731 LVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ  801 (914)
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence            589999999999999999865  899999999999888999999999999999999999999999988654

>PRK15479 transcriptional regulatory protein TctD; Provisional

Probab=98.19  E-value=8.9e-06  Score=69.37  Aligned_cols=70  Identities=20%  Similarity=0.362  Sum_probs=62.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.+|+++|++++..++..  .+|+|+++...+......++..|+++|+.||+...+|...+..++++..
T Consensus        49 ild~~~~~~~~~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~  120 (221)
T PRK15479         49 VLDINMPGMDGLEVLQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA  120 (221)
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhc
Confidence            468889999999999998764  7999999998888888899999999999999999999999988876543

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=98.14  E-value=7.3e-06  Score=85.69  Aligned_cols=68  Identities=15%  Similarity=0.304  Sum_probs=61.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc------CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE------EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~------~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..      .+|||++|+.........++..|+++||.||++.++|..++..+++.
T Consensus       739 l~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  812 (921)
T PRK15347        739 LMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY  812 (921)
T ss_pred             EEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence            579999999999999999852      68999999999999999999999999999999999999999877653

>PRK15115 response regulator GlrR; Provisional

Probab=98.14  E-value=6e-06  Score=80.14  Aligned_cols=69  Identities=17%  Similarity=0.312  Sum_probs=63.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||.+||.||+...+|...+..+++..
T Consensus        54 ilD~~lp~~~g~~ll~~l~~~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~  124 (444)
T PRK15115         54 ISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS  124 (444)
T ss_pred             EEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence            579999999999999998765  799999999998888999999999999999999999999999887653

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional

Probab=98.13  E-value=7.8e-06  Score=73.12  Aligned_cols=67  Identities=9%  Similarity=0.075  Sum_probs=55.4

Q ss_pred             CccccCCCCCHHHHH-HHHHHc--CCcEEEEecCCCHHHHHHHHH--cCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFV-RVLVKE--EIPIILMSSRRNEIFSWRALV--EGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL-~~Ire~--~iPVIllSs~~~~~~v~~al~--~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|++++ +.++..  .++||++|...+.  ...++.  .||.+||.|+.++++|..+|+.+++..
T Consensus        57 llDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~  128 (216)
T PRK10100         57 LLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGE  128 (216)
T ss_pred             EEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence            589999999999997 456654  7899999998763  344555  599999999999999999999988654

>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional

Probab=98.13  E-value=1.3e-05  Score=69.64  Aligned_cols=69  Identities=20%  Similarity=0.257  Sum_probs=61.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|++++..++.. .+|+|+++..........++..||++|+.||++..+|...+..++++.
T Consensus        59 l~d~~~~~~~g~~~~~~l~~~~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~  128 (240)
T PRK10710         59 LLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC  128 (240)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence            478899999999999998865 899999999888888889999999999999999999999998887754

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=98.11  E-value=1.1e-05  Score=78.85  Aligned_cols=69  Identities=17%  Similarity=0.370  Sum_probs=63.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..|+.+||.||++.++|...+..++...
T Consensus        52 llD~~lp~~dgl~~l~~ir~~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~  122 (469)
T PRK10923         52 LSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY  122 (469)
T ss_pred             EECCCCCCCCHHHHHHHHHhhCCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence            578999999999999999865  789999999999999999999999999999999999999999887653

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.11  E-value=1.1e-05  Score=78.70  Aligned_cols=69  Identities=20%  Similarity=0.362  Sum_probs=62.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|++++..++..  .+|||++++.........++..|+.+||.||++.+.|...+..++...
T Consensus        47 llD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~  117 (463)
T TIGR01818        47 ITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA  117 (463)
T ss_pred             EEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence            578999999999999999865  789999999998888999999999999999999999999998877643

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=98.10  E-value=8e-06  Score=79.35  Aligned_cols=68  Identities=21%  Similarity=0.383  Sum_probs=61.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..|+.+||.||++.++|...+..++..
T Consensus        53 llD~~~p~~~g~~ll~~i~~~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~  122 (457)
T PRK11361         53 LMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL  122 (457)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence            578999999999999998764  79999999999999999999999999999999999999999877653

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=98.10  E-value=9.5e-06  Score=85.40  Aligned_cols=68  Identities=16%  Similarity=0.162  Sum_probs=62.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--C---CcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--E---IPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~---iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..  .   +|||++++.........++..|+++||.||++..+|...+..++..
T Consensus       751 l~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  823 (968)
T TIGR02956       751 LLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG  823 (968)
T ss_pred             EECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence            589999999999999999864  3   8999999999999999999999999999999999999999888754

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.09  E-value=6.8e-06  Score=79.39  Aligned_cols=69  Identities=22%  Similarity=0.417  Sum_probs=62.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|++++..++..  .+|||++++.........++..|+.+||.||++.+.|...+..++...
T Consensus        54 ilD~~m~~~~G~~~~~~ir~~~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~  124 (441)
T PRK10365         54 LCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT  124 (441)
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            579999999999999999865  789999999988889999999999999999999999999999887654

>PRK11697 putative two-component response-regulatory protein YehT; Provisional

Probab=98.09  E-value=1.1e-05  Score=70.75  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=54.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. ..++|++++..  .....++..||.+||.||++.++|..++.++.+..
T Consensus        52 ~lDi~~~~~~G~~~~~~l~~~~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~~  119 (238)
T PRK11697         52 FLDIQMPRISGLELVGMLDPEHMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQER  119 (238)
T ss_pred             EEeCCCCCCCHHHHHHHhcccCCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence            579999999999999988644 34566676654  45678899999999999999999999998886543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=98.09  E-value=3.2e-06  Score=78.94  Aligned_cols=67  Identities=15%  Similarity=0.236  Sum_probs=57.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      ++|+.||+|+|++|+++++..  .+|+|++|+....  ...++..-+.+||+||++++.|..+|.++.++.
T Consensus        49 fldI~mp~~ngiefaeQvr~i~~~v~iifIssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v  117 (361)
T COG3947          49 FLDIVMPYMNGIEFAEQVRDIESAVPIIFISSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV  117 (361)
T ss_pred             EEEeecCCccHHHHHHHHHHhhccCcEEEEecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence            579999999999999999876  8999999997654  456667778999999999999999998877443

>PRK10610 chemotaxis regulatory protein CheY; Provisional

Probab=98.08  E-value=3.1e-05  Score=58.47  Aligned_cols=68  Identities=15%  Similarity=0.334  Sum_probs=59.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      ++|..+++++|+++++.++..    .+|+++++..........++..|+.+|+.||++..+|...++.++++
T Consensus        55 l~d~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~  126 (129)
T PRK10610         55 ISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK  126 (129)
T ss_pred             EEcCCCCCCCHHHHHHHHHhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence            357778899999999998753    58999999888888888999999999999999999999999887765

>PRK09581 pleD response regulator PleD; Reviewed

Probab=98.06  E-value=2e-05  Score=74.95  Aligned_cols=70  Identities=24%  Similarity=0.275  Sum_probs=62.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+.+|+++++.++..    .+|||+++...+......++..||++||.||++.++|..++..+++.+.
T Consensus        51 i~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~  124 (457)
T PRK09581         51 LLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKM  124 (457)
T ss_pred             EEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            478899999999999999863    6899999999998899999999999999999999999999988876543

>PRK10403 transcriptional regulator NarP; Provisional

Probab=98.05  E-value=1.7e-05  Score=66.87  Aligned_cols=68  Identities=13%  Similarity=0.136  Sum_probs=60.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.+|+++|++++..++..  .+|+|+++..........++..|+++|+.||++..+|...++.++..
T Consensus        57 i~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~  126 (215)
T PRK10403         57 LLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG  126 (215)
T ss_pred             EEecCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence            468889999999999998765  68999999888888888999999999999999999999999887654

>PRK15369 two component system sensor kinase SsrB; Provisional

Probab=98.05  E-value=1.9e-05  Score=65.87  Aligned_cols=68  Identities=18%  Similarity=0.269  Sum_probs=60.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.+++++|++++..++..  .+|+|+++..........++..|+.+|+.||++..+|...+..+++.
T Consensus        54 l~d~~~~~~~~~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~  123 (211)
T PRK15369         54 ILDLGLPGMNGLDVIPQLHQRWPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG  123 (211)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence            468889999999999998764  78999999998888889999999999999999999999999887654

>PRK10651 transcriptional regulator NarL; Provisional

Probab=98.01  E-value=2.6e-05  Score=65.95  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.+|+++|+++++.++..  .+|+|+++..........++..|+.+|+.||++..+|...+..+++..
T Consensus        57 l~d~~l~~~~~~~~~~~l~~~~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~  127 (216)
T PRK10651         57 LLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE  127 (216)
T ss_pred             EEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence            468889999999999998764  789999999888888889999999999999999999999999887653

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=97.98  E-value=2.1e-05  Score=85.07  Aligned_cols=67  Identities=22%  Similarity=0.328  Sum_probs=61.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr   67 (277)
                      |+|+.||+++|+++++.++..  .+|||++++.........++..|+++||.||++.++|...+..++.
T Consensus      1007 l~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959       1007 ITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence            579999999999999999865  7999999999999999999999999999999999999999887654

>PRK09390 fixJ response regulator FixJ; Provisional

Probab=97.97  E-value=2.1e-05  Score=65.40  Aligned_cols=69  Identities=23%  Similarity=0.388  Sum_probs=61.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.+|+++|++++..++..  .+|+|+++...+......++..|+.+|+.||+....|...+..++...
T Consensus        52 i~d~~~~~~~~~~~~~~l~~~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~  122 (202)
T PRK09390         52 VTDVRMPGIDGIELLRRLKARGSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA  122 (202)
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence            468889999999999999864  789999999888888899999999999999999999999888877653

>PRK12555 chemotaxis-specific methylesterase; Provisional

Probab=97.90  E-value=3.8e-05  Score=72.30  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCC---------CHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRN--EIFSWRALVEGACFFLEKPI---------SFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~--~~~v~~al~~GA~dyL~KPi---------s~eeL~~~Lq~vlr   67 (277)
                      |+|+.||+|+|+++++.++.. .+|||+++....  .....+++..|+.+||.||+         ..++|...++.+.+
T Consensus        51 llD~~mp~~~G~e~l~~l~~~~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~  129 (337)
T PRK12555         51 LMDLEMPRMDGVEATRRIMAERPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR  129 (337)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence            579999999999999999755 799999987643  45667899999999999999         45566666665543

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=97.86  E-value=4.5e-05  Score=79.01  Aligned_cols=68  Identities=16%  Similarity=0.257  Sum_probs=57.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc----C-CcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----E-IPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~-iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..    . +|||++++.... ....++..|+++||.||++..+|...+.+++...
T Consensus       574 l~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~  646 (779)
T PRK11091        574 LLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ  646 (779)
T ss_pred             EEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence            579999999999999999865    3 588888886654 4578899999999999999999999998887543

>PRK13435 response regulator; Provisional

Probab=97.83  E-value=5.9e-05  Score=61.28  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=54.6

Q ss_pred             CccccCC-CCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDIS-NIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mp-dmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.++ +.+|+++++.++.. .+|+|+++...+.   ..++..|+++||.||++..+|...|++++.++.
T Consensus        55 ivd~~~~~~~~~~~~~~~l~~~~~~pii~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~  123 (145)
T PRK13435         55 LVDVHLADGPTGVEVARRLSADGGVEVVFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV  123 (145)
T ss_pred             EEeeecCCCCcHHHHHHHHHhCCCCCEEEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence            4677787 48999999988654 8999999876432   457789999999999999999999988876554

>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Probab=97.70  E-value=0.00011  Score=52.53  Aligned_cols=65  Identities=26%  Similarity=0.416  Sum_probs=55.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS   65 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v   65 (277)
                      |+|..+++.+++++++.++..  .+|+++++..........++..|+.+|+.+|+....|...+..+
T Consensus        46 i~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~  112 (113)
T cd00156          46 LLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL  112 (113)
T ss_pred             EEecCCCCCchHHHHHHHHHhCCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence            356778889999999998764  78999998877777788889999999999999999998887654

>PRK13558 bacterio-opsin activator; Provisional

Probab=97.68  E-value=0.00011  Score=74.71  Aligned_cols=68  Identities=12%  Similarity=0.179  Sum_probs=57.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHH--HHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFD--DLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~e--eL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..|+.+|+.||....  .+..+++.++..
T Consensus        56 l~d~~lp~~~g~~~l~~l~~~~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~  127 (665)
T PRK13558         56 VADHEPDGFDGLALLEAVRQTTAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE  127 (665)
T ss_pred             EEeccCCCCcHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence            578999999999999999865  79999999999999999999999999999997643  566666655544

>PRK00742 chemotaxis-specific methylesterase; Provisional

Probab=97.62  E-value=0.00019  Score=67.92  Aligned_cols=54  Identities=26%  Similarity=0.431  Sum_probs=45.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCC--CHHHHHHHHHcCCcEEEeCCCC
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRR--NEIFSWRALVEGACFFLEKPIS   54 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~--~~~~v~~al~~GA~dyL~KPis   54 (277)
                      |+|+.||+++|+++++.++.. .+|+|+++...  .......++..|+++||.||+.
T Consensus        54 llD~~mp~~dgle~l~~i~~~~~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~  110 (354)
T PRK00742         54 TLDVEMPVMDGLDALEKIMRLRPTPVVMVSSLTERGAEITLRALELGAVDFVTKPFL  110 (354)
T ss_pred             EEeCCCCCCChHHHHHHHHHhCCCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence            478999999999999998765 69999998753  3456678999999999999994

>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Probab=97.61  E-value=0.00025  Score=62.68  Aligned_cols=71  Identities=11%  Similarity=0.190  Sum_probs=57.6

Q ss_pred             CccccCCCCCHHHHHHHHHH-cCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVK-EEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire-~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.+|..|-.+-+....+ ...|+|+++.+.++..+..++.+|+.+||+||+++..|+.++.-++.+...
T Consensus        55 ildie~p~rd~~e~~~~~~~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~  126 (194)
T COG3707          55 ILDIEMPRRDIIEALLLASENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEE  126 (194)
T ss_pred             EEecCCCCccHHHHHHHhhcCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHH
Confidence            57888888883333333333 378999999999999999999999999999999999999999877766553

>PRK09191 two-component response regulator; Provisional

Probab=97.56  E-value=0.00028  Score=62.74  Aligned_cols=69  Identities=14%  Similarity=0.420  Sum_probs=55.3

Q ss_pred             CccccCCC-CCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISN-IDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpd-mdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+ ++|+++++.++.. .+|||+++.......  .+...++.+|+.||++.++|...++.++....+
T Consensus       187 i~d~~~~~~~~g~e~l~~l~~~~~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~~  257 (261)
T PRK09191        187 LADIQLADGSSGIDAVNDILKTFDVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFFQET  257 (261)
T ss_pred             EEecCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhccch
Confidence            57888995 8999999998754 899999998765543  344567889999999999999999887766443

>PRK13837 two-component VirA-like sensor kinase; Provisional

Probab=97.18  E-value=0.00087  Score=70.51  Aligned_cols=64  Identities=25%  Similarity=0.242  Sum_probs=57.7

Q ss_pred             cCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            5 DISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         5 ~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      .||+++|++++..++..  .+|||+++..........++..| ++||.||++..+|..++.++++..
T Consensus       750 ~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~  815 (828)
T PRK13837        750 DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA  815 (828)
T ss_pred             CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence            58899999999999865  89999999998888888999999 999999999999999999887653

>PRK13557 histidine kinase; Provisional

Probab=97.15  E-value=0.0009  Score=65.00  Aligned_cols=68  Identities=10%  Similarity=0.105  Sum_probs=59.1

Q ss_pred             CccccCCC-CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISN-IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpd-mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|..+++ ++|+++++.++..  .+|+|+++..........++..|+.+|+.||++.++|...+..++..
T Consensus       465 i~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~  535 (540)
T PRK13557        465 FTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG  535 (540)
T ss_pred             EEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence            46788996 9999999999864  79999999988888788888999999999999999999988876653

>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.10  E-value=0.0013  Score=63.13  Aligned_cols=54  Identities=28%  Similarity=0.444  Sum_probs=46.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCCC
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRN--EIFSWRALVEGACFFLEKPIS   54 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~--~~~v~~al~~GA~dyL~KPis   54 (277)
                      .+|+.||.|||+++++.+... .+||||+|+-..  .....+++..||.||+.||..
T Consensus        52 ~ld~emp~mdgl~~l~~im~~~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~  108 (350)
T COG2201          52 TLDVEMPVMDGLEALRKIMRLRPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG  108 (350)
T ss_pred             EEecccccccHHHHHHHHhcCCCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence            379999999999999997655 999999987544  456779999999999999974

>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional

Probab=97.04  E-value=0.0014  Score=58.03  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             Ccccc--CCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcE-EEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVD--ISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACF-FLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~--mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~d-yL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.  ++..+|+++++.+++.  .++||++|...+..... ++..|+.. |+.|+.++++|..+++.+..+.
T Consensus        52 LlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~  124 (207)
T PRK15411         52 FINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKE  124 (207)
T ss_pred             EEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence            46754  8888999999999765  78999999887765543 44445544 8899999999999999987654

>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Probab=96.65  E-value=0.0028  Score=57.78  Aligned_cols=66  Identities=18%  Similarity=0.291  Sum_probs=54.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      ++|+.||+++|+++...++..  ..+|+++++..  .....++...|.+||.||+..+.|...+....+.
T Consensus        52 fldI~~~~~~G~ela~~i~~~~~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~  119 (244)
T COG3279          52 FLDIAMPDINGIELAARIRKGDPRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY  119 (244)
T ss_pred             EEeeccCccchHHHHHHhcccCCCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence            479999999999999999875  56666677654  4456777889999999999999999999877665

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Probab=96.60  E-value=0.0017  Score=64.11  Aligned_cols=70  Identities=21%  Similarity=0.264  Sum_probs=61.5

Q ss_pred             CccccCCCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      ++|+.||+|+|+++++.++....++++++.........+.+.+|++.||.||+....+........+.+.
T Consensus        37 lld~~m~~~~~~~~~~~lk~~~~~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~k~  106 (435)
T COG3706          37 LLDVMMPGMDGFELCRRLKAEPATVVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRLKC  106 (435)
T ss_pred             EeecccCCcCchhHHHHHhcCCcceEEEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccchh
Confidence            5799999999999999999886668888888888888899999999999999999999888887766554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=96.26  E-value=0.0043  Score=42.30  Aligned_cols=45  Identities=38%  Similarity=0.422  Sum_probs=38.1

Q ss_pred             ccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919          230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ  277 (277)
Q Consensus       230 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlq  277 (277)
                      |..||++=+.+|++||.+.|..  .-+.|...|+ .|-|..++++|.|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~   45 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQ   45 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHH
Confidence            5689999999999999999944  6889999998 8999999999853

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=94.11  E-value=0.069  Score=39.67  Aligned_cols=46  Identities=30%  Similarity=0.504  Sum_probs=30.6

Q ss_pred             ccChHHHHHHHHHHHhcCCCCCCcHHHHhh--c------------CCCC--CCHHHHhhccC
Q 045919          232 VWTSELHLKFIEAVSSLGDIKARPKLILQK--M------------NVPG--LTQRQVASHLQ  277 (277)
Q Consensus       232 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~--m------------~v~~--lt~~~v~shlq  277 (277)
                      +|.++|-.-|++|+...-.....+-+++..  |            ...|  =|+.+|.||+|
T Consensus         5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ   66 (68)
T smart00426        5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ   66 (68)
T ss_pred             cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence            799999999999999886222222122221  0            1244  47789999998

>PRK15029 arginine decarboxylase; Provisional

Probab=92.14  E-value=0.34  Score=51.17  Aligned_cols=69  Identities=16%  Similarity=0.120  Sum_probs=46.6

Q ss_pred             CccccCCCCCHH----HHHHHHHHc--CCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCCCH-HHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSL----SFVRVLVKE--EIPIILMSSRRN--EIFSWRALVEGACFFLEKPISF-DDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~----eLL~~Ire~--~iPVIllSs~~~--~~~v~~al~~GA~dyL~KPis~-eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+    ++++.|+..  .+|||++|+..+  ...... .-.-+.+|+.+--.. +.+...+....++..
T Consensus        58 LLD~~LPd~dG~~~~~ell~~IR~~~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  135 (755)
T PRK15029         58 MFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADFIAGRAVAAMTRYR  135 (755)
T ss_pred             EEECCCCCCccchhHHHHHHHHHhhCCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHHHHHHHHHHHHHHH
Confidence            589999999997    899999864  899999998875  222222 223466777775444 444455666555554

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=90.57  E-value=0.79  Score=48.11  Aligned_cols=66  Identities=18%  Similarity=0.216  Sum_probs=51.1

Q ss_pred             CccccCCCCCHHHHHHH-HHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRV-LVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY   66 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~-Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl   66 (277)
                      |+|+.||++.+...+.. +...   ..++|+++..........+...|+++|+.||+...+|...+....
T Consensus       581 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~  650 (919)
T PRK11107        581 LLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC  650 (919)
T ss_pred             EecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence            45778888776665544 3322   567788888888888889999999999999999999988887544

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=87.79  E-value=0.93  Score=42.43  Aligned_cols=44  Identities=14%  Similarity=0.006  Sum_probs=36.0

Q ss_pred             CCcEEEEe-cCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919           22 EIPIILMS-SRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS   65 (277)
Q Consensus        22 ~iPVIllS-s~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v   65 (277)
                      ...++++. ...+......+++.||.+||.+|++..+|..++..+
T Consensus        41 ~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~   85 (322)
T TIGR03815        41 RRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL   85 (322)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence            34455444 456788899999999999999999999999988765

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		5e-09

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           ++KPR++WT ELH KF+ AV  LG  +A PK IL  MNV  LT+  VASHLQ
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	9e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 77.3 bits (190), Expect = 9e-19
 Identities = 30/52 (57%), Positives = 37/52 (71%)

Query: 226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           ++KPR++WT ELH KF+ AV  LG  +A PK IL  MNV  LT+  VASHLQ
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 55/330 (16%), Positives = 101/330 (30%), Gaps = 88/330 (26%)

Query: 1   MANVDISNI-DSLSFVRVLVKEEIPIILMSSRRNE----IFSWRALVEGA----CF---- 47
           + N D  ++ D      +L KEEI  I+MS         +F W  L +       F    
Sbjct: 30  VDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQKFVEEV 86

Query: 48  ------FLEKPI-------SFDDLKYVWQHSYIY-----------KRRSKI-QLEDA--- 79
                 FL  PI       S     Y+ Q   +Y            R     +L  A   
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 80  RKPEQEILLNRGNISQGKRINEGGDDVSRNIANASATDDLRYSINADQNEKNNKQMEVDA 139
            +P + +L++ G +  GK       DV  +       D   + +N          +E+  
Sbjct: 147 LRPAKNVLID-GVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 140 QV-HIFDENSVKESQNACNMEQHLVMANDQIQEQGGLIKTK---RSL---DD-------- 184
           ++ +  D N    S ++ N++  +     +++    L+K+K     L    +        
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LLKSKPYENCLLVLLNVQNAKAWN 260

Query: 185 ------------------DRGGEKKRNLNSDNENSNSFMVPTEEKGKEMNENNNGHVKKK 226
                             D          S + +S +    T ++ K +         + 
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQD 317

Query: 227 RKPRIVWTSELHLKFIEAVSSLGDIKARPK 256
               ++ T+   L  I    S+ D  A   
Sbjct: 318 LPREVLTTNPRRLSIIAE--SIRDGLATWD 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.94
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	99.44
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	99.18
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	99.16
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	99.15
3h1g_A	129	Chemotaxis protein CHEY homolog; sulfate-bound CHE	99.14
2r25_B	133	Osmosensing histidine protein kinase SLN1; alpha5-	99.14
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	99.1
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	99.09
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	99.07
1zgz_A	122	Torcad operon transcriptional regulatory protein;	99.07
3crn_A	132	Response regulator receiver domain protein, CHEY-;	99.06
1i3c_A	149	Response regulator RCP1; phytochrome, signaling pr	99.05
2a9o_A	120	Response regulator; essential protein, YYCF/YYCG h	99.05
2qzj_A	136	Two-component response regulator; 11017X, PSI-II,	99.04
3cfy_A	137	Putative LUXO repressor protein; structural genomi	99.04
1jbe_A	128	Chemotaxis protein CHEY; signaling protein; 1.08A	99.04
3luf_A	259	Two-component system response regulator/ggdef doma	99.03
1xhf_A	123	DYE resistance, aerobic respiration control protei	99.03
3jte_A	143	Response regulator receiver protein; structural ge	99.02
1zh2_A	121	KDP operon transcriptional regulatory protein KDPE	99.02
4dad_A	146	Putative pilus assembly-related protein; response	99.02
1srr_A	124	SPO0F, sporulation response regulatory protein; as	99.01
3rqi_A	184	Response regulator protein; structural genomics, s	99.01
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	99.01
3r0j_A	250	Possible two component system response transcript	99.01
3m6m_D	143	Sensory/regulatory protein RPFC; RPFF, REC, enoyl-	99.01
3kto_A	136	Response regulator receiver protein; PSI-II,struct	99.0
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	99.0
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	98.99
3hdg_A	137	Uncharacterized protein; two-component sensor acti	98.99
3heb_A	152	Response regulator receiver domain protein (CHEY);	98.99
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	98.99
3gt7_A	154	Sensor protein; structural genomics, signal receiv	98.98
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	98.98
2lpm_A	123	Two-component response regulator; transcription re	98.98
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	98.98
2zay_A	147	Response regulator receiver protein; structural ge	98.97
1p6q_A	129	CHEY2; chemotaxis, signal transduction, response r	98.97
1dz3_A	130	Stage 0 sporulation protein A; response regulator,	98.97
3eul_A	152	Possible nitrate/nitrite response transcriptional	98.97
3lua_A	140	Response regulator receiver protein; two-component	98.96
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	98.96
3f6c_A	134	Positive transcription regulator EVGA; structural	98.95
1a04_A	215	Nitrate/nitrite response regulator protein NARL; s	98.95
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	98.95
1mb3_A	124	Cell division response regulator DIVK; signal tran	98.94
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	98.93
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	98.93
3cnb_A	143	DNA-binding response regulator, MERR family; signa	98.93
3nhm_A	133	Response regulator; protein structure initiative I	98.93
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	98.93
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	98.93
2jk1_A	139	HUPR, hydrogenase transcriptional regulatory prote	98.92
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	98.92
1yio_A	208	Response regulatory protein; transcription regulat	98.92
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	98.91
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	98.9
3klo_A	225	Transcriptional regulator VPST; REC domain, HTH do	98.9
3grc_A	140	Sensor protein, kinase; protein structure initiati	98.9
2ayx_A	254	Sensor kinase protein RCSC; two independent struct	98.89
3cg0_A	140	Response regulator receiver modulated diguanylate	98.88
2jba_A	127	Phosphate regulon transcriptional regulatory PROT;	98.88
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	98.87
1s8n_A	205	Putative antiterminator; RV1626, structural genomi	98.87
1dcf_A	136	ETR1 protein; beta-alpha five sandwich, transferas	98.87
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	98.86
3q9s_A	249	DNA-binding response regulator; DNA binding protei	98.86
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	98.86
1p2f_A	220	Response regulator; DRRB, OMPR/PHOB, transcription	98.86
3n53_A	140	Response regulator receiver modulated diguanylate;	98.86
3mm4_A	206	Histidine kinase homolog; receiver domain, CKI1, c	98.85
1w25_A	459	Stalked-cell differentiation controlling protein;	98.84
2rjn_A	154	Response regulator receiver:metal-dependent phosph	98.84
2qxy_A	142	Response regulator; regulation of transcription, N	98.84
3cz5_A	153	Two-component response regulator, LUXR family; str	98.83
3n0r_A	286	Response regulator; sigma factor, receiver, two-co	98.82
3i42_A	127	Response regulator receiver domain protein (CHEY-	98.82
3c3m_A	138	Response regulator receiver protein; structural ge	98.81
2qr3_A	140	Two-component system response regulator; structura	98.81
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	98.8
3bre_A	358	Probable two-component response regulator; protein	98.79
1qo0_D	196	AMIR; binding protein, gene regulator, receptor; 2	98.78
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	98.78
2qv0_A	143	Protein MRKE; structural genomics, transcription,	98.78
3eqz_A	135	Response regulator; structural genomics, unknown f	98.78
1ys7_A	233	Transcriptional regulatory protein PRRA; response	98.77
2qvg_A	143	Two component response regulator; NYSGXRC, PSI-2,	98.76
3eq2_A	394	Probable two-component response regulator; adaptor	98.75
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	98.74
3lte_A	132	Response regulator; structural genomics, PSI, prot	98.73
2oqr_A	230	Sensory transduction protein REGX3; response regul	98.73
2gwr_A	238	DNA-binding response regulator MTRA; two-component	98.72
2qsj_A	154	DNA-binding response regulator, LUXR family; struc	98.72
3c3w_A	225	Two component transcriptional regulatory protein;	98.68
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	98.68
3luf_A	259	Two-component system response regulator/ggdef doma	98.67
2gkg_A	127	Response regulator homolog; social motility, recei	98.65
1dc7_A	124	NTRC, nitrogen regulation protein; receiver domain	98.64
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	98.62
3kyj_B	145	CHEY6 protein, putative histidine protein kinase;	98.59
2rdm_A	132	Response regulator receiver protein; structural ge	98.55
3sy8_A	400	ROCR; TIM barrel phosphodiesterase-A, transcriptio	98.53
3c97_A	140	Signal transduction histidine kinase; structural g	98.5
2hqr_A	223	Putative transcriptional regulator; phosporylation	98.48
2j48_A	119	Two-component sensor kinase; pseudo-receiver, circ	98.45
1a2o_A	349	CHEB methylesterase; bacterial chemotaxis, adaptat	98.35
2b4a_A	138	BH3024; flavodoxin-like fold, structural genomics,	98.3
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	98.18
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	98.12
1w25_A	459	Stalked-cell differentiation controlling protein;	97.94
3q7r_A	121	Transcriptional regulatory protein; CHXR, receiver	92.4
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	91.65
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	91.16

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.94  E-value=8.1e-28  Score=174.65  Aligned_cols=54  Identities=56%  Similarity=0.824  Sum_probs=52.4

Q ss_pred             CCCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919          224 KKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ  277 (277)
Q Consensus       224 ~~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlq  277 (277)
                      ++.+|+|++||+|||++||+||++||.++||||+||++|+|+|||++|||||||
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ   54 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ   54 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence            467999999999999999999999999999999999999999999999999998

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=99.44  E-value=1.8e-13  Score=112.35  Aligned_cols=68  Identities=10%  Similarity=0.283  Sum_probs=63.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+|||+++++.|+..    .+|||++|+........+++.+||++||.|||++++|..+|++++++
T Consensus        62 llD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R  133 (134)
T 3to5_A           62 VTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER  133 (134)
T ss_dssp             EEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred             EEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence            589999999999999999864    79999999999999999999999999999999999999999988764

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=99.18  E-value=6.6e-11  Score=92.19  Aligned_cols=67  Identities=21%  Similarity=0.278  Sum_probs=62.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr   67 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+......++..||++||.||+++++|..+++++++
T Consensus        51 llD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~  121 (122)
T 3gl9_A           51 VLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN  121 (122)
T ss_dssp             EECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred             EEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence            579999999999999999864    7999999999999999999999999999999999999999988764

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=99.16  E-value=5.2e-11  Score=92.33  Aligned_cols=68  Identities=24%  Similarity=0.336  Sum_probs=62.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++.. .+|||++|+..+......++..||++||.||++.++|..+++.++++
T Consensus        51 i~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~  119 (120)
T 3f6p_A           51 LLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR  119 (120)
T ss_dssp             EEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence            579999999999999999865 89999999999999999999999999999999999999999888754

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=99.15  E-value=1.2e-10  Score=92.29  Aligned_cols=70  Identities=17%  Similarity=0.335  Sum_probs=63.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus        53 l~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~  126 (136)
T 3t6k_A           53 ICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT  126 (136)
T ss_dssp             EEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred             EEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence            579999999999999999863    7999999999999999999999999999999999999999999987654

>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A

Probab=99.14  E-value=1.4e-10  Score=90.79  Aligned_cols=68  Identities=21%  Similarity=0.325  Sum_probs=62.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+......++..||++||.||+++++|..+++.++..
T Consensus        56 i~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~  127 (129)
T 3h1g_A           56 ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT  127 (129)
T ss_dssp             EECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence            479999999999999999863    78999999999999999999999999999999999999999988753

>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B

Probab=99.14  E-value=7.8e-11  Score=93.13  Aligned_cols=69  Identities=20%  Similarity=0.271  Sum_probs=62.6

Q ss_pred             CccccCCCCCHHHHHHHHHH-c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVK-E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire-~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++. .  .+|||++|+..+......++..||++||.||++.++|..+++.++...
T Consensus        57 llD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~  128 (133)
T 2r25_B           57 FMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY  128 (133)
T ss_dssp             EECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred             EEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence            58999999999999999986 3  789999999999999999999999999999999999999998876543

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=99.10  E-value=4.6e-10  Score=85.95  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||+++++|..+++.++++.
T Consensus        49 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~  119 (121)
T 2pl1_A           49 IVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN  119 (121)
T ss_dssp             EECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence            579999999999999999865  799999999999999999999999999999999999999999988754

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=99.09  E-value=3e-10  Score=88.19  Aligned_cols=68  Identities=18%  Similarity=0.289  Sum_probs=62.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++..||++||.||++.++|..+++.++++
T Consensus        52 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~  121 (126)
T 1dbw_A           52 VTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH  121 (126)
T ss_dssp             EEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred             EEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence            579999999999999999875  79999999999999999999999999999999999999999988754

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=99.07  E-value=4e-10  Score=88.63  Aligned_cols=70  Identities=13%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.+++.  .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus        54 ilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~  125 (133)
T 3b2n_A           54 ILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK  125 (133)
T ss_dssp             EECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred             EEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence            579999999999999999875  7999999999999999999999999999999999999999998876543

>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1

Probab=99.07  E-value=5.9e-10  Score=85.67  Aligned_cols=69  Identities=20%  Similarity=0.317  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.+++. .+|||++++..+......++..||++||.||++.++|...++.++++.
T Consensus        51 i~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~  120 (122)
T 1zgz_A           51 LLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI  120 (122)
T ss_dssp             EEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence            579999999999999999875 799999999999988899999999999999999999999999988764

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=99.06  E-value=5.7e-10  Score=87.64  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=64.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|..+++.++++..
T Consensus        52 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  123 (132)
T 3crn_A           52 LFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE  123 (132)
T ss_dssp             EECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence            579999999999999999864  7999999999999999999999999999999999999999999887654

>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A

Probab=99.05  E-value=8.4e-10  Score=88.60  Aligned_cols=70  Identities=14%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.+++.    .+|||++++..+......++..||++||.||++.++|..+++.+++...
T Consensus        66 llD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  139 (149)
T 1i3c_A           66 LLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL  139 (149)
T ss_dssp             EECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence            579999999999999999864    6899999999998899999999999999999999999999999876553

>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*

Probab=99.05  E-value=6.2e-10  Score=84.90  Aligned_cols=68  Identities=22%  Similarity=0.324  Sum_probs=62.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++.. .+|||++++.........++..||++||.||++.++|..+++.++++
T Consensus        50 l~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~  118 (120)
T 2a9o_A           50 ILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR  118 (120)
T ss_dssp             EECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred             EEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence            579999999999999999865 89999999999988889999999999999999999999999988764

>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}

Probab=99.04  E-value=5.4e-10  Score=88.55  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=65.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++.. .+|||+++..........++..||++||.||+++++|..+++.++++...
T Consensus        53 llD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~  124 (136)
T 2qzj_A           53 FLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNS  124 (136)
T ss_dssp             EEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhhh
Confidence            579999999999999999866 89999999999999999999999999999999999999999998876543

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.04  E-value=9.4e-10  Score=87.25  Aligned_cols=70  Identities=17%  Similarity=0.259  Sum_probs=64.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.+++.  .+|||++++..+......++..||++||.||++.++|..+++.++++..
T Consensus        53 llD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  124 (137)
T 3cfy_A           53 ILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK  124 (137)
T ss_dssp             EECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            579999999999999999875  7899999999999999999999999999999999999999999887654

>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...

Probab=99.04  E-value=1e-09  Score=85.01  Aligned_cols=69  Identities=14%  Similarity=0.308  Sum_probs=63.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..    .+|||++++..+......++..||++||.||++.++|..+++.++++.
T Consensus        54 i~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~  126 (128)
T 1jbe_A           54 ISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL  126 (128)
T ss_dssp             EEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence            579999999999999999862    789999999999999999999999999999999999999999988653

>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*

Probab=99.03  E-value=4.5e-10  Score=100.11  Aligned_cols=71  Identities=27%  Similarity=0.371  Sum_probs=65.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.+++.    .+|||++|+........+++..||++||.||+++++|..++++++++...
T Consensus       174 llD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~  248 (259)
T 3luf_A          174 LVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ  248 (259)
T ss_dssp             EECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred             EEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence            579999999999999999864    68999999999999999999999999999999999999999999887653

>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A

Probab=99.03  E-value=8.9e-10  Score=84.76  Aligned_cols=69  Identities=17%  Similarity=0.306  Sum_probs=63.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|+|++++..+......++..||++||.||+++++|..+++.++++.
T Consensus        52 i~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~  121 (123)
T 1xhf_A           52 IMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT  121 (123)
T ss_dssp             EECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence            579999999999999999865 899999999999888899999999999999999999999999888654

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=99.02  E-value=1.1e-09  Score=86.51  Aligned_cols=71  Identities=18%  Similarity=0.353  Sum_probs=65.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|..+|+.+++++..
T Consensus        54 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~  126 (143)
T 3jte_A           54 ITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL  126 (143)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence            579999999999999999875  79999999999999999999999999999999999999999999987653

>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A

Probab=99.02  E-value=7.1e-10  Score=84.70  Aligned_cols=69  Identities=25%  Similarity=0.384  Sum_probs=63.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|+|++++..+......++..|+++||.||++.++|..+++.++++.
T Consensus        50 i~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~  119 (121)
T 1zh2_A           50 ILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH  119 (121)
T ss_dssp             EEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence            578999999999999999854 899999999999988999999999999999999999999999888754

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=99.02  E-value=3.6e-10  Score=89.90  Aligned_cols=70  Identities=13%  Similarity=0.098  Sum_probs=64.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|..+|..+++++.
T Consensus        72 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~  143 (146)
T 4dad_A           72 MIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA  143 (146)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred             EEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence            579999999999999999865  8999999999999999999999999999999999999999999987653

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=99.01  E-value=5.1e-10  Score=86.47  Aligned_cols=67  Identities=15%  Similarity=0.257  Sum_probs=61.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr   67 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++..|+++||.||++.++|..+++.+++
T Consensus        52 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~  120 (124)
T 1srr_A           52 LLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP  120 (124)
T ss_dssp             EEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred             EEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence            579999999999999999864  8999999999999889999999999999999999999999987764

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=99.01  E-value=2.3e-10  Score=95.76  Aligned_cols=70  Identities=17%  Similarity=0.234  Sum_probs=65.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++..||++||.||+++++|..+|+.+++...
T Consensus        56 l~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~  127 (184)
T 3rqi_A           56 TVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ  127 (184)
T ss_dssp             EECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred             EEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence            589999999999999999875  8999999999999999999999999999999999999999998887655

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=99.01  E-value=7.1e-10  Score=84.97  Aligned_cols=66  Identities=15%  Similarity=0.250  Sum_probs=60.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY   66 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl   66 (277)
                      |+|+.||+++|+++++.+++.  .+|||++++..+......++..||++||.||+++++|..+++.++
T Consensus        52 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~  119 (120)
T 1tmy_A           52 TMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS  119 (120)
T ss_dssp             EEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred             EEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence            579999999999999999864  799999999999999999999999999999999999999988764

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=99.01  E-value=1.1e-09  Score=95.86  Aligned_cols=70  Identities=16%  Similarity=0.282  Sum_probs=65.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++.+||++||.||+++++|..+|+.++++..
T Consensus        72 llD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~  143 (250)
T 3r0j_A           72 ILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG  143 (250)
T ss_dssp             EEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999876  7999999999999999999999999999999999999999999988754

>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}

Probab=99.01  E-value=9e-10  Score=88.17  Aligned_cols=69  Identities=16%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc------CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE------EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~------~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..      .+|||++|+..+......++..||++||.||++.++|..++..+....
T Consensus        63 l~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~  137 (143)
T 3m6m_D           63 IVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST  137 (143)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC---
T ss_pred             EEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhh
Confidence            579999999999999999742      589999999999999999999999999999999999999998876543

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=99.00  E-value=9.8e-10  Score=86.71  Aligned_cols=71  Identities=23%  Similarity=0.263  Sum_probs=65.7

Q ss_pred             CccccCCC--CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISN--IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpd--mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+  ++|+++++.++..  .+|||++|+..+......++..||++||.||++.++|..+|++++.....
T Consensus        55 i~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~  129 (136)
T 3kto_A           55 IIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE  129 (136)
T ss_dssp             EEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred             EEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence            57999999  9999999999876  89999999999999999999999999999999999999999999887653

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=99.00  E-value=1.3e-09  Score=87.61  Aligned_cols=72  Identities=14%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEG-ACFFLEKPISFDDLKYVWQHSYIYKRRS   72 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~G-A~dyL~KPis~eeL~~~Lq~vlr~~~~~   72 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..| |++||.||++.++|..+|..+++++...
T Consensus        63 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~~  137 (153)
T 3hv2_A           63 ISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSE  137 (153)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHHH
Confidence            579999999999999999875  89999999999999999999999 9999999999999999999999877643

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=98.99  E-value=1.3e-09  Score=86.49  Aligned_cols=71  Identities=11%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++.  .  .+|||++++..+......++..||++||.||+ +.++|..+|+.++++...
T Consensus        56 i~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~  131 (144)
T 3kht_A           56 ILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT  131 (144)
T ss_dssp             EECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence            57999999999999999987  2  89999999999999999999999999999999 999999999999988763

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=98.99  E-value=1e-09  Score=86.12  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|..+|+.+++....
T Consensus        56 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~  128 (137)
T 3hdg_A           56 ITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA  128 (137)
T ss_dssp             EECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence            579999999999999999876  89999999999999999999999999999999999999999999888764

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=98.99  E-value=1.9e-09  Score=86.49  Aligned_cols=69  Identities=9%  Similarity=0.393  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.  .  .+|||++++..+......++..||++||.||+++++|..+|+.+.+..
T Consensus        64 ilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~  136 (152)
T 3heb_A           64 LLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF  136 (152)
T ss_dssp             EECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence            57999999999999999987  3  899999999999999999999999999999999999999999986554

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}

Probab=98.99  E-value=4.2e-10  Score=89.75  Aligned_cols=70  Identities=20%  Similarity=0.299  Sum_probs=58.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.+++.  .+|||++|+..+......++..||++||.||++.++|..+++.++++..
T Consensus        54 llD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  125 (141)
T 3cu5_A           54 LTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL  125 (141)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            579999999999999999864  7999999998887778889999999999999999999999999887654

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=98.98  E-value=1.7e-09  Score=87.43  Aligned_cols=71  Identities=24%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..    .+|||++++..+......++..||++||.||++.++|..+|+.++++...
T Consensus        56 i~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~  130 (154)
T 3gt7_A           56 ISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR  130 (154)
T ss_dssp             EEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred             EEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            579999999999999999864    78999999999999999999999999999999999999999999887653

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=98.98  E-value=2.3e-09  Score=83.52  Aligned_cols=71  Identities=11%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..    .+|||++++..+......++..|+++||.||++.++|..+++.++++...
T Consensus        60 i~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~  134 (140)
T 1k68_A           60 LLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS  134 (140)
T ss_dssp             EECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred             EEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence            578999999999999999874    68999999999999999999999999999999999999999999887653

>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}

Probab=98.98  E-value=1.8e-11  Score=99.05  Aligned_cols=63  Identities=16%  Similarity=0.227  Sum_probs=55.2

Q ss_pred             CccccCCCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY   66 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl   66 (277)
                      |+|+.||+|+|+++++.+++.++|||++|+..+...   +..+|+++||.|||++++|..++.+++
T Consensus        58 llDi~mP~~~G~el~~~lr~~~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~  120 (123)
T 2lpm_A           58 IIDVNLDGEPSYPVADILAERNVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS  120 (123)
T ss_dssp             EECSSSSSCCSHHHHHHHHHTCCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred             EEecCCCCCCHHHHHHHHHcCCCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence            589999999999999999988999999999876543   346799999999999999999887654

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=98.98  E-value=1.4e-09  Score=87.18  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|..+|+.+++++.
T Consensus        71 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~  142 (150)
T 4e7p_A           71 ILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK  142 (150)
T ss_dssp             EECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence            579999999999999999876  8999999999999999999999999999999999999999999987654

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=98.97  E-value=2.2e-09  Score=85.21  Aligned_cols=72  Identities=19%  Similarity=0.259  Sum_probs=65.2

Q ss_pred             CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919            1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS   72 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~   72 (277)
                      |+|+.||+++|+++++.++.  .  .+|||+++...+......++..||++||.||++.++|..+|+.++++....
T Consensus        57 i~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~  132 (147)
T 2zay_A           57 ITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYED  132 (147)
T ss_dssp             EEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred             EEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence            57999999999999999987  3  899999999999999999999999999999999999999999998876643

>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A

Probab=98.97  E-value=8.3e-10  Score=85.64  Aligned_cols=68  Identities=15%  Similarity=0.351  Sum_probs=62.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+......++..|+++||.||++.++|..+++.++++
T Consensus        56 l~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~  127 (129)
T 1p6q_A           56 ISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA  127 (129)
T ss_dssp             EECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            579999999999999999863    78999999999998899999999999999999999999999988754

>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*

Probab=98.97  E-value=8.5e-10  Score=86.04  Aligned_cols=69  Identities=17%  Similarity=0.343  Sum_probs=62.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..   .+|||++++..+......++..||++||.||+++++|..+++.++++.
T Consensus        53 llD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~  124 (130)
T 1dz3_A           53 LLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT  124 (130)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred             EEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence            579999999999999999863   688999999999999999999999999999999999999999887654

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=98.97  E-value=1.9e-09  Score=86.43  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|..+|+.++++..
T Consensus        66 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~  137 (152)
T 3eul_A           66 LLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD  137 (152)
T ss_dssp             EEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence            579999999999999999876  8999999999999999999999999999999999999999999987654

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=98.96  E-value=6.3e-10  Score=87.90  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=63.9

Q ss_pred             CccccCC-CCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDIS-NIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mp-dmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.|| +++|+++++.++.  .  .+|||++++..+......++..||++||.||++.++|..+|+.++++...
T Consensus        55 i~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~  130 (140)
T 3lua_A           55 IMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR  130 (140)
T ss_dssp             EECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred             EEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence            5799999 9999999999987  3  89999999999999999999999999999999999999999998876653

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=98.96  E-value=4.7e-10  Score=88.25  Aligned_cols=68  Identities=12%  Similarity=0.032  Sum_probs=62.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++..||++||.||+++++|..+++.+++.
T Consensus        64 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~  133 (135)
T 3snk_A           64 ILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG  133 (135)
T ss_dssp             EEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred             EEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence            579999999999999999876  79999999999999999999999999999999999999999887654

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=98.95  E-value=6.7e-10  Score=86.70  Aligned_cols=70  Identities=17%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|..+++.++++..
T Consensus        51 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~  122 (134)
T 3f6c_A           51 IIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC  122 (134)
T ss_dssp             EEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred             EEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence            579999999999999999876  8999999999988888999999999999999999999999999887654

>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A

Probab=98.95  E-value=2.3e-09  Score=91.12  Aligned_cols=69  Identities=19%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||+++++|..+++.++++.
T Consensus        56 llD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~  126 (215)
T 1a04_A           56 LLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE  126 (215)
T ss_dssp             EEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred             EEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence            579999999999999999876  789999999999999999999999999999999999999999988754

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=98.95  E-value=1.6e-09  Score=84.79  Aligned_cols=70  Identities=17%  Similarity=0.274  Sum_probs=62.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||++.++|..+++.++++..
T Consensus        52 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~  123 (136)
T 1mvo_A           52 VLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE  123 (136)
T ss_dssp             EEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred             EEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence            579999999999999999875  7899999998888778899999999999999999999999998886543

>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A

Probab=98.94  E-value=1e-09  Score=84.35  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=56.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.+++.    .+|||++++.........++..||++||.||++.++|..+++.++++
T Consensus        50 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~  121 (124)
T 1mb3_A           50 LMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER  121 (124)
T ss_dssp             EEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred             EEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence            579999999999999999863    78999999988888888999999999999999999999999887643

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=98.93  E-value=3.5e-09  Score=83.47  Aligned_cols=70  Identities=16%  Similarity=0.260  Sum_probs=64.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..    .+|||++++..+......++..|+++||.||++.++|..+++.++++..
T Consensus        67 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~  140 (149)
T 1k66_A           67 LLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL  140 (149)
T ss_dssp             EECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            578999999999999999863    7899999999999999999999999999999999999999999988765

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=98.93  E-value=3e-09  Score=83.36  Aligned_cols=70  Identities=16%  Similarity=0.250  Sum_probs=62.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..   .+|||++++..+......++..||++||.||++.++|..+|++++....
T Consensus        57 i~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~  129 (136)
T 3hdv_A           57 ITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE  129 (136)
T ss_dssp             EECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred             EEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence            579999999999999999864   6899999999999999999999999999999999999999998876654

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=98.93  E-value=3.5e-09  Score=83.13  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++.  .  .+|||+++...+......++..||++||.||++.++|..+|+.++++..
T Consensus        59 i~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~  132 (143)
T 3cnb_A           59 MLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK  132 (143)
T ss_dssp             EEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred             EEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence            57899999999999999987  3  7999999999999999999999999999999999999999999987655

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=98.93  E-value=2e-09  Score=83.81  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=59.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..    .+|||++++..+... ..++..|+++||.||+++++|..+++.++++...
T Consensus        52 i~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~  125 (133)
T 3nhm_A           52 ISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA  125 (133)
T ss_dssp             EECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred             EEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence            579999999999999999874    799999999887777 8899999999999999999999999999988764

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=98.93  E-value=1.6e-09  Score=87.86  Aligned_cols=67  Identities=15%  Similarity=0.298  Sum_probs=62.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr   67 (277)
                      |+|+.||+++|+++++.|+..  .+|||+++...+......++..||++||.||++.++|..+|+.+++
T Consensus        88 ilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~  156 (157)
T 3hzh_A           88 TLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV  156 (157)
T ss_dssp             EECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred             EEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence            579999999999999999875  8999999999999999999999999999999999999999987754

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=98.93  E-value=1.4e-09  Score=84.63  Aligned_cols=69  Identities=16%  Similarity=0.278  Sum_probs=56.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||+ +.++|..+++.+++++
T Consensus        56 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~  127 (130)
T 3eod_A           56 ICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS  127 (130)
T ss_dssp             EECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred             EEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence            578999999999999999876  79999999999999999999999999999999 8999999999988654

>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B

Probab=98.92  E-value=3.3e-09  Score=83.80  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHc-CCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVE-GACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~-GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|+|++++..+......++.. ||++||.||++.++|..+++.+++...
T Consensus        49 l~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  121 (139)
T 2jk1_A           49 ICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT  121 (139)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence            579999999999999999864  7899999998887777888875 599999999999999999999887654

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=98.92  E-value=3.6e-09  Score=84.89  Aligned_cols=71  Identities=14%  Similarity=0.221  Sum_probs=65.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEG-ACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~G-A~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..| +++||.||++.++|..+|..++++...
T Consensus        53 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~  126 (151)
T 3kcn_A           53 MVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL  126 (151)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            579999999999999999865  89999999999999999999999 999999999999999999999987654

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=98.92  E-value=1.6e-09  Score=91.56  Aligned_cols=70  Identities=19%  Similarity=0.317  Sum_probs=64.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus        53 l~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~  124 (208)
T 1yio_A           53 VLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA  124 (208)
T ss_dssp             EEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhh
Confidence            579999999999999999875  8999999999888888899999999999999999999999999987654

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=98.91  E-value=9.7e-10  Score=87.16  Aligned_cols=72  Identities=8%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             CccccCCC-CCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919            1 MANVDISN-IDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS   72 (277)
Q Consensus         1 IlDl~mpd-mdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~   72 (277)
                      |+|+.||+ ++|+++++.++.. .+|||++++..+......++..||++||.||++.++|..+|+.++++++..
T Consensus        55 i~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~  128 (140)
T 3h5i_A           55 LMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN  128 (140)
T ss_dssp             EEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence            57999985 9999999999875 899999999988887888999999999999999999999999999887643

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=98.90  E-value=5e-09  Score=82.49  Aligned_cols=69  Identities=12%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             CccccCCCCCHHHHHHHHHH----c--CCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVK----E--EIPIILMSSRRNEIFSWRALVEG-ACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire----~--~iPVIllSs~~~~~~v~~al~~G-A~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.    .  .+|||++++..+......++..| |++||.||++.++|..+|+++....
T Consensus        65 i~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~  140 (146)
T 3ilh_A           65 CIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG  140 (146)
T ss_dssp             EEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred             EEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence            57999999999999999987    3  89999999999999999999999 9999999999999999998876544

>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*

Probab=98.90  E-value=6.2e-10  Score=95.86  Aligned_cols=70  Identities=6%  Similarity=-0.099  Sum_probs=64.2

Q ss_pred             CccccCCCCCHHHHHHHHHH-c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVK-E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire-~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++. .  .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus        59 llD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~  131 (225)
T 3klo_A           59 VIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM  131 (225)
T ss_dssp             EEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence            58999999999999999987 3  8999999999888888899999999999999999999999999987643

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=98.90  E-value=1.3e-09  Score=85.91  Aligned_cols=71  Identities=18%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHH-HHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSW-RALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~-~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++.  .  .+|||++++..+..... .++..||++||.||++.++|..+|+.++++...
T Consensus        55 i~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~  130 (140)
T 3grc_A           55 TVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE  130 (140)
T ss_dssp             EECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred             EEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence            57999999999999999986  3  89999999987776666 888999999999999999999999999988764

>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A

Probab=98.89  E-value=3.5e-09  Score=93.75  Aligned_cols=71  Identities=20%  Similarity=0.285  Sum_probs=65.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.|++.  .+|||++|+.........++..|+++||.||++.++|..++.+++++.+.
T Consensus       178 l~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~  250 (254)
T 2ayx_A          178 LSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRK  250 (254)
T ss_dssp             EEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhhh
Confidence            579999999999999999865  89999999999889999999999999999999999999999998877653

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=98.88  E-value=7.1e-09  Score=81.22  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=65.0

Q ss_pred             CccccCC-CCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDIS-NIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mp-dmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.|| +++|+++++.++.. .+|||+++...+......++..|+++||.||++.++|..+++.++++...
T Consensus        59 i~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~  131 (140)
T 3cg0_A           59 LVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL  131 (140)
T ss_dssp             EEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence            5789998 79999999999875 89999999999999999999999999999999999999999999877653

>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A

Probab=98.88  E-value=9.5e-10  Score=84.88  Aligned_cols=69  Identities=22%  Similarity=0.282  Sum_probs=62.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.+++.    .+|||++++..+......++..||++||.||+++++|...++.++++.
T Consensus        51 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~  123 (127)
T 2jba_A           51 LLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI  123 (127)
T ss_dssp             EEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred             EEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence            578999999999999999863    789999999988888889999999999999999999999999887653

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=98.87  E-value=6.3e-09  Score=83.63  Aligned_cols=71  Identities=21%  Similarity=0.416  Sum_probs=65.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..  .+|||+++...+......++..|+++||.||++.++|..+++.+++++..
T Consensus        52 ild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~  124 (155)
T 1qkk_A           52 ISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL  124 (155)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999865  89999999998888899999999999999999999999999999877653

>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A

Probab=98.87  E-value=2.5e-09  Score=90.38  Aligned_cols=70  Identities=21%  Similarity=0.268  Sum_probs=64.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++.. ..|||++|+..+......++..||++||.||+++++|..+|+.++++..
T Consensus        63 i~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  133 (205)
T 1s8n_A           63 IMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR  133 (205)
T ss_dssp             EEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            579999999999999999876 6699999999988889999999999999999999999999999987764

>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2

Probab=98.87  E-value=3.8e-09  Score=82.92  Aligned_cols=68  Identities=13%  Similarity=0.191  Sum_probs=59.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc------CC-cEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE------EI-PIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~------~i-PVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.+++.      .. |||++|+..+......++..||++||.||++.++|..+++.+++.
T Consensus        55 llD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~  129 (136)
T 1dcf_A           55 FMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP  129 (136)
T ss_dssp             EEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred             EEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence            579999999999999999742      23 577899998888889999999999999999999999999887654

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=98.86  E-value=1.7e-09  Score=101.96  Aligned_cols=70  Identities=20%  Similarity=0.349  Sum_probs=65.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+|+|+++++.++..  .+|||++|+..+.....+++..||++||.||+++++|..+|++++....
T Consensus        49 llDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~  120 (368)
T 3dzd_A           49 VLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS  120 (368)
T ss_dssp             EEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence            589999999999999999865  8999999999999999999999999999999999999999999988754

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=98.86  E-value=2.1e-09  Score=94.81  Aligned_cols=70  Identities=24%  Similarity=0.284  Sum_probs=65.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++.. .+|||++|+..+...+..++..||++||.||+++++|..+|+.++++..
T Consensus        86 llD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~  156 (249)
T 3q9s_A           86 LLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT  156 (249)
T ss_dssp             EEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred             EEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence            589999999999999999876 8999999999999999999999999999999999999999999887643

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=98.86  E-value=4.2e-09  Score=89.78  Aligned_cols=70  Identities=14%  Similarity=0.262  Sum_probs=64.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus        51 llD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~  122 (225)
T 1kgs_A           51 ILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS  122 (225)
T ss_dssp             EEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence            579999999999999999875  8999999999988889999999999999999999999999999988754

>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*

Probab=98.86  E-value=6.2e-09  Score=88.77  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||+++++|..+++.++++..
T Consensus        48 llD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~  119 (220)
T 1p2f_A           48 VLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK  119 (220)
T ss_dssp             EEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence            579999999999999999865  8999999999999999999999999999999999999999999987743

>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0

Probab=98.86  E-value=1.3e-09  Score=86.01  Aligned_cols=70  Identities=23%  Similarity=0.271  Sum_probs=54.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..    .+|||++++..+......++..||++||.||++.++|..+++.+++++.
T Consensus        51 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~  124 (140)
T 3n53_A           51 ILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN  124 (140)
T ss_dssp             EEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence            579999999999999999864    7999999999888888889999999999999999999999999988765

>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A

Probab=98.85  E-value=4.4e-09  Score=90.01  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=58.5

Q ss_pred             CccccCCCCCHHHHHHHHHH------cCCcEEEEecCC-CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVK------EEIPIILMSSRR-NEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire------~~iPVIllSs~~-~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.|+.      ..+|||++|+.. +......++..||++||.||++  +|..+|+.+++++.
T Consensus       124 llD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~  198 (206)
T 3mm4_A          124 FMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH  198 (206)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred             EEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence            58999999999999999986      379999999987 7788889999999999999998  89999988887654

>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*

Probab=98.84  E-value=7.6e-09  Score=98.31  Aligned_cols=70  Identities=24%  Similarity=0.294  Sum_probs=64.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+......++..||++||.||+++++|..+++.+++...
T Consensus        50 llD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~  123 (459)
T 1w25_A           50 LLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL  123 (459)
T ss_dssp             EEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            589999999999999999863    6899999999999999999999999999999999999999999887543

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=98.84  E-value=9e-09  Score=82.60  Aligned_cols=71  Identities=17%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEG-ACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~G-A~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..| |++||.||++.++|..+|..++++...
T Consensus        56 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~  129 (154)
T 2rjn_A           56 ISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFL  129 (154)
T ss_dssp             EEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999865  89999999998888899999998 999999999999999999999877653

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=98.84  E-value=4.6e-09  Score=82.85  Aligned_cols=70  Identities=19%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+ ||+++|+++++.++..  .+|||++++..+......++..|+++||.||++.++|..+++.++++...
T Consensus        53 i~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~  124 (142)
T 2qxy_A           53 FVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR  124 (142)
T ss_dssp             EEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred             EEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence            5788 9999999999999865  79999999999999999999999999999999999999999999877654

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=98.83  E-value=5.2e-09  Score=83.92  Aligned_cols=70  Identities=13%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||+++...+......++..||++||.||++.++|..+++.++++..
T Consensus        56 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~  127 (153)
T 3cz5_A           56 VMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR  127 (153)
T ss_dssp             EECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred             EEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence            578999999999999999875  8999999999999999999999999999999999999999998876654

>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A

Probab=98.82  E-value=6.4e-10  Score=101.16  Aligned_cols=69  Identities=13%  Similarity=0.343  Sum_probs=61.3

Q ss_pred             CccccCC-CCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDIS-NIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mp-dmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.|| +|||+++++.|+.. .+|||++|+..+  ...+++..||++||.||+++++|..+|..++.....
T Consensus       210 l~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~  280 (286)
T 3n0r_A          210 LADIQLADGSSGIDAVKDILGRMDVPVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPR  280 (286)
T ss_dssp             EEESCCTTSCCTTTTTHHHHHHTTCCEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCC
T ss_pred             EEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCc
Confidence            5899999 79999999999866 999999999753  456788999999999999999999999999987653

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=98.82  E-value=3.2e-09  Score=82.23  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=58.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..    .+|||++++..+... ..++..||++||.||++.++|...+++..+...
T Consensus        52 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~  124 (127)
T 3i42_A           52 FIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHHH  124 (127)
T ss_dssp             EEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred             EEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence            579999999999999999864    799999999888777 788999999999999999999999998766543

>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}

Probab=98.81  E-value=6e-09  Score=82.31  Aligned_cols=69  Identities=10%  Similarity=0.191  Sum_probs=58.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..    .+|||++++.........++..|+++||.||++.++|..+++.+++++
T Consensus        52 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~  124 (138)
T 3c3m_A           52 LLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR  124 (138)
T ss_dssp             EEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred             EEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence            579999999999999999863    689999998876665556666778999999999999999999887543

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=98.81  E-value=6.7e-09  Score=81.38  Aligned_cols=70  Identities=16%  Similarity=0.325  Sum_probs=62.1

Q ss_pred             CccccCC-----CCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDIS-----NIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mp-----dmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||     +++|+++++.++..  .+|||+++...+......++..|+++||.||++.++|..+++.++++..
T Consensus        52 i~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~  128 (140)
T 2qr3_A           52 LLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK  128 (140)
T ss_dssp             EEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred             EEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence            5788998     99999999999865  8999999999888889999999999999999999999999998886543

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=98.80  E-value=2.3e-09  Score=84.41  Aligned_cols=72  Identities=15%  Similarity=0.242  Sum_probs=64.8

Q ss_pred             CccccCCCCCHHHHHHHHHH--c--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919            1 MANVDISNIDSLSFVRVLVK--E--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS   72 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire--~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~   72 (277)
                      |+|+.||+++|+++++.++.  .  .+|||+++...+......++..||++||.||++.++|..+|+.++++.+..
T Consensus        56 i~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~  131 (142)
T 3cg4_A           56 LLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQ  131 (142)
T ss_dssp             EEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence            57899999999999999987  3  799999999888777788899999999999999999999999999877643

>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*

Probab=98.79  E-value=1.5e-08  Score=92.70  Aligned_cols=67  Identities=19%  Similarity=0.263  Sum_probs=61.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr   67 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+......++..||++||.||++.++|..++..+++
T Consensus        68 l~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~  138 (358)
T 3bre_A           68 LQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR  138 (358)
T ss_dssp             EEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence            589999999999999999853    6999999999999999999999999999999999999999987753

>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3

Probab=98.78  E-value=9.2e-09  Score=86.32  Aligned_cols=69  Identities=4%  Similarity=0.007  Sum_probs=62.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+ +++.++..  .+|||++|+..+......++..||++||.||+++.+|...+..+++...
T Consensus        57 l~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~  127 (196)
T 1qo0_D           57 FTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE  127 (196)
T ss_dssp             EEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred             EEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence            579999999998 88888764  8999999999999999999999999999999999999999998887654

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=98.78  E-value=1.1e-08  Score=96.93  Aligned_cols=70  Identities=14%  Similarity=0.320  Sum_probs=64.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++..||++||.||++.++|..++.++++.+.
T Consensus        49 llD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~  120 (387)
T 1ny5_A           49 LLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK  120 (387)
T ss_dssp             EEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999865  8999999999999999999999999999999999999999999887543

>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}

Probab=98.78  E-value=1.5e-08  Score=80.02  Aligned_cols=70  Identities=11%  Similarity=0.166  Sum_probs=60.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRS   72 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~~   72 (277)
                      |+|+.||+++|+++++.++..  .+|||+++...+  ....++..||++||.||++.++|..+|+.+++.++..
T Consensus        60 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~  131 (143)
T 2qv0_A           60 FLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ  131 (143)
T ss_dssp             EECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence            579999999999999999875  567888887643  5678899999999999999999999999998877643

>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0

Probab=98.78  E-value=7.7e-09  Score=80.33  Aligned_cols=70  Identities=14%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNE-----IFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~-----~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.+++.  .+|||++++..+.     .....++..||++||.||++.++|..+|++++....
T Consensus        51 i~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~  127 (135)
T 3eqz_A           51 ILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA  127 (135)
T ss_dssp             EEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred             EEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence            579999999999999999876  8999999998774     666778899999999999999999999988765543

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=98.77  E-value=5.2e-09  Score=89.67  Aligned_cols=70  Identities=20%  Similarity=0.271  Sum_probs=64.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++++..+......++..||++||.||+++++|..+++.++++..
T Consensus        56 llD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~  127 (233)
T 1ys7_A           56 VLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG  127 (233)
T ss_dssp             EEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence            579999999999999999875  8999999999888888889999999999999999999999999987754

>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}

Probab=98.76  E-value=2.3e-08  Score=78.70  Aligned_cols=67  Identities=10%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr   67 (277)
                      |+|+.||+++|+++++.++..    .+|||+++...+......++..|+++||.||++.++|..++.....
T Consensus        64 i~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~  134 (143)
T 2qvg_A           64 LLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS  134 (143)
T ss_dssp             EEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence            578999999999999999864    7899999999999999999999999999999999999998776443

>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A

Probab=98.75  E-value=7.8e-09  Score=96.77  Aligned_cols=69  Identities=25%  Similarity=0.333  Sum_probs=59.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+.....+++..||++||.||+ ..+.|..++..++++.
T Consensus        54 llD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~  125 (394)
T 3eq2_A           54 ICDLRMPQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA  125 (394)
T ss_dssp             EECCCSSSSCTHHHHHHHHHTTCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence            589999999999999999876  89999999999999999999999999999999 6888988888877653

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=98.74  E-value=5.1e-09  Score=79.61  Aligned_cols=64  Identities=19%  Similarity=0.242  Sum_probs=55.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY   66 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl   66 (277)
                      |+|+.||+++|+++++.+++.  .+|||++++.....  ..++..|+++||.||++.++|..+++.++
T Consensus        50 l~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~  115 (116)
T 3a10_A           50 ILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL  115 (116)
T ss_dssp             EECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred             EEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence            578999999999999999864  78999999876554  67788999999999999999999888764

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=98.73  E-value=2.3e-08  Score=77.66  Aligned_cols=69  Identities=23%  Similarity=0.271  Sum_probs=54.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..    .++||+++... ......++..||++||.||++.++|..+|+.+.....
T Consensus        55 i~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~  127 (132)
T 3lte_A           55 TLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLD-KAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH  127 (132)
T ss_dssp             EEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSC-SHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred             EEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCC-hHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence            579999999999999999864    34455555544 4478899999999999999999999999998876544

>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}

Probab=98.73  E-value=8.4e-09  Score=88.36  Aligned_cols=69  Identities=19%  Similarity=0.251  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+++.++++.
T Consensus        53 llD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~  122 (230)
T 2oqr_A           53 LLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG  122 (230)
T ss_dssp             EEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred             EEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence            579999999999999999865 899999999988888899999999999999999999999999988764

>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A

Probab=98.72  E-value=8.7e-09  Score=89.34  Aligned_cols=69  Identities=16%  Similarity=0.309  Sum_probs=63.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|||++++..+......++..||++||.||+++++|..+|+.++++.
T Consensus        54 ilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~  123 (238)
T 2gwr_A           54 LLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN  123 (238)
T ss_dssp             EEESSCSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred             EEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence            579999999999999999876 899999999988888899999999999999999999999999887654

>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}

Probab=98.72  E-value=5.7e-09  Score=83.61  Aligned_cols=70  Identities=16%  Similarity=0.096  Sum_probs=53.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||+++...+......++..|+++||.||++.++|..+|+.++++..
T Consensus        55 i~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~  126 (154)
T 2qsj_A           55 LLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI  126 (154)
T ss_dssp             EECC------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence            578999999999999999875  7999999998888889999999999999999999999999999887654

>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}

Probab=98.68  E-value=3.1e-09  Score=91.77  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=65.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+......++..||++||.||+++++|..+++.++++..
T Consensus        52 llD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~  123 (225)
T 3c3w_A           52 VLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS  123 (225)
T ss_dssp             EECSEETTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             EEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence            579999999999999999865  8999999999999999999999999999999999999999999988754

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=98.68  E-value=2.9e-08  Score=81.22  Aligned_cols=68  Identities=21%  Similarity=0.348  Sum_probs=55.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHH--HHHHHHHcCCcEEEeCCCC---------HHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEI--FSWRALVEGACFFLEKPIS---------FDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~--~v~~al~~GA~dyL~KPis---------~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++.. .+|||+++...+..  .+..++..||++||.||++         .++|..+++.++..
T Consensus        76 ilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~  155 (164)
T 3t8y_A           76 TMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV  155 (164)
T ss_dssp             EECSSCSSSCHHHHHHHHHHHSCCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence            589999999999999999865 78999999876643  6778999999999999999         56666666655543

>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*

Probab=98.67  E-value=4.6e-08  Score=86.98  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=50.6

Q ss_pred             CccccCCCCCHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCH
Q 045919            1 MANVDISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISF   55 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~   55 (277)
                      |+|+.||+++|+++++.++...+|||++|+..+......++.+||++||.||+..
T Consensus        53 llD~~mP~~~G~~~~~~lr~~~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~  107 (259)
T 3luf_A           53 LVDLTLPDAPSGEAVKVLLERGLPVVILTADISEDKREAWLEAGVLDYVMKDSRH  107 (259)
T ss_dssp             EEESCBTTBTTSHHHHHHHHTTCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence            5799999999999999999889999999999999999999999999999999744

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=98.65  E-value=3.3e-08  Score=75.52  Aligned_cols=66  Identities=21%  Similarity=0.264  Sum_probs=59.4

Q ss_pred             CccccCC-CCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 045919            1 MANVDIS-NIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mp-dmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr   67 (277)
                      |+|+.|| +++|+++++.++..    .+|||++ +.........++..|+++||.||++.++|...++.+++
T Consensus        54 i~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~  124 (127)
T 2gkg_A           54 VLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG  124 (127)
T ss_dssp             EEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence            5789999 99999999999864    7999999 87778888899999999999999999999999988764

>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*

Probab=98.64  E-value=8e-10  Score=84.57  Aligned_cols=69  Identities=17%  Similarity=0.370  Sum_probs=61.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|+|++++..+......++..||++||.||++.++|..+++.+++++
T Consensus        52 i~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~  122 (124)
T 1dc7_A           52 LSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY  122 (124)
T ss_dssp             EECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred             EEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence            478899999999999998864  799999999888877888899999999999999999999999988654

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=98.62  E-value=8.9e-08  Score=75.05  Aligned_cols=64  Identities=22%  Similarity=0.277  Sum_probs=57.8

Q ss_pred             CCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHH
Q 045919            6 ISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYK   69 (277)
Q Consensus         6 mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~   69 (277)
                      ||+++|+++++.++..  .+|||++++..+......++..||++||.||+ +.++|..+++.++++.
T Consensus        68 ~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~  134 (137)
T 2pln_A           68 VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW  134 (137)
T ss_dssp             ECSTTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred             EcCccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence            7899999999999875  79999999999999999999999999999999 9999999999887654

>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*

Probab=98.59  E-value=2.3e-08  Score=79.42  Aligned_cols=63  Identities=19%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEec--CCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSS--RRNEIFSWRALVEGACFFLEKPISFDDLKYVWQ   63 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs--~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq   63 (277)
                      |+|+.||+++|+++++.++.. .+|+|+++.  .........++..||++||.||+++++|...++
T Consensus        65 ilD~~l~~~~g~~~~~~lr~~~~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~  130 (145)
T 3kyj_B           65 LLDIEMPVMDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEK  130 (145)
T ss_dssp             EECTTSCCCTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence            589999999999999999865 789999887  555667789999999999999999766655543

>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}

Probab=98.55  E-value=1.2e-07  Score=73.42  Aligned_cols=69  Identities=16%  Similarity=0.252  Sum_probs=59.0

Q ss_pred             CccccCCC-CCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISN-IDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpd-mdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+ ++|+++++.++..  .+|||+++...+......++..|  +||.||++.++|..+++++++....
T Consensus        55 i~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~  126 (132)
T 2rdm_A           55 VTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG  126 (132)
T ss_dssp             EEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred             EEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence            57899997 9999999999865  79999999988887777776665  7999999999999999998876543

>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}

Probab=98.53  E-value=3.6e-08  Score=92.97  Aligned_cols=70  Identities=20%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNE-----IFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~-----~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+|+|+++++.++..  .+|||++|+....     ....+++..||.+||.||+++++|..++..+++...
T Consensus        54 llDi~mP~~dG~ell~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~  130 (400)
T 3sy8_A           54 ICDLQMSGMDGLAFLRHASLSGKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ  130 (400)
T ss_dssp             EECSSCSSSCHHHHHHHHHHHTCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence            589999999999999999865  4566666666555     556788899999999999999999999999987654

>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}

Probab=98.50  E-value=7.5e-08  Score=75.95  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=53.7

Q ss_pred             CccccCCCCCHHHHHHHHHH-------cCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVK-------EEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire-------~~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.+++       ..+|||+++.........   ..|+++||.||++.++|..++..++.+..
T Consensus        59 llD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~  132 (140)
T 3c97_A           59 IMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGA  132 (140)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred             EEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence            57999999999999999975       268899998865543322   68999999999999999999998875543

>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}

Probab=98.48  E-value=2e-07  Score=79.46  Aligned_cols=64  Identities=22%  Similarity=0.277  Sum_probs=59.5

Q ss_pred             CCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHH
Q 045919            6 ISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPI-SFDDLKYVWQHSYIYK   69 (277)
Q Consensus         6 mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPi-s~eeL~~~Lq~vlr~~   69 (277)
                      ||+++|+++++.++..  .+|||++|+..+......++..||++||.||+ ++++|..+++.++++.
T Consensus        50 lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~  116 (223)
T 2hqr_A           50 VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW  116 (223)
T ss_dssp             ECCTTHHHHHHHHHHHCTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred             eCCCCHHHHHHHHHhCCCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence            7999999999999864  79999999999999999999999999999999 9999999999988764

>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}

Probab=98.45  E-value=5.1e-08  Score=73.07  Aligned_cols=63  Identities=17%  Similarity=0.138  Sum_probs=55.3

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY   66 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl   66 (277)
                      |+|+.+|+++|+++++.++..    .+|||+++......   .++..|+++||.||++..+|...++.++
T Consensus        50 i~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~  116 (119)
T 2j48_A           50 LMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC  116 (119)
T ss_dssp             EEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred             EEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence            578899999999999999864    78999999887765   8889999999999999999998887654

>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1

Probab=98.35  E-value=7.4e-07  Score=83.43  Aligned_cols=69  Identities=23%  Similarity=0.340  Sum_probs=58.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCH--HHHHHHHHcCCcEEEeCCCCH---------HHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNE--IFSWRALVEGACFFLEKPISF---------DDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~--~~v~~al~~GA~dyL~KPis~---------eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++.. .+|||++|+....  ....+++..||++||.||++.         ++|...++.+.+.
T Consensus        54 llDi~mp~~dGlell~~l~~~~p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~  133 (349)
T 1a2o_A           54 TLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA  133 (349)
T ss_dssp             EEECCCSSSCHHHHHHHHHHSSCCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCCHHHHHHHHHhcCCCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence            579999999999999999876 7999999987765  347889999999999999983         7777777777654


Q ss_pred             H
Q 045919           69 K   69 (277)
Q Consensus        69 ~   69 (277)
                      +
T Consensus       134 ~  134 (349)
T 1a2o_A          134 R  134 (349)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1

Probab=98.30  E-value=1.2e-07  Score=74.48  Aligned_cols=65  Identities=11%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEe-cCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMS-SRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllS-s~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++..  .+|||+++ +..+... ..++   +++||.||++.++|..+++.+++++
T Consensus        65 ilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~  132 (138)
T 2b4a_A           65 IVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM  132 (138)
T ss_dssp             EEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence            578999999999999999875  89999999 7766554 5554   9999999999999999998776543

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=98.18  E-value=4.3e-07  Score=93.09  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=62.3

Q ss_pred             CccccCCC----CCHHHHHHHHHHc--CCcEEEEecCCC-HHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHHHHh
Q 045919            1 MANVDISN----IDSLSFVRVLVKE--EIPIILMSSRRN-EIFSWRALVEGACFFLEKPISFDD-LKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpd----mdG~eLL~~Ire~--~iPVIllSs~~~-~~~v~~al~~GA~dyL~KPis~ee-L~~~Lq~vlr~~~   70 (277)
                      |+|+.||+    ++|+++++.|++.  .+||||+|+... ......++..||++||.||++..+ |...|++++++..
T Consensus        58 ilDi~lp~~~~~~~G~~ll~~iR~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~  135 (755)
T 2vyc_A           58 MFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR  135 (755)
T ss_dssp             EEECCCCSHHHHHHHHHHHHHHHHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcccccccHHHHHHHHHHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence            58999999    9999999999876  799999999766 566677889999999999999999 8899999998754

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=98.12  E-value=2.6e-06  Score=72.57  Aligned_cols=67  Identities=13%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKP--ISFDDLKYVWQHSYI   67 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KP--is~eeL~~~Lq~vlr   67 (277)
                      |+|+.||+++|+++++.++..  ..++++++..........++..||++|+.||  +...+|...+...+.
T Consensus        30 l~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~  100 (237)
T 3cwo_X           30 TMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG  100 (237)
T ss_dssp             EEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred             EEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence            579999999999999999864  5567677666668888999999999999999  677778777766554

>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*

Probab=97.94  E-value=3.2e-05  Score=73.24  Aligned_cols=70  Identities=26%  Similarity=0.328  Sum_probs=62.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      ++|+.||.|+|+++++.++..    .+|+|+++..........++..|+.+|+.||+...++...+..+++.+.
T Consensus       199 l~D~~mp~~dG~~~~~~ir~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~  272 (459)
T 1w25_A          199 IVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR  272 (459)
T ss_dssp             EEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCcHHHHHHHHHhCccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            468899999999999998854    7999999999999888999999999999999999999988887776554

>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A

Probab=92.40  E-value=0.37  Score=37.78  Aligned_cols=47  Identities=19%  Similarity=0.076  Sum_probs=40.3

Q ss_pred             CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919           22 EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus        22 ~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      ..-+|++-..-+.+.+.+.+..||. ||.+|+.+..|..+|++.++..
T Consensus        73 ~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh  119 (121)
T 3q7r_A           73 GSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH  119 (121)
T ss_dssp             SCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred             cccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence            3456777777788899999999999 9999999999999999888753

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=91.65  E-value=0.13  Score=38.62  Aligned_cols=47  Identities=36%  Similarity=0.513  Sum_probs=31.5

Q ss_pred             ccccChHHHHHHHHHHHhcCCCCCCcHHHHhh---c-C-------------CCCCCHHHHhhccC
Q 045919          230 RIVWTSELHLKFIEAVSSLGDIKARPKLILQK---M-N-------------VPGLTQRQVASHLQ  277 (277)
Q Consensus       230 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~---m-~-------------v~~lt~~~v~shlq  277 (277)
                      .-+|.++|-.-|++|+...-... +-|.+|..   | +             -.-=|+.+|.||||
T Consensus         6 e~vW~~~lE~aF~eaL~~yp~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQ   69 (82)
T 2hzd_A            6 EGVWSPDIEQSFQEALSIYPPCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ   69 (82)
T ss_dssp             SCCSCHHHHHHHHHHHHHSCSSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHcCCCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHH
Confidence            45899999999999999886221 11222311   1 1             14468889999998

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=91.16  E-value=0.67  Score=38.52  Aligned_cols=51  Identities=22%  Similarity=0.211  Sum_probs=42.4

Q ss_pred             HHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEE------eCCCCHHHHHHHH
Q 045919           12 LSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFL------EKPISFDDLKYVW   62 (277)
Q Consensus        12 ~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL------~KPis~eeL~~~L   62 (277)
                      +++++++... .+|||.+.+........+++..||++++      .+|+++.++...+
T Consensus       163 ~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l  220 (237)
T 3cwo_X          163 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYL  220 (237)
T ss_dssp             HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHH
Confidence            5567776655 8999999999999999999999999986      5788888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	4e-18
d1xhfa1	121	c.23.1.1 (A:2-122) Aerobic respiration control pro	0.001
d1ny5a1	137	c.23.1.1 (A:1-137) Transcriptional activator sigm5	0.001
d1dz3a_	123	c.23.1.1 (A:) Sporulation response regulator Spo0A	0.002
d2r25b1	128	c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba	0.004

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.6 bits (183), Expect = 4e-18
 Identities = 30/52 (57%), Positives = 37/52 (71%)

Query: 226 KRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ 277
           ++KPR++WT ELH KF+ AV  LG  +A PK IL  MNV  LT+  VASHLQ
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 22  EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDL 58
            + ++ ++ R NE+     L  GA  ++ KP +  +L
Sbjct: 73  NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPREL 109

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 22  EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRRSKIQLEDARK 81
           E  +I+++       +  A+  GA  FL KP   ++++       I  R+ + + E  R+
Sbjct: 72  ETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINK-AIEHRKLRKENELLRR 130

Query: 82  PEQEI 86
            E+++
Sbjct: 131 -EKDL 134

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Length = 123

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 11/54 (20%), Positives = 28/54 (51%)

Query: 5   DISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDL 58
            +  +  L  +R   + +  +I++++   E  + +A+  GA +F+ KP   ++L
Sbjct: 59  HLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENL 112

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 5   DISNIDSLSFVRVLVKEEIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLK 59
            +  + S   +R  +    PI+ +++  ++      L  G   FL KPI    LK
Sbjct: 63  KVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLK 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.9
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	99.44
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	99.43
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	99.41
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	99.41
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	99.41
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	99.39
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	99.39
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	99.39
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	99.38
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	99.37
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	99.37
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	99.36
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	99.36
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	99.35
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	99.35
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	99.35
d1k68a_	140	Response regulator for cyanobacterial phytochrome	99.35
d1k66a_	149	Response regulator for cyanobacterial phytochrome	99.34
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	99.34
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	99.33
d1s8na_	190	Probable two-component system transcriptional regu	99.33
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	99.32
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	99.32
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	99.32
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	99.31
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	99.31
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	99.31
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	99.3
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	99.29
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	99.25
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	99.21
d1qo0d_	189	Positive regulator of the amidase operon AmiR {Pse	99.01
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	98.88
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	98.75

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=3.3e-25  Score=159.46  Aligned_cols=54  Identities=56%  Similarity=0.824  Sum_probs=52.3

Q ss_pred             CCCCCCccccChHHHHHHHHHHHhcCCCCCCcHHHHhhcCCCCCCHHHHhhccC
Q 045919          224 KKKRKPRIVWTSELHLKFIEAVSSLGDIKARPKLILQKMNVPGLTQRQVASHLQ  277 (277)
Q Consensus       224 ~~~~k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlq  277 (277)
                      +..+|+|++||+|||++||+||++||.+.|+||.||++|+|+|||++||+||||
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQ   54 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ   54 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHH
Confidence            457999999999999999999999999999999999999999999999999998

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2.1e-13  Score=107.33  Aligned_cols=68  Identities=19%  Similarity=0.317  Sum_probs=64.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+.....+++.+||++||.||+++++|..++++++++
T Consensus        49 ilD~~mP~~~G~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~lrR  118 (119)
T d2pl1a1          49 IVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR  118 (119)
T ss_dssp             EECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred             ehhccCCCchhHHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            589999999999999999876  89999999999999999999999999999999999999999999975

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=1.2e-13  Score=108.98  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=65.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+.....++++.||++||.||+++++|..++++++++++
T Consensus        48 llD~~mP~~~G~~~~~~lr~~~~~~~ii~it~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~r  119 (120)
T d1p2fa2          48 VLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK  119 (120)
T ss_dssp             EEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred             EEeCcccccchhHHHHHHhhcCCCCcEEEEecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHcc
Confidence            589999999999999999865  8999999999999999999999999999999999999999999998754

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.41  E-value=3.4e-13  Score=110.74  Aligned_cols=71  Identities=25%  Similarity=0.315  Sum_probs=66.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||++||+++++.|+..    .+|||++|+..+.....+++..||++||.||+++.+|...|+.++++++.
T Consensus        60 llD~~mP~~dG~el~~~ir~~~~~~~iPiI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~~  134 (153)
T d1w25a2          60 IVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRY  134 (153)
T ss_dssp             EEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECccccccchHHHHHHHhccccccceeEEeecCCCHHHHHHHHhcCcceEEECCCCHHHHHHHHHHHHHHHHH
Confidence            589999999999999999854    89999999999999999999999999999999999999999999887653

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2e-13  Score=107.30  Aligned_cols=69  Identities=25%  Similarity=0.384  Sum_probs=65.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.+++. .+|||++|+..+.....+++..||++||.||+++++|..+|+.+++++
T Consensus        49 ilD~~mP~~~G~e~~~~ir~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~  118 (119)
T d1zh2a1          49 ILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH  118 (119)
T ss_dssp             EEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EeccccCCCCCchHHHHHHhccCCcEEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Confidence            589999999999999999876 899999999999999999999999999999999999999999999764

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=99.41  E-value=2.4e-13  Score=109.83  Aligned_cols=70  Identities=21%  Similarity=0.432  Sum_probs=65.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+|+|+++++.+++.  ++|||++|+..+.....+|+..||++||.||++.++|..++++++++++
T Consensus        49 l~D~~mP~~~G~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~  120 (140)
T d1qkka_          49 ISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR  120 (140)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCCEeecCCCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999875  8999999999999999999999999999999999999999999987765

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=4.4e-13  Score=105.49  Aligned_cols=68  Identities=22%  Similarity=0.339  Sum_probs=64.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+.....+++..||++||.||+++++|...|+.++++
T Consensus        49 l~D~~mp~~~G~~l~~~lr~~~~~~~~pvi~lt~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~v~~~lrR  120 (121)
T d1zesa1          49 LLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR  120 (121)
T ss_dssp             EECSSCTTSCHHHHHHHHHHSTTTTTSCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred             EeecCCCCCCHHHHHHHHHhCccCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence            589999999999999999864    79999999999999999999999999999999999999999998875

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.39  E-value=4.3e-13  Score=105.11  Aligned_cols=68  Identities=22%  Similarity=0.324  Sum_probs=64.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.+++. .+|||++|+........+++..||++||.||+++++|..+|++++++
T Consensus        49 llD~~mp~~~G~~~~~~i~~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lrR  117 (117)
T d2a9pa1          49 ILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR  117 (117)
T ss_dssp             EECSSCSSSCHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred             EeccccCCCCccHHHHHHHhCCCCCEEEEecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhCC
Confidence            589999999999999999876 89999999999999999999999999999999999999999998864

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=99.39  E-value=5.2e-13  Score=105.59  Aligned_cols=68  Identities=18%  Similarity=0.289  Sum_probs=63.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.+++.  .+|||++|+..+.....++++.||++||.||+++++|..++++++++
T Consensus        52 i~D~~mp~~~G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~a~e~  121 (123)
T d1dbwa_          52 VTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH  121 (123)
T ss_dssp             EEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred             EEeccCccccchHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            579999999999999999876  89999999999999999999999999999999999999999987653

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=1.2e-13  Score=109.07  Aligned_cols=69  Identities=20%  Similarity=0.279  Sum_probs=65.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.+++.  .+|||++|+..+.....+++.+||++||.||+++++|..+++.+++++
T Consensus        50 l~D~~mP~~~G~el~~~ir~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~rr  120 (121)
T d1ys7a2          50 VLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR  120 (121)
T ss_dssp             EEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEEeeccCcccHHHHHHHHhcCCCCEEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence            589999999999999999876  899999999999998999999999999999999999999999999865

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=3.7e-13  Score=106.07  Aligned_cols=70  Identities=14%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+.....+++..||++||.||+++++|..+|+++++++.
T Consensus        50 llD~~mp~~~g~~~~~~lr~~~~~~piI~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~r~~  121 (122)
T d1kgsa2          50 ILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS  121 (122)
T ss_dssp             EEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             ccccccccchhHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHcCCceeecCCCCHHHHHHHHHHHHHHhc
Confidence            589999999999999999876  8999999999999999999999999999999999999999999998763

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=99.36  E-value=7.4e-13  Score=104.12  Aligned_cols=66  Identities=15%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSY   66 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vl   66 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+.....+++.+||++||.||+++++|..++++++
T Consensus        50 llD~~mP~~~G~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~L  117 (119)
T d1peya_          50 LLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL  117 (119)
T ss_dssp             EEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHS
T ss_pred             EEeccCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
Confidence            589999999999999999865  899999999999999999999999999999999999999998764

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=9.8e-13  Score=103.68  Aligned_cols=68  Identities=18%  Similarity=0.310  Sum_probs=64.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.+++. .+|||++|+..+.....+++.+||++||.||+++++|..+++.++++
T Consensus        51 i~D~~mp~~~G~~~~~~~r~~~~~pii~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~v~~~l~R  119 (121)
T d1xhfa1          51 IMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR  119 (121)
T ss_dssp             EECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred             EeecccCCccCcHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence            589999999999999999876 99999999999999999999999999999999999999999999875

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.35  E-value=2.6e-13  Score=107.22  Aligned_cols=69  Identities=17%  Similarity=0.370  Sum_probs=65.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++++++.  .+|||++|+..+.....+++..||++||.||++.++|..+++++++++
T Consensus        52 i~D~~mp~~~G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l~~~  122 (123)
T d1krwa_          52 LSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY  122 (123)
T ss_dssp             EECCSSSSSTTHHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             EehhhcCCchHHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCeEEeCcCCHHHHHHHHHHHHHcc
Confidence            589999999999999999865  899999999999999999999999999999999999999999999875

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=99.35  E-value=1.4e-12  Score=105.70  Aligned_cols=70  Identities=14%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|++++++|+..    .+||||+|+..+.....+++.+||++||.||++.++|..+++.+.+...
T Consensus        61 llD~~mP~~~G~el~~~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~l~~~~~  134 (144)
T d1i3ca_          61 LLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL  134 (144)
T ss_dssp             EECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             EEECccccccchHHHHHHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            579999999999999999864    7999999999999999999999999999999999999999988777543

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.35  E-value=9.2e-13  Score=105.89  Aligned_cols=70  Identities=14%  Similarity=0.320  Sum_probs=65.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+.....+++.+||++||.||+.+++|..++.++++++.
T Consensus        49 ilD~~mp~~~G~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~  120 (137)
T d1ny5a1          49 LLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK  120 (137)
T ss_dssp             EEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHhhhhhhHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999865  8999999999999999999999999999999999999999999887654

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=99.35  E-value=1.4e-12  Score=105.26  Aligned_cols=70  Identities=11%  Similarity=0.191  Sum_probs=64.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|++||+|+|+++++.++..    .+|||++|+..+.....+++.+||++||.||++.++|..+|+.+++...
T Consensus        60 llD~~mP~~dG~el~~~ir~~~~~~~iPvI~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~~~~  133 (140)
T d1k68a_          60 LLDLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL  133 (140)
T ss_dssp             EECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred             EEeeccccccChHHHHHHHhCcccCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            589999999999999999864    7999999999999999999999999999999999999999998876543

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=99.34  E-value=1.2e-12  Score=106.68  Aligned_cols=70  Identities=16%  Similarity=0.260  Sum_probs=65.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+|+|+++++.|++.    .+|||++|+..+.....+++.+||++||.||++..+|...++.+++...
T Consensus        67 llD~~mP~~~G~el~~~ir~~~~~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~  140 (149)
T d1k66a_          67 LLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL  140 (149)
T ss_dssp             EECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred             EccccccCCCcHHHHHHHHhccccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            589999999999999999864    8999999999999999999999999999999999999999999998653

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.7e-12  Score=101.72  Aligned_cols=69  Identities=20%  Similarity=0.317  Sum_probs=64.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++.++.. .+|||++|+..+.....+++.+||++||.||+++++|..+|++++++.
T Consensus        50 ilD~~mp~~~g~~~~~~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~  119 (120)
T d1zgza1          50 LLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI  119 (120)
T ss_dssp             EEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             eeehhhccchhHHHHHHHhccCCCeEEEEEccCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHccc
Confidence            589999999999999998866 899999999999999999999999999999999999999999999764

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.5e-12  Score=104.25  Aligned_cols=71  Identities=20%  Similarity=0.285  Sum_probs=66.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+++++.+++.  .+|||++|+........+++..||++||.||++.++|..++..++++.+.
T Consensus        57 llD~~mP~~dG~el~~~ir~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~r~r~  129 (133)
T d2ayxa1          57 LSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRK  129 (133)
T ss_dssp             EEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCCCCHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            589999999999999999876  89999999999999999999999999999999999999999998876653

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=6.7e-13  Score=111.66  Aligned_cols=71  Identities=21%  Similarity=0.266  Sum_probs=66.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|++||+|||+++++.++.. .+|||++|+..+...+.+|+.+||++||.||+++++|..+|..++.+.+.
T Consensus        53 llDi~mP~~dG~e~~~~ir~~~~~pIi~lTa~~~~~~~~~al~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~  124 (190)
T d1s8na_          53 IMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFRE  124 (190)
T ss_dssp             EEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCcchHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEeccCCCCHHHHHHHHHHHHHhhHh
Confidence            589999999999999999876 89999999999999999999999999999999999999999998877553

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.32  E-value=1.4e-12  Score=102.43  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=63.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|++++..++..  .+|||++|+........+++.+||++||.||+++++|...|++++++
T Consensus        51 llD~~mp~~~G~~~~~~~r~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~lrR  120 (121)
T d1mvoa_          51 VLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR  120 (121)
T ss_dssp             EEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred             EecccccCCCCchhhhhhhccCCCCEEEEEEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            589999999999999999876  79999999998888889999999999999999999999999999875

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=1.3e-12  Score=104.22  Aligned_cols=68  Identities=21%  Similarity=0.312  Sum_probs=62.6

Q ss_pred             CccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.+++.   .+|||++|+..+.....+++.+||++||.||++.++|..++++++..
T Consensus        56 llD~~mP~~dG~el~~~ir~~~~~~~piI~lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  126 (128)
T d2r25b1          56 FMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA  126 (128)
T ss_dssp             EECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHccCCCCeEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            589999999999999999853   78999999999999999999999999999999999999999877543

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.32  E-value=9.3e-13  Score=103.99  Aligned_cols=68  Identities=18%  Similarity=0.348  Sum_probs=62.4

Q ss_pred             CccccCCCCCHHHHHHHHHHc---CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE---EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~---~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+|||+++++.+++.   .+|||++|+........+++..||++||.||+++++|..+|++++++
T Consensus        52 llD~~mP~~dG~e~~~~ir~~~~~~~~ii~~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~v~~k  122 (123)
T d1dz3a_          52 LLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK  122 (123)
T ss_dssp             EEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred             EEcCCCCCCCHHHHHHHHHhcCCCCCeEEEEECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            589999999999999999863   45799999999999999999999999999999999999999988764

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.31  E-value=7.9e-13  Score=104.05  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+........+++.+||++||.||+++.+|...++.++++
T Consensus        50 l~D~~mp~~dG~el~~~ir~~~~~~~iPii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~r  121 (123)
T d1mb3a_          50 LMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER  121 (123)
T ss_dssp             EEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred             EEEeccCCCcHHHHHHHHHhCCCcCCCCeEEEEEecCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhC
Confidence            589999999999999999864    78999999998888889999999999999999999999999998864

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=2e-12  Score=101.44  Aligned_cols=65  Identities=15%  Similarity=0.264  Sum_probs=61.1

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHS   65 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~v   65 (277)
                      |+|+.||+++|+++++++++.  .+|||++|+..+.....+++..||++||.||+++++|..+++++
T Consensus        51 ilD~~mp~~~G~e~~~~ir~~~~~~pvi~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v  117 (118)
T d1u0sy_          51 TMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV  117 (118)
T ss_dssp             EEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHhCCCCcEEEEEccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence            589999999999999999865  89999999999999999999999999999999999999998765

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.6e-12  Score=103.04  Aligned_cols=69  Identities=19%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||+++|+++++++++.  .+|||++|+..+...+.+++++||++||.||+++++|..+|++++++.
T Consensus        53 llD~~mP~~~G~el~~~ir~~~~~~~vivlt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~v~~g~  123 (138)
T d1a04a2          53 LLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE  123 (138)
T ss_dssp             EEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred             EEecCCCCCCHHHHHHHHHhhCCCCCEEEEEEECCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHCCC
Confidence            589999999999999999876  899999999999999999999999999999999999999999988654

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=99.30  E-value=1.4e-12  Score=103.76  Aligned_cols=68  Identities=15%  Similarity=0.351  Sum_probs=63.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIY   68 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~   68 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+.....+++..|+++||.||++.++|..++++++.+
T Consensus        56 i~D~~mP~~~G~el~~~lr~~~~~~~~pii~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~vl~~  127 (129)
T d1p6qa_          56 ISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA  127 (129)
T ss_dssp             EECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred             EeeeecCCCChHHHHHHHHhCcccCCCeEEEEEecCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            589999999999999999863    79999999999999999999999999999999999999999999865

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.29  E-value=4.4e-12  Score=102.02  Aligned_cols=70  Identities=24%  Similarity=0.294  Sum_probs=65.2

Q ss_pred             CccccCCCCCHHHHHHHHHHc----CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE----EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~----~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..    .+|||++|+..+.....+++.+||++||.||+++.+|...|+++++.+.
T Consensus        50 l~D~~~p~~~G~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lr~~~  123 (139)
T d1w25a1          50 LLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL  123 (139)
T ss_dssp             EEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             eeeccccCCCchHHHHHhhhcccccCCCEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            579999999999999999864    7999999999999999999999999999999999999999999887654

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.25  E-value=4.1e-12  Score=100.63  Aligned_cols=70  Identities=19%  Similarity=0.317  Sum_probs=64.9

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHh
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKR   70 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~   70 (277)
                      |+|+.||+++|+++++.++..  .+|||++|+..+.....+++..||++||.||++.++|..+|+++++...
T Consensus        51 ilD~~mp~~~G~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~  122 (128)
T d1yioa2          51 VLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA  122 (128)
T ss_dssp             EEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             ehhhhcccchhHHHHHHHHhhCCCCeEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999876  8999999999988888999999999999999999999999999987654

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.21  E-value=8.5e-12  Score=99.84  Aligned_cols=69  Identities=13%  Similarity=0.194  Sum_probs=62.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc-------CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE-------EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYK   69 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-------~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~   69 (277)
                      |+|+.||++||+++++.+++.       .+|||++|+........+++.+|+++||.||++.++|..+++.+++.+
T Consensus        55 llD~~mP~~dG~el~~~ir~~~~~~~~~~~~ii~lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~r  130 (134)
T d1dcfa_          55 FMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR  130 (134)
T ss_dssp             EEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred             EEEeccCCCchHHHHHHHHHhcccccCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhhh
Confidence            589999999999999999742       578999999999999999999999999999999999999999887643

>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Positive regulator of the amidase operon AmiR
domain: Positive regulator of the amidase operon AmiR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=2.2e-10  Score=95.05  Aligned_cols=71  Identities=3%  Similarity=-0.047  Sum_probs=62.0

Q ss_pred             CccccCCCCCHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHhh
Q 045919            1 MANVDISNIDSLSFVRVLVKE-EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQHSYIYKRR   71 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~-~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~vlr~~~~   71 (277)
                      |+|+.||+++|+.+....... .+|||++|+..+...+.+|+..||++||.||+++++|..+|..++.....
T Consensus        56 l~D~~mp~~~~~~~~~~~~~~p~~pvI~lta~~~~~~~~~al~~Ga~~yL~KP~~~~~L~~~i~~~~~~~~~  127 (189)
T d1qo0d_          56 FTSIFQNRHHDEIAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISEE  127 (189)
T ss_dssp             EEECCSSTHHHHHHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCcHHHHHHHHHHcCCCCCEEEEeccchHHHHHHHHHcCCcEEEEecchhhHHHHHHhhccccccc
Confidence            579999998887766555444 89999999999999999999999999999999999999999988766554

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=98.88  E-value=3.3e-10  Score=88.68  Aligned_cols=61  Identities=11%  Similarity=0.346  Sum_probs=50.7

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRRNEIFSWRALVEGACFFLEKPISFDDLKYVWQH   64 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~~~~~v~~al~~GA~dyL~KPis~eeL~~~Lq~   64 (277)
                      |+|+.||+++|+++++.+++.  .+|||++|+..+.  ...+...|+ +||.||+++++|..+|++
T Consensus        52 ilD~~lp~~~G~el~~~ir~~~~~~pii~lt~~~~~--~~~~~~~~~-dyl~KP~~~~eL~~~i~~  114 (118)
T d2b4aa1          52 IVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHE--LIESSEHNL-SYLQKPFAISELRAAIDY  114 (118)
T ss_dssp             EEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC----CCCCSSSCE-EEEESSCCHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCccH--HHHHhhcCC-CEEECCCCHHHHHHHHHH
Confidence            589999999999999999876  8999999986543  234556676 899999999999988875

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.75  E-value=3.4e-09  Score=84.73  Aligned_cols=54  Identities=26%  Similarity=0.356  Sum_probs=42.5

Q ss_pred             CccccCCCCCHHHHHHHHHHc--CCcEEEEecCC-CHHHHHHHHHcCCcEEEeCCCC
Q 045919            1 MANVDISNIDSLSFVRVLVKE--EIPIILMSSRR-NEIFSWRALVEGACFFLEKPIS   54 (277)
Q Consensus         1 IlDl~mpdmdG~eLL~~Ire~--~iPVIllSs~~-~~~~v~~al~~GA~dyL~KPis   54 (277)
                      |+|+.||+|||+++++.+++.  ..+|++++... ......++++.||.+||.||+.
T Consensus        54 llDi~MP~~dG~e~~~~ir~~~~~~~i~i~~~~~~~~~~~~~al~~Ga~~yl~KP~~  110 (140)
T d1a2oa1          54 TLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQL  110 (140)
T ss_dssp             EEECCCSSSCHHHHHHHHHHSSCCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             EEcCCCCCCCHHHHHHHHHHhCCCCcEEEEEecCCChHHHHHHHHcCCCEEEECCCC
Confidence            589999999999999999876  34455555433 2346678999999999999964